Citrus Sinensis ID: 044737

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVEESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHcccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHEEEEcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHccHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MDAEKVKELKQFIDQcksnpsiladpslSFFRDYLESLHakvptdaykegkseprasvveeseeeEQRVEVEEKEEEEDEIVesdielegdiveadndppqkmgdssaeVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAAleinpdsakgyktRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKeeqsssserpggmpggaggmpggfpggmpggfpggmpggfpggmpggfpggmpggfpggmpgggpgnvdfskilndpelmaafsdPEVMAALQDVMKnpanlaqhqanpkVAPIIAKMMAKFGGPK
Flexible Loop (DISEMBL)
MDAEKVKELKQFIDqcksnpsiladPSLSFFRDYLESLHAkvptdaykegkseprasvveeseeeeqrveveekeeeedeivesdielegdiveadndppqkmgdssaevTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLkkvepnalrieehrrkydrlrrereerkvererlrRRAEAQAAyekakkeeqsssserpggMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK
Low Complexity Region (SEG)
MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASvveeseeeeqrveveekeeeedeivesdieleGDIVEADNDPPQKMGDSSAEVTDekreaaaeakakameaISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIeehrrkydrlrrereerkvererlrrraeaqaayekakkeeqsssserpggmpggaggmpggfpggmpggfpggmpggfpggmpggfpggmpggfpggmpgggpgNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK
Disordered region (IsUnstruct)
*********************ILADPSLSFFRDYLESLH**************************************************************************************************IELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNA************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***EKVKELKQFIDQCKSNPSILADPSLSFFRDYLES********************************************************************************AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV************************************************************************************************************************************************************VAPIIAKMMAKF****
Disordered Region (DISEMBL)
MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPT***************************************SDIELEGDIVEADNDP****************************AISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRR***************************************MPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK
Disordered Region (DISPRO)
MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKV***********************************************G*I*E*DNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAE********************************GFPGGMPGGFPGGMPGGFPGG*P**************MPGGGPGNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPxxxxxxxxxxxxxxxxxxxxxxxxxxIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
Q93YR3	441	FAM10 family protein At4g	yes	no	0.691	0.625	0.744	1e-105
Q5ZLF0	361	Hsc70-interacting protein	yes	no	0.877	0.969	0.450	1e-81
Q8VWG7	380	TPR repeat-containing thi	no	no	0.631	0.663	0.594	2e-79
Q6ES52	317	TPR repeat-containing thi	no	no	0.458	0.577	0.706	3e-67
Q8IZP2	240	Putative protein FAM10A4	yes	no	0.593	0.987	0.476	2e-56
Q8NFI4	369	Putative protein FAM10A5	yes	no	0.596	0.644	0.473	3e-56
Q99L47	371	Hsc70-interacting protein	yes	no	0.578	0.622	0.472	6e-56
Q5RF31	369	Hsc70-interacting protein	yes	no	0.581	0.628	0.481	6e-55
P50502	369	Hsc70-interacting protein	yes	no	0.581	0.628	0.481	6e-55
P50503	368	Hsc70-interacting protein	yes	no	0.578	0.627	0.464	2e-54

>sp|Q93YR3|F10AL_ARATH FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/282 (74%), Positives = 237/282 (84%), Gaps = 6/282 (2%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGK-SEPRASVV 59
           MD+ K+ ELK FIDQCKS+PS+L  PSLSFFRDYLESL AK+PT  ++E K ++PR+ VV
Sbjct: 1   MDSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPTGVHEEDKDTKPRSFVV 60

Query: 60  EESE----EEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKR 115
           EES+    E E+     E+EEEEDEIVESD+ELEGD VE DNDPPQKMGDSS EVTDE R
Sbjct: 61  EESDDDMDETEEVKPKVEEEEEEDEIVESDVELEGDTVEPDNDPPQKMGDSSVEVTDENR 120

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDA 174
           EAA EAK KAMEA+SEG  DEAIE  T AI LNP SAIMY  RASVYIK+KKPNAAIRDA
Sbjct: 121 EAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNPTSAIMYGNRASVYIKLKKPNAAIRDA 180

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 234
            AALEINPDSAKGYK+RGMA AMLG W EA  DLH+AS ID+DEEI+AVLKKVEPNA ++
Sbjct: 181 NAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKL 240

Query: 235 EEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQ 276
           EEHRRKYDRLR+ERE++K ER+RLRRRAEAQAAY+KAKKEEQ
Sbjct: 241 EEHRRKYDRLRKEREDKKAERDRLRRRAEAQAAYDKAKKEEQ 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZLF0|F10A1_CHICK Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/406 (45%), Positives = 256/406 (63%), Gaps = 56/406 (13%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVP-------TDAYKEGKSE 53
           MD+ K+ EL+ F+  CK NP +L    L F R+++ES+   +P       TD   +GK+E
Sbjct: 1   MDSRKLGELRAFVRLCKQNPGLLHTEELGFLREWVESMGGTIPPAPASTSTDETSKGKAE 60

Query: 54  PRASVVEESEEEEQRVEVEEKEEEEDEIVESDIELEGD-IVEADNDPPQKMGDSSAEVTD 112
                    E+ E+ V+  E E EE     SD+E++ + ++E DND PQ+MGD + EVT+
Sbjct: 61  ---------EQPEEPVKSPEPESEE-----SDLEIDNEGVIEPDNDDPQEMGDENVEVTE 106

Query: 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAI 171
           E  + A E K +A+ A+SEG L +A+ L T+AI LNP  AI+YA RASV++K++KPNAAI
Sbjct: 107 EMMDQANEKKMEAINALSEGDLQKAVNLFTDAIKLNPCLAILYAKRASVFVKLQKPNAAI 166

Query: 172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNA 231
           RD   A++INPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A
Sbjct: 167 RDCDRAIKINPDSAQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRA 226

Query: 232 LRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGGAG 291
            +I EHRRKY+R R E+E     +ER+ R  +A+  +E+A++EE++          G  G
Sbjct: 227 QKIAEHRRKYERKREEKE----IKERMERVKKAREEHERAQREEEARRQAGGAQFGGFPG 282

Query: 292 GMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPE 351
           G PGGFPG MPGG PG        GMPG                        ++IL+DPE
Sbjct: 283 GFPGGFPGAMPGGMPGM------AGMPG-----------------------LNEILSDPE 313

Query: 352 LMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 397
           ++AA  DPEVMAA QDV +NPAN++++Q NPKV  +I K+ AKFG 
Sbjct: 314 VLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKFGS 359

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Gallus gallus (taxid: 9031)

>sp|Q8VWG7|TDX_ARATH TPR repeat-containing thioredoxin TDX OS=Arabidopsis thaliana GN=TDX PE=1 SV=1

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/271 (59%), Positives = 206/271 (76%), Gaps = 19/271 (7%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVP----TDAYKEGKSEPRA 56
           +DA +V EL++F++Q K NPSIL DPSL FF++YL SL A+VP    T+   E K+E + 
Sbjct: 2   VDAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDYEDKAETKP 61

Query: 57  SVVEESEEEEQRVEVEEKEEEEDEIVESDIELEG-DIVEADNDPPQKMGDSSAEVTDEKR 115
           S   + ++++             +I+ESD+EL+  D+VE DN+PPQ MGD +AEVTDE R
Sbjct: 62  SFSPKHDDDDD------------DIMESDVELDNSDVVEPDNEPPQPMGDPTAEVTDENR 109

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDA 174
           + A   K+KAMEAIS+G+ DEAIE  T+A+MLNP SAI+YATRASV++K+KKPNAAIRDA
Sbjct: 110 DDAQSEKSKAMEAISDGRFDEAIEHLTKAVMLNPTSAILYATRASVFLKVKKPNAAIRDA 169

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 234
             AL+ N DSAKGYK+RGMA AMLG WEEA  DLHVASK+D+DEEI  +LKKVEPNA RI
Sbjct: 170 NVALQFNSDSAKGYKSRGMAKAMLGQWEEAAADLHVASKLDYDEEIGTMLKKVEPNAKRI 229

Query: 235 EEHRRKYDRLRREREERKVERERLRRRAEAQ 265
           EEHRRKY RLR+E+E ++ ERER R++ EAQ
Sbjct: 230 EEHRRKYQRLRKEKELQRAERER-RKQQEAQ 259

Thiol-disulfide oxidoreductase that possesses insulin disulfide bonds reducing activity, disulfide reductase, foldase chaperone and holdase chaperone activities. Heat shock causes oligomerization and formation of high molecular weiht (HMW) complexes with concomitant functional switching from a disulfide reductase and foldase chaperone to a holdase chaperone. May interact with HSP70 proteins through the TPR repeats.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ES52|TDX_ORYSJ TPR repeat-containing thioredoxin TDX OS=Oryza sativa subsp. japonica GN=Os09g0401200 PE=2 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 130/184 (70%), Positives = 154/184 (83%), Gaps = 1/184 (0%)

Query: 78  EDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEA 137
           EDEI+ESDIELEG+ VE DNDPPQKMGD S EV+DEKR+ A   K K ++A SEGKLDEA
Sbjct: 10  EDEIMESDIELEGEAVEPDNDPPQKMGDPSVEVSDEKRDQAQLCKNKGVDAFSEGKLDEA 69

Query: 138 IELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA 196
           IE  TEAI+LNP SAI YATRA +++K KKPNAAIRDA AAL+INPDSAKGYK+RGMA A
Sbjct: 70  IEHLTEAIVLNPTSAIAYATRAVIFVKSKKPNAAIRDADAALKINPDSAKGYKSRGMAKA 129

Query: 197 MLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERE 256
           MLG WEEA  DL +A+K+D+DEEI A LKKVEPN L+IEEHR+KY+RLR+ER+ +K E E
Sbjct: 130 MLGKWEEAAQDLRMAAKLDYDEEIGAELKKVEPNVLKIEEHRKKYERLRKERDIKKAEME 189

Query: 257 RLRR 260
           + R+
Sbjct: 190 KQRK 193

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions and act as chaperone under heat shock. May interact with HSP70 proteins through the TPR repeats.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8IZP2|ST134_HUMAN Putative protein FAM10A4 OS=Homo sapiens GN=ST13P4 PE=5 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/250 (47%), Positives = 173/250 (69%), Gaps = 13/250 (5%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD  KV EL+ F+  CK +PSIL    + F R+++ES+           G +  +A   E
Sbjct: 1   MDPRKVNELRAFVKMCKKDPSILHTQEMRFLREWVESMG----------GTATQKAKSEE 50

Query: 61  ESEEEEQRVEVEEK-EEEEDEIVESDIELEGD-IVEADNDPPQKMGDSSAEVTDEKREAA 118
            ++EE+   +VEE  + +E    ESD+E++ + ++E D D PQ+MGD +AE+T+E  + A
Sbjct: 51  NTKEEKPDSKVEEDLKADEPSSEESDLEIDKEGVIEPDTDAPQEMGDENAEITEEVMDQA 110

Query: 119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAA 177
            + K  A+EA+++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A
Sbjct: 111 NDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRA 170

Query: 178 LEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEH 237
           +EINPDSA+ YK RG AH +LGHWEEA HDL +A K D+DE+ +A+LK+V+P A +I EH
Sbjct: 171 IEINPDSAQPYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEVQPRAQKIAEH 230

Query: 238 RRKYDRLRRE 247
           +RKY+R R E
Sbjct: 231 QRKYERKREE 240

Homo sapiens (taxid: 9606)

>sp|Q8NFI4|F10A5_HUMAN Putative protein FAM10A5 OS=Homo sapiens GN=ST13P5 PE=5 SV=1

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/245 (47%), Positives = 173/245 (70%), Gaps = 7/245 (2%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD  KV EL+ F+  CK +PS+L    + F R+++ES+  KVP  A ++ KSE      +
Sbjct: 1   MDPCKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPP-ATQKAKSEEN---TK 56

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGD-IVEADNDPPQKMGDSSAEVTDEKREAAA 119
           E + + ++VE E+ + +E    ESD+E++ + ++E D D PQ+MGD + E+T+E  + A 
Sbjct: 57  EEKPDSKKVE-EDLKADEPSTEESDLEIDKEGVIEPDTDAPQEMGDENVEITEEMMDQAN 115

Query: 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAAL 178
           + K  A+E +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAI+D   A+
Sbjct: 116 DKKVAAIEVLNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIQDCDRAI 175

Query: 179 EINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHR 238
           EINPDSA+ YK RG AH +LGHWEEA HDL  A K+D+DE+ +A+LK+V+P A +I EH 
Sbjct: 176 EINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQPRAQKIAEHW 235

Query: 239 RKYDR 243
           RKY+R
Sbjct: 236 RKYER 240

Homo sapiens (taxid: 9606)

>sp|Q99L47|F10A1_MOUSE Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1

 Score =  218 bits (555), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 166/239 (69%), Gaps = 8/239 (3%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD  KV EL+ F+  C+ +PS+L    + F R+++ES+  KVP   +K  KSE      +
Sbjct: 1   MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHK-AKSEENTKEEK 59

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGD-IVEADNDPPQKMGDSSAEVTDEKREAAA 119
             +  E+ ++ EE   EE     SD+E++ + ++E D D PQ+MGD +AE+T+E  + A 
Sbjct: 60  RDKTTEENIKTEELSSEE-----SDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDEAN 114

Query: 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAAL 178
           E K  A+EA+++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+
Sbjct: 115 EKKGAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAI 174

Query: 179 EINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEH 237
           EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+L++V+P A +I EH
Sbjct: 175 EINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQPRAQKIAEH 233

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Mus musculus (taxid: 10090)

>sp|Q5RF31|F10A1_PONAB Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1

 Score =  215 bits (547), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 171/239 (71%), Gaps = 7/239 (2%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD  KV EL+ F+  CK +PS+L    + F R+++ES+  KVP  A ++ KSE      +
Sbjct: 1   MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPP-ATQKAKSEEN---TK 56

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGD-IVEADNDPPQKMGDSSAEVTDEKREAAA 119
           E + + ++VE E+ + +E    ESD+E++ + ++E D D PQ+MGD +AE+T+E  + A 
Sbjct: 57  EEKPDSKKVE-EDLKADEPSSEESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQAN 115

Query: 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAAL 178
           + K  A+EA+++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+
Sbjct: 116 DKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAI 175

Query: 179 EINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEH 237
           EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A +I EH
Sbjct: 176 EINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPKAQKIAEH 234

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Pongo abelii (taxid: 9601)

>sp|P50502|F10A1_HUMAN Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2

 Score =  215 bits (547), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 171/239 (71%), Gaps = 7/239 (2%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD  KV EL+ F+  CK +PS+L    + F R+++ES+  KVP  A ++ KSE      +
Sbjct: 1   MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPP-ATQKAKSEEN---TK 56

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGD-IVEADNDPPQKMGDSSAEVTDEKREAAA 119
           E + + ++VE E+ + +E    ESD+E++ + ++E D D PQ+MGD +AE+T+E  + A 
Sbjct: 57  EEKPDSKKVE-EDLKADEPSSEESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQAN 115

Query: 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAAL 178
           + K  A+EA+++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+
Sbjct: 116 DKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAI 175

Query: 179 EINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEH 237
           EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A +I EH
Sbjct: 176 EINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEH 234

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Homo sapiens (taxid: 9606)

>sp|P50503|F10A1_RAT Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/239 (46%), Positives = 164/239 (68%), Gaps = 8/239 (3%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD  KV EL+ F+  C+ +PS+L    + F R+++ES+  KVP   +K  KSE      +
Sbjct: 1   MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHK-AKSEENTKEEK 59

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGD-IVEADNDPPQKMGDSSAEVTDEKREAAA 119
             +  E  ++ EE   EE     SD+E++ + ++EAD D PQ+MGD +AE+T+   + A 
Sbjct: 60  RDKTTEDNIKTEEPSSEE-----SDLEIDNEGVIEADTDAPQEMGDENAEITEAMMDEAN 114

Query: 120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAAL 178
           E K  A++A+++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+
Sbjct: 115 EKKGAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAI 174

Query: 179 EINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEH 237
           EINPDSA+ YK RG AH +LGHWEEA  DL +A K+D+DE+ +A+L++V+P A +I EH
Sbjct: 175 EINPDSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQPRAQKIAEH 233

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
224071579	410	predicted protein [Populus trichocarpa]	0.959	0.934	0.708	1e-124
224125128	397	predicted protein [Populus trichocarpa]	0.969	0.974	0.711	1e-121
115443603	408	Os02g0100300 [Oryza sativa Japonica Grou	0.974	0.953	0.611	1e-120
296085089	386	unnamed protein product [Vitis vinifera]	0.962	0.994	0.665	1e-116
116780898	401	unknown [Picea sitchensis]	0.959	0.955	0.618	1e-111
218189855	350	hypothetical protein OsI_05447 [Oryza sa	0.736	0.84	0.609	1e-106
166407425	417	Hsp70-interacting protein 1 [Vitis labru	0.739	0.707	0.689	1e-104
18415982	441	HSP70-interacting protein 1 [Arabidopsis	0.691	0.625	0.744	1e-103
297803858	425	hypothetical protein ARALYDRAFT_492602 [	0.691	0.649	0.741	1e-103
147834848	374	hypothetical protein VITISV_043507 [Viti	0.696	0.743	0.702	1e-97

>gi|224071579|ref|XP_002303525.1| predicted protein [Populus trichocarpa] gi|222840957|gb|EEE78504.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 301/425 (70%), Positives = 338/425 (79%), Gaps = 42/425 (9%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MDA K++ELKQFI+QCKSNPSILADPSLSFF DYLESL AK+P  A+K   S+ ++ VVE
Sbjct: 2   MDATKLEELKQFIEQCKSNPSILADPSLSFFHDYLESLGAKLPACAHKHDDSKSKSYVVE 61

Query: 61  ESEEEEQRVEVE----EKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKRE 116
           ES+EE ++ E +     +EEEE+EI+ESD+ELEG+ VE DNDPPQKMGD S EVT+E R+
Sbjct: 62  ESDEEMEKEESQGEPEVEEEEEEEIIESDVELEGETVEPDNDPPQKMGDPSVEVTEESRD 121

Query: 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDAT 175
           A+ EAKAKAMEAISEGKL+EAIE  TEAI LNP SAIMYATRA+VYIKMK+PNAAIRDA 
Sbjct: 122 ASQEAKAKAMEAISEGKLEEAIEHLTEAISLNPTSAIMYATRATVYIKMKRPNAAIRDAN 181

Query: 176 AALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIE 235
           AALEIN DSAKGYK+RGMA AMLG WE+A  DLH+ASK+D+DEEI+AVLKKVEPNA RIE
Sbjct: 182 AALEINLDSAKGYKSRGMARAMLGQWEDAAKDLHLASKLDYDEEISAVLKKVEPNAHRIE 241

Query: 236 EHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPG------- 288
           EHRRKY+RL +ERE+RK ERER RRRA+AQA YEKAKK+EQSSSS +PGGMP        
Sbjct: 242 EHRRKYERLHKEREDRKAERERQRRRAKAQAEYEKAKKQEQSSSSRKPGGMPSGFPGGFP 301

Query: 289 --------------GAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMP 334
                           GGMPGG PGGMPGG PGGMPGGFPG MPGG P            
Sbjct: 302 GGMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGGFPGAMPGGMP------------ 349

Query: 335 GGGPGNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAK 394
               GNVDFSKILNDPELMAAFSDPE+MAALQDVMKNPANLA+HQ NPKVAPIIAKMM K
Sbjct: 350 ----GNVDFSKILNDPELMAAFSDPEIMAALQDVMKNPANLAKHQGNPKVAPIIAKMMGK 405

Query: 395 FGGPK 399
           F GPK
Sbjct: 406 FAGPK 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125128|ref|XP_002329900.1| predicted protein [Populus trichocarpa] gi|222871137|gb|EEF08268.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 291/409 (71%), Positives = 324/409 (79%), Gaps = 22/409 (5%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MDA  V+ELKQFI+QCKS+PSILADPSL FFRDYLESL AK+P  A K+      +    
Sbjct: 1   MDATTVEELKQFIEQCKSSPSILADPSLFFFRDYLESLGAKLPASARKKSYVVEESDEEM 60

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAE 120
           E +EE Q     E+EEEE+EI+ESD+ELEGD V+ DNDPPQKMGD S EVTDE R+A+ E
Sbjct: 61  EEKEESQVEPQVEEEEEEEEIIESDLELEGDTVDPDNDPPQKMGDPSVEVTDECRDASQE 120

Query: 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE 179
           AKAKAMEA+S+GKL+EAIE  TEAI LNP SAIMYATRA+VYIKMKKPNAAIRDA AALE
Sbjct: 121 AKAKAMEALSQGKLEEAIEHLTEAISLNPTSAIMYATRATVYIKMKKPNAAIRDANAALE 180

Query: 180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRR 239
           INPDSAKGYK+RGMA AMLG WE+A  DLH+ASK+D+DEEI+AVLKKVEPNA RIEEHRR
Sbjct: 181 INPDSAKGYKSRGMAQAMLGQWEDAAKDLHLASKLDYDEEISAVLKKVEPNAHRIEEHRR 240

Query: 240 KYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSER---------PGGMPGGA 290
           KY+RL +ER +RK ERER RRRA+AQA YEKAKK+EQSSSS +          G   G  
Sbjct: 241 KYERLHKERGDRKAERERQRRRAKAQADYEKAKKQEQSSSSRKPGGMPGGFPGGMPGGFP 300

Query: 291 GGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDP 350
           G MPGG PGG PG  PGGMPGG PGG PG  PGGM            PGNVDFSKILNDP
Sbjct: 301 GAMPGGMPGGFPGAMPGGMPGGMPGGFPGAMPGGM------------PGNVDFSKILNDP 348

Query: 351 ELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK 399
           ELMAAFSDPE+MAALQDVMKNPANLA+HQANPKVAP IAKMM KF GP+
Sbjct: 349 ELMAAFSDPEIMAALQDVMKNPANLAKHQANPKVAPTIAKMMGKFAGPQ 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115443603|ref|NP_001045581.1| Os02g0100300 [Oryza sativa Japonica Group] gi|41053216|dbj|BAD08177.1| putative tetratricopeptide repeat (TPR)-containing protein [Oryza sativa Japonica Group] gi|51535306|dbj|BAD38567.1| putative tetratricopeptide repeat (TPR)-containing protein [Oryza sativa Japonica Group] gi|113535112|dbj|BAF07495.1| Os02g0100300 [Oryza sativa Japonica Group] gi|222621984|gb|EEE56116.1| hypothetical protein OsJ_04979 [Oryza sativa Japonica Group]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/414 (61%), Positives = 304/414 (73%), Gaps = 25/414 (6%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MDA +V EL+ F++ CK +PS+LADP+L+FFRDYLESL A +P  A+ +   +P+ S ++
Sbjct: 1   MDASRVGELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAFTKATPKPKPSSMD 60

Query: 61  ESEEE---------EQRVEVEEKEEEEDEIVESDIELEGDIVEADN-DPPQKMGDSSAEV 110
           + ++E           R    E +E + +IVESD+ELEGDIVE+D+ DPPQKMGD S +V
Sbjct: 61  DIDDEYDDDDDDDLNMRDATPEPDELDQDIVESDLELEGDIVESDHQDPPQKMGDPSIDV 120

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNA 169
           T+E R+A+ EAK+KAMEA+SEGKL+EAI+  T+AI+LNP SAIMY TRASV+IKMKKP A
Sbjct: 121 TEENRDASQEAKSKAMEAMSEGKLEEAIDHLTKAILLNPLSAIMYGTRASVFIKMKKPVA 180

Query: 170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEP 229
           AIRDA AALEINPDSAKGYKTRGMA+AMLG WEEA HDLH AS +D+D+EI AVLKKVEP
Sbjct: 181 AIRDANAALEINPDSAKGYKTRGMAYAMLGKWEEAAHDLHTASNMDYDDEINAVLKKVEP 240

Query: 230 NALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMP-- 287
           NA +I EHRRKY+RLR+EREE++ ER+R  RRAEAQAAY+KAK++EQSSS    G  P  
Sbjct: 241 NAHKIMEHRRKYERLRKEREEKRAERDRFHRRAEAQAAYDKAKRKEQSSSRSSGGASPRG 300

Query: 288 ----GGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDF 343
               G  GG   G   G          G   G   G   G MPGG         PGNVD 
Sbjct: 301 GFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGGV--------PGNVDM 352

Query: 344 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 397
           SKILNDP+LMAAF DPEVMAALQDVM NPA+ A+HQANPKV PIIAKMMAKF G
Sbjct: 353 SKILNDPDLMAAFGDPEVMAALQDVMNNPASFARHQANPKVGPIIAKMMAKFNG 406

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085089|emb|CBI28504.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 267/401 (66%), Positives = 319/401 (79%), Gaps = 17/401 (4%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD +K+ +LKQFI+QCK++PSIL++P+LSFFRDYLESL A +P  AYK   S+ +  VVE
Sbjct: 1   MDGDKLDQLKQFIEQCKADPSILSNPTLSFFRDYLESLGADLPPSAYKSEDSKSKNYVVE 60

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAE 120
           ES+EE   ++  ++E ++  IVESD+ELEGD V+ DNDPPQKMGD + EV++E R+A+  
Sbjct: 61  ESDEEMADLQDPQEEGDDSNIVESDVELEGDTVDPDNDPPQKMGDPTVEVSEEDRDASQM 120

Query: 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE 179
           AK +AMEAISEG L+EAI   TEAI+LNP SAIMY TR     ++ + N  +       +
Sbjct: 121 AKGQAMEAISEGNLEEAIGHLTEAILLNPTSAIMYGTRGRTLFEILEHNLHLNFFFWLSK 180

Query: 180 -INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHR 238
            INPDSAKGYK+RG+A AMLG WEEA  DLH+ASK+D+DEEI+AVLKKVEPNA RIEEHR
Sbjct: 181 GINPDSAKGYKSRGIARAMLGQWEEAAKDLHLASKLDYDEEISAVLKKVEPNAHRIEEHR 240

Query: 239 RKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFP 298
           RKY+RLR+E+E++K+ERER RRRA+AQAAYEKAKK+EQSSSS                  
Sbjct: 241 RKYERLRKEKEDKKIERERQRRRAQAQAAYEKAKKQEQSSSSRT---------------H 285

Query: 299 GGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAAFSD 358
            GMP GFPGGMP GFPGGMPGGFPGGMPGG PGGMPGG PGNVD+SKILNDPELMAAF D
Sbjct: 286 EGMPEGFPGGMPEGFPGGMPGGFPGGMPGGSPGGMPGGMPGNVDYSKILNDPELMAAFKD 345

Query: 359 PEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK 399
           PEVM+ALQDVMKNPANLA+HQANPKVAP+IAKMMAKF GPK
Sbjct: 346 PEVMSALQDVMKNPANLAKHQANPKVAPVIAKMMAKFAGPK 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116780898|gb|ABK21869.1| unknown [Picea sitchensis]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 256/414 (61%), Positives = 312/414 (75%), Gaps = 31/414 (7%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKS----EPRA 56
           MDA KV +LK FI QC+SNP++L DPSL FFRDYLE L AKVP  AY +G+S    + + 
Sbjct: 1   MDASKVNQLKLFIKQCESNPAVLQDPSLKFFRDYLEKLGAKVPASAYGKGESAKKPDAKE 60

Query: 57  SVVEESEEEEQRVE-----------VEEKEEEEDEIVESDIELEGD-IVEADNDPPQKMG 104
           + V+ES+++   +E           V E+   +DEIVES++EL+ + ++E DNDPPQKMG
Sbjct: 61  TFVDESDDDMPELEEQFGTSSTAPKVPEETASDDEIVESEVELDNEGVIEPDNDPPQKMG 120

Query: 105 DSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIK 163
           D S +VTDEKR+ A  AK+KAMEA+++G LDEA+   TEAI  NP SAI+YATRASV++K
Sbjct: 121 DPSVDVTDEKRDEAQIAKSKAMEAMADGDLDEAVNHLTEAIECNPTSAIIYATRASVFVK 180

Query: 164 MKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAV 223
           MKKPNAAIRDA AA++INPDSAKGYK RGMA AMLGHWEEA  DLH+AS++D+DEEI+ V
Sbjct: 181 MKKPNAAIRDANAAIKINPDSAKGYKWRGMARAMLGHWEEAAKDLHLASRLDYDEEISVV 240

Query: 224 LKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERP 283
           LKKVEPN  +IE+H RKY+RLRRE++ERK ERER RRRAEAQAAYEKAKK+EQ+S+ ++P
Sbjct: 241 LKKVEPNVHKIEDHHRKYERLRREKDERKKERERQRRRAEAQAAYEKAKKQEQASTCKKP 300

Query: 284 GGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDF 343
            G  GG  G              G   G   G   GG P G PGG PGG PGG PG+VD 
Sbjct: 301 CGTSGGCSG--------------GMPGGFPGGMPAGGMPSGFPGGMPGGFPGGMPGDVDM 346

Query: 344 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 397
           SKILNDPELMAAFSDP++M ALQDVM NPANLA++QANPK+AP+IAKMM KF G
Sbjct: 347 SKILNDPELMAAFSDPDIMTALQDVMTNPANLAKYQANPKIAPVIAKMMGKFAG 400

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189855|gb|EEC72282.1| hypothetical protein OsI_05447 [Oryza sativa Indica Group]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/356 (60%), Positives = 250/356 (70%), Gaps = 62/356 (17%)

Query: 73  EKEEEEDEIVESDIELEGDIVEADN-DPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISE 131
           E +E + +IVESD+ELEGDIVE+D+ DPPQKMGD S +VT+E R+A+ EAK+KAMEA+SE
Sbjct: 24  EPDELDQDIVESDLELEGDIVESDHQDPPQKMGDPSIDVTEENRDASQEAKSKAMEAMSE 83

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           GKL+EAI+  T+AI+LNP SAIMY TRASV+IKMKKP AAIRDA AALEINPDSAKGYKT
Sbjct: 84  GKLEEAIDHLTKAILLNPLSAIMYGTRASVFIKMKKPVAAIRDANAALEINPDSAKGYKT 143

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREE 250
           RGMA+AMLG WEEA HDLH AS +D+D+EI AVLKKVEPNA +I EHRRKY+RLR+EREE
Sbjct: 144 RGMAYAMLGKWEEAAHDLHTASNMDYDDEINAVLKKVEPNAHKIMEHRRKYERLRKEREE 203

Query: 251 RKVERERLRRRAEAQAAYEKAKKEEQ-----------------------------SSSSE 281
           ++ ER+R  RRAEAQAAY+KAK++EQ                                  
Sbjct: 204 KRAERDRFHRRAEAQAAYDKAKRKEQSSSRSSGGASPSGGFPGGMPGGGFPGGMPGGGFP 263

Query: 282 RPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNV 341
                 G   GMPGGFPG       G MPGG                         PGNV
Sbjct: 264 GGMPGGGFPSGMPGGFPG-------GAMPGGV------------------------PGNV 292

Query: 342 DFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 397
           D SKILNDP+LMAAF DPEVMAALQDVM NPA+ A+HQANPKV PIIAKMMAKF G
Sbjct: 293 DMSKILNDPDLMAAFGDPEVMAALQDVMNNPASFARHQANPKVGPIIAKMMAKFNG 348

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166407425|gb|ABY87519.1| Hsp70-interacting protein 1 [Vitis labrusca]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/303 (68%), Positives = 253/303 (83%), Gaps = 8/303 (2%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD +K+ +LKQFI+QCK++PSIL++P+LSFFRDYLESL A +P  AYK G S+ +  VVE
Sbjct: 1   MDGDKLDQLKQFIEQCKADPSILSNPTLSFFRDYLESLGADLPPSAYKSGDSKSKNYVVE 60

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAE 120
           ES+EE   ++  ++E ++ +IVESD+ELEGD V+ DNDPPQKMGD + EV++E R+A+  
Sbjct: 61  ESDEEMADLQDPQEEGDDSDIVESDVELEGDTVDPDNDPPQKMGDPTVEVSEEDRDASQM 120

Query: 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE 179
           AK +AMEAISEGKL+EAI   TEAI+LNP SAIMY TRASVYIKMKKPNAAIRDA AALE
Sbjct: 121 AKGQAMEAISEGKLEEAIGHLTEAILLNPTSAIMYGTRASVYIKMKKPNAAIRDANAALE 180

Query: 180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRR 239
           INPDSAKGYK+RG+A AMLG WEEA  DLH+ASK+D+DEEI+AVLKKVEPNA RIEEHRR
Sbjct: 181 INPDSAKGYKSRGIARAMLGQWEEAAKDLHLASKLDYDEEISAVLKKVEPNAHRIEEHRR 240

Query: 240 KYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFPG 299
           KY+RLR+E+E++K+ERER RRRA+AQAAYEKAKK+EQSSSS           GMP GFPG
Sbjct: 241 KYERLRKEKEDKKIERERQRRRAQAQAAYEKAKKQEQSSSSR-------THEGMPEGFPG 293

Query: 300 GMP 302
           GMP
Sbjct: 294 GMP 296

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415982|ref|NP_567663.1| HSP70-interacting protein 1 [Arabidopsis thaliana] gi|75331763|sp|Q93YR3.1|F10AL_ARATH RecName: Full=FAM10 family protein At4g22670 gi|16648867|gb|AAL24285.1| HSP associated protein like [Arabidopsis thaliana] gi|21593067|gb|AAM65016.1| HSP associated protein like [Arabidopsis thaliana] gi|28058906|gb|AAO29967.1| HSP associated protein like [Arabidopsis thaliana] gi|332659238|gb|AEE84638.1| HSP70-interacting protein 1 [Arabidopsis thaliana]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/282 (74%), Positives = 237/282 (84%), Gaps = 6/282 (2%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGK-SEPRASVV 59
           MD+ K+ ELK FIDQCKS+PS+L  PSLSFFRDYLESL AK+PT  ++E K ++PR+ VV
Sbjct: 1   MDSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPTGVHEEDKDTKPRSFVV 60

Query: 60  EESE----EEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKR 115
           EES+    E E+     E+EEEEDEIVESD+ELEGD VE DNDPPQKMGDSS EVTDE R
Sbjct: 61  EESDDDMDETEEVKPKVEEEEEEDEIVESDVELEGDTVEPDNDPPQKMGDSSVEVTDENR 120

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDA 174
           EAA EAK KAMEA+SEG  DEAIE  T AI LNP SAIMY  RASVYIK+KKPNAAIRDA
Sbjct: 121 EAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNPTSAIMYGNRASVYIKLKKPNAAIRDA 180

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 234
            AALEINPDSAKGYK+RGMA AMLG W EA  DLH+AS ID+DEEI+AVLKKVEPNA ++
Sbjct: 181 NAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKL 240

Query: 235 EEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQ 276
           EEHRRKYDRLR+ERE++K ER+RLRRRAEAQAAY+KAKKEEQ
Sbjct: 241 EEHRRKYDRLRKEREDKKAERDRLRRRAEAQAAYDKAKKEEQ 282

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803858|ref|XP_002869813.1| hypothetical protein ARALYDRAFT_492602 [Arabidopsis lyrata subsp. lyrata] gi|297315649|gb|EFH46072.1| hypothetical protein ARALYDRAFT_492602 [Arabidopsis lyrata subsp. lyrata]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/282 (74%), Positives = 236/282 (83%), Gaps = 6/282 (2%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGK-SEPRASVV 59
           MD+ K+ ELK FIDQCKS+PS+L  PSLSFFRDYLESL AK+PT  + E K ++ R+ VV
Sbjct: 1   MDSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPTGVHDEEKDTKTRSFVV 60

Query: 60  EES----EEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKR 115
           EES    EE E+     E+EEE+DEIVESD+ELEGD VE DNDPPQKMGDSS EVTDE R
Sbjct: 61  EESDDDMEETEEPKPKVEEEEEDDEIVESDVELEGDTVEPDNDPPQKMGDSSVEVTDENR 120

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDA 174
           EAA EAK KAMEA+SEG  DEAIE  T+AI LNP SAIMY  RASVYIK+KKPNAAIRDA
Sbjct: 121 EAAQEAKGKAMEALSEGNFDEAIEHLTQAITLNPTSAIMYGNRASVYIKLKKPNAAIRDA 180

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 234
            AALEINPDSAKGYK+RGMA AMLG W EA  DLH+AS ID+DEEI+AVLKKVEPNA ++
Sbjct: 181 NAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKL 240

Query: 235 EEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQ 276
           EEHRRKYDRLR+ERE++K ER+RLRRRAEAQAAY+KAKKEEQ
Sbjct: 241 EEHRRKYDRLRKEREDKKAERDRLRRRAEAQAAYDKAKKEEQ 282

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834848|emb|CAN68309.1| hypothetical protein VITISV_043507 [Vitis vinifera]

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/279 (70%), Positives = 240/279 (86%), Gaps = 1/279 (0%)

Query: 1   MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVE 60
           MD +K+ +LKQFI+QCK++PSIL++P+LSFFRDYLESL A +P  AYK G S+ +  VVE
Sbjct: 1   MDGDKLDQLKQFIEQCKADPSILSNPTLSFFRDYLESLGADLPPSAYKSGDSKSKNYVVE 60

Query: 61  ESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAE 120
           ES+EE   ++  ++E ++ +IVESD+ELEGD V+ DNDPPQKMGD + EV++E R+A+  
Sbjct: 61  ESDEEMADLQDPQEEGDDSDIVESDVELEGDTVDPDNDPPQKMGDPTVEVSEEDRDASQM 120

Query: 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE 179
           AK +AMEAISEGKL+EAI   TEAI+LNP SAIMY TRASVYIKMKKPNAAIRDA AALE
Sbjct: 121 AKGQAMEAISEGKLEEAIGHLTEAILLNPTSAIMYGTRASVYIKMKKPNAAIRDANAALE 180

Query: 180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRR 239
           INPDSAKGYK+RG+A AMLG WEEA  DLH+ASK+D+DEEI+AVLKKVEPNA RIEEHRR
Sbjct: 181 INPDSAKGYKSRGIARAMLGQWEEAAKDLHLASKLDYDEEISAVLKKVEPNAHRIEEHRR 240

Query: 240 KYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSS 278
           KY+RLR+E+E++K+ERER RRRA+AQAAYEKAKK+EQ S
Sbjct: 241 KYERLRKEKEDKKIERERQRRRAQAQAAYEKAKKQEQFS 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
TAIR|locus:2132579	441	HIP1 "HSP70-interacting protei	0.363	0.328	0.698	2.6e-93
UNIPROTKB|P50502	369	ST13 "Hsc70-interacting protei	0.358	0.387	0.520	1.7e-65
UNIPROTKB|A7E3S8	369	ST13 "Uncharacterized protein"	0.358	0.387	0.520	4.4e-65
UNIPROTKB|Q8NFI4	369	ST13P5 "Putative protein FAM10	0.358	0.387	0.506	1e-63
UNIPROTKB|Q5ZLF0	361	ST13 "Hsc70-interacting protei	0.358	0.396	0.527	1.6e-63
MGI|MGI:1917606	371	St13 "suppression of tumorigen	0.573	0.617	0.408	9.9e-62
RGD|621312	368	St13 "suppression of tumorigen	0.573	0.622	0.408	4.2e-61
TAIR|locus:2088560	380	TDX "tetraticopeptide domain-c	0.360	0.378	0.655	2.9e-58
WB|WBGene00011735	422	hip-1 [Caenorhabditis elegans	0.358	0.338	0.430	9.2e-48
FB|FBgn0260484	377	HIP "Hsc/Hsp70-interacting pro	0.358	0.379	0.458	1.1e-46

TAIR|locus:2132579 HIP1 "HSP70-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 2.6e-93, Sum P(3) = 2.6e-93
 Identities = 102/146 (69%), Positives = 110/146 (75%)

Query:    90 GDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNP 149
             GD VE DNDPPQKMGDSS EVTD                +SEG  DEAIE  T AI LNP
Sbjct:    95 GDTVEPDNDPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNP 154

Query:   150 -SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDL 208
              SAIMY  RASVYIK+KKPNAAIRDA AALEINPDSAKGYK+RGMA AMLG W EA  DL
Sbjct:   155 TSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRGMARAMLGEWAEAAKDL 214

Query:   209 HVASKIDFDEEIAAVLKKVEPNALRI 234
             H+AS ID+DEEI+AVLKKVEPNA ++
Sbjct:   215 HLASTIDYDEEISAVLKKVEPNAHKL 240

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|P50502 ST13 "Hsc70-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
 Identities = 75/144 (52%), Positives = 105/144 (72%)

Query:    92 IVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS- 150
             ++E D D PQ+MGD +AE+T+                +++G+L +AI+L T+AI LNP  
Sbjct:    88 VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRL 147

Query:   151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210
             AI+YA RASV++K++KPNAAIRD   A+EINPDSA+ YK RG AH +LGHWEEA HDL +
Sbjct:   148 AILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207

Query:   211 ASKIDFDEEIAAVLKKVEPNALRI 234
             A K+D+DE+ +A+LK+V+P A +I
Sbjct:   208 ACKLDYDEDASAMLKEVQPRAQKI 231

GO:0005829 "cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032564 "dATP binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0061084 "negative regulation of protein refolding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A7E3S8 ST13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 398 (145.2 bits), Expect = 4.4e-65, Sum P(3) = 4.4e-65
 Identities = 75/144 (52%), Positives = 104/144 (72%)

Query:    92 IVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS- 150
             ++E D D PQ+MGD + E+T+                +++G+L +AI+L T+AI LNP  
Sbjct:    88 VIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRL 147

Query:   151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210
             AI+YA RASV+IK++KPNAAIRD   A+EINPDSA+ YK RG AH +LGHWEEA HDL +
Sbjct:   148 AILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207

Query:   211 ASKIDFDEEIAAVLKKVEPNALRI 234
             A K+D+DE+ +A+LK+V+P A +I
Sbjct:   208 ACKLDYDEDASAMLKEVQPRAQKI 231

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|Q8NFI4 ST13P5 "Putative protein FAM10A5" [Homo sapiens (taxid:9606)]

 Score = 390 (142.3 bits), Expect = 1.0e-63, Sum P(3) = 1.0e-63
 Identities = 73/144 (50%), Positives = 103/144 (71%)

Query:    92 IVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS- 150
             ++E D D PQ+MGD + E+T+                +++G+L +AI+L T+AI LNP  
Sbjct:    88 VIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIEVLNDGELQKAIDLFTDAIKLNPRL 147

Query:   151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210
             AI+YA RASV++K++KPNAAI+D   A+EINPDSA+ YK RG AH +LGHWEEA HDL  
Sbjct:   148 AILYAKRASVFVKLQKPNAAIQDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAF 207

Query:   211 ASKIDFDEEIAAVLKKVEPNALRI 234
             A K+D+DE+ +A+LK+V+P A +I
Sbjct:   208 ACKLDYDEDASAMLKEVQPRAQKI 231

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZLF0 ST13 "Hsc70-interacting protein" [Gallus gallus (taxid:9031)]

 Score = 400 (145.9 bits), Expect = 1.6e-63, Sum P(3) = 1.6e-63
 Identities = 76/144 (52%), Positives = 103/144 (71%)

Query:    92 IVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS- 150
             ++E DND PQ+MGD + EVT+                +SEG L +A+ L T+AI LNP  
Sbjct:    86 VIEPDNDDPQEMGDENVEVTEEMMDQANEKKMEAINALSEGDLQKAVNLFTDAIKLNPCL 145

Query:   151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210
             AI+YA RASV++K++KPNAAIRD   A++INPDSA+ YK RG AH +LGHWEEA HDL +
Sbjct:   146 AILYAKRASVFVKLQKPNAAIRDCDRAIKINPDSAQTYKWRGKAHRLLGHWEEAAHDLAL 205

Query:   211 ASKIDFDEEIAAVLKKVEPNALRI 234
             A K+D+DE+ +A+LK+V+P A +I
Sbjct:   206 ACKLDYDEDASAMLKEVQPRAQKI 229

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1917606 St13 "suppression of tumorigenicity 13" [Mus musculus (taxid:10090)]

 Score = 472 (171.2 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
 Identities = 96/235 (40%), Positives = 138/235 (58%)

Query:     1 MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASXXX 60
             MD  KV EL+ F+  C+ +PS+L    + F R+++ES+  KVP   +K  KSE       
Sbjct:     1 MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHK-AKSEENTKEEK 59

Query:    61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXX 120
                                            ++E D D PQ+MGD +AE+T+        
Sbjct:    60 RDKTTEENIKTEELSSEESDLEIDNEG----VIEPDTDAPQEMGDENAEITEEMMDEANE 115

Query:   121 XXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALE 179
                     +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+E
Sbjct:   116 KKGAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIE 175

Query:   180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 234
             INPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+L++V+P A +I
Sbjct:   176 INPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQPRAQKI 230

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032564 "dATP binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0061084 "negative regulation of protein refolding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

RGD|621312 St13 "suppression of tumorigenicity 13" [Rattus norvegicus (taxid:10116)]

 Score = 469 (170.2 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 96/235 (40%), Positives = 138/235 (58%)

Query:     1 MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASXXX 60
             MD  KV EL+ F+  C+ +PS+L    + F R+++ES+  KVP   +K  KSE       
Sbjct:     1 MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHK-AKSEENTKEEK 59

Query:    61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXX 120
                                            ++EAD D PQ+MGD +AE+T+        
Sbjct:    60 RDKTTEDNIKTEEPSSEESDLEIDNEG----VIEADTDAPQEMGDENAEITEAMMDEANE 115

Query:   121 XXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALE 179
                     +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+E
Sbjct:   116 KKGAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIE 175

Query:   180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRI 234
             INPDSA+ YK RG AH +LGHWEEA  DL +A K+D+DE+ +A+L++V+P A +I
Sbjct:   176 INPDSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQPRAQKI 230

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IDA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA;IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0032564 "dATP binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0061084 "negative regulation of protein refolding" evidence=IDA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

TAIR|locus:2088560 TDX "tetraticopeptide domain-containing thioredoxin" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 95/145 (65%), Positives = 111/145 (76%)

Query:    91 DIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNP- 149
             D+VE DN+PPQ MGD +AEVTD                IS+G+ DEAIE  T+A+MLNP 
Sbjct:    85 DVVEPDNEPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIEHLTKAVMLNPT 144

Query:   150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH 209
             SAI+YATRASV++K+KKPNAAIRDA  AL+ N DSAKGYK+RGMA AMLG WEEA  DLH
Sbjct:   145 SAILYATRASVFLKVKKPNAAIRDANVALQFNSDSAKGYKSRGMAKAMLGQWEEAAADLH 204

Query:   210 VASKIDFDEEIAAVLKKVEPNALRI 234
             VASK+D+DEEI  +LKKVEPNA RI
Sbjct:   205 VASKLDYDEEIGTMLKKVEPNAKRI 229

GO:0005737 "cytoplasm" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0010286 "heat acclimation" evidence=IMP

GO:0051259 "protein oligomerization" evidence=IDA

WB|WBGene00011735 hip-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 278 (102.9 bits), Expect = 9.2e-48, Sum P(3) = 9.2e-48
 Identities = 62/144 (43%), Positives = 83/144 (57%)

Query:    92 IVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNP-S 150
             ++E +      MGDS+ E T+                 S G  D A+   T AI  NP S
Sbjct:    89 VIEPEEAVALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAAIEANPGS 148

Query:   151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210
             A+++A RA+V +K+K+P AAI D   A+ INPDSA+GYK RG A+ +LG W EA  DL  
Sbjct:   149 AMLHAKRANVLLKLKRPVAAIADCDKAISINPDSAQGYKFRGRANRLLGKWVEAKTDLAT 208

Query:   211 ASKIDFDEEIAAVLKKVEPNALRI 234
             A K+D+DE     LK+VEPNA +I
Sbjct:   209 ACKLDYDEAANEWLKEVEPNAHKI 232

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB|FBgn0260484 HIP "Hsc/Hsp70-interacting protein" [Drosophila melanogaster (taxid:7227)]

 Score = 314 (115.6 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
 Identities = 66/144 (45%), Positives = 87/144 (60%)

Query:    92 IVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNP-S 150
             ++EAD+DP Q MG+ S + T+                  + K DEAI L T+AI L+P +
Sbjct:   100 VIEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYTKAIELSPGN 159

Query:   151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210
             A+ +A R   ++K+KKPNA IRD   ALE+N D A GYK RG A  +LG +E A HDL  
Sbjct:   160 ALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLRQ 219

Query:   211 ASKIDFDEEIAAVLKKVEPNALRI 234
             A K+DFDEE    LK+V PNA +I
Sbjct:   220 ACKLDFDEETDEWLKEVTPNAKKI 243

GO:0005829 "cytosol" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86DS1	F10A2_DROME	No assigned EC number	0.3492	0.8270	0.8753	yes	no
Q93YR3	F10AL_ARATH	No assigned EC number	0.7446	0.6917	0.6258	yes	no
Q5ZLF0	F10A1_CHICK	No assigned EC number	0.4507	0.8771	0.9695	yes	no
C4NYP8	F10A1_DROME	No assigned EC number	0.3492	0.8270	0.8753	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0018018701 hypothetical protein (411 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-16
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	9e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-10
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-09
smart00727	41	smart00727, STI1, Heat shock chaperonin-binding mo	1e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-06
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	3e-05
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	4e-05
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	4e-05
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	5e-05
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	9e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
pfam07020	83	pfam07020, Orthopox_C10L, Orthopoxvirus C10L prote	4e-04
pfam13371	73	pfam13371, TPR_9, Tetratricopeptide repeat	5e-04
pfam07172	91	pfam07172, GRP, Glycine rich protein family	6e-04
pfam04959	211	pfam04959, ARS2, Arsenite-resistance protein 2	6e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	8e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
PLN02316	1036	PLN02316, PLN02316, synthase/transferase	0.001
smart00157	218	smart00157, PRP, Major prion protein	0.001
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI 180
                     G  DEA+E   +A+ L+P +A  Y   A+ Y K+ K   A+ D   ALE+
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 181 NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           +PD+AK Y   G+A+  LG +EEA+     A ++D
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 66.2 bits (161), Expect = 9e-12
 Identities = 49/183 (26%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 47  YKEGKSEPRASVVEESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDS 106
           Y+    + R S  + S++E ++ +  EKE E     +     +   VE  ++ P+    S
Sbjct: 55  YQRKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESS 114

Query: 107 SAEVT-DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMK 165
            A ++ +E+++ AA+ K K  +A      ++AI+L ++AI   P  + Y+ RA+ +  + 
Sbjct: 115 VANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALG 174

Query: 166 KPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID--FDEEIAAV 223
                + D TAALE++PD +K    R  A+  LG + +A+ DL  +  ID   +E+ A  
Sbjct: 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234

Query: 224 LKK 226
           +++
Sbjct: 235 VER 237

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM-KKPNAAIRD 173
           + A   K         G  DEAIE   +A+ L+P +A  Y   A  Y+K+ K    A+ D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 174 ATAALEINP 182
              ALE++P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDAT 175
            A + + KA EA  +     A++L T+AI L+P+ A +YA RA   IK+     A+ DA 
Sbjct: 1   MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADAN 60

Query: 176 AALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218
            A+E++P  AK Y  +G A   L  ++ A   L   + +   +
Sbjct: 61  KAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD 103

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG-HWEEAVHDL 208
           +A       +   K+   + AI     ALE++PD+A+ Y    +A+  LG  +EEA+ DL
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 209 HVASKID 215
             A ++D
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|128966 smart00727, STI1, Heat shock chaperonin-binding motif

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 349 DPELMAAFSDPEVMAALQDVMKNPANLAQH-QANPKVAPII 388
           DPE+     +P+V + LQD+ +NP  LAQ  Q NP++  +I
Sbjct: 1   DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI 41

Length = 41

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 109 EVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKK 166
           E+  E  E A    A      + G+ +EA+EL  +A+ LNP   A        +Y+K+ K
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217

Query: 167 PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLK 225
              A+     ALE++PD+A+      +    LG +EEA+  L  A ++D D   +   L 
Sbjct: 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALL 277

Query: 226 KVEPNALRIEEH 237
            +   AL + E 
Sbjct: 278 LLLAEALELLEK 289

Length = 291

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 20/39 (51%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 300 GMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGP 338
              GG PGGMPGG PGGMPG   G  P G        GP
Sbjct: 615 AAGGGMPGGMPGGMPGGMPG---GAGPAGAGA---SSGP 647

Length = 653

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 18/32 (56%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 308 GMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPG 339
              GG PGGMPGG PGGMPG   G  P G   
Sbjct: 615 AAGGGMPGGMPGGMPGGMPG---GAGPAGAGA 643

Length = 653

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 292 GMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGG 324
              GG PGGMPGG PGGMPG   G  P G    
Sbjct: 615 AAGGGMPGGMPGGMPGGMPG---GAGPAGAGAS 644

Length = 653

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 28/57 (49%), Positives = 28/57 (49%)

Query: 285 GMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNV 341
           GM GG GG  GG  GG  GG  GG   G   G   G   G  GG  GG  GGGPG V
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKV 57

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 23/58 (39%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 284 GGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNV 341
           GG  GG GG  GG  GG  GG   G   G      G   GG  GG  GG  GG    +
Sbjct: 4   GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGR---GRGRGGGGGGRGGGGGGGPGKVI 58

Length = 293

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
              GK +EA+E   +A+ L+P  A  Y      Y K+ K   A+     ALE++P+
Sbjct: 45  YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|115660 pfam07020, Orthopox_C10L, Orthopoxvirus C10L protein

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 21/54 (38%), Positives = 25/54 (46%)

Query: 279 SSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGG 332
           + +RP     G GGM GG    M  G   G   G   G+ GG  GG+ GG  GG
Sbjct: 26  AVKRPKTYSSGGGGMWGGLEKRMCVGGGSGGFWGGSSGVKGGVNGGVNGGVNGG 79

This family consists of several Orthopoxvirus C10L proteins. C10L viral protein can play an important role in vaccinia virus evasion of the host immune system. It may consist in the blockade of IL-1 receptors by the C10L protein, a homologue of the IL-1 Ra. Length = 83

>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDL 208
           ++Y++ +    A+      L + PD     + RG+ +A LG ++ A+ DL
Sbjct: 3   AIYLREEDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADL 52

Length = 73

>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 263 EAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFP 322
           E  AA     ++ +S +  +     GG GG  GG  GG  GG   G  GG+ GG  GG+P
Sbjct: 22  EVAAADLSNTEKSESENEVQDDKYGGGGGGYGGGGGGGYGGGGYYGGGGGYGGG-GGGYP 80

Query: 323 GGMPGGFPGG 332
           GG  GG+ GG
Sbjct: 81  GGGGGGYGGG 90

This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91

>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 283 PGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVD 342
           P   PGG      G+P   P      MP G P     G+  G P  FP    GGG GN D
Sbjct: 136 PKPDPGGLAPGLPGYPPQTP---QALMPYGQPRPPMMGYGRGGP-PFPPNQYGGGRGNYD 191

Arsenite is a carcinogenic compound which can act as a co-mutagen by inhibiting DNA repair. Arsenite-resistance protein 2 is thought to play a role in arsenite resistance. Length = 211

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 23/54 (42%), Positives = 23/54 (42%)

Query: 282 RPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPG 335
             G   G  GG  GG  GG  GG  GG  GG  G   GG  GG  GG  GG   
Sbjct: 3   GGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 12/151 (7%)

Query: 79  DEIVESDIEL-EGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAIS------- 130
           ++  E D E   G +      P  K  +S  E      +A    K    EAI+       
Sbjct: 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340

Query: 131 ---EGKLDEAIELSTEAIMLNPSAIM-YATRASVYIKMKKPNAAIRDATAALEINPDSAK 186
              +GK  EA+   +++I L+P     Y  RAS+ +++  P+ A  D   AL++N +   
Sbjct: 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400

Query: 187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217
            Y  R   H + G + +A  D   +  +D D
Sbjct: 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 113 EKREAAAEAK-AKAMEAISEGKLDEAIELSTEAIMLNPSAI-MYATRASVYIKMKKPNAA 170
                +  AK   A  A++E + DEA  L  E +  +P  +     +  + + +     A
Sbjct: 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212

Query: 171 IRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214
           +     A+ + P++              G +EEA        K 
Sbjct: 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKK 256

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 41/252 (16%)

Query: 64  EEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKA 123
           +EE +V+ +   E   E VE++ E+E +  ++D      +    +  TD           
Sbjct: 56  KEEIQVDFQHNSESAVEEVEAEDEIEVEQNQSDVLKSSSIVKEESISTDMDGIDDDSLDR 115

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAI-----RDATAAL 178
           K        +  E  EL+ E    N S      +  VY ++ KP++ I     R  +  L
Sbjct: 116 KLKLERENLRKREIEELAEE----NFSR---GNKLFVYPQVVKPDSDIEVYLNRSLST-L 167

Query: 179 EINPD-----SAKGYK----TRGMAHAMLGH--WEEAVHDLHVASKIDF----------- 216
              PD     +  G++    T  +    LG   W   +H    A K+DF           
Sbjct: 168 ANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDN 227

Query: 217 -DE-----EIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEK 270
            D      EI   + +       +EE RR+ ++L +E  ER+ + E  RRR E +AA E 
Sbjct: 228 NDHKDFCVEIEGGMDEHSFEDFLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEA 287

Query: 271 AKKEEQSSSSER 282
            + + ++   +R
Sbjct: 288 DRAQAKAEVEKR 299

Length = 1036

>gnl|CDD|197548 smart00157, PRP, Major prion protein

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 277 SSSSERPG-GMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPG 335
           +  S  PG G PGG    P G   G P G   G P G   G P G   G P G   G  G
Sbjct: 12  TGGSRYPGQGSPGGNRYPPQGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGG 71

Query: 336 G 336
           G
Sbjct: 72  G 72

The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy. Length = 218

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.8 bits (91), Expect = 0.002
 Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 14/229 (6%)

Query: 63  EEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAK 122
            E  + +E   +     ++    + L   +++             A   +     A    
Sbjct: 40  AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALL 99

Query: 123 AKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRA--SVYIKMKKPNAAIRDATAALEI 180
              +   + GK +EA+EL  +A+ L+P   +           ++     A+     ALE+
Sbjct: 100 NLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL 159

Query: 181 NP---DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAV---------LKKVE 228
           +P   + A+     G     LG +EEA+  L  A K++ D++  A+         L K E
Sbjct: 160 DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219

Query: 229 PNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQS 277
                 E+                +    L R  EA  A EKA + +  
Sbjct: 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 21/214 (9%)

Query: 64   EEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKA 123
            EE+++ E  +K EE+  +     E      EA  +   K+ +   ++  E+ + A EAK 
Sbjct: 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620

Query: 124  KAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
            KA E     +  + +E   +             + +  +K  +    I+ A  A +   D
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEA-------EEKKKAEELKKAEEENKIKAAEEAKKAEED 1673

Query: 184  SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDR 243
              K  + +          +    +   A  +  + E A   KK E    +  E ++K + 
Sbjct: 1674 KKKAEEAK----------KAEEDEKKAAEALKKEAEEA---KKAEELKKKEAEEKKKAEE 1720

Query: 244  LRREREERKVERERLRRRAEAQA-AYEKAKKEEQ 276
            L++  EE K++ E  ++ AE      E+AKK+E+
Sbjct: 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 59/250 (23%), Positives = 99/250 (39%), Gaps = 20/250 (8%)

Query: 40   AKVPTDAYKEGKSEPRASVVEESEEEEQRVEVEEKEEEE----DEIVESDIELEGDIVEA 95
            AK   +A K+ +   +A   ++  EE ++ +  +K+ EE    DE  +   E +    EA
Sbjct: 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502

Query: 96   DNDPPQKMGDSSAEVTDEKREA----AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSA 151
                  K     A+  +E ++A     AE   KA EA    +  +A EL     +     
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562

Query: 152  IMYATRASVYIKMKKPNAAIRDATAALEIN----PDSAKGYKTRGMAHAMLGHWEEAVHD 207
               A  A      +  N A+R A  A +       +  K Y+      A     EEA   
Sbjct: 1563 KKKAEEAKK--AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA-----EEAKKA 1615

Query: 208  LHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQA- 266
                 K +  ++     KKVE    +  E ++K + L++  EE K++     ++AE    
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675

Query: 267  AYEKAKKEEQ 276
              E+AKK E+
Sbjct: 1676 KAEEAKKAEE 1685

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 60/251 (23%), Positives = 104/251 (41%), Gaps = 35/251 (13%)

Query: 40   AKVPTDAYKEGKSEPRASVVEESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADN-- 97
            A+   D  +  + +  A+  ++ E +++    ++K EE+ +  E+  + E D  +AD   
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411

Query: 98   --DPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYA 155
                 +K  D + +  +EK++ A EAK KA EA    K DEA + + EA           
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKK-ADEAKKKAEEA---KKADEAKKKAEEA----------- 1456

Query: 156  TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
                     KK   A + A  A + +    K  + +  A       EEA      A K  
Sbjct: 1457 ---------KKAEEAKKKAEEAKKADEAKKKAEEAK-KADEAKKKAEEAKKKADEAKKAA 1506

Query: 216  FDEEIAAVLKKVE----PNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
              ++ A   KK E     +  +  E  +K D  ++  E++K   + L++  E + A EK 
Sbjct: 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA--DELKKAEELKKAEEKK 1564

Query: 272  KKEEQSSSSER 282
            K EE   + E 
Sbjct: 1565 KAEEAKKAEED 1575

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.93
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.92
KOG0553	304	consensus TPR repeat-containing protein [General f	99.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.88
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.86
KOG4234	271	consensus TPR repeat-containing protein [General f	99.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.74
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.69
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.68
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.66
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.64
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.62
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.54
PRK11189	296	lipoprotein NlpI; Provisional	99.48
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.48
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.47
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.45
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.43
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.42
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.4
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.34
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.34
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.34
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.33
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.29
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.25
KOG0553	304	consensus TPR repeat-containing protein [General f	99.25
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
PRK12370	553	invasion protein regulator; Provisional	99.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.24
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.22
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.21
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.21
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.21
PRK15359	144	type III secretion system chaperone protein SscB;	99.2
KOG4555	175	consensus TPR repeat-containing protein [Function	99.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.19
KOG1125	579	consensus TPR repeat-containing protein [General f	99.16
PRK12370	553	invasion protein regulator; Provisional	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.14
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.14
KOG2076	895	consensus RNA polymerase III transcription factor	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.14
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.13
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.12
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.08
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.07
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.06
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.06
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.06
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.05
PRK11189	296	lipoprotein NlpI; Provisional	99.05
KOG1126	638	consensus DNA-binding cell division cycle control	99.03
PLN02789	320	farnesyltranstransferase	99.02
PRK10803	263	tol-pal system protein YbgF; Provisional	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.99
PRK15331	165	chaperone protein SicA; Provisional	98.98
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.97
PLN02789	320	farnesyltranstransferase	98.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.96
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.96
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.95
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.93
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.91
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.89
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.89
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.86
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.86
PF13512	142	TPR_18: Tetratricopeptide repeat	98.86
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.82
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.81
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.8
PF13371	73	TPR_9: Tetratricopeptide repeat	98.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.77
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.76
PF13371	73	TPR_9: Tetratricopeptide repeat	98.76
KOG1125	579	consensus TPR repeat-containing protein [General f	98.75
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.75
KOG4234	271	consensus TPR repeat-containing protein [General f	98.71
KOG2003	840	consensus TPR repeat-containing protein [General f	98.7
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.7
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.66
PF12688	120	TPR_5: Tetratrico peptide repeat	98.65
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.64
PRK14574	822	hmsH outer membrane protein; Provisional	98.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.61
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.61
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.6
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.6
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.59
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.59
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.57
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.57
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.57
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.55
KOG1310	758	consensus WD40 repeat protein [General function pr	98.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.54
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.53
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.53
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.52
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.52
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.51
KOG2003	840	consensus TPR repeat-containing protein [General f	98.51
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.49
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.47
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.46
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.45
KOG2076	895	consensus RNA polymerase III transcription factor	98.44
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.44
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.43
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.42
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.4
PRK11906	458	transcriptional regulator; Provisional	98.38
smart00727	41	STI1 Heat shock chaperonin-binding motif.	98.38
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.38
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.34
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.34
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.33
PRK11906	458	transcriptional regulator; Provisional	98.32
PRK14574	822	hmsH outer membrane protein; Provisional	98.31
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.3
KOG1129	478	consensus TPR repeat-containing protein [General f	98.29
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.28
PRK10803	263	tol-pal system protein YbgF; Provisional	98.28
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.27
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.27
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.24
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.23
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.19
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.16
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.14
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.11
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.1
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.07
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.07
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.98
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.98
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.98
PF13431	34	TPR_17: Tetratricopeptide repeat	97.97
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.97
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.96
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.96
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.95
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.95
PF12688	120	TPR_5: Tetratrico peptide repeat	97.89
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.88
PF13428	44	TPR_14: Tetratricopeptide repeat	97.87
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.83
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.82
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.8
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.79
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.77
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.77
KOG1129	478	consensus TPR repeat-containing protein [General f	97.75
KOG4555	175	consensus TPR repeat-containing protein [Function	97.74
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.69
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.68
PRK10941	269	hypothetical protein; Provisional	97.68
PF13431	34	TPR_17: Tetratricopeptide repeat	97.67
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.65
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.56
PRK15331	165	chaperone protein SicA; Provisional	97.56
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.54
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.5
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.47
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.44
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.43
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.39
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.33
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.32
PF13428	44	TPR_14: Tetratricopeptide repeat	97.3
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.27
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.26
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.25
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.21
PLN03218	1060	maturation of RBCL 1; Provisional	97.21
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.19
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.18
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.18
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.16
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.15
PLN03218	1060	maturation of RBCL 1; Provisional	97.15
PF13512	142	TPR_18: Tetratricopeptide repeat	97.14
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.12
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.12
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.12
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.11
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.1
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.06
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.02
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.96
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.9
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.81
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.8
PTZ00009	653	heat shock 70 kDa protein; Provisional	96.78
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.76
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.66
PRK10941	269	hypothetical protein; Provisional	96.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.55
KOG1585	308	consensus Protein required for fusion of vesicles	96.54
COG2912	269	Uncharacterized conserved protein [Function unknow	96.54
PRK04841	903	transcriptional regulator MalT; Provisional	96.53
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.52
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.49
PRK04841	903	transcriptional regulator MalT; Provisional	96.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.36
PLN03077	857	Protein ECB2; Provisional	96.36
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.31
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.3
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.28
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.27
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.25
KOG1586	288	consensus Protein required for fusion of vesicles	96.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.23
PLN03077	857	Protein ECB2; Provisional	96.19
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.11
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.04
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.03
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.98
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.94
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.82
KOG2471	696	consensus TPR repeat-containing protein [General f	95.8
KOG1586	288	consensus Protein required for fusion of vesicles	95.78
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.75
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.74
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.67
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.65
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.63
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.57
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.38
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.35
KOG3364	149	consensus Membrane protein involved in organellar	95.32
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.32
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	95.24
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.11
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.03
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.0
KOG3364	149	consensus Membrane protein involved in organellar	94.93
KOG2471	696	consensus TPR repeat-containing protein [General f	94.93
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.89
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.86
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.81
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.75
COG2912	269	Uncharacterized conserved protein [Function unknow	94.73
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.4
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	94.35
KOG1585	308	consensus Protein required for fusion of vesicles	93.88
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.64
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.6
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.53
COG3947	361	Response regulator containing CheY-like receiver a	93.46
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.41
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.23
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.2
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.06
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.82
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.8
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.74
PRK14284	391	chaperone protein DnaJ; Provisional	92.55
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.37
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.28
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.26
PRK14295	389	chaperone protein DnaJ; Provisional	92.24
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	92.1
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.01
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.83
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.78
PHA02537	230	M terminase endonuclease subunit; Provisional	91.34
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.17
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.94
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.83
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.79
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	90.69
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	90.68
KOG1310	758	consensus WD40 repeat protein [General function pr	90.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.35
KOG2047	835	consensus mRNA splicing factor [RNA processing and	90.27
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.21
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	90.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.97
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.89
KOG2300	629	consensus Uncharacterized conserved protein [Funct	89.76
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.57
PRK14286	372	chaperone protein DnaJ; Provisional	89.55
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.11
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.03
PRK14281	397	chaperone protein DnaJ; Provisional	88.96
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.87
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.79
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	88.4
COG5191	435	Uncharacterized conserved protein, contains HAT (H	88.23
PRK14285	365	chaperone protein DnaJ; Provisional	88.04
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	87.82
KOG0529	421	consensus Protein geranylgeranyltransferase type I	87.68
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.64
PRK14277	386	chaperone protein DnaJ; Provisional	87.47
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	87.43
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.15
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.06
PRK14298	377	chaperone protein DnaJ; Provisional	86.7
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.5
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	86.44
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	86.32
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.25
smart00727	41	STI1 Heat shock chaperonin-binding motif.	86.14
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.05
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.99
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.93
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.12
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	84.85
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.61
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	84.49
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	84.27
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	84.03
KOG3540	615	consensus Beta amyloid precursor protein [General	84.01
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	84.01
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	84.0
COG5191	435	Uncharacterized conserved protein, contains HAT (H	83.84
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	83.81
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	83.66
KOG0529	421	consensus Protein geranylgeranyltransferase type I	83.46
PRK10767	371	chaperone protein DnaJ; Provisional	82.74
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	82.71
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	82.67
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.61
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	82.58
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	82.45
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	82.42
PTZ00037	421	DnaJ_C chaperone protein; Provisional	82.12
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.01
PRK14296	372	chaperone protein DnaJ; Provisional	81.75
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	81.45
COG4907	595	Predicted membrane protein [Function unknown]	81.33
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	81.13
PRK14287	371	chaperone protein DnaJ; Provisional	81.11
PRK14278	378	chaperone protein DnaJ; Provisional	80.86
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	80.48
KOG1118	366	consensus Lysophosphatidic acid acyltransferase en	80.47
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	80.41
PRK14288	369	chaperone protein DnaJ; Provisional	80.37
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	80.35
PRK14279	392	chaperone protein DnaJ; Provisional	80.28
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	80.23

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-68  Score=499.60  Aligned_cols=372  Identities=48%  Similarity=0.729  Sum_probs=297.4

Q ss_pred             CCHHHHHHHHHHHHHHhhCCCCCCccchhhHHHHHHHcCCCCCCCCCCCCCCCCCcCccccchHHhhhhhhhchhccchh
Q 044737            1 MDAEKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVEESEEEEQRVEVEEKEEEEDE   80 (399)
Q Consensus         1 ~~~~~~~~l~~~~~~~~~~p~~l~~~~~~f~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~~   80 (399)
                      |+..+|..|+.||.+|+++|++||.+++.|+|+|++|+|+++|++..+...+    +...+.+.+++..++ ++.+++.+
T Consensus         1 ~~~~~ll~l~~F~~~~k~~~~~l~~~~~~flr~~~~s~g~~vpp~~~k~~~~----e~~k~e~~~~~~~ee-~~~~~e~s   75 (377)
T KOG1308|consen    1 MSSPKLLILCAFVKMCKQDPSFLHTTEMIFLREWVESAGAKVPPAGQKAKSE----ENTKAEASISKSVEE-SLKAPEVS   75 (377)
T ss_pred             CCchhHHHhhhHHHHhccCchhhcccchhHHHHHHHhccCcCCCCCCcCccc----ccccccCCccccccc-ccccCCCC
Confidence            5778999999999999999999999999999999999999999984432211    111111222222222 45667778


Q ss_pred             hhhhhhccccc-ccCCCCCCCCCCCCCCcccCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHH
Q 044737           81 IVESDIELEGD-IVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRA  158 (399)
Q Consensus        81 ~~esd~e~~~~-~~e~~~~~~~~~~d~~~~~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra  158 (399)
                      +.+++++++.+ ||+++++++|+|||+.+++|++++++|...+..+..++..|.+++||++|+.||.++| ++.+|.+|+
T Consensus        76 ~~~~~~~~d~egviepd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~  155 (377)
T KOG1308|consen   76 SPESDLEIDGEGVIEPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRA  155 (377)
T ss_pred             CCCcchhccCCCccccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhccccc
Confidence            89999999999 9999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHH
Q 044737          159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHR  238 (399)
Q Consensus       159 ~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~  238 (399)
                      .++++++++..||+||+.||++||+.++.|.+|+.+++.+|+|++|.++|+.+++++++..+..+|++|.++++++.+++
T Consensus       156 sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~  235 (377)
T KOG1308|consen  156 SVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHR  235 (377)
T ss_pred             ceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q 044737          239 RKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGM-  317 (399)
Q Consensus       239 ~~ye~l~~~~e~kk~~~er~~~~~~A~~~~~~~~k~~~~d~g~~~~~~p~g~~g~~gg~~gg~~gg~~gg~~gg~~gg~-  317 (399)
                      ++|++.+++++++.    ++++...++...+.+...........+.++             .+.|+|+|+|+|+|++.+ 
T Consensus       236 ~k~er~~~e~~~~~----r~er~r~~r~~~e~~~~e~~k~~~~~~~~~-------------~~~g~~p~~M~g~~~~~~~  298 (377)
T KOG1308|consen  236 RKYERAREEREIKE----RVERVRYAREPEEMANPEEFKRMLKNPQYR-------------QFLGGFPGGMPGSFPGDKR  298 (377)
T ss_pred             hHHHHHHHHhcccc----cccccccccchhhhcChhhhhhhhccCCCC-------------cccCCCcccCCCCCCCccc
Confidence            99999988876643    333333333333222211111111111111             122333444444444332 


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCcchhccCCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHHhcC
Q 044737          318 -PGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFG  396 (399)
Q Consensus       318 -~g~~~g~~~gg~~~~~~~~~p~~~~~~~~~~dpe~~~~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~~~~  396 (399)
                       +++++|+   +++++ .+++|+...+++|++||+|+.+||||+|+.+++++++||+||++|++||+||++|+||+++|+
T Consensus       299 m~~~m~~~---~~n~~-~~~~p~~~gi~ki~~dpev~aAfqdp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~~kf~  374 (377)
T KOG1308|consen  299 MTDGMKGF---DGNSP-VKQQPNQIGISKILSDPEVAAAFQDPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLSQKFP  374 (377)
T ss_pred             cccccccC---CCCCc-cccCCCcccHhhhcCchHHHHhhcChHHHhhhhhcccChHHHHHhccChHHHHHHHHHHhhcC
Confidence             2222221   11111 233454445899999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 044737          397 GP  398 (399)
Q Consensus       397 ~~  398 (399)
                      |+
T Consensus       375 g~  376 (377)
T KOG1308|consen  375 GM  376 (377)
T ss_pred             CC
Confidence            86

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=8.6e-25  Score=217.20  Aligned_cols=175  Identities=27%  Similarity=0.462  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+.+.+..|+.+|+.|+|..||.+|++||..+| ++.+|+|||.||++++.+..|+.||+++|+++|++.++|+|.|.|+
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al  436 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL  436 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            366778999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKE  274 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l~~~~e~kk~~~er~~~~~~A~~~~~~~~k~  274 (399)
                      ..+.+|+.|+..|++++++||++. +...++++....                                           
T Consensus       437 ~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~-------------------------------------------  473 (539)
T KOG0548|consen  437 RAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ-------------------------------------------  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-------------------------------------------
Confidence            999999999999999999999873 222222211100                                           


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhccCCCHHHHh
Q 044737          275 EQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMA  354 (399)
Q Consensus       275 ~~~d~g~~~~~~p~g~~g~~gg~~gg~~gg~~gg~~gg~~gg~~g~~~g~~~gg~~~~~~~~~p~~~~~~~~~~dpe~~~  354 (399)
                          ++.                                                      -.|. ......|.||||++
T Consensus       474 ----~~~------------------------------------------------------~~~e-e~~~r~~~dpev~~  494 (539)
T KOG0548|consen  474 ----RGD------------------------------------------------------ETPE-ETKRRAMADPEVQA  494 (539)
T ss_pred             ----hcC------------------------------------------------------CCHH-HHHHhhccCHHHHH
Confidence                000                                                      0111 12356889999999


Q ss_pred             hcCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHHh
Q 044737          355 AFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAK  394 (399)
Q Consensus       355 ~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~~  394 (399)
                      +|+||.++.++.++.+|| +++++|.||.|++.|++|++.
T Consensus       495 il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~~l~~~  533 (539)
T KOG0548|consen  495 ILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIEKLISA  533 (539)
T ss_pred             HHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHHHHHHh
Confidence            999999999999999999 788999999999999999764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.1e-24  Score=206.42  Aligned_cols=172  Identities=26%  Similarity=0.351  Sum_probs=155.4

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG  187 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a  187 (399)
                      -..+..+.++.+||.+|+.|+|..|-++|++||.++|     ++.+|.|||.++.++|+..+||.+|+.|++||+.+.++
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            3456788999999999999999999999999999999     68999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH-----HHHHHHHHH------
Q 044737          188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRRE-----REERKVERE------  256 (399)
Q Consensus       188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~l~~~-----~e~kk~~~e------  256 (399)
                      |.++|.||..+++|++|+++|++|+++.-+-.+.+.|++++..+++ ..++++|++++.-     .++++++++      
T Consensus       324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk-SkRkd~ykilGi~~~as~~eikkayrk~AL~~H  402 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK-SKRKDWYKILGISRNASDDEIKKAYRKLALVHH  402 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH-hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhC
Confidence            9999999999999999999999999999887777888888877776 5677899999873     446666655      


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044737          257 -------------RLRRRAEAQAAYEKAKKEEQSSSSERPGG  285 (399)
Q Consensus       257 -------------r~~~~~~A~~~~~~~~k~~~~d~g~~~~~  285 (399)
                                   +|+.+-+|..+++++.++.++|+|.+...
T Consensus       403 pd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~  444 (486)
T KOG0550|consen  403 PDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEE  444 (486)
T ss_pred             CCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhh
Confidence                         78889999999999999999999988543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.91  E-value=8.9e-24  Score=197.92  Aligned_cols=107  Identities=34%  Similarity=0.529  Sum_probs=105.5

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      +....|+.+|..||.+++.++|.+||..|++||.++| ++++|+|||.+|.+||.|+.|++||..||.+||.+.++|.|+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            6788999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |.||+.+|+|++|+..|++||.|+|+|+
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            9999999999999999999999999996

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.1e-22  Score=199.08  Aligned_cols=177  Identities=31%  Similarity=0.420  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +.+++.+||.+|..|+|+.||.+|++||.++| ++.+|+||..||.++++|.+|+.|..++++++|+|+++|+|+|.++.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            46789999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHHH-HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEEI-AAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEE  275 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~~~~~k~~e~~~~ye~l~~~~e~kk~~~er~~~~~~A~~~~~~~~k~~  275 (399)
                      .+|+|++|+..|.++|+++|+|.. ..-|..+.         .                              .+..   
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~---------~------------------------------~~~~---  119 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY---------L------------------------------EDYA---  119 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh---------h------------------------------HHHH---
Confidence            999999999999999999999952 11111110         0                              0000   


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhccCCCHHHHhh
Q 044737          276 QSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNVDFSKILNDPELMAA  355 (399)
Q Consensus       276 ~~d~g~~~~~~p~g~~g~~gg~~gg~~gg~~gg~~gg~~gg~~g~~~g~~~gg~~~~~~~~~p~~~~~~~~~~dpe~~~~  355 (399)
                         .+.     .             +                                  .+|  -.++++-+||.+..+
T Consensus       120 ---~~~-----~-------------~----------------------------------~~p--~~~~~l~~~p~t~~~  142 (539)
T KOG0548|consen  120 ---ADQ-----L-------------F----------------------------------TKP--YFHEKLANLPLTNYS  142 (539)
T ss_pred             ---hhh-----h-------------c----------------------------------cCc--HHHHHhhcChhhhhh
Confidence               000     0             0                                  023  156889999999999


Q ss_pred             cCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHH
Q 044737          356 FSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMA  393 (399)
Q Consensus       356 ~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~  393 (399)
                      ++||.++.+++.+.+||.++.-|++||++|..+..|++
T Consensus       143 ~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~  180 (539)
T KOG0548|consen  143 LSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG  180 (539)
T ss_pred             hccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999975

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.86  E-value=9.8e-21  Score=179.41  Aligned_cols=173  Identities=20%  Similarity=0.242  Sum_probs=146.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA----IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY  188 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a----~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~  188 (399)
                      .+.++.....-+......++|.+++..+++.++.+| .+    ..+..++.||..-+++.+||+.|.++|.++|+++.+|
T Consensus       265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l  344 (504)
T KOG0624|consen  265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL  344 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence            345566667778888999999999999999999999 33    4445578899999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHH-HHHHHHHhHHHHhHHHHHHHHHHHHHH--------------------
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI-AAVLKKVEPNALRIEEHRRKYDRLRRE--------------------  247 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~~~~~k~~e~~~~ye~l~~~--------------------  247 (399)
                      +-|+.||..-..|+.|+++|++|++++++|.. .+-+.+ ..++++...+++||++|++.                    
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~-Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWH  423 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER-AKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWH  423 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999954 444444 35667778889999999873                    


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 044737          248 ------REERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMP  287 (399)
Q Consensus       248 ------~e~kk~~~er~~~~~~A~~~~~~~~k~~~~d~g~~~~~~p  287 (399)
                            .++|+.+++++.+++.|+++++++++|+++|+|.+|=.+.
T Consensus       424 PDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~E  469 (504)
T KOG0624|consen  424 PDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDPE  469 (504)
T ss_pred             CccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCChh
Confidence                  3445555557889999999999999999999999975543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=4.4e-18  Score=151.00  Aligned_cols=107  Identities=30%  Similarity=0.403  Sum_probs=101.8

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK  186 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~  186 (399)
                      ..+..+..++..||.+|+.|+|.+|...|++||.++|      .+++|.|||.|++++++|+.||.+|.+||+|+|.+.+
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k  169 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK  169 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence            3356788999999999999999999999999999999      3799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |+.|||.+|..+.+|++|+.+|++.++++|...
T Consensus       170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            999999999999999999999999999999863

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5.8e-17  Score=157.82  Aligned_cols=124  Identities=26%  Similarity=0.327  Sum_probs=110.0

Q ss_pred             cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 044737          110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----------------SAIMYATRASVYIKMKKPNAAIRD  173 (399)
Q Consensus       110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----------------~a~~~~nra~a~~~l~~~~~Ai~d  173 (399)
                      .+++.+..|...+.+||.+|+.++|..|+..|.+|+..-.                ...+|.|+|.||+++++|.+|+..
T Consensus       200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~  279 (397)
T KOG0543|consen  200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES  279 (397)
T ss_pred             chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence            3456899999999999999999999999999999998632                268899999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHh
Q 044737          174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALR  233 (399)
Q Consensus       174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k  233 (399)
                      |+++|+++|+|++|+||+|.||..+++|+.|+.+|++|++++|+| ++...|..+..++++
T Consensus       280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999 455555555444333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.69  E-value=6.3e-17  Score=153.69  Aligned_cols=109  Identities=27%  Similarity=0.335  Sum_probs=104.4

Q ss_pred             cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737          110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY  188 (399)
Q Consensus       110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~  188 (399)
                      +.++.++.+.+++++||.||++|+|++||.||+++|.++| ++.+|.|||.+|+++++|..|..||+.||.||-.+++||
T Consensus        89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY  168 (536)
T KOG4648|consen   89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY  168 (536)
T ss_pred             HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence            3455577788899999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .||+.|...||...+|.++|+.+|+|.|.+
T Consensus       169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  169 SRRMQARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence            999999999999999999999999999986

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=6e-16  Score=152.72  Aligned_cols=109  Identities=37%  Similarity=0.538  Sum_probs=101.3

Q ss_pred             cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737          110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY  188 (399)
Q Consensus       110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~  188 (399)
                      ..++..+.|..++.+||.+|+.++|++||.+|++||.++| .++.|.||+.||..+|+|+..+++|++||+++|+++++|
T Consensus       107 ~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl  186 (606)
T KOG0547|consen  107 LKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL  186 (606)
T ss_pred             ChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence            4567788899999999999999999999999999999999 799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhC-CcH
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKID-FDE  218 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ld-p~~  218 (399)
                      +||+.||-.+|++.+|+.|+...+-++ .+|
T Consensus       187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n  217 (606)
T KOG0547|consen  187 LRRASAHEQLGKFDEALFDVTVLCILEGFQN  217 (606)
T ss_pred             HHHHHHHHhhccHHHHHHhhhHHHHhhhccc
Confidence            999999999999999999988765543 444

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2.2e-15  Score=142.77  Aligned_cols=104  Identities=27%  Similarity=0.378  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML---NP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l---~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      +.|+.++..||.||+.++|..|+..|+++|..   +|  ++.+|.|||+|.+-+++|..||.||.+|+.++|++.++|+|
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            47899999999999999999999999999987   45  89999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      -+.|++.|.++.+|+..++..+.++-+..
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            99999999999999999999998887663

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.64  E-value=3.2e-16  Score=149.16  Aligned_cols=66  Identities=24%  Similarity=0.112  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP  182 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p  182 (399)
                      .+.-+..++.++++.+++..||+.|..||.++| ++.-|-.|+.++..+++|.+|.+++..|++++-
T Consensus       147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  147 LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence            355566899999999999999999999999999 999999999999999999999999999999874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.62  E-value=1e-14  Score=145.15  Aligned_cols=111  Identities=30%  Similarity=0.454  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..++..|+.+|..++|.+|+.+|++||+++| ++.+|++||.||+++++|.+|+.+|++||.++|+++.+|+++|.+|..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEP  229 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~  229 (399)
                      +|+|++|+.+|+++++++|++. +..++..+..
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999984 4445544433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=2.8e-14  Score=123.97  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      .+...|..++..|+|++|+..|.+++.++| +..+|.++|.++..+|+|++|+..|++++.++|+++.+|+++|.++..+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            466789999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcHHH-HHHHHHHh
Q 044737          199 GHWEEAVHDLHVASKIDFDEEI-AAVLKKVE  228 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~  228 (399)
                      |++++|+..|+++++++|++.. +..+..++
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            9999999999999999999843 33333333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.54  E-value=1.7e-13  Score=145.83  Aligned_cols=125  Identities=30%  Similarity=0.415  Sum_probs=107.0

Q ss_pred             CCCCCCCCCCCCCCcccCHH-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044737           94 EADNDPPQKMGDSSAEVTDE-KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIR  172 (399)
Q Consensus        94 e~~~~~~~~~~d~~~~~~ee-~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~  172 (399)
                      ++..+.++...+....++.+ ....+..++..|+.+|+.|+|++||.+|+++|.++|+..+|.|+|.||+++++|++|+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~  181 (615)
T TIGR00990       102 EPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVE  181 (615)
T ss_pred             CccccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHH
Confidence            33333334333334455544 44568899999999999999999999999999999966789999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       173 d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +|++||+++|+++++|+++|.+|..+|+|++|+.+|..++.+++.+
T Consensus       182 ~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~  227 (615)
T TIGR00990       182 DTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR  227 (615)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999999999999999999999888887643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.48  E-value=1.5e-12  Score=126.50  Aligned_cols=104  Identities=24%  Similarity=0.181  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..+..+|..+...|++.+|+..|+++|.++| ++.+|.++|.+|..+++|+.|+..|+++|+++|++..+|+++|.+
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  141 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA  141 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3466799999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +...|++++|+.+|+++++++|++.
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999985

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=2.9e-12  Score=126.94  Aligned_cols=135  Identities=21%  Similarity=0.276  Sum_probs=114.4

Q ss_pred             cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737          110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY  188 (399)
Q Consensus       110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~  188 (399)
                      +.++-...|+.+..+|..+|-.|++-.|-..|.++|.++| ...+|..||.+|+...+..+-+.++++|..+||.++..|
T Consensus       318 ~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY  397 (606)
T KOG0547|consen  318 IDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY  397 (606)
T ss_pred             cchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh
Confidence            3444455688999999999999999999999999999999 888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH-hHHHHhHHHHHHHHHHH
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV-EPNALRIEEHRRKYDRL  244 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v-~~~~~k~~e~~~~ye~l  244 (399)
                      +.||+.++.+++|++|+.+|++|++|+|++......+-+ .-+..++.+....++..
T Consensus       398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~  454 (606)
T KOG0547|consen  398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA  454 (606)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999654332222 33344555555444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.47  E-value=1.2e-12  Score=111.38  Aligned_cols=103  Identities=22%  Similarity=0.252  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+......|..++..++|++|+..|++++.++| +..+|.++|.+|+.+++|.+|+..+++++.++|+++..|+.+|.+|
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            456678899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ..+|+++.|+..|+++++++|++.
T Consensus        96 ~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        96 LALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999985

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.5e-12  Score=117.71  Aligned_cols=112  Identities=21%  Similarity=0.207  Sum_probs=101.8

Q ss_pred             CcccCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CC-CHHHHHHHHHHHHHcCCH
Q 044737          107 SAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML------------------NP-SAIMYATRASVYIKMKKP  167 (399)
Q Consensus       107 ~~~~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l------------------~P-~a~~~~nra~a~~~l~~~  167 (399)
                      ..-..++.++....+..+||.+|+.|+|.+|+..|..||-.                  +. ...++.|.+.|++..++|
T Consensus       167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~  246 (329)
T KOG0545|consen  167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY  246 (329)
T ss_pred             ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence            33345666778899999999999999999999999999853                  22 468999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          168 NAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       168 ~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      -++++.|..+|..+|++.+|||+||.|+...-+..+|..+|.++|+++|.-
T Consensus       247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            999999999999999999999999999999999999999999999999974

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=5.6e-13  Score=121.55  Aligned_cols=115  Identities=25%  Similarity=0.356  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      +-..+..++..|+.+|...+|..||.+|.+||.++| .+.+|.|||.||+++.+|+.+..+|.+|++++|+.+++++.+|
T Consensus         6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg   85 (284)
T KOG4642|consen    6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG   85 (284)
T ss_pred             cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence            345678999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhh------CCcHHHHHHHHHHh
Q 044737          193 MAHAMLGHWEEAVHDLHVASKI------DFDEEIAAVLKKVE  228 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~l------dp~~~~~~~lk~v~  228 (399)
                      .++.....|++|+..+.+|..+      .+.+++...|..++
T Consensus        86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   86 QWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999999999999655      34457777777764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.42  E-value=7.2e-12  Score=108.92  Aligned_cols=102  Identities=14%  Similarity=-0.001  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      ..+.++..|..++..|+|++|+..|.-...++| ++..|+++|.|+..+|+|.+||..|.+|+.++|+++.++++.|.|+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            445788999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +.+|+.+.|.+.|+.|+.+.-++
T Consensus       114 L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999887433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.40  E-value=2.7e-13  Score=134.72  Aligned_cols=113  Identities=32%  Similarity=0.481  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .|..++.+++.+|..+.|+.||.+|++||+++| .+.+|.+|+.+|++.++|..|+.|+.+||+++|.+.++|+|+|.++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            467889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEP  229 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~  229 (399)
                      ..++++.+|+.+|++...+.|++. +...+.++..
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            999999999999999999999984 4445555443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.34  E-value=1.4e-11  Score=117.65  Aligned_cols=104  Identities=24%  Similarity=0.322  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..++.....|+.++..++|..|+.+|..||+.+| +..+++.||.+|+.+|+-..|+.|++++|++.|++.-|...||.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            4567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +.+.|.++.|..+|.+.|..+|++.
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999763

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.34  E-value=3.4e-11  Score=128.31  Aligned_cols=129  Identities=22%  Similarity=0.256  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..+..+|..++..|++++|+..|.++|.++| ....|.++|.+|..+++|++|+.+|+++|+++|+++.+|+.+|.+
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  408 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL  408 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455677888888888888888888888888888 888888888888888888888888888888888888888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      +..+|+|++|+.+|+++++++|++ ..+..+..+...++++.+....|+..
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  459 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC  459 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            888888888888888888888876 33444455554555555555554443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.34  E-value=3.5e-11  Score=110.12  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVY-IKMKK--PNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~-~~l~~--~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      +.+..|...|..+...|+|++|+..|.+|++++| +..++.++|.++ ...++  +.+|+..++++++++|+++.+++.+
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L  150 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL  150 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence            3456899999999999999999999999999999 999999999985 67787  5999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |.++..+|+|++|+..|+++++++|.+.
T Consensus       151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        151 ASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999998763

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.33  E-value=5e-12  Score=128.16  Aligned_cols=129  Identities=21%  Similarity=0.177  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +.++.+.||+|-..+.|+.|+.+|.+|+.+.| .+.+|.|+|.+|+..|..+-||+.|.+||++.|.++.||+++|.|+.
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK  331 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence            45788899999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..|+..+|+.+|.+||.+.|+. +....|..+.....+++++.+.|+..-.
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~  382 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE  382 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            9999999999999999999987 4566777778888888888877765443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.29  E-value=2.4e-11  Score=123.30  Aligned_cols=100  Identities=28%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+.+.|..|-++|++++||.+|.+||++.| .+.+|+|+|..|-.+|+..+|+.+|++||.++|.++.|+.++|.+|..
T Consensus       389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD  468 (966)
T KOG4626|consen  389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD  468 (966)
T ss_pred             hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence            3344555555566666666666666666666 666666666666666666666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHHHHhhCCcH
Q 044737          198 LGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .|+..+|+..|+.||+++||-
T Consensus       469 sGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  469 SGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             cCCcHHHHHHHHHHHccCCCC
Confidence            666666666666666666654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.25  E-value=2.7e-11  Score=91.10  Aligned_cols=66  Identities=30%  Similarity=0.464  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG-HWEEAVHDLHVASKIDF  216 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg-~~eeA~~~l~~Al~ldp  216 (399)
                      +..|.++|.+++..++|.+|+..|+++|+++|+++.+|+++|.+|..++ ++++|+.+|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455566666666666666666666666666666666666666666665 46666666666666555

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1e-10  Score=110.45  Aligned_cols=96  Identities=26%  Similarity=0.253  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEP  229 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~  229 (399)
                      +.-+.+-|.-+++.++|.+|+..|++||+++|.++..|++|+.||..||.|+.|+++|+.|+.+||.. ..+..|..+..
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            44456678888999999999999999999999999999999999999999999999999999999998 67888999888


Q ss_pred             HHHhHHHHHHHHHHHHH
Q 044737          230 NALRIEEHRRKYDRLRR  246 (399)
Q Consensus       230 ~~~k~~e~~~~ye~l~~  246 (399)
                      .+.++.++..+|++.-.
T Consensus       161 ~~gk~~~A~~aykKaLe  177 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALE  177 (304)
T ss_pred             ccCcHHHHHHHHHhhhc
Confidence            89998888888876554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=3e-11  Score=123.74  Aligned_cols=139  Identities=17%  Similarity=0.168  Sum_probs=123.1

Q ss_pred             cccCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737          108 AEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK  186 (399)
Q Consensus       108 ~~~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~  186 (399)
                      +++++.+....+.|...||.|--+++++.||++|.+||.++| .+-+|..+|.=+.....|+.|...|++||.++|++-.
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence            455566666778999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      |||-+|.+|.++++++.|...|++|+.++|.+ .+...+..++.++++..++...|++.-.
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            99999999999999999999999999999998 4566777777888887777777766554

>PRK12370 invasion protein regulator; Provisional

Probab=99.24  E-value=1.4e-09  Score=114.67  Aligned_cols=123  Identities=12%  Similarity=-0.005  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      +...|..+...|++++|+.+|.+|++++| ++.+|+++|.+|..+|++++|+..++++++++|.++.+++.++.+++.+|
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g  420 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT  420 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence            34455555555556566666666666655 55555555555555556655666666666665555555555555555555


Q ss_pred             CHHHHHHHHHHHHhhC-CcHH-HHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          200 HWEEAVHDLHVASKID-FDEE-IAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       200 ~~eeA~~~l~~Al~ld-p~~~-~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      ++++|+..++++++.. |++. ....+..+...+++..+++..+++
T Consensus       421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~  466 (553)
T PRK12370        421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE  466 (553)
T ss_pred             CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5555555555555543 3332 233344444444444444444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.24  E-value=3.2e-10  Score=93.37  Aligned_cols=102  Identities=20%  Similarity=0.125  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKT  190 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~  190 (399)
                      ++.+...|..++..|+|++|+..|.+++..+| +   ..+++++|.++++.++|..|+..|.+++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            35778999999999999999999999999998 4   6789999999999999999999999999999885   678999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.++..++++++|+..|.++++..|++.
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            99999999999999999999999999985

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.22  E-value=3.3e-10  Score=103.64  Aligned_cols=116  Identities=13%  Similarity=0.130  Sum_probs=105.3

Q ss_pred             cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC--HHHHHH
Q 044737          131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH-AMLGH--WEEAVH  206 (399)
Q Consensus       131 ~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~-~~lg~--~eeA~~  206 (399)
                      .++.++++..|.++++.+| +...|..+|.+|..+++++.|+..|++|++++|+++.+|+.+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            5778999999999999999 9999999999999999999999999999999999999999999985 67787  599999


Q ss_pred             HHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          207 DLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       207 ~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      .|+++++++|++ .+...+..+....+++.++..+|+++-.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999998 5566777777888888888888887655

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.22  E-value=5.1e-11  Score=89.57  Aligned_cols=66  Identities=30%  Similarity=0.386  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK-KPNAAIRDATAALEINP  182 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p  182 (399)
                      .|..|...|..++..++|++|+..|+++|+++| ++.+|+++|.||..++ +|.+|+.++++||+++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            467899999999999999999999999999999 9999999999999999 79999999999999998

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.21  E-value=3.9e-10  Score=124.92  Aligned_cols=122  Identities=22%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEA  204 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA  204 (399)
                      +..+...|++++|+.+|.+++.++|+..+|.++|.++.++|++++|+..|.+++.++|+++.+++++|.++..+|++++|
T Consensus       583 a~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        583 HAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            33344446666666666666666665556666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          205 VHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       205 ~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +..|+++++++|++ .+...+..+...++++.++...|++.-+
T Consensus       663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            66666666666665 3445555555555555555555555433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.21  E-value=2.2e-10  Score=87.77  Aligned_cols=98  Identities=34%  Similarity=0.439  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      .+...|..++..+++.+|+..|.++++..| +..++.++|.+|...+++..|+..|++++.+.|.+..+++.+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            467889999999999999999999999999 8899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCc
Q 044737          199 GHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~  217 (399)
                      ++++.|...+.++++++|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988874

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=6.6e-10  Score=109.86  Aligned_cols=124  Identities=21%  Similarity=0.222  Sum_probs=113.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW  201 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~  201 (399)
                      -.||-|.-.+++++||..|.+|+++|| ...+|...|.=|+.+++-.+|+..|++||+++|.+-+|||-+|++|..++-+
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh  414 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH  414 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence            568888888899999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          202 EEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       202 eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      .=|+-.|++|+++-|.| ..+..|.++...+.++.++.+.|++.-.
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            99999999999999988 5688999999999999999988887655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.20  E-value=3.8e-10  Score=97.95  Aligned_cols=106  Identities=11%  Similarity=0.006  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          138 IELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       138 i~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      ..+|+++|+++| +   +.++|.++...|+|++|+..|++++.++|++..+|+.+|.++..+|+|++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            367899999999 5   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          217 DE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       217 ~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ++ ..+..+..+...+++..++...|...-.
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~  120 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK  120 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            98 5566777777777777777777766543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.19  E-value=5.2e-10  Score=93.52  Aligned_cols=104  Identities=29%  Similarity=0.402  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AKGY  188 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~a~  188 (399)
                      .++....+-.+|..+...|+++.|++.|.++|.+.| ++.+|.|||.+|.-.++.++|+.|+++|+++..+.    ..+|
T Consensus        39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~  118 (175)
T KOG4555|consen   39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF  118 (175)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence            356667788899999999999999999999999999 99999999999999999999999999999997654    3589


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      ..||.+|+.+|+.+.|..+|+.|-++-..
T Consensus       119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  119 VQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            99999999999999999999999888654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.19  E-value=7.1e-10  Score=98.93  Aligned_cols=105  Identities=20%  Similarity=0.249  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      ....+..+...|..+...|+|++|+.+|.+++.+.|    ...+|.++|.+|.++|+|++|+..+.+++.++|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            345677899999999999999999999999999876    2579999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC--------------HHHHHHHHHHHHhhCCcH
Q 044737          190 TRGMAHAMLGH--------------WEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       190 ~~g~a~~~lg~--------------~eeA~~~l~~Al~ldp~~  218 (399)
                      .+|.+|..+++              +++|+..+++++.++|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999988              677888888888888887

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.16  E-value=1e-10  Score=118.34  Aligned_cols=114  Identities=19%  Similarity=0.252  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      .....|..|+-.++|++||++|+.||..+| +..+|..+|..+..-.+..+||..|++||+|.|.++.++|++|.++..+
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL  511 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence            345689999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCc-----------HHHHHHHHHHhHHHHh
Q 044737          199 GHWEEAVHDLHVASKIDFD-----------EEIAAVLKKVEPNALR  233 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~-----------~~~~~~lk~v~~~~~k  233 (399)
                      |.|++|+..|-.||.+.+.           +.+|..|+.+.....+
T Consensus       512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence            9999999999999999765           3467777765544433

>PRK12370 invasion protein regulator; Provisional

Probab=99.16  E-value=8.3e-10  Score=116.28  Aligned_cols=88  Identities=18%  Similarity=0.058  Sum_probs=85.4

Q ss_pred             CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737          132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      +++.+|+..+.+|++++| ++.+|..+|.++...+++++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..|++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            458999999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCcHH
Q 044737          211 ASKIDFDEE  219 (399)
Q Consensus       211 Al~ldp~~~  219 (399)
                      +++++|.+.
T Consensus       398 Al~l~P~~~  406 (553)
T PRK12370        398 CLKLDPTRA  406 (553)
T ss_pred             HHhcCCCCh
Confidence            999999974

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.14  E-value=3e-09  Score=96.45  Aligned_cols=126  Identities=18%  Similarity=0.185  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+...|..++..++|++|+..|.+++..+| +..++..+|.+|..++++++|+..+.++++++|.+..+++++|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            356778889999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCc--H-HHHHHHHHHhHHHHhHHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFD--E-EIAAVLKKVEPNALRIEEHRRKYD  242 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~--~-~~~~~lk~v~~~~~k~~e~~~~ye  242 (399)
                      ...|++++|+..|++++.....  . .....+..+....++..+....+.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT  159 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999886422  1 223334444444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.1e-09  Score=108.36  Aligned_cols=128  Identities=20%  Similarity=0.181  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..|-..|-.|...++-..||..|++||.++| +..+|+.+|++|--++.+--|+-.+++|+.+.|.+...|..+|.||..
T Consensus       365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k  444 (559)
T KOG1155|consen  365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK  444 (559)
T ss_pred             HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            3455778889999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +++.++|+++|.+|+...-.+ .+...|.++.++++...++..+|++.-+
T Consensus       445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999998776 5567788888999998888888877655

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.14  E-value=2.2e-09  Score=113.29  Aligned_cols=102  Identities=22%  Similarity=0.215  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+...||.+|..|++++|...+.++|+.+| +..+|+.+|.+|-++|+.+.|+...-.|-.++|.+..-|.+++...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            377889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ..+|.|..|.-+|.+|++++|.+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999998

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.14  E-value=1.3e-08  Score=92.36  Aligned_cols=127  Identities=20%  Similarity=0.202  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN--PDSAKGYKTRGMA  194 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--p~~~~a~~~~g~a  194 (399)
                      +..+...|..++..|++++|+..|.+++.++| +..++.+++.+|...+++++|+..+.+++...  +.....++.+|.+
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  144 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC  144 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            35677889999999999999999999999999 99999999999999999999999999999864  5567789999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      +..+|++++|...|.++++++|++ .....+..+....++..+....+++.
T Consensus       145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  195 (234)
T TIGR02521       145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY  195 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999987 44555666655566666555555543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.13  E-value=4.2e-09  Score=116.85  Aligned_cols=102  Identities=13%  Similarity=-0.003  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..+.+.|++++|+..|.+++.++| +..++.++|.++..+|++++|+..|++|++++|+++.+++++|.++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34567888999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|++++|+..|+++++++|++.
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999873

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.13  E-value=2.6e-09  Score=114.35  Aligned_cols=132  Identities=10%  Similarity=-0.078  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      +..+..++..|......|+|++|..++..++.++| +..++.+++.++.+++++++|+..|++++..+|+++.+++.+|.
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            44577888999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ++..+|+|++|+..|++++..+|++ .++-.+..+.....+..++...|++.-.
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999886 4455566666667777777777766543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.12  E-value=2.5e-09  Score=94.91  Aligned_cols=104  Identities=20%  Similarity=0.126  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      ...+..+...|..++..++|++|+..|.+|+.+.|    .+.+|.++|.+|..++++++|+..|.+|+.++|.+..++..
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            45688899999999999999999999999999866    35689999999999999999999999999999999999999


Q ss_pred             HHHHHH-------hcCCHH-------HHHHHHHHHHhhCCcH
Q 044737          191 RGMAHA-------MLGHWE-------EAVHDLHVASKIDFDE  218 (399)
Q Consensus       191 ~g~a~~-------~lg~~e-------eA~~~l~~Al~ldp~~  218 (399)
                      +|.++.       .+|+++       +|+..|++++.++|++
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999998       777877       5555666677788865

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.10  E-value=3.3e-09  Score=96.84  Aligned_cols=133  Identities=19%  Similarity=0.180  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      ....+.....+|..|+..|++..|...+++||+++| +..+|.-||.+|.++|+.+.|.+.|++|++++|++...+.+.|
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG  110 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG  110 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence            345567888999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCC--c-HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDF--D-EEIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp--~-~~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..++.+|+|++|...|++|+..-.  . ...++.+..+.-+.++...++.+|++.-+
T Consensus       111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063         111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence            999999999999999999987431  1 13455566665555665666666555433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.08  E-value=9.7e-09  Score=95.70  Aligned_cols=102  Identities=24%  Similarity=0.217  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKMKKPNAAIRDATAALEINPDSAK---GYKT  190 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~---a~~~  190 (399)
                      +..+...|..++..|+|++|+..|.+++..+| +.   .+++.+|.+|+++++|++|+..|+++++.+|+++.   +|+.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            45789999999999999999999999999999 53   68899999999999999999999999999998876   7999


Q ss_pred             HHHHHHhc--------CCHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAML--------GHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~l--------g~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.++...        +++++|+..|+++++.+|++.
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            99999876        889999999999999999984

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.07  E-value=5.9e-09  Score=111.91  Aligned_cols=127  Identities=15%  Similarity=0.098  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDE----AIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~----Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ..+...|..++..|++++    |+..|++++.++| ++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~  326 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR  326 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344556777777777774    6777777777777 77777777777777777777777777777777777777777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHHHHH-HHHHHhHHHHhHHHHHHHHHHHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEEIAA-VLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~~~~-~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      +|..+|++++|+..|++++..+|++.... .+..+....++..++...|+.+-
T Consensus       327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            77777777777777777777777763322 22334445555555555555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.06  E-value=3.9e-09  Score=89.54  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=93.2

Q ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          139 ELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       139 ~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      ++|.+++.++| +..++..+|.+++..+++.+|+..+++++.++|+++.+|+++|.++..++++++|+..|+++++++|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            47889999999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          218 E-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       218 ~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      + .....+..+....++...+...++..-
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAI  112 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8 445566666666666666655554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.06  E-value=6.1e-10  Score=87.31  Aligned_cols=80  Identities=24%  Similarity=0.330  Sum_probs=72.9

Q ss_pred             cCCHHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044737          131 EGKLDEAIELSTEAIMLNP-S--AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHD  207 (399)
Q Consensus       131 ~g~~~~Ai~~y~~Ai~l~P-~--a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~  207 (399)
                      .++|+.|+..|.+++...| +  ..++.++|.||+++++|.+|+..+++ +.+++.+...++.+|.|+..+|+|++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6899999999999999999 5  66788899999999999999999999 999999999999999999999999999999


Q ss_pred             HHHH
Q 044737          208 LHVA  211 (399)
Q Consensus       208 l~~A  211 (399)
                      |++|
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.06  E-value=3.8e-09  Score=113.36  Aligned_cols=122  Identities=17%  Similarity=0.128  Sum_probs=107.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNA----AIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~----Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+..++..|++++|+..|.+++.++| +..++.++|.+|..+|++.+    |+..|++++.++|+++.++..+|.++..
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  296 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR  296 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            457788999999999999999999999 99999999999999999986    8999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      +|++++|+..|++++.++|++ .+...+..+....++..++...|+++
T Consensus       297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999998 44556666666666666666555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.8e-09  Score=105.57  Aligned_cols=132  Identities=23%  Similarity=0.235  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------------AIMYATRASVYIKMKKPNAAIRDATAALEIN  181 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~  181 (399)
                      ...+.+++.+|..++...+.+.|+.+|+++|+++| .            ...+.++|.-.++.|+|..|...|+.||.++
T Consensus       200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id  279 (486)
T KOG0550|consen  200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID  279 (486)
T ss_pred             cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence            34578899999999999999999999999999999 2            3567788999999999999999999999999


Q ss_pred             CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          182 PDS----AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       182 p~~----~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      |++    ++.|++|+.++..+|+..+|+.++..|++||+.. ........+.-.+.+++++.++|+...+
T Consensus       280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            986    5789999999999999999999999999999986 3333444456678888888888876554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=3.5e-09  Score=102.85  Aligned_cols=113  Identities=16%  Similarity=0.120  Sum_probs=95.6

Q ss_pred             CHHHHHHHHHHHHH---hCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044737          133 KLDEAIELSTEAIM---LNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHD  207 (399)
Q Consensus       133 ~~~~Ai~~y~~Ai~---l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~  207 (399)
                      ..+.+|..++++|.   ++|  .+.+|+++|.+|..+|++..|+.+|+++++++|+++.+|+.+|.++..+|+|++|+..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            56778999999996   555  5889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          208 LHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       208 l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      |+++++++|++ .++..+..+....++..++...+++.-
T Consensus       121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al  159 (296)
T PRK11189        121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY  159 (296)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999998 444555555555566666655554443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=2.1e-09  Score=110.33  Aligned_cols=99  Identities=21%  Similarity=0.207  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      ++-..|-.+.....|+.|..+|..||..+| ...+|+.+|.+|+++++++.|.-.+++|+++||.+....+..|.++.++
T Consensus       457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~  536 (638)
T KOG1126|consen  457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL  536 (638)
T ss_pred             hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence            444455555555555555555555555555 5555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhhCCcH
Q 044737          199 GHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~  218 (399)
                      |+.++|+..|++|+.+||.|
T Consensus       537 k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  537 KRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             hhhhHHHHHHHHHHhcCCCC
Confidence            55555555555555555555

>PLN02789 farnesyltranstransferase

Probab=99.02  E-value=1.4e-08  Score=99.59  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=85.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH--HH
Q 044737          128 AISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK-KPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW--EE  203 (399)
Q Consensus       128 ~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~--ee  203 (399)
                      +...+++++|+..++++|.++| +..+|..|+.++..++ .+++++..++++++.+|++..+|+.|+.++..+++.  ++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            4556677888888888888888 8888888888888877 567888888888888888888888888777777763  66


Q ss_pred             HHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          204 AVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       204 A~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      ++..+.++++++|.| .++.....+...++...+...++.++
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~  168 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQL  168 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            777777888888877 55655555555555555555555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.00  E-value=1.1e-08  Score=97.65  Aligned_cols=101  Identities=15%  Similarity=0.029  Sum_probs=92.6

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 044737          119 AEAKAKAMEA-ISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKT  190 (399)
Q Consensus       119 ~~~k~~g~~~-~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~  190 (399)
                      ..++..|..+ ++.++|++|+..|...|...| +   ..+++++|.+|+..++|..|+..|.+++...|++   +.+|+.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4567777776 678999999999999999999 4   6899999999999999999999999999998875   779999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.++..+|+++.|+..|+++++..|+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            99999999999999999999999999985

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.99  E-value=1.8e-09  Score=80.14  Aligned_cols=63  Identities=22%  Similarity=0.257  Sum_probs=48.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       156 nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+|.++++.|+|++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            467777778888888888888888888888888888888888888888888888888877775

>PRK15331 chaperone protein SicA; Provisional

Probab=98.98  E-value=1.3e-08  Score=89.08  Aligned_cols=105  Identities=14%  Similarity=0.080  Sum_probs=96.5

Q ss_pred             cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737          110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY  188 (399)
Q Consensus       110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~  188 (399)
                      ++++.+   +.....|-.+|..|+|++|...|+-...++| +...|..+|.|+..+++|+.|+..|..|..++++++..+
T Consensus        32 is~~~l---e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         32 IPQDMM---DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             CCHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            445444   5678889999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ++.|.||+.+++.+.|..+|..++.. |.+
T Consensus       109 f~agqC~l~l~~~~~A~~~f~~a~~~-~~~  137 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQCFELVNER-TED  137 (165)
T ss_pred             chHHHHHHHhCCHHHHHHHHHHHHhC-cch
Confidence            99999999999999999999999983 443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.97  E-value=1.8e-08  Score=93.93  Aligned_cols=127  Identities=16%  Similarity=0.055  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKM--------KKPNAAIRDATAALEINPDSAK  186 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l--------~~~~~Ai~d~~~Al~l~p~~~~  186 (399)
                      ..+...|..++..++|++|+..|.++++.+| +.   .+++.+|.+++..        +++..|+..+++++..+|++..
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  150 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY  150 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence            4678899999999999999999999999999 44   3789999999987        7899999999999999999865


Q ss_pred             HH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH----HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          187 GY-----------------KTRGMAHAMLGHWEEAVHDLHVASKIDFDE----EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       187 a~-----------------~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~----~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      ++                 +.+|.+|...|++.+|+..|+++++..|++    .++..+..+...+++..+...+++.+.
T Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            43                 467888999999999999999999998864    344556666666666666655555443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.97  E-value=1.1e-08  Score=100.33  Aligned_cols=114  Identities=14%  Similarity=0.160  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHH
Q 044737          114 KREAAAEAKAKAMEAISEG-KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKP--NAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g-~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~--~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      +.+....|..++..+...+ ++.+|+..++++|..+| +..+|+.|+.++.+++++  .+++..++++|+++|.+..+|.
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~  146 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS  146 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence            3445678889999999998 68999999999999999 999999999999999874  7889999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          190 TRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       190 ~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                      .|+.++..+++|++|+.++.+++++||.| .++.....+
T Consensus       147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v  185 (320)
T PLN02789        147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV  185 (320)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence            99999999999999999999999999998 444444333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.96  E-value=2.5e-08  Score=99.54  Aligned_cols=124  Identities=17%  Similarity=0.085  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-AKGYKTRGMAHAM  197 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-~~a~~~~g~a~~~  197 (399)
                      .+...|..++..+++++|+..|.++++++| ...++..+|.+|.+.|++++|+..+.+++.++|.+ ..++..++.+|..
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            345566677777777777777777777777 77777777777777777777777777777777765 3456677777777


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      +|++++|+..++++++++|+......+..+....++..++...++.
T Consensus       262 ~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~  307 (389)
T PRK11788        262 LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE  307 (389)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            7777777777777777777765444444544444555555554443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.96  E-value=1.1e-08  Score=109.54  Aligned_cols=127  Identities=12%  Similarity=0.009  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      +.+......+..+++.+++++|+..+.+++..+| ++..++.+|.++.++|+|++|+..|++++..+|+++.+|..+|.+
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~  197 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS  197 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            4456777999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRRE  247 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~l~~~  247 (399)
                      +..+|+.++|...|++|+++.-+-.     ++....+.++..-...|+++..+
T Consensus       198 l~~~G~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  245 (694)
T PRK15179        198 LTRRGALWRARDVLQAGLDAIGDGA-----RKLTRRLVDLNADLAALRRLGVE  245 (694)
T ss_pred             HHHcCCHHHHHHHHHHHHHhhCcch-----HHHHHHHHHHHHHHHHHHHcCcc
Confidence            9999999999999999999886642     22233334444444555555543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.95  E-value=3.7e-09  Score=101.46  Aligned_cols=122  Identities=25%  Similarity=0.177  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +.-+...|..+.+.|++++|+.+|.+|++++| +..++..++.+++..+++.++...+.......|+++..|..+|.++.
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~  225 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL  225 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence            44566788888888888888888888888888 88888888888888888888777777777777777778888888888


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRR  239 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~  239 (399)
                      .+|++++|+..|+++++.+|+|. +...+..+....++..++..
T Consensus       226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888888888888888888774 34455555555555444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.93  E-value=2e-08  Score=93.34  Aligned_cols=114  Identities=20%  Similarity=0.167  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      -+...|..++..|+|..|+..+.++..+.| ++.+|.-+|.+|.++|+++.|...|.+++++.|..+.++.++|..|...
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~  181 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR  181 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence            344589999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHh
Q 044737          199 GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALR  233 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k  233 (399)
                      |+++.|...+..+...-+.+ .+...|..+-.....
T Consensus       182 gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~  217 (257)
T COG5010         182 GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD  217 (257)
T ss_pred             CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence            99999999999998888755 555555555443333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.93  E-value=1.2e-07  Score=94.79  Aligned_cols=127  Identities=17%  Similarity=0.076  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S-----AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~-----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      ...+...+..+.+.|+|++|+..|.+++...| +     ..+|.++|.+++..+++++|+..|+++++++|++..+++.+
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  220 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL  220 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence            34567788999999999999999999999887 3     34677899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcHH--HHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDEE--IAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~--~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      |.+|...|++++|+..|++++.++|++.  +...+..+....++..+....+++.
T Consensus       221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  275 (389)
T PRK11788        221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA  275 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999998762  2334444444445555555554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.91  E-value=4.3e-09  Score=78.08  Aligned_cols=63  Identities=24%  Similarity=0.318  Sum_probs=59.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA  185 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~  185 (399)
                      .+|..++..|+|++|+..|.++++.+| +..+|..+|.|++.+|++.+|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            578999999999999999999999999 999999999999999999999999999999999875

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.91  E-value=4.3e-08  Score=106.49  Aligned_cols=127  Identities=18%  Similarity=0.172  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..+...|..++..|+|++|+..|.+++..+| +..++..+|.+++..++|++|+..++++++.+|.++.+|+.+|.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  202 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL  202 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3456788899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYD  242 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye  242 (399)
                      +...|++++|+..|++++.++|++. ....+..+.-..++..++...++
T Consensus       203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  251 (899)
T TIGR02917       203 LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHAD  251 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999873 33334333333344444444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.89  E-value=3.7e-08  Score=90.08  Aligned_cols=131  Identities=17%  Similarity=0.135  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI--NPDSAKGYKTRG  192 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--~p~~~~a~~~~g  192 (399)
                      .....|..+|..|-+.|+.+.|-+.|.+|+.++| +..+++|.|.-++.+|+|++|...|++|+..  .+..+..|-++|
T Consensus        67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G  146 (250)
T COG3063          67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG  146 (250)
T ss_pred             ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH
Confidence            3456788899999999999999999999999999 9999999999999999999999999999984  244578999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      .|..+.|+++.|..+|+++++++|+. .....+...+-..+.+..++-++++...
T Consensus       147 ~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~  201 (250)
T COG3063         147 LCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ  201 (250)
T ss_pred             HHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence            99999999999999999999999997 3333333434444455555555555543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.1e-08  Score=103.39  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP--------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      +...|..+|..+.|.+|+.+|..++..-+        ....+.|+|.+|.++++|++||..+++||.+.|.++.+|...|
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig  496 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG  496 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence            45789999999999999999999995422        4677999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                      .+|..+|+++.|+..|.+||.++|+| -+..+|+..
T Consensus       497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            99999999999999999999999999 456666654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.88  E-value=5.1e-08  Score=111.12  Aligned_cols=123  Identities=17%  Similarity=0.120  Sum_probs=96.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA------  194 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a------  194 (399)
                      ...|..+++.|++++|+.+|.+++.++| +..++.++|.+|..+|++++|+..|+++++++|++..++..++.+      
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence            4567888899999999999999999999 888899999999999999999999999999999987776554443      


Q ss_pred             ------------------------------------HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHH
Q 044737          195 ------------------------------------HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEH  237 (399)
Q Consensus       195 ------------------------------------~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~  237 (399)
                                                          +...|++++|+..|+++++++|++ .+...+..+....++..++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                                445789999999999999999987 3444555555555555555


Q ss_pred             HHHHHHH
Q 044737          238 RRKYDRL  244 (399)
Q Consensus       238 ~~~ye~l  244 (399)
                      ...++++
T Consensus       515 ~~~l~~a  521 (1157)
T PRK11447        515 DALMRRL  521 (1157)
T ss_pred             HHHHHHH
Confidence            5555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.87  E-value=4.2e-08  Score=111.85  Aligned_cols=121  Identities=19%  Similarity=0.219  Sum_probs=75.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG--------------  187 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a--------------  187 (399)
                      .+|..++..|++++|+..|.++++++| +..++..+|.+|++++++++|+..|+++++++|++...              
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            346777777777777777777777777 77777777777777777777777777777777765321              


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      +..+|.++...|++++|+..|+++++++|++ .+...+..+....++..++...|++
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~  410 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ  410 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            1233555556666666666666666666655 2233344444444444444444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.86  E-value=5.2e-08  Score=106.51  Aligned_cols=101  Identities=14%  Similarity=0.065  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..+...+++.+|+.+|.++|.++| +..++..++.+++..+++.+|+..++++++.+|+++. |+.+|.++.
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence            34578899999999999999999999999999 9999999999999999999999999999999999999 999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ..|++++|+..|+++++++|++.
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~  150 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQ  150 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999984

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.86  E-value=5.6e-08  Score=105.61  Aligned_cols=126  Identities=16%  Similarity=0.123  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      .+...+..+...|++.+|+..+.+++..+| +..+++++|.+|..+|++.+|+..|+++++.+|+++.++..++.++..+
T Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            445667777778888888888888888888 7778888888888888888888888888888888887888888888777


Q ss_pred             CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          199 GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ++ .+|+..|++++.+.|++ .....+..+....++..++...|++.-.
T Consensus       818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  865 (899)
T TIGR02917       818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN  865 (899)
T ss_pred             Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            77 67888888888777776 3444555555555566666665555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.86  E-value=6.1e-08  Score=83.06  Aligned_cols=102  Identities=21%  Similarity=0.200  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKT  190 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~  190 (399)
                      +..+...|..+++.|+|.+|++.|+......|    ...+...++.+|++.++|.+|+..+++-|+|+|+++   -+||.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            35788999999999999999999999999988    678999999999999999999999999999999886   48999


Q ss_pred             HHHHHHhcCC---------------HHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAMLGH---------------WEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~lg~---------------~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.++..+..               ...|..+|++.++.-|++.
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            9999999887               8889999999999999874

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.82  E-value=1.3e-07  Score=82.52  Aligned_cols=102  Identities=14%  Similarity=0.011  Sum_probs=88.9

Q ss_pred             HhC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHH
Q 044737          146 MLN-P-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAA  222 (399)
Q Consensus       146 ~l~-P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~  222 (399)
                      .+. + .....+.+|..++..|++++|.+.|+.++.++|.++..|+++|.++..+|+|.+|+..|.+|+.++|++ ....
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            345 5 667788899999999999999999999999999999999999999999999999999999999999998 4566


Q ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHH
Q 044737          223 VLKKVEPNALRIEEHRRKYDRLRRE  247 (399)
Q Consensus       223 ~lk~v~~~~~k~~e~~~~ye~l~~~  247 (399)
                      .+..+.-.++++...+..++.....
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7777777888888888777655443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.81  E-value=1.2e-07  Score=89.20  Aligned_cols=102  Identities=17%  Similarity=0.095  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTR  191 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~  191 (399)
                      ..+++.|..+++.|+|..|...|..-|...|    .+.+++|+|.+++.+|+|+.|...|..+++-.|++   +.+++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            4489999999999999999999999999999    68999999999999999999999999999998877   5689999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDEEI  220 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~~  220 (399)
                      |.+...+++.++|...|+++++.-|+.+.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            99999999999999999999999999853

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.80  E-value=1.9e-08  Score=104.32  Aligned_cols=125  Identities=19%  Similarity=0.260  Sum_probs=108.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH  200 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~  200 (399)
                      +..|.-.++.++|.+|.++++.+++++| ....|+++|.|.++++++..|+.+|.+++.++|++..+|.+++.+|..+++
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~  568 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK  568 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence            3444555677999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          201 WEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       201 ~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      -.+|...+.+|++.++++ .+++..-.|......++.+...|.++-.
T Consensus       569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            999999999999999887 5666655666666666666666655543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.79  E-value=4.1e-08  Score=74.32  Aligned_cols=59  Identities=29%  Similarity=0.469  Sum_probs=29.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          160 VYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       160 a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +|++.++|..|+..+++++.++|+++.+|+.+|.++..+|+|.+|+.+|++++++.|++
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            34444445555555555555555555555555555555555555555555555555444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.79  E-value=1.1e-07  Score=103.99  Aligned_cols=102  Identities=15%  Similarity=0.013  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+..+|..+...|++++|+..|.+++...| +..++.++|.++...|++.+|+..+++++.++|++..+++.+|.++..
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~  439 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence            4556788899999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEEI  220 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~~  220 (399)
                      +++|++|...++++++..|++..
T Consensus       440 ~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        440 LQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999963

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.77  E-value=9.5e-07  Score=83.43  Aligned_cols=102  Identities=17%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKT  190 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~  190 (399)
                      +..+...|..++..|+|++|+..|.+.+...| ..   .+.+++|.+|+++++|..|+..+++.|+++|+++   .+++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            34578899999999999999999999999999 43   4458999999999999999999999999999874   58999


Q ss_pred             HHHHHHhcC---------------C---HHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAMLG---------------H---WEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~lg---------------~---~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.++..++               +   ...|+..|+..++.-|+..
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            999876554               1   2578899999999999874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.76  E-value=2.7e-08  Score=74.25  Aligned_cols=64  Identities=27%  Similarity=0.307  Sum_probs=41.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       129 ~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      ++.|+|++|+..|++++..+| +..+++.+|.||++.|++++|...+.+++..+|+++.++.-++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            456666666666666666666 6666666666666666666666666666666666655554444

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.76  E-value=4.5e-08  Score=74.13  Aligned_cols=69  Identities=25%  Similarity=0.425  Sum_probs=64.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...|++.++|++|+..++++|.++| ++.+|..+|.||+++|+|.+|+.+++++++++|++..+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678999999999999999999999 99999999999999999999999999999999999987766553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=9.8e-08  Score=96.98  Aligned_cols=132  Identities=17%  Similarity=0.150  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-------------  180 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-------------  180 (399)
                      .+.++.|...|.+.....+-..||..+.+|++++| +..++..+|.+|...+.-..|+..+.+=|..             
T Consensus       316 P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~  395 (579)
T KOG1125|consen  316 PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGEN  395 (579)
T ss_pred             hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcc
Confidence            34456666666666666666666666666666666 6666666666665555444444444333222             


Q ss_pred             ----------------------------CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhH
Q 044737          181 ----------------------------NP--DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEP  229 (399)
Q Consensus       181 ----------------------------~p--~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~  229 (399)
                                                  +|  .+++.+.-+|.+|...++|+.|+.+|+.||..+|+| .+|..|.....
T Consensus       396 ~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA  475 (579)
T KOG1125|consen  396 EDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA  475 (579)
T ss_pred             ccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence                                        22  235677778888999999999999999999999998 56888888877


Q ss_pred             HHHhHHHHHHHHHHHHH
Q 044737          230 NALRIEEHRRKYDRLRR  246 (399)
Q Consensus       230 ~~~k~~e~~~~ye~l~~  246 (399)
                      +-.+..++...|.+.-.
T Consensus       476 N~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  476 NGNRSEEAISAYNRALQ  492 (579)
T ss_pred             CCcccHHHHHHHHHHHh
Confidence            77777777777765543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.75  E-value=5.4e-07  Score=82.69  Aligned_cols=103  Identities=22%  Similarity=0.197  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYK  189 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~  189 (399)
                      .+..+...|..++..|+|.+|+..|++.+...|    ...+...+|.+|++.++|..|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            457889999999999999999999999999988    478899999999999999999999999999999875   5899


Q ss_pred             HHHHHHHhcC-----------CHHHHHHHHHHHHhhCCcHH
Q 044737          190 TRGMAHAMLG-----------HWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       190 ~~g~a~~~lg-----------~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|.++..+.           ...+|+..|+..++.-|++.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            9999976653           34589999999999999873

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=1.7e-06  Score=77.71  Aligned_cols=117  Identities=21%  Similarity=0.214  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-----KGYKTRGMAH  195 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-----~a~~~~g~a~  195 (399)
                      +...+..-|...+-++++...++          +..-|.-+++.|+|.+|..-|..||.+.|...     -.|.+||.|+
T Consensus        75 Lmae~E~i~~deek~k~~~kad~----------lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~  144 (271)
T KOG4234|consen   75 LMAEIEKIFSDEEKDKAIEKADS----------LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAAL  144 (271)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHH----------HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH
Confidence            33344444444444555554433          23457778999999999999999999998763     4799999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRRE  247 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~~  247 (399)
                      .++++|+.|+.++.+|++|+|.+ .+......+.++..++.++...|+.+...
T Consensus       145 iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  145 IKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999987 33344455667778888888888877663

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=2.8e-06  Score=84.24  Aligned_cols=126  Identities=13%  Similarity=0.012  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      +-+.+.++.|-...+..+||++|.++..+-| +..+++.+|..|-+-|+-..|.+++-...+.-|.+....-|+|.-|..
T Consensus       559 evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid  638 (840)
T KOG2003|consen  559 EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID  638 (840)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence            3344444444444555555555555554444 444444444443333333333333333333333333333444444444


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHHHHH-HHHHHhHHHHhHHHHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEEIAA-VLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~~~~-~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      ..-|+.|+.+|++|.-+.|+-..|. ++..+..+...+..+.+.|+..
T Consensus       639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            4455566666666666666654333 2333333333444444444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=8.4e-07  Score=88.90  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      ....++-.+..++..++++.|...++..|...| |+.++..++..++..++..+|++.+.+++.++|+..-.++++|.+|
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al  384 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL  384 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            455678899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRK  240 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~  240 (399)
                      ...|++.+|+..+...+.-+|++ ..|.+|.+....+++..+....
T Consensus       385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            99999999999999999999999 5688999888777766555443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.69  E-value=6.9e-08  Score=96.76  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKMKKPNAAIRDATAALEIN  181 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~  181 (399)
                      .+...+.+..+.+.|.+|+..|+|++|+.+|++||+++| +.   .+|+|+|.||.++|++++|+.++.+||++.
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            335567788999999999999999999999999999999 76   459999999999999999999999999983

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.67  E-value=1.7e-06  Score=74.90  Aligned_cols=130  Identities=19%  Similarity=0.175  Sum_probs=98.0

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---A  185 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~  185 (399)
                      .....+...+......+..+++..+...+.+.+.-+| +   ..++..+|.+++..|+|++|+..++.++...|+.   .
T Consensus         6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~   85 (145)
T PF09976_consen    6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKP   85 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHH
Confidence            3455677778888888889999999888999999888 5   6777888999999999999999999999987665   4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHH
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD  242 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye  242 (399)
                      .++++++.++...|+|++|+..+.....-........++..+....++..+++..|+
T Consensus        86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen   86 LARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            588899999999999999999987633222222344555555555555555444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.67  E-value=2.9e-07  Score=79.74  Aligned_cols=94  Identities=19%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      .......|..++..|+|++|+..|.+++...|    ...++.++|.+++..++|++|+..++. +.-.+-.+.++..+|.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD  126 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence            45677899999999999999999999999876    467888999999999999999999966 3444555678899999


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 044737          194 AHAMLGHWEEAVHDLHVAS  212 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al  212 (399)
                      +|...|++++|+..|++|+
T Consensus       127 i~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999885

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.66  E-value=1.9e-07  Score=93.03  Aligned_cols=83  Identities=19%  Similarity=0.238  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+..+|.+++..|+|++|+..|.+||.++| ++.+|+++|.+|+.+|+|.+|+.+|+++++++|++..++.+++.|..
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999 99999999999999999999999999999999999999999998877


Q ss_pred             hcCC
Q 044737          197 MLGH  200 (399)
Q Consensus       197 ~lg~  200 (399)
                      .+..
T Consensus       116 kl~~  119 (356)
T PLN03088        116 KIAE  119 (356)
T ss_pred             HHHh
Confidence            7643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.65  E-value=6.1e-07  Score=75.33  Aligned_cols=95  Identities=25%  Similarity=0.102  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPD---SAKGYKTR  191 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~---~~~a~~~~  191 (399)
                      ..+++.|..+-..|+.++||.+|.+++....    ...++..+|.+|..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            3578899999999999999999999999754    4789999999999999999999999999999888   88888889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 044737          192 GMAHAMLGHWEEAVHDLHVASK  213 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~  213 (399)
                      +.++..+|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999998877764

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.64  E-value=4.2e-07  Score=80.56  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=87.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhc
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAML  198 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~l  198 (399)
                      .+.+|-...|..+...+...++.+.   .+.+|+++|.++..+++|++|+..|.+|+.+.|+.   +.+|+++|.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~   85 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN   85 (168)
T ss_pred             ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence            4556777778888888877667777   58889999999999999999999999999997763   45899999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhH
Q 044737          199 GHWEEAVHDLHVASKIDFDEE-IAAVLKKVEP  229 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~  229 (399)
                      |++++|+..|++++.++|... ....+..+..
T Consensus        86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         86 GEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            999999999999999999873 3334444443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.63  E-value=1.4e-06  Score=95.19  Aligned_cols=127  Identities=12%  Similarity=0.036  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +...+..+...++.|+|..|+..|.++++.+| +.....-++.++..+|++.+|+..|++++.-.|.+..++..+|.++.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            44678899999999999999999999999999 64333378888888999999999999999434444555555577999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      ..|+|++|+..|+++++++|++ .+...+..+.-..++..++...++++
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l  162 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL  162 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence            9999999999999999999998 33333333333444444444444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.61  E-value=4.7e-07  Score=86.86  Aligned_cols=129  Identities=24%  Similarity=0.265  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLN--P-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~--P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ...+......+...++++++...+.++....  + +..+|..+|.++.+.|++++|+.++++||+++|++..++..++.+
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL  189 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3445556677889999999999999988766  4 889999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +...|+++++...+....+..|++ ..+..+..+...+++..++...|+++.+
T Consensus       190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence            999999999888888888887665 4566777777777777777777666554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4.1e-07  Score=86.55  Aligned_cols=105  Identities=13%  Similarity=0.086  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK---PNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~---~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      ...++.|.-.|.+|+..+++..|+..|.+|+++.| ++.++..+|.+++....   -.++...++++|.+||+++.+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            34467899999999999999999999999999999 99999999999876543   478899999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|..++..|+|.+|+..++..+++.|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999998774

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=1.6e-06  Score=87.01  Aligned_cols=102  Identities=25%  Similarity=0.222  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+.-+-..+..++..+++.+|++.+.+++.++| ...++.++|.+|++.|++.+|+..++..+..+|+++..|..++.+|
T Consensus       339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay  418 (484)
T COG4783         339 NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY  418 (484)
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHH
Confidence            344455788999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ..+|+-.+|...+..++.+.-.-
T Consensus       419 ~~~g~~~~a~~A~AE~~~~~G~~  441 (484)
T COG4783         419 AELGNRAEALLARAEGYALAGRL  441 (484)
T ss_pred             HHhCchHHHHHHHHHHHHhCCCH
Confidence            99999999999999988887654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.60  E-value=3.6e-07  Score=91.72  Aligned_cols=68  Identities=19%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          147 LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG---YKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       147 l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a---~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      .+| ++.+|+|+|.+|+++++|++|+..|++||+++|++..+   |+++|.+|..+|++++|+.+|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            678 99999999999999999999999999999999999865   999999999999999999999999998

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.59  E-value=1.1e-06  Score=66.75  Aligned_cols=67  Identities=30%  Similarity=0.422  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          153 MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|+++|.+++..+++..|+..+.+++++.|.+..+++.+|.++...+++++|+..|.+++.+.|.+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            5789999999999999999999999999999999999999999999999999999999999999874

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.59  E-value=3.2e-07  Score=95.92  Aligned_cols=100  Identities=19%  Similarity=0.245  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIR--DATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~--d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      ..|+.+|..+...|++.+|...|..|+.++| ...+...+|.++.+.|+..-|..  .+..|++++|.++++|+.+|.++
T Consensus       685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~  764 (799)
T KOG4162|consen  685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF  764 (799)
T ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            3444555555555555555555555555555 55555555555555555444444  45555555555555555555555


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ..+|+.+.|..+|..|+.+++.+
T Consensus       765 k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  765 KKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             HHccchHHHHHHHHHHHhhccCC
Confidence            55555555555555555555444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.57  E-value=1.9e-06  Score=76.78  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             HHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          141 STEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       141 y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      +...+.+++   .+.+|+++|.+|...+++++|+..|.+++.+.|+.   ..+|+.+|.++..+|+|++|+..|.+++.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344444444   78899999999999999999999999999987764   569999999999999999999999999999


Q ss_pred             CCcHH
Q 044737          215 DFDEE  219 (399)
Q Consensus       215 dp~~~  219 (399)
                      +|++.
T Consensus       102 ~p~~~  106 (172)
T PRK02603        102 NPKQP  106 (172)
T ss_pred             CcccH
Confidence            99873

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.57  E-value=9.3e-07  Score=78.32  Aligned_cols=87  Identities=23%  Similarity=0.270  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--
Q 044737          134 LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK----------PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH--  200 (399)
Q Consensus       134 ~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~----------~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~--  200 (399)
                      |+.|.+.|...+..|| ++..+++=|.+++.+.+          +++|+.-+++||.++|+...+++.+|.||..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5789999999999999 99999999999887743          4678888999999999999999999999987763  


Q ss_pred             ---------HHHHHHHHHHHHhhCCcHHH
Q 044737          201 ---------WEEAVHDLHVASKIDFDEEI  220 (399)
Q Consensus       201 ---------~eeA~~~l~~Al~ldp~~~~  220 (399)
                               |++|..+|++|+.++|+|+.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                     78899999999999999964

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.1e-06  Score=84.49  Aligned_cols=127  Identities=17%  Similarity=0.091  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHH-------------------------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAI-------------------------  171 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai-------------------------  171 (399)
                      ...+..+|+.+...++.++|+-+|..|+.+.| ...+|-.+-.||+..+++.+|.                         
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~  413 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVL  413 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceee
Confidence            45677899999999999999999999999999 9999999999999888877644                         


Q ss_pred             -----------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHH
Q 044737          172 -----------RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRK  240 (399)
Q Consensus       172 -----------~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~  240 (399)
                                 ..++++|+++|.+..|-..++..+..-|++..++..++++|...||......|..+.......++...+
T Consensus       414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~  493 (564)
T KOG1174|consen  414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY  493 (564)
T ss_pred             ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence                       446667778899999999999999999999999999999999999998888888888888887777776


Q ss_pred             HHHH
Q 044737          241 YDRL  244 (399)
Q Consensus       241 ye~l  244 (399)
                      |...
T Consensus       494 y~~A  497 (564)
T KOG1174|consen  494 YYKA  497 (564)
T ss_pred             HHHH
Confidence            6543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.55  E-value=3.1e-07  Score=68.47  Aligned_cols=59  Identities=25%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          161 YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       161 ~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +++.|+|.+|+..|++++..+|++..+++.++.+|...|++++|...+.+++..+|++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            36789999999999999999999999999999999999999999999999999999974

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=2.3e-07  Score=93.37  Aligned_cols=108  Identities=22%  Similarity=0.187  Sum_probs=99.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHH
Q 044737          112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM---KKPNAAIRDATAALEINPDSAKG  187 (399)
Q Consensus       112 ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l---~~~~~Ai~d~~~Al~l~p~~~~a  187 (399)
                      -+....++..+..||..|....+..||.+|.+++...| .+.+|.|||.++++.   ++.-.|++||..|+++||...+|
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            45567789999999999999999999999999999999 999999999999885   36678999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |++++.++..++++.+|+.+...+....|.+.
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            99999999999999999998888888888663

>TIGR00540 hemY_coli hemY protein

Probab=98.54  E-value=1.7e-06  Score=87.91  Aligned_cols=128  Identities=16%  Similarity=0.008  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIM--YATRASVYIKMKKPNAAIRDATAALEINPDSA--KGYK  189 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~--~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~--~a~~  189 (399)
                      .+....+...+..+...|++++|+..+.++++..| +...  ..-+...++..++...++..++++++.+|+++  ..+.
T Consensus       260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~  339 (409)
T TIGR00540       260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR  339 (409)
T ss_pred             hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence            34566777889999999999999999999999999 5432  23344444556888999999999999999999  8888


Q ss_pred             HHHHHHHhcCCHHHHHHHHH--HHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHH
Q 044737          190 TRGMAHAMLGHWEEAVHDLH--VASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD  242 (399)
Q Consensus       190 ~~g~a~~~lg~~eeA~~~l~--~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye  242 (399)
                      .+|.+++..|+|++|.+.|+  ++++++|++.+...+..+...+++..+.+.+|+
T Consensus       340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~  394 (409)
T TIGR00540       340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ  394 (409)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999  688899999777788888777777666666554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.53  E-value=2.5e-06  Score=88.98  Aligned_cols=125  Identities=18%  Similarity=0.106  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHh--CC
Q 044737          117 AAAEAKAKAMEAISEGK---LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK--------PNAAIRDATAALEI--NP  182 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~---~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~--------~~~Ai~d~~~Al~l--~p  182 (399)
                      .|-.+..+|..++...+   +..|+.+|++||+++| ++.+|..++.||.....        ...+.....+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            35567788888887655   8899999999999999 99999999998866432        34555566666664  77


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHH
Q 044737          183 DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKY  241 (399)
Q Consensus       183 ~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~y  241 (399)
                      ..+.+|.-+|..+...|++++|...|++|+.++|+...+..+.++....++..++...|
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            78889999999999999999999999999999996555666666666555554444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.53  E-value=7.2e-07  Score=81.01  Aligned_cols=105  Identities=19%  Similarity=0.130  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..|.-++++|+.|=+.|-+.-|.-.|++++.+.| -+.+++-+|..+...++|+.|.+.++.++++||.+--++.+||.+
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            4677889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDEEI  220 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~~~  220 (399)
                      ++.-|+|.-|..++.+-..-||.++.
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999999999999999853

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.52  E-value=2.4e-06  Score=91.40  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=78.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN--PDSAKGYKTRGMAHAMLGH  200 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--p~~~~a~~~~g~a~~~lg~  200 (399)
                      .|.++...|++.+|+..|.+..+-.. ....|.|+|.||+.+++|..||+.|+.+++--  -+++..+..+|.+++..+.
T Consensus       652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~  731 (1018)
T KOG2002|consen  652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK  731 (1018)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence            46666677788888888877776666 67888899999999999999999999988853  3677888889999999999


Q ss_pred             HHHHHHHHHHHHhhCCcHH
Q 044737          201 WEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       201 ~eeA~~~l~~Al~ldp~~~  219 (399)
                      |.+|...+.+|+.+.|.|.
T Consensus       732 ~~eak~~ll~a~~~~p~~~  750 (1018)
T KOG2002|consen  732 LQEAKEALLKARHLAPSNT  750 (1018)
T ss_pred             HHHHHHHHHHHHHhCCccc
Confidence            9999999999999888773

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.52  E-value=2.1e-06  Score=70.32  Aligned_cols=93  Identities=17%  Similarity=0.078  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH----HHHHH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE----EIAAV  223 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~----~~~~~  223 (399)
                      ...++.+|.+++..++|.+|+..|.+++..+|++   ..+++.+|.++...++++.|+..|+.++..+|++    .+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3578999999999999999999999999999887   6799999999999999999999999999999885    23344


Q ss_pred             HHHHhHHHHhHHHHHHHHHH
Q 044737          224 LKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       224 lk~v~~~~~k~~e~~~~ye~  243 (399)
                      +..+....++..+....|..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~  101 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQ  101 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHH
Confidence            44444444554444444433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.51  E-value=1e-05  Score=77.60  Aligned_cols=122  Identities=14%  Similarity=0.098  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      .++...-+.|-...+|++||+..++...+.+      -+.+|+-+|..+....+++.|+..+.+|++.||+++.|-..+|
T Consensus       142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG  221 (389)
T COG2956         142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG  221 (389)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence            4566777888899999999999999999877      3789999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcH--HHHHHHHHHhHHHHhHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDE--EIAAVLKKVEPNALRIEEHRRK  240 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~--~~~~~lk~v~~~~~k~~e~~~~  240 (399)
                      .++...|+|+.|++.|+.+++.||+.  .+...|..+...+++..+....
T Consensus       222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f  271 (389)
T COG2956         222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF  271 (389)
T ss_pred             HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999986  5666777777777766655443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=2.9e-05  Score=77.26  Aligned_cols=103  Identities=17%  Similarity=0.072  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+.++||..|..|+|++|.+.|.+||..+. -..+++|+|..+-++++.++|+..|-+.-.+--+++..++.++.+|
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            367888999999999999999999999999888 7888888888888888888888888776555556788888888888


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ..+.+...|++.|.++..+-|+++
T Consensus       569 e~led~aqaie~~~q~~slip~dp  592 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDP  592 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCH
Confidence            888888888888888888877763

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.49  E-value=4.3e-06  Score=86.29  Aligned_cols=163  Identities=22%  Similarity=0.186  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-----  180 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-----  180 (399)
                      ..........+..|+.+|+|+.|+..|..|+++        .| -+....++|.+|..+++|.+|+..|.+|+.+     
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            344556667999999999999999999999999        67 6777778999999999999999999999987     


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc------HHHHHH---HHHHhHHHHhHHHHHHHHHHHHHHH
Q 044737          181 ---NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD------EEIAAV---LKKVEPNALRIEEHRRKYDRLRRER  248 (399)
Q Consensus       181 ---~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~------~~~~~~---lk~v~~~~~k~~e~~~~ye~l~~~~  248 (399)
                         +|..+..+.++|.+|...|+|++|..+|+.|++|--.      ..+...   +..+.....+++++..+|.+..+-.
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence               4556789999999999999999999999999987532      122222   2233445556666666655443311


Q ss_pred             H---------HHHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 044737          249 E---------ERKVER------ERLRRRAEAQAAYEKAKKEEQS  277 (399)
Q Consensus       249 e---------~kk~~~------er~~~~~~A~~~~~~~~k~~~~  277 (399)
                      .         ..+-+.      ....+..+|++.++++-.+.+.
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            1         000000      1344677888888888877765

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.8e-06  Score=84.97  Aligned_cols=97  Identities=16%  Similarity=0.101  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+.+.+..+++.++|.+||..++++|.++| |..+++.||.||+.+++|+.|+.+|.+|++++|+|-.+..-+..+...
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            4566899999999999999999999999999 999999999999999999999999999999999998777777776666


Q ss_pred             cCCHHHH-HHHHHHHHhhC
Q 044737          198 LGHWEEA-VHDLHVASKID  215 (399)
Q Consensus       198 lg~~eeA-~~~l~~Al~ld  215 (399)
                      ..++.+. .+.|...+..-
T Consensus       338 ~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            6655544 44555555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.46  E-value=4.5e-06  Score=84.48  Aligned_cols=128  Identities=18%  Similarity=0.110  Sum_probs=107.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      ...+........+..+...|++++|...+.++++..|+..+...++.  +..+++.+++..+++.++.+|+++..++.+|
T Consensus       258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lg  335 (398)
T PRK10747        258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLG  335 (398)
T ss_pred             HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            33445566778899999999999999999999995555544433333  3459999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD  242 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye  242 (399)
                      .++...++|++|...|++++++.|++.....+..+....++..+...+|+
T Consensus       336 rl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        336 QLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999877788888887777777666665

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.45  E-value=2.4e-06  Score=84.28  Aligned_cols=99  Identities=17%  Similarity=0.030  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AKGYKTRG  192 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~a~~~~g  192 (399)
                      ...+...|..+...|+|++|+..|.+++.++| +..++..+|.+|+..|++++|+..+++++.+.|..    ...|+.++
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la  193 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA  193 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence            34556788899999999999999999999999 99999999999999999999999999999998743    24577899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      .++..+|++++|+..|++++...|
T Consensus       194 ~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         194 LFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHCCCHHHHHHHHHHHhcccc
Confidence            999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.44  E-value=6.7e-06  Score=87.49  Aligned_cols=101  Identities=16%  Similarity=0.103  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ...|+..|.+|-..|+.++|+..+..|-.++| +...|..++....++++++.|+-+|++||+++|.+.+.+++++..|.
T Consensus       173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            35677899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+|++..|...|.+++.++|..
T Consensus       253 ~~G~~~~Am~~f~~l~~~~p~~  274 (895)
T KOG2076|consen  253 KTGDLKRAMETFLQLLQLDPPV  274 (895)
T ss_pred             HhChHHHHHHHHHHHHhhCCch
Confidence            9999999999999999999944

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.44  E-value=3.1e-07  Score=70.54  Aligned_cols=64  Identities=31%  Similarity=0.398  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEIN-------PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-------p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      +.+|.++|.+|..+++|++|+..|++|+.+.       |..+.+|+++|.++..+|++++|+..|++|+++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566677777777777777777777766541       122456677777777777777777777777654

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.43  E-value=5.1e-06  Score=85.75  Aligned_cols=99  Identities=31%  Similarity=0.287  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN------  181 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~------  181 (399)
                      -+..+...|..|...++|.+|+..|.+|+.+        +| .+..+.|+|.+|.+.|+|.+|...|++|+++-      
T Consensus       240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~  319 (508)
T KOG1840|consen  240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA  319 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence            3445557999999999999999999999987        56 89999999999999999999999999999873      


Q ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          182 --PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       182 --p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                        |.-+..+...+.++...+++++|+..|++++++-
T Consensus       320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence              3346688999999999999999999999999875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.42  E-value=4.8e-06  Score=77.65  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=90.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH  200 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~  200 (399)
                      ...++.++..|+-+.++....++...+| +..++.-.+...+..|+|..|+..+.++..++|++.++|.-+|.+|..+|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            4567788888888888888888888888 888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCcHH
Q 044737          201 WEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       201 ~eeA~~~l~~Al~ldp~~~  219 (399)
                      ++.|...|.+++++.|.+.
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p  168 (257)
T COG5010         150 FDEARRAYRQALELAPNEP  168 (257)
T ss_pred             hhHHHHHHHHHHHhccCCc
Confidence            9999999999999999884

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=1.5e-05  Score=74.16  Aligned_cols=125  Identities=21%  Similarity=0.191  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      -.+-.|..+-..+.|++|++.|+..|+-+| +..+|...-.+...+|+.-+||+....-++.-+.+..||..++.+|...
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence            345677888888999999999999999999 9999998888888899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcHHH-HHHHHHHhH---HHHhHHHHHHHHHHH
Q 044737          199 GHWEEAVHDLHVASKIDFDEEI-AAVLKKVEP---NALRIEEHRRKYDRL  244 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~~---~~~k~~e~~~~ye~l  244 (399)
                      ++|+.|+-+|++.+-+.|-+.. ...+.++.-   -+..+.-.+.+|.+.
T Consensus       168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a  217 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA  217 (289)
T ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999853 445555432   233444445555443

>PRK11906 transcriptional regulator; Provisional

Probab=98.38  E-value=3.7e-06  Score=84.62  Aligned_cols=97  Identities=16%  Similarity=0.035  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737          132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      .+-.+|+++..+|++++| ++.++..+|.++...+++..|+..+++|+.++|+++.+|+.+|.++...|+.++|+..+++
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            346689999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCcHHHHHHHHHHh
Q 044737          211 ASKIDFDEEIAAVLKKVE  228 (399)
Q Consensus       211 Al~ldp~~~~~~~lk~v~  228 (399)
                      |++++|--....++|.+-
T Consensus       398 alrLsP~~~~~~~~~~~~  415 (458)
T PRK11906        398 SLQLEPRRRKAVVIKECV  415 (458)
T ss_pred             HhccCchhhHHHHHHHHH
Confidence            999999886666666654

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=98.38  E-value=3.2e-07  Score=61.93  Aligned_cols=40  Identities=40%  Similarity=0.673  Sum_probs=37.7

Q ss_pred             CHHHHhhcCCHHHHHHHHHHhhChHHHHHhhc-CCcHHHHH
Q 044737          349 DPELMAAFSDPEVMAALQDVMKNPANLAQHQA-NPKVAPII  388 (399)
Q Consensus       349 dpe~~~~~~dp~~~~~~~~~~~np~~~~~~~~-~p~~~~~~  388 (399)
                      ||+++.+|+||.|+.++++|++||..+.+|++ ||.+++.|
T Consensus         1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhhC
Confidence            79999999999999999999999999999999 99998764

>TIGR00540 hemY_coli hemY protein

Probab=98.38  E-value=2.7e-05  Score=79.10  Aligned_cols=132  Identities=12%  Similarity=0.063  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-KGYKTRG  192 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-~a~~~~g  192 (399)
                      ..++.....+|...+..|+|..|.+.+.++.+..| ....|...|.++...|+++.|...+.++++..|++. .+...++
T Consensus        81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a  160 (409)
T TIGR00540        81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART  160 (409)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence            44677778888889999999999999999988888 777778888888889999999999999988888875 4555568


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      .++...++++.|...++..++..|++ .+...+..+....+++.+....+..+.+
T Consensus       161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k  215 (409)
T TIGR00540       161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK  215 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88888999999999999999999988 4566666766666666666655555553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.4e-06  Score=84.34  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=95.9

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C---------------C----CHHHHHHHHHHHHHcCCHHHHHH
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML-N---------------P----SAIMYATRASVYIKMKKPNAAIR  172 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~---------------P----~a~~~~nra~a~~~l~~~~~Ai~  172 (399)
                      .....++..++.++..|+.++|..|+..|.++++. +               +    ...++.|++.|-++++.|..|+.
T Consensus       217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~  296 (372)
T KOG0546|consen  217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF  296 (372)
T ss_pred             hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence            33455677888999999999999999999999864 1               1    24677889999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       173 d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+..+++.++..+++||+++.++..+.++++|++++..+....|++.
T Consensus       297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~  343 (372)
T KOG0546|consen  297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK  343 (372)
T ss_pred             ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence            99999999999999999999999999999999999999999999984

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.34  E-value=1.4e-05  Score=87.17  Aligned_cols=126  Identities=15%  Similarity=0.012  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----------  184 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----------  184 (399)
                      .....+......+...+++++|+..+..++..+| ...+|+..|..|++.++++.+...  .++.+-+.+          
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~  106 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC  106 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence            4456777888888899999999999999999999 999999999999988877765554  455544444          


Q ss_pred             ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          185 ---------AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       185 ---------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                               -.|++.+|.||..+|++++|...|++++++||+|. +...+.-..... .+.++..+|++.
T Consensus       107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720        107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence                     48999999999999999999999999999999983 333333332222 444444444433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.34  E-value=1e-05  Score=79.71  Aligned_cols=126  Identities=20%  Similarity=0.096  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH-------------------------------------HHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA-------------------------------------IMYATRASVY  161 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a-------------------------------------~~~~nra~a~  161 (399)
                      ....++..++..+++++|+..+.+++..+| +.                                     .++..+|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            344566677777777777777777776666 33                                     3334667788


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-----HHHHHHHHhHHHHhHHH
Q 044737          162 IKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-----IAAVLKKVEPNALRIEE  236 (399)
Q Consensus       162 ~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-----~~~~lk~v~~~~~k~~e  236 (399)
                      ..+|++.+|+..|+++++++|+++.++..+|.++...|++++|+..|++++.+.|.+.     .+..+..+....++..+
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            8899999999999999999999999999999999999999999999999999887431     12245555666677777


Q ss_pred             HHHHHHHHH
Q 044737          237 HRRKYDRLR  245 (399)
Q Consensus       237 ~~~~ye~l~  245 (399)
                      ....|+...
T Consensus       205 A~~~~~~~~  213 (355)
T cd05804         205 ALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHh
Confidence            777776654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.34  E-value=7.3e-06  Score=85.95  Aligned_cols=124  Identities=21%  Similarity=0.070  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ...|...+..+.+.+.-++|.-++.+|-.++| .+..|+.+|.++...+++.+|...|..|+.+||+++....-+|.+|.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            45667778888888888999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHH--HHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHH
Q 044737          197 MLGHWEEAVH--DLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKY  241 (399)
Q Consensus       197 ~lg~~eeA~~--~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~y  241 (399)
                      ..|+-.-|.+  .+..++++||.+ ++|..|..|....+...++.+.|
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf  777 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF  777 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence            9999888888  999999999998 88999999988888876665554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.33  E-value=2.1e-06  Score=65.83  Aligned_cols=66  Identities=21%  Similarity=0.268  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLN-------P-SAIMYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-------P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      .+.+..+...|..++..|+|++|+..|.+++.+.       | .+.++.++|.||..+|++++|+..+++|+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3567889999999999999999999999999762       2 4889999999999999999999999999986

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.32  E-value=1.4e-05  Score=80.50  Aligned_cols=121  Identities=12%  Similarity=0.040  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCC-CHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 044737          120 EAKAKAMEAISEGK---LDEAIELSTEAI---MLNP-SAIMYATRASVYIKM---------KKPNAAIRDATAALEINPD  183 (399)
Q Consensus       120 ~~k~~g~~~~~~g~---~~~Ai~~y~~Ai---~l~P-~a~~~~nra~a~~~l---------~~~~~Ai~d~~~Al~l~p~  183 (399)
                      .+..+|...+..+.   ...|+.+|++|+   .++| .+.+|..+|.||+..         ..-.+|++...+|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            44667777765554   467899999999   9999 999999999999875         1235788999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHH
Q 044737          184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRK  240 (399)
Q Consensus       184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~  240 (399)
                      ++.++..+|.++...++++.|...|++|+.++|+.. ++..+..+.-..+++.+....
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999984 455555555445555544443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.31  E-value=1.1e-05  Score=88.39  Aligned_cols=96  Identities=14%  Similarity=0.110  Sum_probs=68.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH  200 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~  200 (399)
                      ...|..+...|+|++|++.|+++++++| +..++..++.+|...+++.+|+..+.+++.++|++... ..++.++...++
T Consensus       106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~  184 (822)
T PRK14574        106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR  184 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch
Confidence            3446677777777777777777777777 77777777777777777777777777777777774433 444445545666


Q ss_pred             HHHHHHHHHHHHhhCCcH
Q 044737          201 WEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       201 ~eeA~~~l~~Al~ldp~~  218 (399)
                      +.+|+..|+++++++|++
T Consensus       185 ~~~AL~~~ekll~~~P~n  202 (822)
T PRK14574        185 NYDALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            666777777777777776

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.30  E-value=2.9e-05  Score=80.23  Aligned_cols=118  Identities=15%  Similarity=0.132  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..++.++..+|..++|.+.+......+...| ....+.-.|..+..+|+-++|...+..+++.++.+...|..+|.+++.
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            3567788888999999999999999999999 888888888888899999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEE  236 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e  236 (399)
                      -.+|++|+++|+.|++++|+| .+++-|.-++..++.+..
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999998 666666666666555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=2.9e-06  Score=81.32  Aligned_cols=117  Identities=13%  Similarity=0.143  Sum_probs=89.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhc
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP---DSAKGYKTRGMAHAML  198 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p---~~~~a~~~~g~a~~~l  198 (399)
                      ..|..||-.++.+-|+.+|.+.+..-- +..+|+|+|.|++..++|+-++..+.+|+..--   .-++.||++|.+....
T Consensus       329 cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i  408 (478)
T KOG1129|consen  329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI  408 (478)
T ss_pred             eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec
Confidence            345567777888888888888888877 888999999999999999999999999888632   3467899999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHH
Q 044737          199 GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRR  239 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~  239 (399)
                      |++.-|..+|+-||.-|+++ +....|.-+..+-.+|.+++.
T Consensus       409 GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars  450 (478)
T KOG1129|consen  409 GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS  450 (478)
T ss_pred             cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence            99999999999999988887 444445444444444444433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.28  E-value=2.9e-06  Score=81.70  Aligned_cols=93  Identities=16%  Similarity=0.114  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHH
Q 044737          154 YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNAL  232 (399)
Q Consensus       154 ~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~  232 (399)
                      ..-+|.-|+++|+|++||.+|.++|.++|-++..|.+|+.||+++.+|..|..+|..|+.||-.. .+......+...++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35689999999999999999999999999999999999999999999999999999999998655 33333344455667


Q ss_pred             hHHHHHHHHHHHHH
Q 044737          233 RIEEHRRKYDRLRR  246 (399)
Q Consensus       233 k~~e~~~~ye~l~~  246 (399)
                      .+.++++.|+..-+
T Consensus       180 ~~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  180 NNMEAKKDCETVLA  193 (536)
T ss_pred             hHHHHHHhHHHHHh
Confidence            77777666665443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.28  E-value=1.4e-05  Score=76.33  Aligned_cols=97  Identities=12%  Similarity=0.021  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH----HH
Q 044737          150 SAIMYATRASVY-IKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE----IA  221 (399)
Q Consensus       150 ~a~~~~nra~a~-~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~----~~  221 (399)
                      ....++..|.++ ++.++|.+|+..|+..|+..|++   +.+++++|.+|+..|+|++|+..|+++++..|++.    +.
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            457788888887 56799999999999999999998   57999999999999999999999999999999862    23


Q ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          222 AVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       222 ~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..+..+...+++....+..|+.+.+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344455556666666666665544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.27  E-value=6.4e-05  Score=76.10  Aligned_cols=133  Identities=14%  Similarity=0.078  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIM-YATRASVYIKMKKPNAAIRDATAALEINPDSAKG-YKTR  191 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~-~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a-~~~~  191 (399)
                      ...++......|..++..|+|+.|.+...++-...++..+ |...+.+..+.|+++.|...+.++.+.+|++.-+ ....
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~  159 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR  159 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            3446777788899999999999999777776665443333 4444555588999999999999999999888543 3455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +.++...|+++.|+..++++++.+|++ .+...+..+....+++.+....+..+.+
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k  215 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK  215 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            888999999999999999999999988 4566677777677777777666666654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=7.6e-06  Score=83.27  Aligned_cols=120  Identities=16%  Similarity=0.156  Sum_probs=84.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHH
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-------NPDSAKGYKTRGMAH  195 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-------~p~~~~a~~~~g~a~  195 (399)
                      .|..|...+++..|-..|.+|+.++| +...+.-+|.+.+..+.|.+|+.++..++..       .+.|...+.++|.++
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence            34444445555555555555555566 6666666777777777777777777777632       123556688999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      +++++|++|+..|+++|.+.|.+ .+...+.-+...++.+..+.++|-+
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK  514 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK  514 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence            99999999999999999999988 5566677776677777776666543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.24  E-value=1.7e-05  Score=82.72  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHh--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737          134 LDEAIELSTEAIML--NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       134 ~~~Ai~~y~~Ai~l--~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      +..|.....+++.+  +| .+.+|.-+|..+...+++++|...+++|+.++| +..+|..+|.++...|++++|+..|++
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45566666676664  66 788999999999999999999999999999999 578999999999999999999999999


Q ss_pred             HHhhCCcHHHHHHHHHH--hHHHHhH
Q 044737          211 ASKIDFDEEIAAVLKKV--EPNALRI  234 (399)
Q Consensus       211 Al~ldp~~~~~~~lk~v--~~~~~k~  234 (399)
                      |+.++|.++.+.+...+  +.+++.+
T Consensus       479 A~~L~P~~pt~~~~~~~~f~~~~~~~  504 (517)
T PRK10153        479 AFNLRPGENTLYWIENLVFQTSVETV  504 (517)
T ss_pred             HHhcCCCCchHHHHHhccccccHHHH
Confidence            99999998765554443  3444444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.23  E-value=1.3e-05  Score=80.55  Aligned_cols=95  Identities=23%  Similarity=0.257  Sum_probs=80.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH  200 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~  200 (399)
                      ...+..++..++..+||+.+.++|..+| ++.++...|..+++.++|+.|+..+.+|+.+.|+..+.|+.++.+|..+|+
T Consensus       204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence            3467777778888899999999999999 888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 044737          201 WEEAVHDLHVASKIDF  216 (399)
Q Consensus       201 ~eeA~~~l~~Al~ldp  216 (399)
                      |+.|+..+..+-.+.+
T Consensus       284 ~e~ALlaLNs~Pm~~~  299 (395)
T PF09295_consen  284 FENALLALNSCPMLTY  299 (395)
T ss_pred             HHHHHHHHhcCcCCCC
Confidence            9999877775544433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.19  E-value=3.1e-05  Score=83.09  Aligned_cols=114  Identities=14%  Similarity=0.045  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-AKGYKTRG  192 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-~~a~~~~g  192 (399)
                      +..+...++-+|-.++|..+..++.-||...-    -+..|+++|.+|..+|+|+.|..+|.+++..++++ .-+++.+|
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg  349 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG  349 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence            44666889999999999999999999998764    56679999999999999999999999999999998 88999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNA  231 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~  231 (399)
                      +.|...|+++.|+.+|++.++..|++ .+..+|.-+....
T Consensus       350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            99999999999999999999999998 5555666554444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=5.3e-05  Score=72.25  Aligned_cols=114  Identities=15%  Similarity=0.073  Sum_probs=94.0

Q ss_pred             CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHH
Q 044737          133 KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG---HWEEAVHDL  208 (399)
Q Consensus       133 ~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg---~~eeA~~~l  208 (399)
                      ..+..+..++.-|..|| ++.-|.-+|.+|+.++++..|+..|.+|+++.|+++..+.-+|.++....   .-.++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            46677778888899999 99999999999999999999999999999999999999999999988654   457889999


Q ss_pred             HHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          209 HVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       209 ~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ++++++||+|. ...+|........++.+....++.+-.
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            99999999994 445555555555566666655555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.14  E-value=0.00015  Score=62.54  Aligned_cols=98  Identities=23%  Similarity=0.215  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------------------HHHHHHHHHHHHHcCCHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----------------------AIMYATRASVYIKMKKPNAAIR  172 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----------------------a~~~~nra~a~~~l~~~~~Ai~  172 (399)
                      .....+...|......++...++..|.+++.+.. .                      ..++..++.++...+++..|+.
T Consensus         4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~   83 (146)
T PF03704_consen    4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR   83 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            4455667778888889999999999999998732 0                      3455677788889999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737          173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK  213 (399)
Q Consensus       173 d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~  213 (399)
                      .|.+++.++|.+-.+|..+-.+|...|++.+|+..|+++.+
T Consensus        84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988744

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.12  E-value=9.2e-05  Score=77.10  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+|+.+|.+|-.+|++++|+..+++||+..|+.+..|+.+|.+|...|++.+|...++.|..+|..|
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            3456678888888888888888888888888888888888888888888888888888888888766

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.11  E-value=0.0004  Score=62.07  Aligned_cols=118  Identities=19%  Similarity=0.126  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIML-NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SAKGYKTRGMA  194 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g~a  194 (399)
                      ......|+++...|+|.+|+.+|.+++.- .- +...+..++.+.+.++++..|...+++..+.+|.  .+...+..|.+
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~  169 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART  169 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence            34567899999999999999999999864 33 8899999999999999999999999999999985  46788999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEE  236 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e  236 (399)
                      |..+|++..|...|+.++..-|+-...-..........+..+
T Consensus       170 laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~e  211 (251)
T COG4700         170 LAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLRE  211 (251)
T ss_pred             HHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhH
Confidence            999999999999999999999987654444444333333333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.10  E-value=0.00012  Score=70.44  Aligned_cols=118  Identities=19%  Similarity=0.097  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-KGYKTRG  192 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-~a~~~~g  192 (399)
                      ...|.-+=+.+..+....+++.|+..+.+|+..+| .+.+-.-+|.+++..|+|..|++.++.+++.||++. ...-.+-
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            45566777889999999999999999999999999 888889999999999999999999999999999985 5778889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL  232 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~  232 (399)
                      .||..+|+.++.+..+.++.+..+..+...++.++.....
T Consensus       257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~  296 (389)
T COG2956         257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQE  296 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhh
Confidence            9999999999999999999999988765455554433333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.08  E-value=0.00014  Score=75.45  Aligned_cols=121  Identities=19%  Similarity=0.160  Sum_probs=96.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737          126 MEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       126 ~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      ...+...+|+.|..+|.+|....|...+|..-+....-+++.++|++.|++||+..|++.+.|.-+|+++..+++.+.|.
T Consensus       626 Kle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  626 KLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             HHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence            33445555666666666666555556667777777778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          206 HDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       206 ~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..|...++..|.. ..|-.|.++++....+-.++--..+.+.
T Consensus       706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            9999999999997 7788888888777666666655554444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.07  E-value=1.2e-05  Score=62.64  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=61.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHH
Q 044737          164 MKKPNAAIRDATAALEINPD--SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRK  240 (399)
Q Consensus       164 l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~  240 (399)
                      .++|+.|+..++++++.+|+  +...|+++|.||+.+|+|++|+..+++ +++++.+ ....++.++.-.+++..++...
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57899999999999999995  466788899999999999999999999 8888877 5555566666666665555554


Q ss_pred             HH
Q 044737          241 YD  242 (399)
Q Consensus       241 ye  242 (399)
                      ++
T Consensus        81 l~   82 (84)
T PF12895_consen   81 LE   82 (84)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.00013  Score=68.04  Aligned_cols=96  Identities=19%  Similarity=0.048  Sum_probs=87.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG--  199 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg--  199 (399)
                      .+-...-..|+--+||+.+.+-+...+ ++.+|.-++..|+..++|..|.-.+++++-++|-++-.+.++|.+++.+|  
T Consensus       125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~  204 (289)
T KOG3060|consen  125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA  204 (289)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            344445567777899999999999999 99999999999999999999999999999999999999999999999777  


Q ss_pred             -CHHHHHHHHHHHHhhCCcH
Q 044737          200 -HWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       200 -~~eeA~~~l~~Al~ldp~~  218 (399)
                       +++-|.++|.++++++|.+
T Consensus       205 eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  205 ENLELARKYYERALKLNPKN  224 (289)
T ss_pred             HHHHHHHHHHHHHHHhChHh
Confidence             5677999999999999955

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=6.3e-05  Score=74.26  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHH---H-------------------------------HHHHHHHHHHc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAI---M-------------------------------YATRASVYIKM  164 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~---~-------------------------------~~nra~a~~~l  164 (399)
                      -+-..|..+|..|++.+|+..|.++..++| +..   .                               |+--+...+..
T Consensus       234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~  313 (564)
T KOG1174|consen  234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE  313 (564)
T ss_pred             HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence            344789999999999999999999999998 421   1                               11122334456


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHH
Q 044737          165 KKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKK  226 (399)
Q Consensus       165 ~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~  226 (399)
                      ++|+.|+....++|.++|.+..+|..+|.+++.+++.++|+-.|+.|..+.|.. .+.+-|-.
T Consensus       314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h  376 (564)
T KOG1174|consen  314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH  376 (564)
T ss_pred             hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999876 54444433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.98  E-value=0.00026  Score=76.40  Aligned_cols=100  Identities=17%  Similarity=0.147  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~-~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      .....|...+..++|++||+...++++.+| +..++..+|.++..++. .++|..+|-.|.+++|++.-||.-++..|..
T Consensus         4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~   83 (1238)
T KOG1127|consen    4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER   83 (1238)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence            445677888999999999999999999999 99999999999999998 9999999999999999999999999999987


Q ss_pred             ---cCCHHHHHHHHHHHHhhCCcHH
Q 044737          198 ---LGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       198 ---lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                         .-+++++...|.+++-+.++..
T Consensus        84 ~~dIl~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   84 YNDILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             cchhhhhhHhHHHHHHHHHhhhhhh
Confidence               4468899999999988887654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.98  E-value=7.9e-05  Score=71.87  Aligned_cols=103  Identities=24%  Similarity=0.168  Sum_probs=82.9

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLN-----P--SAIMYATRASVYIKMKKPNAAIRDATAALEINP--D  183 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-----P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p--~  183 (399)
                      ...+.+..+...|+.|-..++|.+|..+|.+|..+.     +  .+..|.+.+.+|.+. ++..|+..+++|+.+.-  .
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G  108 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence            444556778888888889999999999999998763     2  577888888888766 99999999999999732  1


Q ss_pred             ----CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC
Q 044737          184 ----SAKGYKTRGMAHAML-GHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       184 ----~~~a~~~~g~a~~~l-g~~eeA~~~l~~Al~ldp  216 (399)
                          -++++.++|.+|... ++++.|+..|++|+.+--
T Consensus       109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~  146 (282)
T PF14938_consen  109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE  146 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                257899999999998 999999999999998854

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.97  E-value=9e-06  Score=52.49  Aligned_cols=32  Identities=31%  Similarity=0.504  Sum_probs=26.7

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737          174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67888888888888888888888888888875

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.97  E-value=3.4e-05  Score=80.74  Aligned_cols=124  Identities=19%  Similarity=0.152  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH-----------------------H-----HHHcCCHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRAS-----------------------V-----YIKMKKPNA  169 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~-----------------------a-----~~~l~~~~~  169 (399)
                      ...|-.....|...|+..+|-....+-|+.+|++.+|+-||.                       .     .+..++|.+
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~  503 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE  503 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence            344556667777778777777766666663335555543332                       2     233578999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHH
Q 044737          170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKY  241 (399)
Q Consensus       170 Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~y  241 (399)
                      +.++++..++++|-....||++|.|...++++..|+.+|..++.++|++ ..+..+...+-++++..+.....
T Consensus       504 ~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l  576 (777)
T KOG1128|consen  504 ADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL  576 (777)
T ss_pred             HHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 66777777665555544444433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.96  E-value=1.8e-05  Score=50.67  Aligned_cols=32  Identities=34%  Similarity=0.420  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      ++|+++|.+|..+++|++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34444455555555555555555555544443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.96  E-value=4e-05  Score=82.44  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ...|..+|..+.+.+++..||..|+.|++.+| +..+|..+|.+|...|+|..|++.+++|..++|.+.-+-|..+....
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            35667799999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+|+|.+|+..+...+......
T Consensus       642 d~GkYkeald~l~~ii~~~s~e  663 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLIIYAFSLE  663 (1238)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888765443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.96  E-value=0.001  Score=62.35  Aligned_cols=102  Identities=16%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKT  190 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~  190 (399)
                      +..|.+.|...++.|+|.+|+..|.......|    .-.+...++.++++.++|..|+..+++-+.+.|.++   -++|.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            56899999999999999999999999999988    578889999999999999999999999999999875   47888


Q ss_pred             HHHHHHhcC--------CHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAMLG--------HWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~lg--------~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.+++..=        --.+|+..++..+..-|+..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            888876542        23568888999999999863

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.95  E-value=1.5e-05  Score=51.04  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS  184 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~  184 (399)
                      +.+|+++|.+|+.+++|++|+..|++||+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.95  E-value=0.0005  Score=71.35  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      -|...|..+-..++|++||.+|+.|+.+.| |..+|.-++....++++|......-.+.+++.|.....|.-.+.++..+
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL  156 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            567788888889999999999999999999 9999999999999999999988888899999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhC
Q 044737          199 GHWEEAVHDLHVASKID  215 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ld  215 (399)
                      |+|..|...++...+..
T Consensus       157 g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  157 GEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999988877666554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.89  E-value=0.00016  Score=60.69  Aligned_cols=67  Identities=18%  Similarity=0.044  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+++++|.+|-.+|++++|+..|.+++....+.   ..++..+|.+|..+|++++|+..+++++...|++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            468899999999999999999999999976544   5799999999999999999999999999998884

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.00051  Score=66.32  Aligned_cols=69  Identities=26%  Similarity=0.321  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+.-|..-|+-|++-++|..|+..|+++|+.+..+    +..|.+|+.|++.+|+|..|+.++.+|++++|++
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h  152 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH  152 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence            45566678999999999999999999999987655    5689999999999999999999999999999998

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.87  E-value=3.3e-05  Score=52.72  Aligned_cols=42  Identities=21%  Similarity=0.418  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      .+|..+|.+|..+|++++|++.|+++|+++|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467788888888889988998888899888888888888775

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.83  E-value=0.00085  Score=61.49  Aligned_cols=101  Identities=17%  Similarity=0.093  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCC
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKK-----------PNAAIRDATAALEINPD  183 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~-----------~~~Ai~d~~~Al~l~p~  183 (399)
                      ..+...|..+++.++|..|+..|.+.|+..|    ...+++.+|.|++++..           ...|+..|+..|...|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            4567889999999999999999999999999    35788899999877532           35899999999999999


Q ss_pred             CHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          184 SAK-----------------GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       184 ~~~-----------------a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +..                 --+..|..|...+.|..|+.-|+.+++.-|+..
T Consensus       123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~  175 (203)
T PF13525_consen  123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP  175 (203)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence            832                 234467789999999999999999999999874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.83  E-value=0.00011  Score=71.14  Aligned_cols=100  Identities=18%  Similarity=0.068  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK--KPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~--~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      .....-..+++.++++.|...+....+.+. .......-|.+.+..|  ++..|...|+......+.++..+..++.|+.
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l  212 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL  212 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            334456678899999999999998887777 5444444455555555  5899999999988877888999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|+|++|...+.+|+..+|.+.
T Consensus       213 ~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  213 QLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             HCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             HhCCHHHHHHHHHHHHHhccCCH
Confidence            99999999999999999999884

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.82  E-value=0.00055  Score=56.68  Aligned_cols=95  Identities=22%  Similarity=0.310  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLN---P----------SAIMYATRASVYIKMKKPNAAIRDATAALE-------  179 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~---P----------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~-------  179 (399)
                      .....|...+..+-|++|...|.+|+...   |          ++.+|..++.++..||+|++++...+++|.       
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE   90 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE   90 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence            34466777888999999999999999862   2          478999999999999999999988888876       


Q ss_pred             hCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          180 INPD----SAKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       180 l~p~----~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      |+.+    |+.+.++|+.++..+|+.++|+..|+.+.+.
T Consensus        91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4555    4567788999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.80  E-value=0.00027  Score=68.19  Aligned_cols=102  Identities=22%  Similarity=0.171  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 044737          116 EAAAEAKAKAMEAISE-GKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPD----  183 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~-g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~----  183 (399)
                      ..+..+...|..+... +++++|+++|.+|+.+.-       ...++.+.|.++.++++|.+|+..|++++...-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            4467788888888888 999999999999999832       4678889999999999999999999999875321    


Q ss_pred             --CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          184 --SA-KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       184 --~~-~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                        ++ ..++..+.|++..|++..|...|++...++|.
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence              23 35667888999999999999999999999984

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.79  E-value=0.0005  Score=69.27  Aligned_cols=106  Identities=24%  Similarity=0.169  Sum_probs=92.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737          130 SEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH  209 (399)
Q Consensus       130 ~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~  209 (399)
                      ..++|+.|+..|.+....+|.  ..+.+|.+|+..++..+|++.+.++|..+|.+...+...+..+...++++.|+...+
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk  258 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK  258 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            457899999999999999883  233478888889999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCcH-HHHHHHHHHhHHHHhHHHH
Q 044737          210 VASKIDFDE-EIAAVLKKVEPNALRIEEH  237 (399)
Q Consensus       210 ~Al~ldp~~-~~~~~lk~v~~~~~k~~e~  237 (399)
                      +|+.+.|++ ..|..|.++.-.+++++.+
T Consensus       259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  259 KAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            999999998 6788888877666665544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.79  E-value=0.0014  Score=61.83  Aligned_cols=101  Identities=16%  Similarity=0.079  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcC---------------C---HHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMK---------------K---PNAAIRDATA  176 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~---------------~---~~~Ai~d~~~  176 (399)
                      ......|..+++.++|.+|+..|++.|+++|    ...+++.+|.|+..++               +   -..|+..+++
T Consensus        70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~  149 (243)
T PRK10866         70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK  149 (243)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence            3477899999999999999999999999999    4678899999976654               1   2478899999


Q ss_pred             HHHhCCCCHH---H--------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          177 ALEINPDSAK---G--------------YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       177 Al~l~p~~~~---a--------------~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .|+..|++.-   +              -+..|.-|.+.|.|..|+.-++.+++--|+..
T Consensus       150 li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~  209 (243)
T PRK10866        150 LVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ  209 (243)
T ss_pred             HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc
Confidence            9999998831   2              23456668899999999999999999998863

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.77  E-value=0.00013  Score=79.75  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHH-----------------HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAI-----------------ELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai-----------------~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      ..+.-.|..+++.+++..|.                 .+|...|...+ +-.+++.+|.||-++|++.+|+..++++|++
T Consensus        66 ~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~  145 (906)
T PRK14720         66 SALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA  145 (906)
T ss_pred             ehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            34555555566655555544                 44444444444 4589999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          181 NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       181 ~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      +|+++.++.++|..|... ++++|+..+.+|+....+
T Consensus       146 D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        146 DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence            999999999999999999 999999999999887543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.00036  Score=65.90  Aligned_cols=95  Identities=15%  Similarity=0.017  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHH---HH
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAA---VL  224 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~---~l  224 (399)
                      .-+++.|..+++.|+|..|...|..-|+..|++   +.|+||+|.+++.+|+|+.|...|..+++-.|+. .+.+   .|
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            337899999999999999999999999999987   5799999999999999999999999999999986 2223   34


Q ss_pred             HHHhHHHHhHHHHHHHHHHHHH
Q 044737          225 KKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       225 k~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..+...+++..+++..|+.+.+
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Confidence            4445667777777777666655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.00028  Score=68.00  Aligned_cols=96  Identities=14%  Similarity=0.108  Sum_probs=90.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWE  202 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~e  202 (399)
                      +.|..|++.|-+.+|-..+..++...|....|..++.+|.++.++..|+..+...+..-|.++-.++-.+++|..+++++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~  307 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE  307 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence            67999999999999999999999999967778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCcH
Q 044737          203 EAVHDLHVASKIDFDE  218 (399)
Q Consensus       203 eA~~~l~~Al~ldp~~  218 (399)
                      +|++.|+.+++++|.|
T Consensus       308 ~a~~lYk~vlk~~~~n  323 (478)
T KOG1129|consen  308 DALQLYKLVLKLHPIN  323 (478)
T ss_pred             HHHHHHHHHHhcCCcc
Confidence            9999999999999987

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.74  E-value=0.00088  Score=56.60  Aligned_cols=62  Identities=27%  Similarity=0.331  Sum_probs=57.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          157 RASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       157 ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .|.+....++.+.|++.|.++|.+-|..+.+|.+|+.+++..|+.++|+.++.+|+++.-+-
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            56666788999999999999999999999999999999999999999999999999998654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=7.9e-05  Score=47.33  Aligned_cols=31  Identities=23%  Similarity=0.354  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 044737          153 MYATRASVYIKMKKPNAAIRDATAALEINPD  183 (399)
Q Consensus       153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~  183 (399)
                      +|+.+|.+|+.+++|.+|+.+|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4445555555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=0.0001  Score=46.80  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          185 AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       185 ~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +++|+.+|.++..+|+|++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10941 hypothetical protein; Provisional

Probab=97.68  E-value=0.00043  Score=66.19  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV  227 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v  227 (399)
                      .....|+=.+|++.++|+.|++.++..+.++|+++.-+.-||.+|..++.+..|+.+|+..++..|++.....++..
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999877766654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.67  E-value=4.5e-05  Score=49.17  Aligned_cols=32  Identities=34%  Similarity=0.444  Sum_probs=30.4

Q ss_pred             HHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044737          140 LSTEAIMLNP-SAIMYATRASVYIKMKKPNAAI  171 (399)
Q Consensus       140 ~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai  171 (399)
                      +|++||+++| ++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            4899999999 9999999999999999999986

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.65  E-value=0.00031  Score=69.60  Aligned_cols=95  Identities=18%  Similarity=0.258  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP--------------S-----AIMYATRASVYIKMKKPNAAIRDATAAL  178 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--------------~-----a~~~~nra~a~~~l~~~~~Ai~d~~~Al  178 (399)
                      .+.....|..+|++++|..|+..|..||+++.              +     ..+-..+..||++++++..|+....+.|
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            34455678889999999999999999998742              0     2344678999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044737          179 EINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVAS  212 (399)
Q Consensus       179 ~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al  212 (399)
                      -+||.+..-++|.|.+++.|.+|.+|...+--|.
T Consensus       256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988776654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00016  Score=66.85  Aligned_cols=75  Identities=25%  Similarity=0.297  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHh
Q 044737          154 YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVE  228 (399)
Q Consensus       154 ~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~  228 (399)
                      +.--+..|+.-.+|..||..|.+||.++|..+..|.+++.+|+.+.+|+.+..++++|+.++|+. .....|+.+.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            34456677788899999999999999999999999999999999999999999999999999987 3344555543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.56  E-value=0.0012  Score=64.09  Aligned_cols=96  Identities=17%  Similarity=0.102  Sum_probs=79.8

Q ss_pred             HHHHHHHcC--CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737          124 KAMEAISEG--KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH  200 (399)
Q Consensus       124 ~g~~~~~~g--~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~  200 (399)
                      .+...+..|  +|.+|.-.|.+.....+ +..++..+|.|++.+|+|++|...+.+|+..+|.++.++.++..+...+|+
T Consensus       171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence            333444444  69999999999777777 999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHHHhhCCcHH
Q 044737          201 W-EEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       201 ~-eeA~~~l~~Al~ldp~~~  219 (399)
                      . +.+.+.+.+....+|+..
T Consensus       251 ~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  251 PTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             TCHHHHHHHHHCHHHTTTSH
T ss_pred             ChhHHHHHHHHHHHhCCCCh
Confidence            9 556667788888899876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.56  E-value=0.00098  Score=58.64  Aligned_cols=97  Identities=6%  Similarity=-0.096  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHH-HHHHHHHh
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI-AAVLKKVE  228 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~  228 (399)
                      .....+..|.-++..|++.+|...|.-.+-++|-+++.|+-+|.++..+++|++|+..|..|..++++|.. .-....+.
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~  115 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence            56677888889999999999999999999999999999999999999999999999999999999988743 34555566


Q ss_pred             HHHHhHHHHHHHHHHHHH
Q 044737          229 PNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       229 ~~~~k~~e~~~~ye~l~~  246 (399)
                      -.+++...++..+.....
T Consensus       116 l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        116 LLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHhCCHHHHHHHHHHHHh
Confidence            666676777666655444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.0012  Score=64.33  Aligned_cols=95  Identities=18%  Similarity=0.081  Sum_probs=75.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHhCC------
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAA--------------LEINP------  182 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~A--------------l~l~p------  182 (399)
                      .|-.+|..|+|++|+..|+-+...+. .+.++.|+|.|++-+|.|.+|.....+|              .+++.      
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~  142 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT  142 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence            46789999999999999999888766 9999999999999999999988776554              22221      


Q ss_pred             ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          183 ------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       183 ------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                            |...--+.++.+++..-.|.+|+..|.+.+.-+|+.
T Consensus       143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey  184 (557)
T KOG3785|consen  143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY  184 (557)
T ss_pred             HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence                  122334557777888888999999999988887775

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.54  E-value=0.0036  Score=65.33  Aligned_cols=99  Identities=18%  Similarity=0.085  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      ....+.-.+.-+-..|+|++|+...++||...| ...+|..+|.+|-..|++.+|....+.|-.+|..+.-.-...+..+
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            356778889999999999999999999999999 9999999999999999999999999999999999888888888899


Q ss_pred             HhcCCHHHHHHHHHHHHhhC
Q 044737          196 AMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ld  215 (399)
                      .+.|+.++|...+..-.+-+
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCC
Confidence            99999999999988776655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=6.9e-05  Score=73.97  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044737          252 KVERERLRRRAEAQAAYEKAKKEEQSSSSER  282 (399)
Q Consensus       252 k~~~er~~~~~~A~~~~~~~~k~~~~d~g~~  282 (399)
                      ++++++|+.+.+|+++|++++||+.||.-..
T Consensus        41 ~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~   71 (371)
T COG0484          41 KEAEEKFKEINEAYEVLSDPEKRAAYDQFGH   71 (371)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHhhccCc
Confidence            4566799999999999999999999995543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.0034  Score=64.79  Aligned_cols=124  Identities=14%  Similarity=0.161  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+...-+.+.+.++|++|+....+.|.+.| ...++...-.|++++.+|+.|+.+..+-..+.-.+. ..+.++.|+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence            4566666777888888888888888888888 777777777777788888877754333222111111 12566777777


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +++.++|+.++.   -+++.+. +..+...+.-++.++.++.+-|+.|.+
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k  138 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK  138 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            888888877777   3333332 344444555566666666666666643

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.47  E-value=0.00045  Score=73.23  Aligned_cols=108  Identities=25%  Similarity=0.273  Sum_probs=99.1

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKM--KKPNAAIRDATAALEINPD  183 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l--~~~~~Ai~d~~~Al~l~p~  183 (399)
                      .+..+..+..++..+|.+|..++|..|.-.|..++.+-|     .+.++.|++.||+.+  ++|..++..|+-|+...|.
T Consensus        46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~  125 (748)
T KOG4151|consen   46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR  125 (748)
T ss_pred             hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch
Confidence            445567888999999999999999999999999999877     578889999998765  5899999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ..++++.|+.+|..+++++-|++++.-....+|.+
T Consensus       126 i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  126 ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999998

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.46  E-value=0.001  Score=65.89  Aligned_cols=63  Identities=21%  Similarity=0.313  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDS------AKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      .+|-|+|..|+-+|+|..||..-..-|++-..+      ..||.++|.+|..+|+++.|++.|++.+.+
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            445555555555555555555554444443222      235555555555556665555555555443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.44  E-value=0.0003  Score=70.86  Aligned_cols=94  Identities=20%  Similarity=0.182  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHH-HHhH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLK-KVEP  229 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk-~v~~  229 (399)
                      +..+.+-+..+++-+.|+.|+..|.+||+++|+++..|-+|+.+|...++|..|+.|+.+|++++|........+ .+.-
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            345667788889999999999999999999999999999999999999999999999999999999864322222 3334


Q ss_pred             HHHhHHHHHHHHHHH
Q 044737          230 NALRIEEHRRKYDRL  244 (399)
Q Consensus       230 ~~~k~~e~~~~ye~l  244 (399)
                      ++.+..++...++..
T Consensus        84 ~l~~~~~A~~~l~~~   98 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKV   98 (476)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            444444444444333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.43  E-value=0.005  Score=62.16  Aligned_cols=127  Identities=20%  Similarity=0.107  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ...|..-|.--..++++..|...|.+||..+- ++.+|...+.+-++.+..+.|....++|+.+-|.--+.|+..-..--
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34455666666678889999999999999999 99999999999999999999999999999999999999999998999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      .+|+...|.+.|++=+...|+..++...-..+-+.+.+..++.-|++.
T Consensus       153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf  200 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF  200 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999999999877766666666667766666666543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.39  E-value=0.0052  Score=60.70  Aligned_cols=125  Identities=21%  Similarity=0.133  Sum_probs=100.7

Q ss_pred             cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737          110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      .+.+......-....+..+...|++++|.+...++++..-+..++.  =.-.++.+++..=++..++.++..|+++..++
T Consensus       255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~  332 (400)
T COG3071         255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS  332 (400)
T ss_pred             ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH--HHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence            3444444455566677888999999999999999998866333222  22345778999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHH
Q 044737          190 TRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEE  236 (399)
Q Consensus       190 ~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e  236 (399)
                      .+|..+++.+.|.+|...|+.|++..|+.....++..+...+.+.+.
T Consensus       333 tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~  379 (400)
T COG3071         333 TLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE  379 (400)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence            99999999999999999999999999998877788877666665433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.33  E-value=0.0042  Score=64.83  Aligned_cols=99  Identities=15%  Similarity=0.019  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      |..-++..--.++.++|+++++++|+..| .+.+|.-+|+++-++++.+.|...|...++..|..+..|..++.+--..|
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            34445555566788889999999999999 88999999999999999999999999999999999989988888888888


Q ss_pred             CHHHHHHHHHHHHhhCCcHH
Q 044737          200 HWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       200 ~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ..-.|...|.++.-.+|.+.
T Consensus       734 ~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  734 QLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             chhhHHHHHHHHHhcCCCcc
Confidence            88889999999988888874

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.0025  Score=62.19  Aligned_cols=86  Identities=17%  Similarity=0.090  Sum_probs=76.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 044737          126 MEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE  203 (399)
Q Consensus       126 ~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee  203 (399)
                      ..++...+|.-||.+++-.+.++.  ...+-.++|.||+.+|+|++|+..|+-+..-+....+.+.+++.+++.+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            347788999999999998887776  567888999999999999999999999998877788999999999999999999


Q ss_pred             HHHHHHHH
Q 044737          204 AVHDLHVA  211 (399)
Q Consensus       204 A~~~l~~A  211 (399)
                      |.....+|
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98765554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.30  E-value=0.00045  Score=47.02  Aligned_cols=34  Identities=26%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|+.+|.+|..+|++++|+..|+++++++|++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            5789999999999999999999999999999994

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.27  E-value=0.018  Score=49.85  Aligned_cols=98  Identities=28%  Similarity=0.323  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRAS-VYIKMKKPNAAIRDATAALEINP---DSAKGYKTRGMA  194 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~-a~~~l~~~~~Ai~d~~~Al~l~p---~~~~a~~~~g~a  194 (399)
                      .+...+..+...++|..|+..+..++...+ ....+..... ++...+++..|+..+.+++.++|   .....++.++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (291)
T COG0457          97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL  176 (291)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence            344444455555555555555555555544 3233333333 45555555555555555555444   234444444444


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCc
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      +...++++.|+..+.+++...+.
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcc
Confidence            55555555555555555555554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.26  E-value=0.0064  Score=58.63  Aligned_cols=123  Identities=15%  Similarity=-0.034  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIK-MKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~-l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      |....+...+.+..+.|...|.+|++..+ ...+|...|...+. .++...|...|+.+++.-|.+...|.....-+..+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            34444555566668999999999986666 78889988988777 45666699999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcHH----HHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          199 GHWEEAVHDLHVASKIDFDEE----IAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~~----~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      ++.+.|...|++++..-+.+.    ++...-+.+...+.+......+++
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R  132 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR  132 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999887765    444444444555544444443333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.0088  Score=61.78  Aligned_cols=90  Identities=22%  Similarity=0.202  Sum_probs=75.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN-------------------  181 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-------------------  181 (399)
                      ++++.++|+.++.++|+.+++   -+++ +..+..-+|.+++++++|++|+..|+..++-+                   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            588999999999999999998   4566 66788889999999999999999998875432                   


Q ss_pred             -----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          182 -----------PD-SAKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       182 -----------p~-~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                                 |+ +-..+|+.+.++...|+|.+|++.+++|+++
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence                       22 3467899999999999999999999999544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.21  E-value=0.0013  Score=67.72  Aligned_cols=96  Identities=20%  Similarity=0.129  Sum_probs=87.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW  201 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~  201 (399)
                      .|...--.|+...|+.++..|+...|  ......++|.+.++-+-...|-..+.++|.++..-+-.++.+|.++..+.+.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i  692 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI  692 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence            34444457899999999999999999  7788899999999999999999999999999988888999999999999999


Q ss_pred             HHHHHHHHHHHhhCCcHH
Q 044737          202 EEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       202 eeA~~~l~~Al~ldp~~~  219 (399)
                      +.|++.|+.|++++|++.
T Consensus       693 ~~a~~~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCP  710 (886)
T ss_pred             HHHHHHHHHHHhcCCCCh
Confidence            999999999999999984

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.21  E-value=0.014  Score=65.99  Aligned_cols=91  Identities=16%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIML----NPSAIMYATRASVYIKMKKPNAAIRDATAALEIN-PDSAKGYKTRGMAHAM  197 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l----~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-p~~~~a~~~~g~a~~~  197 (399)
                      .....+.+.|++++|.+.|.+....    .|+...|..+-.+|.+.|++++|++.|+...+.+ +.+...|..+..+|.+
T Consensus       547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k  626 (1060)
T PLN03218        547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ  626 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence            3344444455555555555544431    2244444445555555555555555555554443 2334445555555555


Q ss_pred             cCCHHHHHHHHHHHHh
Q 044737          198 LGHWEEAVHDLHVASK  213 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~  213 (399)
                      .|++++|+..|....+
T Consensus       627 ~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        627 KGDWDFALSIYDDMKK  642 (1060)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.19  E-value=0.0006  Score=43.28  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      ++|+.+|.+|..+|++++|+..|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455555555555555555555555555555

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.18  E-value=0.031  Score=55.31  Aligned_cols=132  Identities=14%  Similarity=0.077  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP-DSAKGYKTRG  192 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p-~~~~a~~~~g  192 (399)
                      ..++......|..-+..|+|.+|.++..++-+-.+ ...+|..-+.+--+.|++..|=.+..+|-++-+ +....+..++
T Consensus        81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra  160 (400)
T COG3071          81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA  160 (400)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence            45677778889999999999999999999888888 788888888888999999999999999999943 4556788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..+...+++..|...+.++++..|.+. ...+..++.-..+.+.+.......+.+
T Consensus       161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k  215 (400)
T COG3071         161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK  215 (400)
T ss_pred             HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999999999999984 344444444444444444444444444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.18  E-value=0.0017  Score=64.49  Aligned_cols=95  Identities=19%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLN----P---SAIMYATRASVYIKMKKPNAAIRDATAALEIN------PDSAK  186 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~----P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~------p~~~~  186 (399)
                      ++.+.||.+.-.|+|+.|+++|..++.+.    .   .+...+.+|.+|.-+++|+.||.+..+-|.+-      -....
T Consensus       237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R  316 (639)
T KOG1130|consen  237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR  316 (639)
T ss_pred             hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            44577888888899999999988776652    2   56777788999999999999999888766552      22357


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      +++.+|.+|..+|..+.|+....+.+++
T Consensus       317 acwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  317 ACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            8889999999999999998888777765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.16  E-value=0.0068  Score=54.65  Aligned_cols=106  Identities=22%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-KGYKTRG  192 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-~a~~~~g  192 (399)
                      +-.....+..++..+++++|+..+..++...-    .+.+-.++|.+.+.++++++|+..++....  +.+. ..--.+|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence            44667889999999999999999999996643    567778899999999999999998765432  3333 2355689


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLK  225 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk  225 (399)
                      .++...|+-++|...|.+|+..++++...+++.
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lq  199 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESDASPAAREILQ  199 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHccCChHHHHHHH
Confidence            999999999999999999999987765444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0014  Score=62.64  Aligned_cols=92  Identities=14%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI----NPDS--------  184 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l----~p~~--------  184 (399)
                      |....+.|...|+.|+|+.|+..|+.|+...- +..+-+|+|.|+++.++|..|++.....|+.    .|..        
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg  223 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG  223 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence            45667789999999999999999999999988 8888899999999999999999988777664    3332        


Q ss_pred             -----------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737          185 -----------------AKGYKTRGMAHAMLGHWEEAVHDLH  209 (399)
Q Consensus       185 -----------------~~a~~~~g~a~~~lg~~eeA~~~l~  209 (399)
                                       +.++..++.+++..++++.|.+.+.
T Consensus       224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                             5688889999999999999887654

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.15  E-value=0.018  Score=65.14  Aligned_cols=84  Identities=13%  Similarity=0.123  Sum_probs=35.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Q 044737          128 AISEGKLDEAIELSTEAIMLN--PSAIMYATRASVYIKMKKPNAAIRDATAALEIN-PDSAKGYKTRGMAHAMLGHWEEA  204 (399)
Q Consensus       128 ~~~~g~~~~Ai~~y~~Ai~l~--P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-p~~~~a~~~~g~a~~~lg~~eeA  204 (399)
                      |.+.|++++|+..|.+.....  |+...|..+..+|.+.+++++|+..+...++.. +.+...|..+..+|...|++++|
T Consensus       624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA  703 (1060)
T PLN03218        624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA  703 (1060)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            334444444444444333331  133344444444444444444444444444332 12333444444444444444444


Q ss_pred             HHHHHHH
Q 044737          205 VHDLHVA  211 (399)
Q Consensus       205 ~~~l~~A  211 (399)
                      +..|+..
T Consensus       704 ~~lf~eM  710 (1060)
T PLN03218        704 LELYEDI  710 (1060)
T ss_pred             HHHHHHH
Confidence            4444444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.14  E-value=0.004  Score=53.60  Aligned_cols=70  Identities=16%  Similarity=0.057  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ....+++.|...++.++|.+|+..++.+....|-.   .++.+.++.+|+..++|++|+..+++-++|+|+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            67788899999999999999999999999988754   57999999999999999999999999999999973

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.12  E-value=0.0023  Score=58.69  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI  220 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~  220 (399)
                      .+.+++.||..|-.+|-+.-|..|++++|.++|+-+.++..+|.-+...|+|+.|.+.|...+++||.+..
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y  134 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  134 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence            67888899999999999999999999999999999999999999999999999999999999999998753

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.12  E-value=0.04  Score=47.60  Aligned_cols=99  Identities=26%  Similarity=0.259  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIM--LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM-  193 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~--l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~-  193 (399)
                      .......+..+...+++..++..+..++.  ..+ ....+...+.++..++++..++..+..++..++.....+...+. 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            45667788889999999999999999998  677 89999999999999999999999999999998888666777777 


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCC
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      ++...++++.|+..|.+++.++|
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCC
Confidence            89999999999999999988877

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.12  E-value=0.013  Score=52.20  Aligned_cols=107  Identities=21%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhH-
Q 044737          167 PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH----------WEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRI-  234 (399)
Q Consensus       167 ~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~----------~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~-  234 (399)
                      |+.|.+.++.+...||.++.++++.|.++..+.+          +++|+.-|+.|+.|+|+. .+.-.+..+...+..+ 
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            7889999999999999999999999999988744          567889999999999997 4444455544433332 


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044737          235 ----------EEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKK  273 (399)
Q Consensus       235 ----------~e~~~~ye~l~~~~e~kk~~~er~~~~~~A~~~~~~~~k  273 (399)
                                ..+..+|++.-.+.-....|++..+-..+|-+.+.+-.+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~  135 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHK  135 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHH
Confidence                      222233333333333344566665555666665554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.11  E-value=0.0009  Score=42.45  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS  184 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~  184 (399)
                      +.+|+.+|.+|.++++++.|+..+.++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3578889999999999999999999999988853

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.10  E-value=0.073  Score=47.95  Aligned_cols=95  Identities=14%  Similarity=0.068  Sum_probs=83.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCHH
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALE-INPDSAKGYKTRGMAHAMLGHWE  202 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~-l~p~~~~a~~~~g~a~~~lg~~e  202 (399)
                      .+...-+.=+.+.+++..++.+.+.|...-.+.+|.+...+|++.+|...|.+++. +--+++..++-++.+.+.++++.
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A  141 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA  141 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence            44455566688999999999999999666678899999999999999999999887 56678899999999999999999


Q ss_pred             HHHHHHHHHHhhCCcH
Q 044737          203 EAVHDLHVASKIDFDE  218 (399)
Q Consensus       203 eA~~~l~~Al~ldp~~  218 (399)
                      .|...+++..+.+|.-
T Consensus       142 ~a~~tLe~l~e~~pa~  157 (251)
T COG4700         142 AAQQTLEDLMEYNPAF  157 (251)
T ss_pred             HHHHHHHHHhhcCCcc
Confidence            9999999999998753

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.0098  Score=56.06  Aligned_cols=101  Identities=15%  Similarity=0.152  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH----HHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELST----EAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~----~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      -....|....+.|+.+.|-..|+    .+-.++-   +...+.|.+.+|+-.++|..|...+++++..||.++.+-.++|
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA  293 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA  293 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence            34467788888888888888887    3444444   5667778888888889999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDEEI  220 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~~  220 (399)
                      .|+..+|+...|++.++.++.++|....
T Consensus       294 LcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  294 LCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccch
Confidence            9999999999999999999999998643

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.02  E-value=0.0039  Score=44.44  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHH
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAA  222 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~  222 (399)
                      .+|.+|.+++++|+|++|...++.+|+++|+|....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            566777777777777777777777777777774333

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.034  Score=53.29  Aligned_cols=99  Identities=23%  Similarity=0.191  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATA---------------------  176 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~---------------------  176 (399)
                      +.....+..+...+++.+|...|..++...| +..+...++.||+..|+++.|...+..                     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            3456778889999999999999999999999 999999999999999999776554433                     


Q ss_pred             -------------HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          177 -------------ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       177 -------------Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                                   .+..||++..+-+.+|..|...|++++|+..+-..++.|-.
T Consensus       215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence                         23348889999999999999999999999988888887654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.90  E-value=0.0043  Score=44.20  Aligned_cols=42  Identities=24%  Similarity=0.156  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      .+++.+|.+++++++|..|.+.|+.+|+++|++.++...+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            467889999999999999999999999999999987655443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.88  E-value=0.023  Score=57.54  Aligned_cols=129  Identities=16%  Similarity=0.120  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      +..|..-|....++.+...|...+-.||-.+|...++...-..-+++++++.+...|++-|+..|.+..+|...|..-..
T Consensus       404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~  483 (677)
T KOG1915|consen  404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS  483 (677)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence            44556666667777788888888888888888444555555556778888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCcH-H--HHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDE-E--IAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~-~--~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ||+++.|...|.-|+...--+ +  .+...-..+-.....+..+..|+++-.
T Consensus       484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            888888888888887654322 1  122222223344455556666665543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.88  E-value=0.01  Score=64.52  Aligned_cols=90  Identities=8%  Similarity=-0.042  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCcHHHHHHHHHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK--IDFDEEIAAVLKKV  227 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~--ldp~~~~~~~lk~v  227 (399)
                      +...|..+..+|.+.|+++.|...|++..+   .+...|..+..+|...|++++|+..|++.++  +.|+..+...+-..
T Consensus       359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a  435 (697)
T PLN03081        359 DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA  435 (697)
T ss_pred             CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            334444444455555555555555544432   2345666666777777777777777776654  34555443333333


Q ss_pred             hHHHHhHHHHHHHHH
Q 044737          228 EPNALRIEEHRRKYD  242 (399)
Q Consensus       228 ~~~~~k~~e~~~~ye  242 (399)
                      ..+.+.+.+....++
T Consensus       436 ~~~~g~~~~a~~~f~  450 (697)
T PLN03081        436 CRYSGLSEQGWEIFQ  450 (697)
T ss_pred             HhcCCcHHHHHHHHH
Confidence            333333444444333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.88  E-value=0.014  Score=63.47  Aligned_cols=122  Identities=11%  Similarity=0.005  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLN--PSAIMYATRASVYIKMKKPNAAIRDATAALEIN-PDSAKGYKTRGMAHA  196 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~--P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-p~~~~a~~~~g~a~~  196 (399)
                      .|......|.+.|++++|+..|.+.....  |+...|..+..+|.++++++.|.+.+..+++.. +.+...|..+..+|.
T Consensus       292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~  371 (697)
T PLN03081        292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS  371 (697)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence            45566667777777777777777766543  266677777777777777777777777777765 445666777777777


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      +.|++++|...|++..+  |+-..+..+-...-..++..++...+++
T Consensus       372 k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~  416 (697)
T PLN03081        372 KWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFER  416 (697)
T ss_pred             HCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence            77777777777776644  3323333333333344444444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.81  E-value=0.0098  Score=61.58  Aligned_cols=80  Identities=20%  Similarity=0.079  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHH
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY--KTRGM  193 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~--~~~g~  193 (399)
                      +..+|..+...|+.++||+.|++++....     .+.++..++.||+-+.+|++|...+.+.++.+ .|.+++  |-.|.
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            44666677777777777777777664221     46666777777777777777777777766644 344433  33456


Q ss_pred             HHHhcCCH
Q 044737          194 AHAMLGHW  201 (399)
Q Consensus       194 a~~~lg~~  201 (399)
                      |+..+++.
T Consensus       349 c~~~l~~~  356 (468)
T PF10300_consen  349 CLLMLGRE  356 (468)
T ss_pred             HHHhhccc
Confidence            66666666

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.80  E-value=0.0089  Score=49.08  Aligned_cols=92  Identities=17%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKK-----------PNAAIRDATAALEINPDSAKGY  188 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~-----------~~~Ai~d~~~Al~l~p~~~~a~  188 (399)
                      ++..+|..|++-+|++..+..|..++ .   +.++...|.+++++..           .-.++..+.+++.+.|+.+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57789999999999999999999988 3   3667777777766532           3457888888999999888888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      +.+|.-+-....|++++.-.+++|.+.
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            888887777777888888888887654

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=96.78  E-value=0.015  Score=62.69  Aligned_cols=16  Identities=88%  Similarity=1.975  Sum_probs=8.1

Q ss_pred             CCCCCCCCCCCCCCCC
Q 044737          305 FPGGMPGGFPGGMPGG  320 (399)
Q Consensus       305 ~~gg~~gg~~gg~~g~  320 (399)
                      ||+||||||||||||+
T Consensus       620 ~~~~~~~~~~~~~~~~  635 (653)
T PTZ00009        620 MPGGMPGGMPGGMPGG  635 (653)
T ss_pred             CCCCCCCCCCCCCCCC
Confidence            3444555555555544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.76  E-value=0.034  Score=60.00  Aligned_cols=95  Identities=16%  Similarity=0.146  Sum_probs=83.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE  203 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee  203 (399)
                      -...+..++|.+|+...++.++..| ...+..-.|..++++|++.+|...++..-.+.+++...+-.+-.+|..++++++
T Consensus        16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            3456778899999999999999999 777778889999999999999966665556677888889999999999999999


Q ss_pred             HHHHHHHHHhhCCcHH
Q 044737          204 AVHDLHVASKIDFDEE  219 (399)
Q Consensus       204 A~~~l~~Al~ldp~~~  219 (399)
                      |+..|++++..+|...
T Consensus        96 ~~~~Ye~~~~~~P~ee  111 (932)
T KOG2053|consen   96 AVHLYERANQKYPSEE  111 (932)
T ss_pred             HHHHHHHHHhhCCcHH
Confidence            9999999999999953

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.0089  Score=57.25  Aligned_cols=85  Identities=12%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737          127 EAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       127 ~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      .+.+..+|..||++++--.+.+| +...++.+|.||+...+|..|...|++...+.|...+..+..+..++..+.+..|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            34788899999999999999999 99999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 044737          206 HDLHVA  211 (399)
Q Consensus       206 ~~l~~A  211 (399)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            765544

>PRK10941 hypothetical protein; Provisional

Probab=96.59  E-value=0.028  Score=53.86  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      .-+.+.=..+.+.++|+.|+.+.+..+.++| ++.-+.-||.+|.+++.+..|+.|++.-|+..|+.+.+...+..+..
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            3445566778999999999999999999999 99999999999999999999999999999999999988776665543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.58  E-value=0.016  Score=56.78  Aligned_cols=123  Identities=15%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIML-----NP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--------  184 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-----~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--------  184 (399)
                      .+...|++++..+.|+++++.|+.|+++     +|  ...++..++..|..++++++|+-...+|.++--..        
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            3445899999999999999999999998     34  57889999999999999999999999998874322        


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--cH-HH----HHHHHHHhHHHHhHHHHHHHHH
Q 044737          185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF--DE-EI----AAVLKKVEPNALRIEEHRRKYD  242 (399)
Q Consensus       185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp--~~-~~----~~~lk~v~~~~~k~~e~~~~ye  242 (399)
                        .-++|+++.+++.+|..-.|.++++.|.++.-  .| .+    ...+..+.......+...+.|+
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe  270 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE  270 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence              24678899999999999999999999987753  22 22    1234444444444444444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.55  E-value=0.02  Score=49.15  Aligned_cols=62  Identities=18%  Similarity=0.195  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE  179 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~  179 (399)
                      ...+...+..+...|+|++|+..+.+++.++| +-.+|..+-.+|..+|++..|++.|+++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            35566777788899999999999999999999 999999999999999999999999887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.13  Score=48.10  Aligned_cols=102  Identities=17%  Similarity=0.057  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLN-----P--SAIMYATRASVYIKMKKPNAAIRDATAALEIN-----PDS  184 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-----P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-----p~~  184 (399)
                      .+..+...++.+-..++|++|..++.+|++-.     +  -+..|-..+.....+..|.+++..+++|+.+.     |+-
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            34556666777778899999999999999543     2  35667777777788999999999999999874     555


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          185 AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       185 ~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +-.-+-++.=....-+.++|+..|++++.+--.+
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            5555555555667788999999999999876544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=0.015  Score=55.11  Aligned_cols=78  Identities=22%  Similarity=0.301  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV  227 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v  227 (399)
                      ...+..|+=.+|...++|+.|+...++.|.++|.++.-+.-+|.+|..++.+.-|+.++...++.-|++.+...++.-
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            356677788889999999999999999999999999999999999999999999999999999999999877766653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.53  E-value=0.065  Score=59.74  Aligned_cols=98  Identities=9%  Similarity=0.034  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPD-------  183 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~-------  183 (399)
                      +..+...|..+...|++++|+..|.+++.+..       ...++.++|.+++..|++..|...+.+++.+-..       
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            34456778888999999999999999987632       3456778899999999999999999998886221       


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          184 -SAKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       184 -~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                       ....+..+|.++...|++++|...+.+++.+.
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence             12345678888999999999999999988763

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.01  Score=55.34  Aligned_cols=67  Identities=19%  Similarity=0.194  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK  186 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~  186 (399)
                      -+.+-...++..++|-++++++++.|+..| +..+|+.||.++...=+..+|..|+.++|+++|.-..
T Consensus       232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            456788899999999999999999999999 9999999999999999999999999999999996543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.49  E-value=0.0036  Score=57.76  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          162 IKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       162 ~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+.++.+.|.+.|++|+.+-|.|...|+|+|.-..+.|+++.|.+.|++.+++||++
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344556666666666666666666666666666666666666666666666666655

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.43  E-value=0.1  Score=58.19  Aligned_cols=95  Identities=15%  Similarity=0.046  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP--S----AIMYATRASVYIKMKKPNAAIRDATAALEINPDS------AKG  187 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~------~~a  187 (399)
                      .....+..++..|+|++|...+.+++...+  .    ..++..+|.++...|++..|+..+.+++.+....      ..+
T Consensus       454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~  533 (903)
T PRK04841        454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS  533 (903)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence            334578888999999999999999998655  2    3566889999999999999999999999763321      346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          188 YKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       188 ~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      +.++|.++...|++++|...+++++.+
T Consensus       534 ~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        534 LLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            778899999999999999999999886

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.37  E-value=0.0065  Score=39.38  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      +|.++|.+|..+|+|++|+..|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57889999999999999999999966554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.13  Score=48.78  Aligned_cols=97  Identities=19%  Similarity=0.161  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKM----KKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l----~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ....-+++.+..+++-|.....+...++-+ ..+..+|.+|+++    .++..|.-.|+..-.-.|..+..+.-.+.|+.
T Consensus       140 ~Al~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l  218 (299)
T KOG3081|consen  140 AALNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL  218 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence            333445556666666666666665555441 1111223333222    23555666666555544455555555666666


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+++|++|...++.||.-++.+
T Consensus       219 ~~~~~eeAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  219 QLGRYEEAESLLEEALDKDAKD  240 (299)
T ss_pred             HhcCHHHHHHHHHHHHhccCCC
Confidence            6666666666666666665554

>PLN03077 Protein ECB2; Provisional

Probab=96.36  E-value=0.073  Score=59.25  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIML--NPSAIMYATRASVYIKMKKPNAAIRDATAALEINP--DSAKGYKTRGM  193 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p--~~~~a~~~~g~  193 (399)
                      ...|......|.+.|++++|+..|++.++.  .|+...|..+-.+|.+.|.+++|+..++...+..+  .+...|..+..
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            457888889999999999999999998875  45667777777789999999999999999885432  24578889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEP  229 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~  229 (399)
                      +|.+.|++++|...+++. .+.|+..++..|-....
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~  668 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACR  668 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Confidence            999999999999998875 47788766655444443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.31  E-value=0.044  Score=52.79  Aligned_cols=84  Identities=21%  Similarity=0.202  Sum_probs=59.0

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      .....++|......|....+.|+.++|..+|.-|+.+.| +..++...|...-.-++.-+|-.+|.+||.++|.+.+|+.
T Consensus       109 ~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  109 DPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            334455666666666677777777777777777777777 7777777777666666667777777777777777777777


Q ss_pred             HHHHH
Q 044737          190 TRGMA  194 (399)
Q Consensus       190 ~~g~a  194 (399)
                      +|++.
T Consensus       189 nR~RT  193 (472)
T KOG3824|consen  189 NRART  193 (472)
T ss_pred             hhhcc
Confidence            66644

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.30  E-value=0.0078  Score=37.49  Aligned_cols=30  Identities=23%  Similarity=0.242  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 044737          154 YATRASVYIKMKKPNAAIRDATAALEINPD  183 (399)
Q Consensus       154 ~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~  183 (399)
                      ++++|.||.++|++++|+..+++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444555555555555555555555554444

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.28  E-value=0.017  Score=55.52  Aligned_cols=59  Identities=20%  Similarity=0.045  Sum_probs=56.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          161 YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       161 ~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ..+.|+.+.|...+..|+.+.|++++++...|......++.-+|-.+|-+||.++|.|.
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            37889999999999999999999999999999999999999999999999999999884

>smart00028 TPR Tetratricopeptide repeats

Probab=96.27  E-value=0.0067  Score=36.20  Aligned_cols=30  Identities=23%  Similarity=0.387  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 044737          153 MYATRASVYIKMKKPNAAIRDATAALEINP  182 (399)
Q Consensus       153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p  182 (399)
                      +|.++|.+|..+++++.|+..++++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.046  Score=57.13  Aligned_cols=106  Identities=15%  Similarity=0.024  Sum_probs=88.2

Q ss_pred             cCHHhHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737          110 VTDEKREAA-AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEIN  181 (399)
Q Consensus       110 ~~ee~~~~a-~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~  181 (399)
                      +|.|.+.-+ .-+.+.|..+|+..+|..+++.|...++.-|       .+.+..+++.||+++.+.+.|++.+..|=+.+
T Consensus       345 lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  345 LTKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            344444322 4567899999999999999999999999866       37888999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          182 PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       182 p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      |.++-.-+..-.+...-+.-++|+.++.+....-
T Consensus       425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            9998776767777777888899988887776543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.093  Score=48.81  Aligned_cols=101  Identities=18%  Similarity=0.072  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 044737          118 AAEAKAKAMEAISE-GKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-----  184 (399)
Q Consensus       118 a~~~k~~g~~~~~~-g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-----  184 (399)
                      |.-+...|..|-.. .++++||.+|++|-....       ...++...|..-..+++|..||+.|+++....-++     
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            34455666666555 789999999999988754       24566666777778999999999999987765444     


Q ss_pred             -HHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          185 -AKGYK-TRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       185 -~~a~~-~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                       ++.|+ ..|.||+-..+.-.+...+++...++|.-
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence             44444 45677777799999999999999999975

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.23  E-value=0.0066  Score=37.83  Aligned_cols=33  Identities=18%  Similarity=0.121  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+++++|.++..+|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999998863

>PLN03077 Protein ECB2; Provisional

Probab=96.19  E-value=0.084  Score=58.77  Aligned_cols=116  Identities=15%  Similarity=0.103  Sum_probs=82.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEI--NPDSAKGYKTRGMAHAMLGH  200 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--~p~~~~a~~~~g~a~~~lg~  200 (399)
                      ..-..|.+.|++++|...|...   .|+...|..+..+|.+.|++++|+..|++.++.  .|+.. .|..+-.++...|.
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~  604 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGM  604 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcCh
Confidence            3446778889999999988875   338888888999999999999999999987764  45543 45555567888899


Q ss_pred             HHHHHHHHHHHHh---hCCcHHHHHHHHHHhHHHHhHHHHHHHHH
Q 044737          201 WEEAVHDLHVASK---IDFDEEIAAVLKKVEPNALRIEEHRRKYD  242 (399)
Q Consensus       201 ~eeA~~~l~~Al~---ldp~~~~~~~lk~v~~~~~k~~e~~~~ye  242 (399)
                      +++|...|+...+   +.|+-.....+-.+.-+.+++.++...++
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~  649 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN  649 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999888773   35665544444444444455555444443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.11  E-value=0.0072  Score=36.05  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .+|+++|.++..+++++.|+..|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            57899999999999999999999999999885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.04  E-value=0.013  Score=37.97  Aligned_cols=28  Identities=18%  Similarity=0.170  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          153 MYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      +|.++|.+|.++|+|++|+..|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4778889999999999999999886654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.03  E-value=0.073  Score=42.25  Aligned_cols=49  Identities=31%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       170 Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+..+.+++..+|++..+.+.+|.++...|+|++|+..|-.+++.+++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4566777888888888888888888888888888888888888877653

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.98  E-value=0.15  Score=53.00  Aligned_cols=96  Identities=22%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          123 AKAMEAI-SEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       123 ~~g~~~~-~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      ..+..|- -.|+..+|+.+|..|+.+.|   ...++..+|.++.+.|...+|--.+..|+.--|..+.-||.++.++..+
T Consensus       217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml  296 (886)
T KOG4507|consen  217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML  296 (886)
T ss_pred             HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence            4444443 56999999999999999977   6788889999999999998888888899988888888899999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcH
Q 044737          199 GHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~  218 (399)
                      +.|...+..|..+.+.+|.-
T Consensus       297 ~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  297 GEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             hhhhhhhhhhhhhhccCcch
Confidence            99999999999999999874

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.94  E-value=0.079  Score=42.07  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737          137 AIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--AKGYKTRGMAHAMLGHWEEAVHDLH  209 (399)
Q Consensus       137 Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--~~a~~~~g~a~~~lg~~eeA~~~l~  209 (399)
                      .+..+.+++..+| +..+.+.+|.+++..|+|++|++.+-.++..++++  ..+...+=.++..+|.-+.-+..|+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R   82 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence            4677899999999 99999999999999999999999999999999887  3444444445555555444443333

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.82  E-value=0.034  Score=54.68  Aligned_cols=68  Identities=18%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-----KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-----~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ..+|.|++..+-++.+|.+++.++...+.+....+     .++..++.||..++.++.+++.|++|+++..++
T Consensus        83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~  155 (518)
T KOG1941|consen   83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN  155 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence            67888999999999999999999999988865443     678889999999999999999999999986543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.80  E-value=0.02  Score=58.06  Aligned_cols=110  Identities=16%  Similarity=0.103  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH-HH------hCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEA-IM------LNP---SAIMYATRASVYIKMKKPNAAIRDATAALE--------  179 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~A-i~------l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~--------  179 (399)
                      +..+..+.+.+|-.|+|.+|++.+... |.      +.|   ...+|.|+|.++++++.|..++..|.+||+        
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            446677888999999999999987532 22      234   456779999999999999999999999996        


Q ss_pred             -hCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          180 -INP---------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       180 -l~p---------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                       +.|         ..-..+|+.|.+|...|+.-.|.++|.+++..-..+ .+|-.+.++
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence             112         235689999999999999999999999999887766 455555554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.78  E-value=0.43  Score=44.54  Aligned_cols=130  Identities=23%  Similarity=0.177  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----  184 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----  184 (399)
                      +.++-+...||.|--.++|..|=..|-+|-.+.-       .+..|.--+.||-+. ++++|++.++++|++.-+-    
T Consensus        32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~  110 (288)
T KOG1586|consen   32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFT  110 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHH
Confidence            3445555666777777899999999988877632       477888888888655 9999999999999986543    


Q ss_pred             --HHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCcHHH----HH-HHHHH--hHHHHhHHHHHHHHHHHHH
Q 044737          185 --AKGYKTRGMAHA-MLGHWEEAVHDLHVASKIDFDEEI----AA-VLKKV--EPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       185 --~~a~~~~g~a~~-~lg~~eeA~~~l~~Al~ldp~~~~----~~-~lk~v--~~~~~k~~e~~~~ye~l~~  246 (399)
                        ++.+..+|.+|- .+.+++.|+..|++|-+.-..++.    .. .||-.  ...+.++....+.|+.+.+
T Consensus       111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              345566777776 458999999999999877655432    12 33322  2334555555555655544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.74  Score=43.67  Aligned_cols=113  Identities=17%  Similarity=0.150  Sum_probs=90.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH-HH
Q 044737          128 AISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK-KPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWE-EA  204 (399)
Q Consensus       128 ~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~e-eA  204 (399)
                      +++..+-..|+.+-..+|.++| +...|..|=.|+..++ +..+-++.++.+++-+|.+-+.|..|-.+...++++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            3455667899999999999999 8888888888877766 4577899999999999999999999999999999888 77


Q ss_pred             HHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHH
Q 044737          205 VHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRK  240 (399)
Q Consensus       205 ~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~  240 (399)
                      +..++.++..|-.| -++...+.+....+..+....+
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y  169 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAY  169 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence            88889999988776 5666666665555554443333

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.74  E-value=0.22  Score=50.93  Aligned_cols=85  Identities=12%  Similarity=0.006  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 044737          135 DEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH-WEEAVHDLHVAS  212 (399)
Q Consensus       135 ~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~-~eeA~~~l~~Al  212 (399)
                      ..-+..|..|+...+ +..+|.+......+.+.|.+--..|.++|..+|+++..|..-|.-.+..+. .+.|...+.++|
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            455678999999999 999999988887788889999999999999999999999999988888776 899999999999


Q ss_pred             hhCCcHH
Q 044737          213 KIDFDEE  219 (399)
Q Consensus       213 ~ldp~~~  219 (399)
                      +.+|+.+
T Consensus       168 R~npdsp  174 (568)
T KOG2396|consen  168 RFNPDSP  174 (568)
T ss_pred             hcCCCCh
Confidence            9999984

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.67  E-value=0.24  Score=51.39  Aligned_cols=88  Identities=23%  Similarity=0.161  Sum_probs=77.4

Q ss_pred             cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 044737          131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA----KGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       131 ~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~----~a~~~~g~a~~~lg~~eeA~  205 (399)
                      ......|.+.+.......| .+..+...|..+...|+.+.|+..+++++.....+.    -.++.++.+|..+.+|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4567889999999999999 999999999999999999999999999996554443    36888999999999999999


Q ss_pred             HHHHHHHhhCCcH
Q 044737          206 HDLHVASKIDFDE  218 (399)
Q Consensus       206 ~~l~~Al~ldp~~  218 (399)
                      .++.+.++.+.-.
T Consensus       326 ~~f~~L~~~s~WS  338 (468)
T PF10300_consen  326 EYFLRLLKESKWS  338 (468)
T ss_pred             HHHHHHHhccccH
Confidence            9999999977654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.65  E-value=0.19  Score=45.11  Aligned_cols=97  Identities=14%  Similarity=-0.013  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SA----KGY  188 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~----~a~  188 (399)
                      ..+..+|.-|++.|+++.|++.|.++...+-    ....+.++-.+.+-.++|..+....++|-.+-..  +.    +..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            5678899999999999999999999988765    5677888888889999999999998888765322  21    233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      ...|.++...++|..|...|-.++.-.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            445677778899999998887775443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.63  E-value=1  Score=42.50  Aligned_cols=99  Identities=16%  Similarity=0.101  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHH-
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKK--------PNAAIRDATAALEINPDSAK-  186 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~--------~~~Ai~d~~~Al~l~p~~~~-  186 (399)
                      .....+-++++.++|+.|+....+-|++.|    -.-+++-+|.+++..=+        -..|+..+...|..-|++.- 
T Consensus        73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya  152 (254)
T COG4105          73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA  152 (254)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence            556788999999999999999999999999    35667778888776432        35788999999999998721 


Q ss_pred             --------------HH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          187 --------------GY--KTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       187 --------------a~--~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                                    +.  ...|.-|.+.|.|..|+.-++..++--|+.
T Consensus       153 ~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t  200 (254)
T COG4105         153 PDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT  200 (254)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence                          11  224666889999999999999999886665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.57  E-value=0.16  Score=47.03  Aligned_cols=90  Identities=22%  Similarity=0.145  Sum_probs=70.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh------CC--CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCC------CH
Q 044737          127 EAISEGKLDEAIELSTEAIML------NP--SAIMYATRASVYIKMKKP-------NAAIRDATAALEINPD------SA  185 (399)
Q Consensus       127 ~~~~~g~~~~Ai~~y~~Ai~l------~P--~a~~~~nra~a~~~l~~~-------~~Ai~d~~~Al~l~p~------~~  185 (399)
                      .+-....+++||+.|.-||-.      .+  .+.++..+|.+|..+++.       ..|+..|.+|++....      ..
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            455567889999999888854      22  588899999999999984       4566666666665422      25


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      ..+|.+|.+++++|++++|+..|.+++..--
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            7889999999999999999999999987653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.38  E-value=0.65  Score=42.15  Aligned_cols=94  Identities=14%  Similarity=0.091  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGM  193 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~  193 (399)
                      .+.........+.. +.+....+-+.-++ +   ...-..+|.+++..++++.|+..+..++..--|.   .-+-.|++.
T Consensus        56 ~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLAr  134 (207)
T COG2976          56 QYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLAR  134 (207)
T ss_pred             HHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence            33334444444443 44444444444454 2   2333457778889999999999999998654332   346688999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhC
Q 044737          194 AHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      ++..++.+++|+..+.....-+
T Consensus       135 vq~q~~k~D~AL~~L~t~~~~~  156 (207)
T COG2976         135 VQLQQKKADAALKTLDTIKEES  156 (207)
T ss_pred             HHHHhhhHHHHHHHHhcccccc
Confidence            9999999999998877654433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.35  E-value=0.028  Score=51.99  Aligned_cols=60  Identities=23%  Similarity=0.238  Sum_probs=56.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 044737          126 MEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA  185 (399)
Q Consensus       126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~  185 (399)
                      ...++.++++.|.++|.+|+.+.| .+.-|+.+|....+.|++..|.+.|++.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345778999999999999999999 999999999999999999999999999999999874

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.32  E-value=0.37  Score=41.12  Aligned_cols=76  Identities=13%  Similarity=0.104  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHH
Q 044737          150 SAIMYATRASVYIKMKK---PNAAIRDATAALE-INPD-SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVL  224 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~---~~~Ai~d~~~Al~-l~p~-~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~l  224 (399)
                      +....+|+|.|+.+..+   ..+.|..++..++ -.|. .....|.++..|+++++|+.++.++...++.+|+|.....|
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            66777888999887765   4567888888886 4443 35688889999999999999999999999999999643333


Q ss_pred             H
Q 044737          225 K  225 (399)
Q Consensus       225 k  225 (399)
                      +
T Consensus       111 k  111 (149)
T KOG3364|consen  111 K  111 (149)
T ss_pred             H
Confidence            3

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.3  Score=47.81  Aligned_cols=98  Identities=14%  Similarity=0.010  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHH
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-NPDSAK---GYKTRGMAH  195 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-~p~~~~---a~~~~g~a~  195 (399)
                      ....+..++..|++.+|...+.+.+.-.| +..++..--.+|+.+|+...-...+.++|-. |++-+-   ..--++..+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            33456667888999999999999999889 7777777777778888888888888888876 666543   233356677


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ..+|-|++|.+..++|+++++.+
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D  208 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFD  208 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcc
Confidence            78888888888888888888877

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.013  Score=57.25  Aligned_cols=28  Identities=14%  Similarity=0.183  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044737          254 ERERLRRRAEAQAAYEKAKKEEQSSSSE  281 (399)
Q Consensus       254 ~~er~~~~~~A~~~~~~~~k~~~~d~g~  281 (399)
                      +.++|+.+..|++++++++||+.||...
T Consensus        40 ~~ekfkei~~AyevLsd~ekr~~yD~~g   67 (337)
T KOG0712|consen   40 AGEKFKEISQAYEVLSDPEKREIYDQYG   67 (337)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence            4568999999999999999999999554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.11  E-value=0.36  Score=46.47  Aligned_cols=99  Identities=15%  Similarity=0.041  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 044737          120 EAKAKAMEAIS-EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKTRGMA  194 (399)
Q Consensus       120 ~~k~~g~~~~~-~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~~g~a  194 (399)
                      .|...|..-+. .++...|...|+.+++..| +..+|......++.+++.+.|...+++++..-+...   ..|......
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f  116 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF  116 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            34455666555 6777779999999999999 999999999999999999999999999999876654   578888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      -...|+++...+.++++.++-|++
T Consensus       117 E~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen  117 ESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhhh
Confidence            889999999999999999998875

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.03  E-value=0.31  Score=50.00  Aligned_cols=90  Identities=13%  Similarity=-0.033  Sum_probs=55.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SAKGYKTRGMAHAMLG  199 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g~a~~~lg  199 (399)
                      |...++..........+-+.+..-.   ..-+...+|.|..++|+.++||+.+...++.+|.  +...++++-.++..++
T Consensus       230 gE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq  309 (539)
T PF04184_consen  230 GEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQ  309 (539)
T ss_pred             HHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcC
Confidence            3333443333333333434443322   3344456777777888888888888877776664  4557777777888888


Q ss_pred             CHHHHHHHHHHHHhh
Q 044737          200 HWEEAVHDLHVASKI  214 (399)
Q Consensus       200 ~~eeA~~~l~~Al~l  214 (399)
                      .|.++...+.+.-.+
T Consensus       310 ~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  310 AYADVQALLAKYDDI  324 (539)
T ss_pred             CHHHHHHHHHHhccc
Confidence            887777777765433

The molecular function of this protein is uncertain.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.00  E-value=0.19  Score=38.74  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      ..+....++|..+|...+.++||..++++++..+    ...++-.+..+|...|+|.+.+....+=+.+
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999999866    3555566777888899999988877655544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.93  E-value=0.19  Score=42.78  Aligned_cols=74  Identities=15%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          119 AEAKAKAMEAISEG---KLDEAIELSTEAIM-LNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       119 ~~~k~~g~~~~~~g---~~~~Ai~~y~~Ai~-l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      +..++.+.++.+..   +..+-|..++..++ -.|  .-.+.+-+|..|+++++|+.++++++..|+..|+|.++...+-
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            34566777777654   45678899999996 566  7788888999999999999999999999999999988765443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.93  E-value=0.035  Score=56.42  Aligned_cols=79  Identities=13%  Similarity=0.062  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIM-L--------NP----------SAIMYATRASVYIKMKKPNAAIRDATAALE  179 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~-l--------~P----------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~  179 (399)
                      ..|.+.|.++|+.+.|..++.+|.+|++ .        .|          +..+.+|.|..|+.+|++-.|.+.+.+++.
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            3456889999999999999999999996 1        11          468899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHh
Q 044737          180 INPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       180 l~p~~~~a~~~~g~a~~~  197 (399)
                      .--.++..|+|++.|...
T Consensus       364 vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHhcCcHHHHHHHHHHHH
Confidence            999999999999998764

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.89  E-value=0.35  Score=48.17  Aligned_cols=101  Identities=20%  Similarity=0.209  Sum_probs=81.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          126 MEAISEGKLDEAIELSTEAIML---NP------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       126 ~~~~~~g~~~~Ai~~y~~Ai~l---~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ...+..|+|+.||++.......   .+      .+.++...+...+. -++..|..+...++++.|+.+.+-..-+.+|+
T Consensus       196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf  274 (531)
T COG3898         196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALF  274 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence            3457789999999998766543   22      35555656655544 35899999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEEIAAVLKKV  227 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v  227 (399)
                      ..|+..++-..++.+.+.+|...++..+...
T Consensus       275 ~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a  305 (531)
T COG3898         275 RDGNLRKGSKILETAWKAEPHPDIALLYVRA  305 (531)
T ss_pred             hccchhhhhhHHHHHHhcCCChHHHHHHHHh
Confidence            9999999999999999999988776655544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.86  E-value=2.4  Score=37.28  Aligned_cols=108  Identities=15%  Similarity=0.015  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      ....+..........++..++...+.-.--+.| ...+-..-|..++..++|.+|++.++.+..-.|.++-+--.++.|+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            346778888889999999999999888778899 9999999999999999999999999999999998887777788899


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDEEIAAVLK  225 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk  225 (399)
                      +.+++..== .+-..+++..++.....+.+
T Consensus        89 ~~~~D~~Wr-~~A~evle~~~d~~a~~Lv~  117 (160)
T PF09613_consen   89 YALGDPSWR-RYADEVLESGADPDARALVR  117 (160)
T ss_pred             HHcCChHHH-HHHHHHHhcCCChHHHHHHH
Confidence            888876431 12344666666654333333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.63  Score=44.23  Aligned_cols=101  Identities=9%  Similarity=0.050  Sum_probs=84.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCC--CCHHHHHHHHH
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAAL----EINP--DSAKGYKTRGM  193 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al----~l~p--~~~~a~~~~g~  193 (399)
                      ....+.+...+.|.-.+..|.+.|+.+|  ...+...++.+.++.|+...|-..++++-    .++-  ...-.+.+.+.
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            4567788889999999999999999996  99999999999999999999999998543    3332  23446667778


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHHHHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEEIAA  222 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~~~~  222 (399)
                      +|.-.++|.+|...|.+++..|+.+.++.
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~  289 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPRNAVAN  289 (366)
T ss_pred             heecccchHHHHHHHhhccccCCCchhhh
Confidence            88888999999999999999999886543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.75  E-value=0.81  Score=52.16  Aligned_cols=86  Identities=15%  Similarity=-0.052  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          132 GKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       132 g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                      |.-+.-.+.|.+|-+++.....|..++-.|.+..++.+|.+.++..++---...+.|..++..++...+-+.|...+.+|
T Consensus      1511 G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred             CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            33344444555555555444555556666666666666666666655554455556666666666666666666666666


Q ss_pred             HhhCCc
Q 044737          212 SKIDFD  217 (399)
Q Consensus       212 l~ldp~  217 (399)
                      ++.-|.
T Consensus      1591 L~~lPk 1596 (1710)
T KOG1070|consen 1591 LKSLPK 1596 (1710)
T ss_pred             Hhhcch
Confidence            665554

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.13  Score=48.94  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      +.=+.+...++++.|.....+.|.++| ++.-+.-||.+|.+++.+..|+.|++..++..|+.+.+-+.+....
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            444567889999999999999999999 9999999999999999999999999999999999998877776554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.40  E-value=0.096  Score=34.17  Aligned_cols=30  Identities=27%  Similarity=0.213  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      +.++.++|.+|..+|+|.+|+..+.+++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            345666777777777777777777766664

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=94.35  E-value=7.8  Score=42.01  Aligned_cols=13  Identities=15%  Similarity=0.307  Sum_probs=6.6

Q ss_pred             CCcHHHHHHHHHH
Q 044737          381 NPKVAPIIAKMMA  393 (399)
Q Consensus       381 ~p~~~~~~~~l~~  393 (399)
                      |+|+.+.++-|.+
T Consensus       697 DsKtaQnLsIflg  709 (1102)
T KOG1924|consen  697 DSKTAQNLSIFLG  709 (1102)
T ss_pred             chHHHHHHHHHHh
Confidence            5555555555444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.88  E-value=0.82  Score=42.98  Aligned_cols=93  Identities=24%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CH---H
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIML-----NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD---SA---K  186 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-----~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~---~~---~  186 (399)
                      ..+-..+..+-....|.+++.+|++|+.+     .| .+..-.-+|.-.+..-+++.|+..|++++.+--.   ..   .
T Consensus        72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e  151 (308)
T KOG1585|consen   72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE  151 (308)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            33344455555566777777777777766     34 4444455555556777788888888887765322   22   2


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                      .|-..++++.++.+|.+|...+.+-
T Consensus       152 l~gk~sr~lVrl~kf~Eaa~a~lKe  176 (308)
T KOG1585|consen  152 LYGKCSRVLVRLEKFTEAATAFLKE  176 (308)
T ss_pred             HHHHhhhHhhhhHHhhHHHHHHHHh
Confidence            3444556677777887776665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.64  E-value=1.3  Score=45.56  Aligned_cols=85  Identities=16%  Similarity=0.050  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737          133 KLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--AKGYKTRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       133 ~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--~~a~~~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      -..+|.++|.+|++...   ..+.+.......+.+-       .++.....+  +.+-.++|.|..++|+.++|++.++.
T Consensus       215 Ti~Eae~l~rqAvkAgE---~~lg~s~~~~~~g~~~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rd  284 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGE---ASLGKSQFLQHHGHFW-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRD  284 (539)
T ss_pred             CHHHHHHHHHHHHHHHH---Hhhchhhhhhcccchh-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHH
Confidence            46788888998887743   1111111111111111       122222222  34556788899999999999999999


Q ss_pred             HHhhCCcH---HHHHHHHHH
Q 044737          211 ASKIDFDE---EIAAVLKKV  227 (399)
Q Consensus       211 Al~ldp~~---~~~~~lk~v  227 (399)
                      .++..|..   .+.+.|-.+
T Consensus       285 Llke~p~~~~l~IrenLie~  304 (539)
T PF04184_consen  285 LLKEFPNLDNLNIRENLIEA  304 (539)
T ss_pred             HHhhCCccchhhHHHHHHHH
Confidence            99988763   344444443

The molecular function of this protein is uncertain.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.60  E-value=0.44  Score=37.87  Aligned_cols=56  Identities=18%  Similarity=0.237  Sum_probs=34.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          162 IKMKKPNAAIRDATAALEINP---------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       162 ~~l~~~~~Ai~d~~~Al~l~p---------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      ++.++|..|++.+.+.+..-.         ....++.++|.++...|++++|+..++.|+++...
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            345555555555444443311         12346677777778888888888888877776544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.53  E-value=1  Score=44.04  Aligned_cols=99  Identities=15%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------------------CHHHHHHHHHHHHHc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-----------------------------------SAIMYATRASVYIKM  164 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----------------------------------~a~~~~nra~a~~~l  164 (399)
                      .....+..+...|+..+|+..+...+....                                   .+.++..+|.-...+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            344566777778888888888877776100                                   234455555555555


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhhCCcH
Q 044737          165 ------KKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHW-----------------EEAVHDLHVASKIDFDE  218 (399)
Q Consensus       165 ------~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~-----------------eeA~~~l~~Al~ldp~~  218 (399)
                            ..++.++..|.+|++++|.+.++|+..|..+..+=..                 ..|+..|-+|+.+.+..
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence                  6677788999999999999999999988877654222                 23777777777777763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.46  E-value=0.45  Score=45.74  Aligned_cols=61  Identities=26%  Similarity=0.269  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                      ..++...|..|...+.|++|+..|++++.++|-+...|+-+-..+..+|+--.|++.|++.
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            4566677888999999999999999999999999999999999999999977777766543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.41  E-value=3.1  Score=40.54  Aligned_cols=104  Identities=20%  Similarity=0.119  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-C-----
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEI--N-P-----  182 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--~-p-----  182 (399)
                      ..+..+...+..+.+.|.|+.|...+.++..+++     ...+..-.+..+...|+...|+..+...+..  . .     
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            4567788999999999999999999999998764     3566777888889999999999998887771  1 0     


Q ss_pred             --------------------------CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCcHH
Q 044737          183 --------------------------DSAKGYKTRGMAHAML------GHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       183 --------------------------~~~~a~~~~g~a~~~l------g~~eeA~~~l~~Al~ldp~~~  219 (399)
                                                ..+++++.+|.....+      +.+++++..|..|++++|+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence                                      1146777788877777      888999999999999999763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.23  E-value=0.46  Score=37.75  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737          126 MEAISEGKLDEAIELSTEAIMLNP-----S-----AIMYATRASVYIKMKKPNAAIRDATAALEIN  181 (399)
Q Consensus       126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-----~-----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~  181 (399)
                      ....+.++|..|++.+.+.+....     .     ..+..++|.++...|++++|+..+++||++-
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            346788999999999988887744     2     4667889999999999999999999999873

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.20  E-value=2.8  Score=48.10  Aligned_cols=131  Identities=15%  Similarity=0.010  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SAKGYKTRG  192 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g  192 (399)
                      +...-+....-.|-+..++++|.++|+.-++..- ....|...+..+++..+-++|...+.+||+.-|.  +.+.....|
T Consensus      1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred             chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            3345677888899999999999999999999988 8899999999999999999999999999999998  788888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..-++.|+-+.+...|+-.+.-+|.- +.|..+-+..-.+..+.-.|+.|+|.-.
T Consensus      1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred             HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            99999999999999999999999865 6666665555555555555555555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.06  E-value=0.22  Score=32.37  Aligned_cols=30  Identities=30%  Similarity=0.277  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          185 AKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       185 ~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      +.++.++|.+|..+|+|++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            457899999999999999999999998875

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.82  E-value=1.1  Score=43.16  Aligned_cols=65  Identities=17%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      ...++..++.++...++++.++..+++.+.++|-+-.+|.++-.+|...|+...|+..|++..++
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            46777889999999999999999999999999999999999999999999999999999988774

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.80  E-value=1.7  Score=41.43  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=80.2

Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          123 AKAMEAIS----EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       123 ~~g~~~~~----~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      +.|+.+.+    ..++..|.-.|++--...| +..+....|.|++.+++|++|...+..||.-++.++..+.++-.+-..
T Consensus       174 QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~  253 (299)
T KOG3081|consen  174 QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH  253 (299)
T ss_pred             HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            45555443    3568888888988888667 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHH-HHHHhhCCcHH
Q 044737          198 LGHWEEAVHDL-HVASKIDFDEE  219 (399)
Q Consensus       198 lg~~eeA~~~l-~~Al~ldp~~~  219 (399)
                      +|+-.++...+ .+....+|...
T Consensus       254 ~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  254 LGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             hCCChHHHHHHHHHHHhcCCcch
Confidence            99988877665 45555566654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.74  E-value=0.82  Score=34.96  Aligned_cols=31  Identities=29%  Similarity=0.311  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      .|..+..+|..+=+.|+|.+||.+|++||.+
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4566677777777777777777777666554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=92.55  E-value=0.25  Score=49.99  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .++++++.+.+|++++.+++||+.||.
T Consensus        39 ~a~~~f~~i~~Ay~vL~d~~kR~~YD~   65 (391)
T PRK14284         39 EAEKRFKEVSEAYEVLSDAQKRESYDR   65 (391)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            356689999999999999999999996

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.37  E-value=3.2  Score=44.10  Aligned_cols=126  Identities=18%  Similarity=0.217  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIML-NP------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AK  186 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~P------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~  186 (399)
                      +.+|..+-  -+..+++.+-|..|++|++. +|      -..+|...|..|-..++.+.|...+++|++.+-..    +.
T Consensus       349 V~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~  426 (835)
T KOG2047|consen  349 VEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE  426 (835)
T ss_pred             HHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence            44444443  34568899999999999974 66      47899999999999999999999999999987544    57


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc-------H------------HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFD-------E------------EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~-------~------------~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      .|+..|..-....+++.|+..++.|+.+-..       +            .+|.++..+++.+.-+...+..|.+.-
T Consensus       427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            8999999999999999999999999866322       1            134555555666666666666665543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.28  E-value=0.21  Score=32.95  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      ..|.++|.+.....+|+.|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677777777888888888888877765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.26  E-value=1.6  Score=43.71  Aligned_cols=92  Identities=12%  Similarity=-0.042  Sum_probs=71.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHh
Q 044737          127 EAISEGKLDEAIELSTEAIML----NP-SAIMYATRASVYIK---MKKPNAAIRDATA-ALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       127 ~~~~~g~~~~Ai~~y~~Ai~l----~P-~a~~~~nra~a~~~---l~~~~~Ai~d~~~-Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      .|-..++|+.-|.+++..-.+    -+ ...+...+|.|+.+   .|+.+.|++.+.. .....+.++..|..+|.+|..
T Consensus       150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            455667788777777655554    22 56667778888888   8999999999998 555567888999999999764


Q ss_pred             c---------CCHHHHHHHHHHHHhhCCcH
Q 044737          198 L---------GHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       198 l---------g~~eeA~~~l~~Al~ldp~~  218 (399)
                      +         ..++.|+..|.++.+++|+.
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            3         35788999999999999874

>PRK14295 chaperone protein DnaJ; Provisional

Probab=92.24  E-value=0.21  Score=50.55  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .++++++.+.+|++++.++++|..||.
T Consensus        47 ~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295         47 KAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             hHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            356789999999999999999999995

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.10  E-value=0.13  Score=49.99  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=35.6

Q ss_pred             HHHHHHHHHH-----HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhcCC
Q 044737          237 HRRKYDRLRR-----EREERKVERE------------------RLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       237 ~~~~ye~l~~-----~~e~kk~~~e------------------r~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .+++|+.|++     .+++|++||+                  .|+.+..|+++++++++|..||.
T Consensus        15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~   80 (336)
T KOG0713|consen   15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDT   80 (336)
T ss_pred             CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            3567777776     4677777776                  78999999999999999999983

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.01  E-value=5.3  Score=40.11  Aligned_cols=64  Identities=16%  Similarity=0.162  Sum_probs=48.5

Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCC
Q 044737          121 AKAKAMEAIS---EGKLDEAIELSTEAIMLNP--SAIMYATRASVYIK---------MKKPNAAIRDATAALEINPDS  184 (399)
Q Consensus       121 ~k~~g~~~~~---~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~---------l~~~~~Ai~d~~~Al~l~p~~  184 (399)
                      ....|-++-+   .|+.++|+..+..++....  ++..|.-.|.+|-.         ......|+..|.++.+++|+.
T Consensus       182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            3455666667   8999999999999666544  78888888887733         124678999999999998765

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.83  E-value=1.5  Score=47.96  Aligned_cols=98  Identities=18%  Similarity=0.055  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      +....|-.+++.|++++|..+++..-...+ +-..+..+-.||..++++++|+..|++++..+|. -+.++.+=.||.+-
T Consensus        45 a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~  123 (932)
T KOG2053|consen   45 AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVRE  123 (932)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHH
Confidence            444678899999999999955554333444 7888888999999999999999999999999999 88888888889888


Q ss_pred             CCHHHHHHHHHHHHhhCCcH
Q 044737          199 GHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~  218 (399)
                      +.|.+=.+.--+..+.-|.+
T Consensus       124 ~~yk~qQkaa~~LyK~~pk~  143 (932)
T KOG2053|consen  124 KSYKKQQKAALQLYKNFPKR  143 (932)
T ss_pred             HHHHHHHHHHHHHHHhCCcc
Confidence            88876544444444455655

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.78  E-value=6  Score=38.86  Aligned_cols=80  Identities=11%  Similarity=-0.030  Sum_probs=50.2

Q ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737          139 ELSTEAIMLNP-SAIMYATRASVYIKMKK------------PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       139 ~~y~~Ai~l~P-~a~~~~nra~a~~~l~~------------~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      ..|++.++-+| +..+|..+....-.+-.            .+..+..+++||+.+|++...+..+=.+.....+-+...
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34666666777 66666666554433322            344566677777777777766666666666666666666


Q ss_pred             HHHHHHHhhCCcH
Q 044737          206 HDLHVASKIDFDE  218 (399)
Q Consensus       206 ~~l~~Al~ldp~~  218 (399)
                      +-+++++..+|++
T Consensus        86 ~~we~~l~~~~~~   98 (321)
T PF08424_consen   86 KKWEELLFKNPGS   98 (321)
T ss_pred             HHHHHHHHHCCCC
Confidence            6677777777665

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=91.34  E-value=0.27  Score=45.86  Aligned_cols=102  Identities=20%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC---C-C---------HHHHHHHHHHHHHcCCH-HHHHH-HHHHHHH-h-CCCC--HHHH
Q 044737          128 AISEGKLDEAIELSTEAIMLN---P-S---------AIMYATRASVYIKMKKP-NAAIR-DATAALE-I-NPDS--AKGY  188 (399)
Q Consensus       128 ~~~~g~~~~Ai~~y~~Ai~l~---P-~---------a~~~~nra~a~~~l~~~-~~Ai~-d~~~Al~-l-~p~~--~~a~  188 (399)
                      +|..|+|+.|++...-||+.+   | .         +.-...-+...++.|+. +-.+. .+..+.. . -|+-  ++.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            467899999999999999874   2 1         23333444444555552 22221 1222211 0 1333  4556


Q ss_pred             HHHHHHHH---------hcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhH
Q 044737          189 KTRGMAHA---------MLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEP  229 (399)
Q Consensus       189 ~~~g~a~~---------~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~  229 (399)
                      ...|.+++         ..++...|+..|++|+.++|.-.+...++++..
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~  222 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLER  222 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence            66666663         446788999999999999998654444444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.17  E-value=0.35  Score=31.88  Aligned_cols=30  Identities=27%  Similarity=0.312  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEIN  181 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~  181 (399)
                      .+|..+|.+.+...+|..|+.||.+||++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788888888888888999888888763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.94  E-value=7  Score=37.43  Aligned_cols=103  Identities=12%  Similarity=-0.023  Sum_probs=77.9

Q ss_pred             HhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC-----------CHHHHHHHHHHHHHcCCHHHH---HHH
Q 044737          113 EKREAAAEAKAKAMEAISEG-KLDEAIELSTEAIML----NP-----------SAIMYATRASVYIKMKKPNAA---IRD  173 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g-~~~~Ai~~y~~Ai~l----~P-----------~a~~~~nra~a~~~l~~~~~A---i~d  173 (399)
                      .....+..+++.|..+++.+ +|+.|+..+++|+.+    ..           ...++..++.+|+..+.++..   ++.
T Consensus        30 ~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~  109 (278)
T PF08631_consen   30 MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNA  109 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            33566889999999999999 999999999999988    21           256777899999998877543   333


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      .+.+-.-.|+.+..++..=.++...++.+++.+.+.+.+.--
T Consensus       110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            333444457777777666566666889999999988887653

It is also involved in sporulation [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.83  E-value=3.5  Score=41.40  Aligned_cols=93  Identities=18%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASV--YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a--~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      .+...+...+-.|+|+.|...|+- .--+|...++-.||..  -..+|.++.|+++..+|-..-|.-+-++.-.-..++.
T Consensus       122 IhlLeAQaal~eG~~~~Ar~kfeA-Ml~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~  200 (531)
T COG3898         122 IHLLEAQAALLEGDYEDARKKFEA-MLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA  200 (531)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHH-HhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh
Confidence            455677888899999999999975 4456633333344433  3578999999999999999999998888888888999


Q ss_pred             cCCHHHHHHHHHHHHh
Q 044737          198 LGHWEEAVHDLHVASK  213 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~  213 (399)
                      .|+|+.|++.++....
T Consensus       201 ~gdWd~AlkLvd~~~~  216 (531)
T COG3898         201 AGDWDGALKLVDAQRA  216 (531)
T ss_pred             cCChHHHHHHHHHHHH
Confidence            9999999998876543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.79  E-value=10  Score=32.96  Aligned_cols=107  Identities=15%  Similarity=0.047  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+.+.....+...++.++-..+...--+.| ...+...-+..++..++|.+|++.++...+-.+..+-+--.++.|++
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            34566667777778999998888877777889 88888999999999999999999999999988888877777888999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEEIAAVLK  225 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~~~~~lk  225 (399)
                      .+++.+==. .-..++..+++.++..+.+
T Consensus        90 al~Dp~Wr~-~A~~~le~~~~~~a~~Lv~  117 (153)
T TIGR02561        90 AKGDAEWHV-HADEVLARDADADAVALVR  117 (153)
T ss_pred             hcCChHHHH-HHHHHHHhCCCHhHHHHHH
Confidence            999854321 2234455555554333333

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=90.69  E-value=0.15  Score=49.98  Aligned_cols=75  Identities=15%  Similarity=0.034  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..++.+...++.+.|..|+.....+++.++ .+.+|+.|+.+|..+.++++|++++..+....|++......+..+
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~  352 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV  352 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence            445577788899999999999999999888 999999999999999999999999999999999987654444333

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.68  E-value=1.3  Score=44.38  Aligned_cols=93  Identities=18%  Similarity=0.096  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEIN--------PDSAKG  187 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--------p~~~~a  187 (399)
                      .+...|.-|...|+++.|+++|.++-..+-    .+..|.|.-.+-+-+++|........+|...-        --.++.
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl  231 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL  231 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence            456788889999999999999999777766    46777787788888999999888888887651        012567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044737          188 YKTRGMAHAMLGHWEEAVHDLHVAS  212 (399)
Q Consensus       188 ~~~~g~a~~~lg~~eeA~~~l~~Al  212 (399)
                      ++..|.+++.+++|..|...+-.+.
T Consensus       232 ~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  232 KCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8888999999999999999887664

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=90.40  E-value=1.3  Score=45.84  Aligned_cols=89  Identities=19%  Similarity=0.103  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCcH-HHHHHHHH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML---GHWEEAVHDLHVASKIDFDE-EIAAVLKK  226 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l---g~~eeA~~~l~~Al~ldp~~-~~~~~lk~  226 (399)
                      +..+..-+.-.+....+..||.+|.+++...|+....|.+|+.++.+.   ++.-.|+.++..|++++|.. .++-+|.+
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            333344444444456678899999999999999999999999888765   46677999999999999987 55666666


Q ss_pred             HhHHHHhHHHHHH
Q 044737          227 VEPNALRIEEHRR  239 (399)
Q Consensus       227 v~~~~~k~~e~~~  239 (399)
                      +...+.+..++..
T Consensus       454 aL~el~r~~eal~  466 (758)
T KOG1310|consen  454 ALNELTRYLEALS  466 (758)
T ss_pred             HHHHHhhHHHhhh
Confidence            6555555544443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.35  E-value=9.5  Score=41.85  Aligned_cols=64  Identities=19%  Similarity=0.120  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAA----------LEINPD----------SAKGYKTRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~A----------l~l~p~----------~~~a~~~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      -..|++.|.-+-..++.+.|+.+|+++          |.-+|.          +...|.|.|.-+...|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            456788888888888899999998874          333443          356788899888999999999999998


Q ss_pred             HHhh
Q 044737          211 ASKI  214 (399)
Q Consensus       211 Al~l  214 (399)
                      |-..
T Consensus       938 A~D~  941 (1416)
T KOG3617|consen  938 AKDY  941 (1416)
T ss_pred             hhhh
Confidence            8543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=90.27  E-value=21  Score=38.25  Aligned_cols=127  Identities=14%  Similarity=-0.002  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH---HHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP--DSA---KGYKTR  191 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p--~~~---~a~~~~  191 (399)
                      ...|...+...-..|-++.....|++.|.+-= .+.+-.|.|..+-.-.-|+++.+.|++.|.|-+  .--   ..|+..
T Consensus       477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk  556 (835)
T KOG2047|consen  477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK  556 (835)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence            44555556666667888888899999999877 888888888888777778999999999999853  222   244555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcHH---HHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDEE---IAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~---~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      ....+.--+.+.|...|++||+..|...   +.-....+++..+.+.....-|++.
T Consensus       557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera  612 (835)
T KOG2047|consen  557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA  612 (835)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5555666688999999999999988653   2334555556555555555555543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.21  E-value=2.6  Score=47.27  Aligned_cols=96  Identities=14%  Similarity=0.061  Sum_probs=76.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKM----K---KPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l----~---~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      ....+++..+.|+.|+..|.+.-...|    -..+.+..|.+.+..    +   .+.+|+.-+++.- -.|.-+--|+-+
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence            556778899999999999999999998    456777777777643    2   3556666665432 346667788899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |.+|..+++|++-+++|..|++.-|..+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998874

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=90.12  E-value=2.3  Score=44.49  Aligned_cols=95  Identities=17%  Similarity=0.002  Sum_probs=80.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHH------HHHH
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKP-NAAIRDATAALEINPDSAKGYKTR------GMAH  195 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~-~~Ai~d~~~Al~l~p~~~~a~~~~------g~a~  195 (399)
                      +...+...++...|+-....++..+| ++.++.|++.+....+.. ..++.++..+....|++......+      +..+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            45556677888889999999999999 999999999998777765 555666677999999998877777      8888


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ..+++..++..++.+++.+.|.+
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKY  175 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhh
Confidence            89999999999999999999987

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.97  E-value=2.7  Score=45.80  Aligned_cols=127  Identities=13%  Similarity=0.072  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAI----------MLNP-----------SAIMYATRASVYIKMKKPNAAIRDATAA  177 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai----------~l~P-----------~a~~~~nra~a~~~l~~~~~Ai~d~~~A  177 (399)
                      ..+++.|..+-..++...|++.|+++-          .-+|           +..+|.+-|..+-..|+.+.|+..|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            456677777777788888888887653          2233           3567778888888899999999998886


Q ss_pred             HH---------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------hCCcHHHHHHHHHHh--
Q 044737          178 LE---------------------INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK------IDFDEEIAAVLKKVE--  228 (399)
Q Consensus       178 l~---------------------l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~------ldp~~~~~~~lk~v~--  228 (399)
                      -.                     ....+-.|-|.+|+-|...|++.+|+..|.+|..      +...|.....|-.+.  
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            32                     2344556888999999999999999998877644      444443333333321  


Q ss_pred             HHHHhHHHHHHHHHHHH
Q 044737          229 PNALRIEEHRRKYDRLR  245 (399)
Q Consensus       229 ~~~~k~~e~~~~ye~l~  245 (399)
                      ..-.......+||+.++
T Consensus      1019 s~~~d~v~aArYyEe~g 1035 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEELG 1035 (1416)
T ss_pred             cCchhHHHHHHHHHHcc
Confidence            22233445556666665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.89  E-value=1.9  Score=42.45  Aligned_cols=89  Identities=16%  Similarity=0.008  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIML-NP----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ..++--=.++|..|+...-...+.+.|-. |+    ..-+.--.+.++..+|-|.+|.+..++|+++|+.+.-+...++.
T Consensus       138 la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aH  217 (491)
T KOG2610|consen  138 LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAH  217 (491)
T ss_pred             hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHH
Confidence            34445556677888888888888887766 44    23334456777888888999999999999998888666666666


Q ss_pred             HHHhcCCHHHHHHH
Q 044737          194 AHAMLGHWEEAVHD  207 (399)
Q Consensus       194 a~~~lg~~eeA~~~  207 (399)
                      ++...+++.++++.
T Consensus       218 Vlem~~r~Keg~eF  231 (491)
T KOG2610|consen  218 VLEMNGRHKEGKEF  231 (491)
T ss_pred             HHHhcchhhhHHHH
Confidence            66666666665553

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.76  E-value=3.7  Score=42.20  Aligned_cols=94  Identities=20%  Similarity=0.092  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC--------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALE-INPDS--------  184 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~-l~p~~--------  184 (399)
                      +.....+|.....-+.|+.|..+|..|.++.-    .+.+-.|+|..|+..++-+.    +-++++ +.|.+        
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~  442 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQR  442 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHH
Confidence            44455778888888999999999999999866    46666789999999877443    334443 34442        


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                        ..++|.+|...+..+++.+|...+++.++..
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence              3578888999999999999999999999887

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.57  E-value=3.7  Score=41.13  Aligned_cols=73  Identities=18%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             HHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCC------------C---HHHHHHHHHH
Q 044737          145 IMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI--------------NPD------------S---AKGYKTRGMA  194 (399)
Q Consensus       145 i~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--------------~p~------------~---~~a~~~~g~a  194 (399)
                      |..+| ....+..++.++...|++..|...+++||-.              ++.            |   -.++++....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            46789 8999999999999999999998888887532              111            1   2477788888


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCc
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      +.+.|.|..|.+.++-.+.+||+
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999998

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK14286 chaperone protein DnaJ; Provisional

Probab=89.55  E-value=0.36  Score=48.53  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .++++++++.+|+++|+++++|+.||.
T Consensus        42 ~a~~~f~~i~~Ay~vL~d~~kR~~YD~   68 (372)
T PRK14286         42 ESEEKFKEATEAYEILRDPKKRQAYDQ   68 (372)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            356789999999999999999999995

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.11  E-value=1.2  Score=28.88  Aligned_cols=33  Identities=15%  Similarity=0.114  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCcH
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHD--LHVASKIDFDE  218 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~--l~~Al~ldp~~  218 (399)
                      +.|+-+|..+...|++++|++.  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566667777777777777777  44666666643

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.03  E-value=7.1  Score=34.91  Aligned_cols=66  Identities=12%  Similarity=0.119  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      ..+|..+|.-|++.|+++.|++.|.++....-..   ...++++-.+....++|..+...+.+|-.+--
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            4678899999999999999999999987754322   45778888889999999999999998876643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=88.96  E-value=0.86  Score=46.24  Aligned_cols=27  Identities=15%  Similarity=0.192  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      ...++++++.+|++++.++.+|..||.
T Consensus        41 ~a~~~f~~i~~Ay~vL~d~~~r~~yD~   67 (397)
T PRK14281         41 EAEEHFKEVNEAYEVLSNDDKRRRYDQ   67 (397)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            345789999999999999999999995

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.87  E-value=3.1  Score=40.89  Aligned_cols=86  Identities=20%  Similarity=0.069  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          134 LDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEI--NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       134 ~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l--~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                      |..-..+|.-...+.|+...-.||+.+..+.--+..++...+.....  -..+..+|-.+|..+.++|+.++|...|++|
T Consensus       312 W~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrA  391 (415)
T COG4941         312 WPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRA  391 (415)
T ss_pred             hHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence            44444445544455556667789999998888888888887766554  2356677888999999999999999999999


Q ss_pred             HhhCCcHH
Q 044737          212 SKIDFDEE  219 (399)
Q Consensus       212 l~ldp~~~  219 (399)
                      +.+..+..
T Consensus       392 i~La~~~a  399 (415)
T COG4941         392 IALARNAA  399 (415)
T ss_pred             HHhcCChH
Confidence            99998874

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.79  E-value=1.5  Score=41.40  Aligned_cols=61  Identities=15%  Similarity=-0.004  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          137 AIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       137 Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      |+.+|.+|+.+.| +...|+.+|..+...+++=.|+-+|-+++-..-.++.|..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7889999999999 999999999999999999999999999998877778888888888777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=88.40  E-value=16  Score=38.54  Aligned_cols=91  Identities=16%  Similarity=0.156  Sum_probs=72.9

Q ss_pred             HHcCCHHH-HHHHHHHHHHhCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 044737          129 ISEGKLDE-AIELSTEAIMLNP-SAIMYAT--RASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEA  204 (399)
Q Consensus       129 ~~~g~~~~-Ai~~y~~Ai~l~P-~a~~~~n--ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA  204 (399)
                      +..+..+. |+..|...+.+++ +..++..  |+..+..++....++-....++..||+++.++.+++.+....+....+
T Consensus        41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence            44444444 7888888888888 6655333  588888899998889899999999999999999999999988887777


Q ss_pred             HHHHHH-HHhhCCcHH
Q 044737          205 VHDLHV-ASKIDFDEE  219 (399)
Q Consensus       205 ~~~l~~-Al~ldp~~~  219 (399)
                      +..+.. +..+.|++.
T Consensus       121 ~~~~~~~a~~~~~~~~  136 (620)
T COG3914         121 LADISEIAEWLSPDNA  136 (620)
T ss_pred             HHHHHHHHHhcCcchH
Confidence            776655 888899884

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=88.23  E-value=0.98  Score=43.85  Aligned_cols=80  Identities=9%  Similarity=-0.054  Sum_probs=68.0

Q ss_pred             HHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          140 LSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT-RGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       140 ~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~-~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .|.++-...| +..+|...+..-.+.+.|.+--..|.+++..+|.++..|.. .+.-+...++++.|...+.++++++|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3445555567 88899888888888889999999999999999999999977 555677889999999999999999999


Q ss_pred             HH
Q 044737          218 EE  219 (399)
Q Consensus       218 ~~  219 (399)
                      ++
T Consensus       175 ~p  176 (435)
T COG5191         175 SP  176 (435)
T ss_pred             Cc
Confidence            84

>PRK14285 chaperone protein DnaJ; Provisional

Probab=88.04  E-value=0.47  Score=47.59  Aligned_cols=27  Identities=15%  Similarity=0.111  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .++++++++.+|++++.++++|..||.
T Consensus        41 ~a~~~f~~i~~Ay~vL~d~~kr~~yd~   67 (365)
T PRK14285         41 EAESIFKEATEAYEVLIDDNKRAQYDR   67 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence            356789999999999999999999996

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=87.82  E-value=4.7  Score=41.49  Aligned_cols=93  Identities=13%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE  203 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee  203 (399)
                      -......|+.-.|-+....+++..| .......++..+-.+|.|+.|+.++.-+=.+-..-.++..-+-..+..+++|++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            3446778999999999999999999 888888889999999999999988766555545555666667778889999999


Q ss_pred             HHHHHHHHHhhCCc
Q 044737          204 AVHDLHVASKIDFD  217 (399)
Q Consensus       204 A~~~l~~Al~ldp~  217 (399)
                      |.....-.+.-.-+
T Consensus       376 a~s~a~~~l~~eie  389 (831)
T PRK15180        376 ALSTAEMMLSNEIE  389 (831)
T ss_pred             HHHHHHHHhccccC
Confidence            98877766654433

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.68  E-value=6.6  Score=39.56  Aligned_cols=91  Identities=19%  Similarity=0.158  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CHHHH
Q 044737          132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK--PNAAIRDATAALEINPDSAKGYKTRGMAHAMLG----HWEEA  204 (399)
Q Consensus       132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~--~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg----~~eeA  204 (399)
                      .-+++-+.....+|+.+| +..+|+-|..++.+...  |..=++.|++++++||.+-.+|-.|-.+.....    .+.+-
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            356777888999999999 99999999999987764  688899999999999999888866655544322    36677


Q ss_pred             HHHHHHHHhhCCcH-HHHH
Q 044737          205 VHDLHVASKIDFDE-EIAA  222 (399)
Q Consensus       205 ~~~l~~Al~ldp~~-~~~~  222 (399)
                      +....+++.-++.| .++.
T Consensus       169 l~ftt~~I~~nfSNYsaWh  187 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYSAWH  187 (421)
T ss_pred             HHHHHHHHhccchhhhHHH
Confidence            78888888888887 4443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.65  E-value=19  Score=34.32  Aligned_cols=95  Identities=13%  Similarity=-0.001  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHH
Q 044737          120 EAKAKAMEAIS----EGKLDEAIELSTEAIMLNP-S-AIMYATRASVYIKM----K---KPNAAIRDATAALEINPDSAK  186 (399)
Q Consensus       120 ~~k~~g~~~~~----~g~~~~Ai~~y~~Ai~l~P-~-a~~~~nra~a~~~l----~---~~~~Ai~d~~~Al~l~p~~~~  186 (399)
                      .....|..++.    ..++.+|+.+|.+|....- . ..+..+++.+|..-    +   ....|+..+.+|....  ++.
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~  188 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD  188 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence            44456666655    4478888888888877754 4 45566677776553    1   2236777777777765  677


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 044737          187 GYKTRGMAHAM----LGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       187 a~~~~g~a~~~----lg~~eeA~~~l~~Al~ldp  216 (399)
                      +.+++|.+|..    ..++.+|+..|.+|.+...
T Consensus       189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            77788877653    3477888888888877766

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.64  E-value=2.9  Score=38.70  Aligned_cols=78  Identities=18%  Similarity=0.083  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC--C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737          116 EAAAEAKAKAMEAISEGK-------LDEAIELSTEAIMLN--P-----SAIMYATRASVYIKMKKPNAAIRDATAALEIN  181 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~-------~~~Ai~~y~~Ai~l~--P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~  181 (399)
                      ..|..+...|..+-..++       +..|+..|.+|+...  |     ...+.+-+|..+.++|++++|++++.++|...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            455666666776666666       556777777777653  2     37888899999999999999999999999865


Q ss_pred             CCCH-HHHHHHHH
Q 044737          182 PDSA-KGYKTRGM  193 (399)
Q Consensus       182 p~~~-~a~~~~g~  193 (399)
                      -.+. ..+..+|+
T Consensus       196 ~~s~~~~l~~~AR  208 (214)
T PF09986_consen  196 KASKEPKLKDMAR  208 (214)
T ss_pred             CCCCcHHHHHHHH
Confidence            4333 24444443

>PRK14277 chaperone protein DnaJ; Provisional

Probab=87.47  E-value=0.66  Score=46.89  Aligned_cols=27  Identities=15%  Similarity=0.204  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .++++++++.+|+++|.++.+|..||.
T Consensus        43 ~a~~~f~~i~~Ay~vL~d~~kr~~yD~   69 (386)
T PRK14277         43 EAEQKFKEINEAYEILSDPQKRAQYDQ   69 (386)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            355789999999999999999999996

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.43  E-value=5.6  Score=30.51  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAI  145 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai  145 (399)
                      ..+..+|..+=+.|+|.+|+.+|.+||
T Consensus         7 ~~l~~~Ave~D~~g~y~eAl~~Y~~ai   33 (77)
T cd02683           7 KEVLKRAVELDQEGRFQEALVCYQEGI   33 (77)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            334444444444444444444444433

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.15  E-value=3.4  Score=43.82  Aligned_cols=69  Identities=20%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINP------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +.++-|-|.-+++..+|..+++.|...+..-|      ++++....++.||..+.+.+.|++.++.|-+.||.+.
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~  428 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP  428 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence            44555778888999999999999999988655      3478889999999999999999999999999999874

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.06  E-value=13  Score=38.05  Aligned_cols=49  Identities=16%  Similarity=0.163  Sum_probs=39.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737          161 YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       161 ~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      ++..|+|..|.-.+.=..++.| ++.+|..+|.++....+|++|..++..
T Consensus       472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4567888888888888888888 888888888888888888888776653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK14298 chaperone protein DnaJ; Provisional

Probab=86.70  E-value=0.88  Score=45.82  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .++++++.+.+|+++|.++.+|+.||.
T Consensus        42 ~~~~~f~~i~~Ay~vL~d~~kR~~YD~   68 (377)
T PRK14298         42 DAEEKFKEISEAYAVLSDAEKRAQYDR   68 (377)
T ss_pred             hHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence            345788999999999999999999996

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.50  E-value=5.1  Score=38.58  Aligned_cols=63  Identities=24%  Similarity=0.244  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      +..+...+..+...++++.++.++++-|.++| +-.+|..+-.+|++.|+...|+..|.+.-++
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45667888899999999999999999999999 9999999999999999999999999876654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=86.44  E-value=5.7  Score=40.62  Aligned_cols=59  Identities=19%  Similarity=0.098  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATA  176 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~  176 (399)
                      .......|.-+|..|+|.+++-......++.|+..+|.-+|.|.+..++|.+|...+..
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            45566788889999999999999999999999999999999999999999999987653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=86.32  E-value=1.1  Score=49.02  Aligned_cols=6  Identities=17%  Similarity=0.650  Sum_probs=2.4

Q ss_pred             CCCCcc
Q 044737           21 SILADP   26 (399)
Q Consensus        21 ~~l~~~   26 (399)
                      +++++|
T Consensus       786 em~r~p  791 (1282)
T KOG0921|consen  786 EMFRTP  791 (1282)
T ss_pred             hhhcCc
Confidence            344443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.25  E-value=11  Score=28.72  Aligned_cols=17  Identities=24%  Similarity=0.059  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHhhCCcHH
Q 044737          203 EAVHDLHVASKIDFDEE  219 (399)
Q Consensus       203 eA~~~l~~Al~ldp~~~  219 (399)
                      +|+..|.++++..||+.
T Consensus        31 ~aIe~L~q~~~~~pD~~   47 (75)
T cd02682          31 KAIEVLSQIVKNYPDSP   47 (75)
T ss_pred             HHHHHHHHHHHhCCChH
Confidence            44445666677778775

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=86.14  E-value=0.67  Score=30.77  Aligned_cols=33  Identities=21%  Similarity=0.572  Sum_probs=24.4

Q ss_pred             chhccCCCHHHHhhcC----CHHHHHHHHHHhh-ChHHHHH
Q 044737          342 DFSKILNDPELMAAFS----DPEVMAALQDVMK-NPANLAQ  377 (399)
Q Consensus       342 ~~~~~~~dpe~~~~~~----dp~~~~~~~~~~~-np~~~~~  377 (399)
                      .+..++.||.++++++    ||.++..+   ++ ||+.+..
T Consensus         3 ~~~~~l~~P~~~~~l~~~~~nP~~~~~~---~~~nP~~~~~   40 (41)
T smart00727        3 EMALRLQNPQVQSLLQDMQQNPDMLAQM---LQENPQLLQL   40 (41)
T ss_pred             HHHHHHcCHHHHHHHHHHHHCHHHHHHH---HHhCHHhHhh
Confidence            4556788999999888    99976553   44 9986543

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.05  E-value=5.1  Score=37.20  Aligned_cols=63  Identities=16%  Similarity=0.169  Sum_probs=56.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK  186 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~  186 (399)
                      -...+++.+...+||.....-++.+| ++.....+-..|+-.|+|++|+..|+-+-.+.|.+.+
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            34568889999999999999999999 8888888888888999999999999999999998754

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.99  E-value=2.5  Score=36.41  Aligned_cols=47  Identities=17%  Similarity=0.236  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK  165 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~  165 (399)
                      .....++..++..|+|..|+.+.+.++..+| +..+..-++.+|.+++
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            4566777777788888888888887777777 7777777777766654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.93  E-value=0.97  Score=26.79  Aligned_cols=22  Identities=23%  Similarity=0.006  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDL  208 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l  208 (399)
                      +++.+|.++..+|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            4455555666666666655544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.12  E-value=6.1  Score=36.13  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPD----SAKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~----~~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      .+.+.+.+|..|. ..+..+|+..+.++|++...    ++..+..++.++..+++++.|-
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            7888888888776 46788999999999988643    4788888999999999988874

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=84.85  E-value=1.8  Score=47.62  Aligned_cols=9  Identities=11%  Similarity=0.076  Sum_probs=4.8

Q ss_pred             HHHhhcCCC
Q 044737          272 KKEEQSSSS  280 (399)
Q Consensus       272 ~k~~~~d~g  280 (399)
                      -|.++||+|
T Consensus      1166 PKmaryDnG 1174 (1282)
T KOG0921|consen 1166 PKMARYDNG 1174 (1282)
T ss_pred             cccccccCC
Confidence            345556655

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.61  E-value=2.8  Score=31.13  Aligned_cols=32  Identities=44%  Similarity=0.481  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      +.|..+..+|..+=+.|+|++|+.+|++||..
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45666777777777777888887777776654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=84.49  E-value=15  Score=36.07  Aligned_cols=81  Identities=11%  Similarity=-0.007  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHH
Q 044737          134 LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA---MLGHWEEAVHDLH  209 (399)
Q Consensus       134 ~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~---~lg~~eeA~~~l~  209 (399)
                      .+..+..|.+||+.+| +..++..+-.++.++-..+...+-.++++..+|.+...|..+-....   ..-.+......|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            3566888999999999 98888888888888888899999999999999999876655433222   2335777777777


Q ss_pred             HHHhh
Q 044737          210 VASKI  214 (399)
Q Consensus       210 ~Al~l  214 (399)
                      +++..
T Consensus       127 ~~l~~  131 (321)
T PF08424_consen  127 KCLRA  131 (321)
T ss_pred             HHHHH
Confidence            77654

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.27  E-value=9.1  Score=29.00  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      ..+..+..+|...=..|+|++|+.+|..||..
T Consensus         4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   35 (75)
T cd02678           4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY   35 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44556666666666666666666666655543

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=84.03  E-value=13  Score=31.30  Aligned_cols=102  Identities=20%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHH----HHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP----------------SAIMYATRASVYIKMKKPNAAIRDATA----ALE  179 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----------------~a~~~~nra~a~~~l~~~~~Ai~d~~~----Al~  179 (399)
                      .+-..|+.+++.+++-.+|-+|++|+.+.-                ......|+|.-+...|+.+-.+++++-    ++.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999997621                245567899999999999988888764    456


Q ss_pred             hCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737          180 INPDSAKGYKTRGMA-HAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV  227 (399)
Q Consensus       180 l~p~~~~a~~~~g~a-~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v  227 (399)
                      +-|..+..-+   .+ ...+|--..|+-+   -++..|+..+++.++.+
T Consensus        83 LiPQCp~~~C---~afi~sLGCCk~ALl~---F~KRHPNP~iA~~vq~i  125 (140)
T PF10952_consen   83 LIPQCPNTEC---EAFIDSLGCCKKALLD---FMKRHPNPEIARLVQHI  125 (140)
T ss_pred             hccCCCCcch---HHHHHhhhccHHHHHH---HHHhCCCHHHHHHHHhc
Confidence            6666442111   11 2244554555444   35678888766655543

>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]

Probab=84.01  E-value=27  Score=35.91  Aligned_cols=86  Identities=14%  Similarity=0.095  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHh
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM--AHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVE  228 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~--a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~  228 (399)
                      ...+..|..+.+.- +-..|+..|..||..+|.-+.-.+..-.  +....++----+..|+..+..||...+ .+--.|.
T Consensus       313 vetH~~RV~AmlNd-rrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAa-qmk~qV~  390 (615)
T KOG3540|consen  313 VETHEARVEAMLND-RRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAA-QMKSQVM  390 (615)
T ss_pred             HHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHH
Confidence            34455555555432 3478999999999999988753333222  333444555578889999999998642 3333445


Q ss_pred             HHHHhHHHHH
Q 044737          229 PNALRIEEHR  238 (399)
Q Consensus       229 ~~~~k~~e~~  238 (399)
                      .++.-|+++.
T Consensus       391 thLrvIeeR~  400 (615)
T KOG3540|consen  391 THLRVIEERI  400 (615)
T ss_pred             HHHHHHHHHh
Confidence            5555555544

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=84.01  E-value=3.9  Score=41.44  Aligned_cols=98  Identities=13%  Similarity=0.075  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEA-------IMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~A-------i~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      .+.-....+.-.|||..|++.+.-.       ....|  ....|+..|-||+.+++|..|++.+..+|-.--.....+..
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~  203 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ  203 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            4445666777889999999886421       11223  67888999999999999999999998877532111111111


Q ss_pred             HHHHH-HhcCCHHHHHHHHHHHHhhCCc
Q 044737          191 RGMAH-AMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       191 ~g~a~-~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      +..-+ .-.+..+.....+.-++.+.|.
T Consensus       204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  204 RSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            11111 2235566677777777888884

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=84.00  E-value=9.8  Score=43.53  Aligned_cols=99  Identities=18%  Similarity=0.212  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML-------NP--SAIMYATRASVYIKMKKPNAAIRDATAALEI-------  180 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-------~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-------  180 (399)
                      .+..++..+..+...+++++|+..-.+|.-+       ++  ....|.+++...+..++...|+..+.+++.+       
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence            3456677888899999999999987776643       33  7899999999999999999999999998876       


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          181 -NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       181 -~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                       .|.-+....+++..+..+++++.|+..++.|+++.
T Consensus      1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence             35556667788888999999999999999999865

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=83.84  E-value=1.6  Score=42.46  Aligned_cols=73  Identities=12%  Similarity=0.071  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYAT-RASVYIKMKKPNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~n-ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      ..-|..-++-..+.+-|.+--..|.+++..+| ++.+|.- -+.-|.-.++++.|...+.++|++||++++.|+.
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            34566666667777888999999999999999 9998876 3444667889999999999999999999887643

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.81  E-value=7.8  Score=36.96  Aligned_cols=86  Identities=14%  Similarity=0.211  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737          133 KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPN-AAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       133 ~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~-~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      +..+-++.+++.+.-+| +..+|.-|-...-.++++. .-+..+..+|..+..+-.+|..|--+.+..+.|+.-+.....
T Consensus        93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~  172 (318)
T KOG0530|consen   93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE  172 (318)
T ss_pred             HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            46677888999999999 9999988888888889888 889999999999999999999999999999999999999999


Q ss_pred             HHhhCCcH
Q 044737          211 ASKIDFDE  218 (399)
Q Consensus       211 Al~ldp~~  218 (399)
                      .++.|--|
T Consensus       173 Lle~Di~N  180 (318)
T KOG0530|consen  173 LLEEDIRN  180 (318)
T ss_pred             HHHHhhhc
Confidence            99988544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=83.66  E-value=25  Score=29.58  Aligned_cols=63  Identities=17%  Similarity=0.150  Sum_probs=45.5

Q ss_pred             HHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          152 IMYATRASVY--IKMKKPNAAIRDATAALEINPDS------------AKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       152 ~~~~nra~a~--~~l~~~~~Ai~d~~~Al~l~p~~------------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      ..|..++.+-  +.-+-|++|...|.+|+++.-+-            +-+|-.++.++..||+|++++....++|..
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3455554443  45578999999999999875332            346777889999999999999888888754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.46  E-value=33  Score=34.74  Aligned_cols=113  Identities=18%  Similarity=0.160  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHcCCHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCH
Q 044737          120 EAKAKAMEAISEGKLD-EAIELSTEAIMLNP-SAIMYATRASVYIKM------------KKPNAAIRDATAALEINPDSA  185 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~-~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l------------~~~~~Ai~d~~~Al~l~p~~~  185 (399)
                      ....+-...-+.+.|+ +++.+=.+.+..|| ...+|+-|=.++...            .-+++-+.....||+.+|++-
T Consensus        30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY  109 (421)
T KOG0529|consen   30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY  109 (421)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence            3344445555667775 57777777778899 666666554444322            234555667788999999999


Q ss_pred             HHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHH
Q 044737          186 KGYKTRGMAHAMLG--HWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNAL  232 (399)
Q Consensus       186 ~a~~~~g~a~~~lg--~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~  232 (399)
                      -+|+.|..++....  +|..=++.+.+++++||.| ..+...+-|.....
T Consensus       110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~  159 (421)
T KOG0529|consen  110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE  159 (421)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence            99999999988665  4788899999999999987 55555555544333

>PRK10767 chaperone protein DnaJ; Provisional

Probab=82.74  E-value=1.9  Score=43.30  Aligned_cols=27  Identities=15%  Similarity=0.202  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737          254 ERERLRRRAEAQAAYEKAKKEEQSSSS  280 (399)
Q Consensus       254 ~~er~~~~~~A~~~~~~~~k~~~~d~g  280 (399)
                      ++++++++.+|++++.++.+|..||.-
T Consensus        43 a~~~f~~i~~Ay~~L~d~~~r~~yd~~   69 (371)
T PRK10767         43 AEEKFKEIKEAYEVLSDPQKRAAYDQY   69 (371)
T ss_pred             HHHHHHHHHHHHHHhcchhhhhHhhhc
Confidence            557899999999999999999999963

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=82.71  E-value=18  Score=31.91  Aligned_cols=74  Identities=19%  Similarity=0.154  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVL  224 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~l  224 (399)
                      ...+..+..+-+..++...+...+...--+.|..+..-..-|..|...|+|.+|+..|+.+..-.|.......|
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL   83 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL   83 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence            34555666677788899998888888888999999999999999999999999999999998888877543333

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=82.67  E-value=7.8  Score=40.07  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHH
Q 044737          128 AISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       128 ~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~-~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      .-+.+.|.+--..|.+++.++| ++.+|.--|.-.+..+. .+.|...+.++|+.+|++++.|.
T Consensus       115 ~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  115 CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            3344458888999999999999 99999988887777775 89999999999999999998765

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.61  E-value=1.7  Score=25.74  Aligned_cols=24  Identities=17%  Similarity=0.061  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 044737          152 IMYATRASVYIKMKKPNAAIRDAT  175 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~  175 (399)
                      .+++++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356677777777777777776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=82.58  E-value=13  Score=27.96  Aligned_cols=32  Identities=38%  Similarity=0.434  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      ..|..+..+|..+=..|+|++|+.+|..|++.
T Consensus         6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~   37 (77)
T smart00745        6 SKAKELISKALKADEAGDYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34455555555555566666666666555443

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=82.45  E-value=37  Score=33.61  Aligned_cols=89  Identities=22%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CC
Q 044737          127 EAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-----------------------NP  182 (399)
Q Consensus       127 ~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-----------------------~p  182 (399)
                      .+-+..+..+-|.....|+++|| -+.+|..+|.--.  --..+|.+.+.+||+.                       ..
T Consensus       193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRD  270 (556)
T KOG3807|consen  193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRD  270 (556)
T ss_pred             HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcc
Confidence            34566788888999999999999 8888877764321  1123333333333332                       12


Q ss_pred             CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          183 DSAKGY--KTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       183 ~~~~a~--~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .++..|  .|++.|-+++|+..+|++.++...+--|-
T Consensus       271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl  307 (556)
T KOG3807|consen  271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL  307 (556)
T ss_pred             cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence            233334  45788899999999999999988776663

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=82.42  E-value=57  Score=36.21  Aligned_cols=97  Identities=23%  Similarity=0.146  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP----------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----  184 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----  184 (399)
                      .-....+..+....+|.+|-.+..++-..-+          .+.+..-+|.+.+..++++.|++.++.++..-|..    
T Consensus       416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~  495 (894)
T COG2909         416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS  495 (894)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence            3445677888899999999988887776533          35777788999999999999999999999987754    


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          185 -AKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       185 -~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                       +.++...|.++.-+|++++|......+.++.
T Consensus       496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         496 RIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence             4688889999999999999999999998874

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=82.12  E-value=1.3  Score=45.33  Aligned_cols=25  Identities=12%  Similarity=0.179  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737          256 ERLRRRAEAQAAYEKAKKEEQSSSS  280 (399)
Q Consensus       256 er~~~~~~A~~~~~~~~k~~~~d~g  280 (399)
                      ++++++.+|+++|++++||..||..
T Consensus        65 e~F~~i~~AYevLsD~~kR~~YD~~   89 (421)
T PTZ00037         65 EKFKEISRAYEVLSDPEKRKIYDEY   89 (421)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhhh
Confidence            6899999999999999999999963

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.01  E-value=5  Score=27.28  Aligned_cols=25  Identities=20%  Similarity=0.037  Sum_probs=18.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASK  213 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~  213 (399)
                      +.+|.+|..+|+++.|...++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4577777788888888777777774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK14296 chaperone protein DnaJ; Provisional

Probab=81.75  E-value=1.1  Score=45.01  Aligned_cols=27  Identities=15%  Similarity=0.142  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .++++|+++.+|+++|++++||..||.
T Consensus        41 ~a~~~F~~i~~AyevLsD~~KR~~YD~   67 (372)
T PRK14296         41 DAHDKMVEINEAADVLLDKDKRKQYDQ   67 (372)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence            356799999999999999999999996

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=81.45  E-value=2.7  Score=42.42  Aligned_cols=56  Identities=25%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAAL  178 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al  178 (399)
                      .....|++.++.+.|+.+..+.|.+|| ...-+.++|.|+..|.+|.+|.+.+--|.
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999 99999999999999999999988776554

>COG4907 Predicted membrane protein [Function unknown]

Probab=81.33  E-value=3.4  Score=42.01  Aligned_cols=46  Identities=17%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          166 KPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       166 ~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                      .|..=+.++.+.-+..|.+.+.|-..-.--..||--++.++.++++
T Consensus       490 aFKnfLsd~s~lke~~pesI~~W~~ylVYatALGV~dkVvkam~~~  535 (595)
T COG4907         490 AFKNFLSDYSQLKEAKPESIHLWEQYLVYATALGVSDKVVKAMRKA  535 (595)
T ss_pred             HHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhccHHHHHHHHHHh
Confidence            3444455566666666666655544332233455555555555544

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=81.13  E-value=3  Score=39.66  Aligned_cols=108  Identities=15%  Similarity=0.039  Sum_probs=72.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCC---CC---HHHH
Q 044737          126 MEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIK----------MKKPNAAIRDATAALEINP---DS---AKGY  188 (399)
Q Consensus       126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~----------l~~~~~Ai~d~~~Al~l~p---~~---~~a~  188 (399)
                      .+++..++.-.|+.+|.+.+.-.| +..+....+.|.-+          .-....|.+.++.||-+--   +.   .-.-
T Consensus         3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~   82 (368)
T COG5091           3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVN   82 (368)
T ss_pred             cchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeeh
Confidence            345666777788888888887777 54433333333222          2345678888888887632   11   2245


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHHHHh
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALR  233 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~~~k  233 (399)
                      ++++.+|+.+.+|+-|..+|.+|+.+--++....|--++...+.+
T Consensus        83 ~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~  127 (368)
T COG5091          83 FRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNK  127 (368)
T ss_pred             hhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhH
Confidence            788999999999999999999999996665544444444444443

>PRK14287 chaperone protein DnaJ; Provisional

Probab=81.11  E-value=1.8  Score=43.50  Aligned_cols=27  Identities=11%  Similarity=0.213  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .++++++++.+|+++++++++|+.||.
T Consensus        41 ~~~~~f~~i~~Ay~~L~d~~kR~~YD~   67 (371)
T PRK14287         41 DAEDKFKEVKEAYDTLSDPQKKAHYDQ   67 (371)
T ss_pred             hHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence            355789999999999999999999996

>PRK14278 chaperone protein DnaJ; Provisional

Probab=80.86  E-value=1.8  Score=43.65  Aligned_cols=28  Identities=11%  Similarity=0.130  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSSS  280 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~g  280 (399)
                      .+.++++.+.+|+++|.++++|..||..
T Consensus        40 ~a~~~f~~i~~Ay~vL~d~~~r~~YD~~   67 (378)
T PRK14278         40 EAQEKFKEISVAYEVLSDPEKRRIVDLG   67 (378)
T ss_pred             HHHHHHHHHHHHHHHhchhhhhhhhhcc
Confidence            3567899999999999999999999964

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.48  E-value=3.3  Score=31.66  Aligned_cols=32  Identities=41%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      ..+..+..+|...=..|+|++|+.+|..||++
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~   35 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence            45555666666666666777777777666655

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=80.47  E-value=16  Score=35.34  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHH-HHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI-AAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       170 Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~-~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +.--+-+.|--+.++..+|.-.|.++..+++....+.++-+-.=|||=... ...++.+..++++++.+|-.|.-+.+
T Consensus        91 ~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkk  168 (366)
T KOG1118|consen   91 VMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKK  168 (366)
T ss_pred             HHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            344455678888999999999999999999999999998888888875433 55778888888888887776654443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=80.41  E-value=29  Score=28.63  Aligned_cols=62  Identities=13%  Similarity=0.065  Sum_probs=48.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCcH
Q 044737          157 RASVYIKMKKPNAAIRDATAALEINPDSAK---GYKTRGMAHAMLG-----------HWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       157 ra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~---a~~~~g~a~~~lg-----------~~eeA~~~l~~Al~ldp~~  218 (399)
                      +|..++..|++-+|++..+..|..++++..   .+..-|.++..+.           .+-.|+++|.++..+.|+.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence            577889999999999999999999988774   3444566665443           2345888899999998887

>PRK14288 chaperone protein DnaJ; Provisional

Probab=80.37  E-value=1.3  Score=44.41  Aligned_cols=27  Identities=19%  Similarity=0.172  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      +++++++.+.+|+++|.+++||..||.
T Consensus        41 ~a~~~f~~i~~AYevLsd~~kR~~YD~   67 (369)
T PRK14288         41 EAEEKFKLINEAYGVLSDEKKRALYDR   67 (369)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            356789999999999999999999996

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.35  E-value=4.2  Score=31.18  Aligned_cols=31  Identities=29%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      .|..+..+|..+=+.|+|.+|+.+|.+||.+
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4556666777777777777777777776655

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=80.28  E-value=1.2  Score=45.24  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      .+.++++++.+|+++|.+++||+.||.
T Consensus        47 ~a~~~f~~i~~Ay~vLsD~~KR~~YD~   73 (392)
T PRK14279         47 AAEERFKAVSEAHDVLSDPAKRKEYDE   73 (392)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            356789999999999999999999996

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.23  E-value=17  Score=37.18  Aligned_cols=106  Identities=18%  Similarity=0.181  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------HHHHHHHHHHHH-------HcCCH-HHHHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----------AIMYATRASVYI-------KMKKP-NAAIRDA  174 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----------a~~~~nra~a~~-------~l~~~-~~Ai~d~  174 (399)
                      .+.......+.|..++..|+|.+|+..|...|..-| .          ..-+..++.=|+       ..+.. ...+++-
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            345556677789999999999999999999998744 1          111111221121       11111 1111122


Q ss_pred             HHHHH---------hCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          175 TAALE---------INPDSAKGYKTRGMA-HAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       175 ~~Al~---------l~p~~~~a~~~~g~a-~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+.++         |.|.+...-++.|.. .+++++|..|....++.|++.|...
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~  334 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE  334 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence            22222         233333223333322 3477888888888888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	399
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		1e-07
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-07
1wao_1	477	Pp5 Structure Length = 477		2e-07
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		1e-06
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-06
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		1e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		1e-05
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-04
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-04
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		2e-04

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 134 LDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
            + AI+  ++AI LNPS AI Y  R+  Y++ +    A+ DAT A+E++    KGY  R 
Sbjct: 29  YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88
Query: 193 MAHAMLGHWEEAVHDLHVASKI 214
            ++  LG +  A+ D     K+
Sbjct: 89  ASNMALGKFRAALRDYETVVKV 110

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 135 DEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193
           + AI+  ++AI LNPS AI Y  R+  Y++ +    A+ DAT A+E++    KGY  R  
Sbjct: 23  ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82
Query: 194 AHAMLGHWEEAVHDLHVASKI 214
           ++  LG +  A+ D     K+
Sbjct: 83  SNMALGKFRAALRDYETVVKV 103

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
           +S G +D+A++  +EAI L+P + ++Y+ R++ Y K      A  D    +++ PD  KG
Sbjct: 15  LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 74
Query: 188 YKTRGMAHAMLGHWEEA 204
           Y  +  A   L  +EEA
Sbjct: 75  YSRKAAALEFLNRFEEA 91

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 133 KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
           K  EA      AI  NP  A+ Y  RA  Y+KM++P  A+ D   ALE++  S K +   
Sbjct: 24  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 192 GMAHAMLGHWEEAVHDLHVA------SKIDFDEEIAAVLKKVEPNALRI 234
           G     +  ++EA+ +L  A       +++F ++I        P+ALRI
Sbjct: 84  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI--------PSALRI 124

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 133 KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
           K  EA      AI  NP  A+ Y  RA  Y+KM++P  A+ D   ALE++  S K +   
Sbjct: 19  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 192 GMAHAMLGHWEEAVHDLHVA------SKIDFDEEIAAVLKKVEPNALRI 234
           G     +  ++EA+ +L  A       +++F ++I        P+ALRI
Sbjct: 79  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI--------PSALRI 119

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 134 LDEAIELSTEAIMLNPSA-IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
            +EAI+    AI L+P+  + Y+  ++ YI        I   T ALEI PD +K    R 
Sbjct: 37  FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 96
Query: 193 MAHAMLGHWEEAVHDLHVAS-KIDFD 217
            A+  LG++ +A+ DL V S   DFD
Sbjct: 97  SANESLGNFTDAMFDLSVLSLNGDFD 122

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 134 LDEAIELSTEAIMLNPSA-IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
            +EAI+    AI L+P+  + Y+  ++ YI        I   T ALEI PD +K    R 
Sbjct: 41  FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100
Query: 193 MAHAMLGHWEEAVHDLHVAS-KIDFD 217
            A+  LG++ +A+ DL V S   DFD
Sbjct: 101 SANESLGNFTDAMFDLSVLSLNGDFD 126

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
             +G   +AIE   +A+ L+P+ A  +    + Y K      AI     ALE++P++AK 
Sbjct: 20  YKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKA 79
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
           +  RG A+   G +++A+ D   A ++D
Sbjct: 80  WYRRGNAYYKQGDYQKAIEDYQKALELD 107

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
             +G  DEAIE   +A+ L+P SA  +    + Y K    + AI     ALE++P SA+ 
Sbjct: 12  YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
           +   G A+   G ++EA+     A ++D
Sbjct: 72  WYNLGNAYYKQGDYDEAIEYYQKALELD 99

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 134 LDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
            + A+    +AI LNP+ A+ +  RA+ Y K+     A++D   A+ I+P  +K Y   G
Sbjct: 28  FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 193 MAHAMLGHWEEAVHDLHVASKIDFDEE 219
           +A + L    EAV     A ++D D E
Sbjct: 88  LALSSLNKHVEAVAYYKKALELDPDNE 114

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 129 ISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
             +G  DEAIE   +A+ L+P+ A  +    + Y K    + AI     ALE++P++A+ 
Sbjct: 20  YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
           +   G A+   G ++EA+     A ++D
Sbjct: 80  WYNLGNAYYKQGDYDEAIEYYQKALELD 107

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 133 KLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
           K D+AI+    A+ L    + Y+  ++ Y+ +      +  +T ALE+ PD +K    R 
Sbjct: 21  KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA 80
Query: 193 MAHAMLGHWEEAVHDLHVAS 212
            A+  LG + +A+ DL V S
Sbjct: 81  SANEGLGKFADAMFDLSVLS 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-30
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	7e-29
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	9e-27
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-25
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-24
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-09
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	4e-20
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-18
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	1e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-06
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	4e-06
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	5e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	9e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-04
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	2e-04

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  117 bits (295), Expect = 1e-30
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 8/173 (4%)

Query: 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDAT 175
           +A E K +        K  EA      AI  NP  A+ Y  RA  Y+KM++P  A+ D  
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 176 AALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID------FDEEIAAVLKKVEP 229
            ALE++  S K +   G     +  ++EA+ +L  A  +       F ++I + L+  + 
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

Query: 230 NALRIEEHRRKY-DRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSE 281
                 E RR + +        R +  ER R   E Q  +E  + +    + +
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQ 175

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  108 bits (272), Expect = 7e-29
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAI 171
            K  +A E K +        K  EA      AI  NP  A+ Y  RA  Y+KM++P  A+
Sbjct: 4   MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63

Query: 172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID------FDEEIAAVLK 225
            D   ALE++  S K +   G     +  ++EA+ +L  A  +       F ++I + L+
Sbjct: 64  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123

Query: 226 KVEPNALRIEEHRR 239
             +       E RR
Sbjct: 124 IAKKKRWNSIEERR 137

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  103 bits (259), Expect = 4e-27
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATA 176
           A EA+ +  E  ++     A++  TE I   P  A  Y+ RA+   K+     AI D   
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 177 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEE 236
           A+E +P+  + Y  +  A   +  +  A+  L  A   D +    +  ++++    +  +
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123

Query: 237 HR 238
            R
Sbjct: 124 QR 125

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  103 bits (260), Expect = 9e-27
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 15/170 (8%)

Query: 109 EVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKP 167
              D   + A E K +A +       + AI+  ++AI LNPS AI Y  R+  Y++ +  
Sbjct: 4   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63

Query: 168 NAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAVLKK 226
             A+ DAT A+E++    KGY  R  ++  LG +  A+ D     K+   D++     ++
Sbjct: 64  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

Query: 227 VEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQ 276
                            ++++  ER +  +  +R        E    E++
Sbjct: 124 CN-------------KIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 160

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  101 bits (253), Expect = 3e-26
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 106 SSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKM 164
           S+A +     E A E K K  E   +G    A+    EA+  +P  AI+Y+ RA+   K+
Sbjct: 1   SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL 60

Query: 165 KKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAV 223
            +   A+ D    + ++    KGY  +      +  W +A      A ++D  +EE    
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

Query: 224 LKKVE 228
           ++   
Sbjct: 121 VRNCL 125

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  101 bits (253), Expect = 4e-26
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 104 GDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS----AIMYATRAS 159
           G            +  + + +  E    G    A+   T+A+ L+ +    A+++  RA+
Sbjct: 14  GTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAA 73

Query: 160 VYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDE 218
            ++K++  + A  +A+ A+E +    K    R  A   LG  ++AV DL     ++  ++
Sbjct: 74  CHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

Query: 219 EIAAVLKKVE 228
                L+ + 
Sbjct: 134 VFQEALRNIS 143

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  100 bits (250), Expect = 1e-25
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 103 MGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVY 161
           MG      +    + A   K K  E   +G   +A++  TEAI  NP  A +Y+ RA+ Y
Sbjct: 1   MGHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACY 60

Query: 162 IKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEI 220
            K+ +   A++D    +++ P   KGY  +  A   +  + +A+     A  +D   +E 
Sbjct: 61  TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

Query: 221 AAVLKKVE 228
           A   ++  
Sbjct: 121 ADGYQRCM 128

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 99.2 bits (248), Expect = 1e-25
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDA 174
           E   E K K  +A+S G +D+A++  +EAI L+P   ++Y+ R++ Y K      A  D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAVLKKVE 228
              +++ PD  KGY  +  A   L  +EEA        K +  + ++   L+ +E
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 98.4 bits (246), Expect = 3e-25
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 109 EVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKP 167
             ++E    A   K +  E +     + A+    +AI LNP+ A+ +  RA+ Y K+   
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 168 NAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
             A++D   A+ I+P  +K Y   G+A + L    EAV     A ++D
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G    A++    AI ++P+ +  Y         + K   A+     ALE++PD+      
Sbjct: 60  GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119

Query: 191 RGMAHAMLG 199
             +A   L 
Sbjct: 120 LKIAELKLR 128

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 98.3 bits (245), Expect = 1e-24
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 33/185 (17%)

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNA 169
           +      + + K++   A++  +  +AI+L T+A+ + P+  I  + RA+ Y    +   
Sbjct: 4   SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEK 63

Query: 170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEP 229
           A  DA  A  ++P  +K +   G+A   +  ++ A        + + +    A+ + +E 
Sbjct: 64  AAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE- 122

Query: 230 NALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGG 289
                                            + +        E  +   +   G   G
Sbjct: 123 -------------------------------TTKRKIEEANRGAEPPADDVDDAAGASRG 151

Query: 290 AGGMP 294
           AGGMP
Sbjct: 152 AGGMP 156

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 96.2 bits (240), Expect = 2e-24
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNA 169
           ++   +AA   K     A  +   ++A     +AI L+PS    Y  +A+VY + KK   
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 170 AIRDATAALEINPDS-------AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAA 222
            ++    A+E+  ++       AK     G A         AV   H +     D E+  
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

Query: 223 VLKKVE 228
            +K++E
Sbjct: 121 KVKELE 126

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 16/161 (9%)

Query: 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-----AIMYATRASVYIKMKKPNAAI 171
              +    A E I +G+  +A       +   PS               + K +KP  AI
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315

Query: 172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAVLKKVEPN 230
           R  +  L++ PD+    K R  A+ +   ++EA+ D   A + +  D++I   L+K +  
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ-R 374

Query: 231 ALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
            L+  + R  Y  L  +R  +K          E   AY K 
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKK---------QEIIKAYRKL 406

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 12/161 (7%)

Query: 112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAA 170
            +      +      + ++ G+L +A+     A+  +P + I Y  RA+V++ M K  AA
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79

Query: 171 IRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPN 230
           + D T  +++  D       RG      G  +EA  D     K +  E      K+ +  
Sbjct: 80  LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE---KEAQSQ 136

Query: 231 ALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
            ++ +E +R   +                    A A  +K 
Sbjct: 137 LIKSDEMQRLRSQALNAFGSGDYT--------AAIAFLDKI 169

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.0 bits (208), Expect = 6e-18
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 15/159 (9%)

Query: 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIR 172
           K +     +++A+ A   G    AI    + + +    A +   RA  +IK  +P  AI 
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL 232
           D  AA ++  D+ + +      +  LG  E ++ ++    K+D D +      K      
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK---QVK 255

Query: 233 RIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
           ++ +     + L            R  R  +A + YE  
Sbjct: 256 KLNKLIESAEELI-----------RDGRYTDATSKYESV 283

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 95.2 bits (237), Expect = 1e-21
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIR 172
           EK + A   K K  +     K D+AI+    A+ L    + Y+  ++ Y+ +      + 
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVE 60

Query: 173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVAS-KIDFDEEIA 221
            +T ALE+ PD +K    R  A+  LG + +A+ DL V S   DF++   
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 33/212 (15%), Positives = 77/212 (36%), Gaps = 1/212 (0%)

Query: 4   EKVKELKQFIDQCKSNPSILADPSLSFFRDYLESLHAKVPTDAYKEGKSEPRASVVEESE 63
            K+KE    ID   + P+ L+       +D  E+L +     ++             +  
Sbjct: 124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183

Query: 64  EEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKA 123
            E  +  +           ES  + +    +A     +++  ++ +   +++ A +  + 
Sbjct: 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL-EH 242

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
             +    +     A E   +AI L P    Y   A +                AL+++ +
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302

Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           ++  Y  RG  + +L ++++A  D   A ++D
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
              D+A +   +A  L+P +   Y   A +  +  K +      + A    P++ +    
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
                     +++A+    +A +++
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELE 402

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 11/123 (8%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIK---------MKKPNAAIRDATAALEIN 181
              D+A++    AI L      +Y   A +  K         ++    A      A +++
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445

Query: 182 PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKY 241
           P S +               +EA+     ++ +    E           A ++++  R  
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA-EAAKVQQRIRSD 504

Query: 242 DRL 244
             L
Sbjct: 505 PVL 507

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            K D+   L +EA    P +  +    A +       + A++    A+E+       Y  
Sbjct: 352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411

Query: 191 RGMA---------HAMLGHWEEAVHDLHVASKID 215
                        +  + ++ EA + L  ASK+D
Sbjct: 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 88.1 bits (219), Expect = 2e-21
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDA 174
           + A + K    +A  +   D A++   +A  L+P+       +A+VY +    N      
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 175 TAALEINPDS-------AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV 227
             A+E+  ++       AK Y   G ++     +++A+H  + +       ++    ++ 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ- 120

Query: 228 EPNALRIEEHRRKYDRL 244
                  E+  ++ +RL
Sbjct: 121 ------AEKILKEQERL 131

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-----AIMYATRASVYIKMKKPNAAI 171
              +    A E I +G+  +A       +   PS               + K +KP  AI
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292

Query: 172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           R  +  L++ PD+    K R  A+ +   ++EA+ D   A + +
Sbjct: 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 13/155 (8%)

Query: 119 AEA-KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATA 176
            E       + ++ G+L +A+     A+  +P + I Y  RA+V++ M K  AA+ D T 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 177 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEE 236
            + +  D       RG      G  +EA  D     K +  E+     +      ++ +E
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES---QLVKADE 119

Query: 237 HRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
            +R   +     +              A    +K 
Sbjct: 120 MQRLRSQALDAFDGADYT--------AAITFLDKI 146

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIR 172
           K +     +++A++A        AI    + + +    A +   RA  +IK  +P  AI 
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL 232
           D  AA ++  D+ + +      +  LG  E ++ ++    K+D D +             
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF---------- 225

Query: 233 RIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
               H ++  +L +  E  +       R  +A + YE  
Sbjct: 226 ---AHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESV 260

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            K  EAI + +E + + P +      RA  Y+  +  + AI+D  AA E N +  +  + 
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345

Query: 191 RGMAHAMLG 199
              A  +L 
Sbjct: 346 LEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 16/100 (16%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           GK   A+   T+ I L          R  + +K  K + A  D    L+ NP   +  + 
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110

Query: 191 RGMAHAM---------------LGHWEEAVHDLHVASKID 215
                                    +  A+  L    ++ 
Sbjct: 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDA 174
           + A E K +A +       + AI+  ++AI LNPS AI Y  R+  Y++ +    A+ DA
Sbjct: 4   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID---------FDEEIAAVLK 225
           T A+E++    KGY  R  ++  LG +  A+ D     K+          + E    V +
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123

Query: 226 KVEPNALRIEEHRRKY 241
           K    A+  +EH+R  
Sbjct: 124 KAFERAIAGDEHKRSV 139

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATA 176
             + K +      +G   EA+    + I   P   + Y+ +A   IK+ +   AI+    
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 177 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218
            L     +      R      L   + AV  + +    + DE
Sbjct: 64  GLRYTSTAEHVA-IRSKLQYRLELAQGAVGSVQIPVV-EVDE 103

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 1/120 (0%)

Query: 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATA 176
           A EA+ +  E  ++     A++  TE I   P  A  Y+ RA+   K+     AI D   
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 177 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEE 236
           A+E +P+  + Y  +  A   +  +  A+  L  A   D +    +  ++++    +  +
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.4 bits (202), Expect = 7e-18
 Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 8/161 (4%)

Query: 119 AEA-KAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAA 177
           A+  KA+  +     + DEAIE   +A  L+        RA+   +  +   AI     A
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDA 64

Query: 178 LEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEH 237
           +E   +    YK    + A +G+    + DL    +             +       E+ 
Sbjct: 65  VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE 124

Query: 238 RRKYDR-LRREREERKVERER------LRRRAEAQAAYEKA 271
            +K +       E+ +  R              A  AY + 
Sbjct: 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 122 KAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEIN 181
            +K+   I  G     +    + I     ++     A +  K++     ++ A A   +N
Sbjct: 78  ISKSFARI--GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135

Query: 182 PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           P+ A+  +  G  +     W  AV       K  
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 108 AEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAI-------------------MLN 148
           +   D+K ++    + K  E   +    EAI+   +A+                   +  
Sbjct: 1   SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60

Query: 149 PSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDL 208
            +  +YA  +  Y+ +   + A   ++  L+    + K    R  A       +EA  DL
Sbjct: 61  KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120

Query: 209 HVASKIDFDEEIAAVLKKVEPNALRIEEHRRK 240
            +  +       + V ++++    R  E +  
Sbjct: 121 KLLLRNH-PAAASVVAREMKIVTERRAEKKAD 151

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 80.2 bits (198), Expect = 7e-18
 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 34/181 (18%)

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-----------------AIM 153
            +EK ++A + K +  E   + +++EAI    EA+                         
Sbjct: 31  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90

Query: 154 YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213
               A+ Y K K    AI  A+  L+I+ ++ K     G+A+   G  EEA  +L+ A+ 
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 214 ID-FDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAK 272
           ++  + +I    +                    + +E RK ++       +    YE+ K
Sbjct: 151 LNPNNLDIRNSYELCV----------------NKLKEARKKDKLTFGGMFDKGPLYEEKK 194

Query: 273 K 273
            
Sbjct: 195 N 195

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.0 bits (208), Expect = 9e-18
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 5/164 (3%)

Query: 112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAA 170
            +++  A + K +     +    +EAI+    AI L+P   + Y+  ++ YI        
Sbjct: 19  SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKV 78

Query: 171 IRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPN 230
           I   T ALEI PD +K    R  A+  LG++ +A+ DL   S +  + +      +    
Sbjct: 79  IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL---SVLSLNGDFDGASIEPMLE 135

Query: 231 ALRIEEHRRKYDRLRREREERKVERERLRRRA-EAQAAYEKAKK 273
               ++  +  +    + E R  +              ++   +
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 19/84 (22%), Positives = 35/84 (41%)

Query: 132 GKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
             L +A  L  E+I L+P+   Y   A      +      +    A+++NP+    Y  R
Sbjct: 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316

Query: 192 GMAHAMLGHWEEAVHDLHVASKID 215
           G  + +L  ++ A  D   A  ++
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLN 340

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 11/141 (7%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
                A E   +A  LNP     Y   A +  K  K   +           P   +    
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREE 250
                   G ++ A+    +A +++  +E   V          +        R       
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV------GIGPLIGKATILARQ----SS 433

Query: 251 RKVERERLRRRAEAQAAYEKA 271
           +   +    +   A     KA
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKA 454

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 132 GKLDEAIELSTEAIMLNPS-----AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK 186
           G          +   L+PS     A+    R + +   K  N AI+    A+E++P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 187 GYKTRGMAHAMLGHWEEAVHDLHVASKID 215
            Y      +   G  E+ +     A +I 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIK 89

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 132 GKLDEAIELSTEAIMLNPS-----------------AIMYATRASVYIKMKKPNAAIRDA 174
           G  D AI+    A  L                        +++    +  +K NAAI+  
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE 219
           T A E++P S +           +   +EA+     ++ +    +
Sbjct: 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAI 171
            K    A   ++    + E K + AI+L T+A  L+P S       A + ++M+K + AI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

Query: 172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV 205
                +  +     +  +      A     ++ +
Sbjct: 483 ELFEDSAILARTMDEKLQ--ATTFAEAAKIQKRL 514

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 80.3 bits (198), Expect = 5e-17
 Identities = 41/248 (16%), Positives = 86/248 (34%), Gaps = 31/248 (12%)

Query: 55  RASVVEESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEK 114
            + V  +       V  E+ +   +  ++ ++ L+           +K  +S    ++EK
Sbjct: 93  HSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLK---------SFEKAKESWEMNSEEK 143

Query: 115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS----------------AIMYATRA 158
            E +   K +      EGK  +A+    + +                        +   A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203

Query: 159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FD 217
             ++K++  +AAI     ALE++ ++ KG   RG AH  +  +E A  D     ++   +
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

Query: 218 EEIAAVLKKVEPNALRIEEHRRKYDRLRRE--REERKVERERLRRRAEAQAAYEKAKKEE 275
           +     L   +    RI     +  +L         + E +     +      +   KEE
Sbjct: 264 KAAKTQLAVCQQ---RIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEE 320

Query: 276 QSSSSERP 283
           Q S++   
Sbjct: 321 QKSNTAGS 328

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 71.4 bits (176), Expect = 7e-14
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            +LD +   ST AI  NP  A  Y+   +VY +  +   AI     AL + PD   GY  
Sbjct: 47  RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 106

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFD 217
              A    G  E AV     A + + D
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPD 133

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.1 bits (170), Expect = 5e-13
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
           A      G  + A     +     P +  +    +S++ + ++ + +   +T A++ NP 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217
            A+ Y   G  +   G  +EA+     A ++  D
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G ++ A++    A+  NP    + +   ++   + +   A      A+E  P+ A  +  
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G      G    A+H    A  +D
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLD 199

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G + EA +    A+ L P  A      A++  +      A+R    ALE+ P+ A  +  
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
                   G  +EA+     A +I 
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G+L EAIE    A+ L P     Y   A+  +       A++   +AL+ NPD       
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G     LG  EEA      A +  
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
              D A+     A+ L+P  A+++   A VY +    + AI     A+E+ P     Y  
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
              A    G   EA    + A ++ 
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G +D AI+    AI L P     Y   A+   +      A      AL + P  A     
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
                   G+ EEAV     A ++ 
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G+L+EA     +AI   P  A+ ++    V+    +   AI     A+ ++P+    Y  
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G        ++ AV     A  + 
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLS 233

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G++  AI    +A+ L+P+    Y    +V  + +  + A+     AL ++P+ A  +  
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
               +   G  + A+     A ++ 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G ++EA+ L  +A+ + P  A  ++  ASV  +  K   A+     A+ I+P  A  Y  
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378

Query: 191 RGMAHAMLG 199
            G     + 
Sbjct: 379 MGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 11/68 (16%), Positives = 17/68 (25%)

Query: 154 YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213
               A    +     AA R         PD+          H      + + H   +A K
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 214 IDFDEEIA 221
            +     A
Sbjct: 62  QNPLLAEA 69

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 1/124 (0%)

Query: 104 GDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYI 162
           G + A +     +   +  A        GK D+A ++     ML+   A  +    +   
Sbjct: 4   GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ 63

Query: 163 KMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAA 222
            +     A++  +    ++ +  +        H  LG  + A    + A  +   +    
Sbjct: 64  SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123

Query: 223 VLKK 226
            L  
Sbjct: 124 ALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G  ++A++  +   +++          A  ++++   + A     +A  +          
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

Query: 191 RGMAHAML 198
              A AML
Sbjct: 126 AARAGAML 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 14/122 (11%), Positives = 40/122 (32%), Gaps = 1/122 (0%)

Query: 102 KMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASV 160
             G +  ++     +   +  + A +  ++G+++EA        + +  +       A++
Sbjct: 20  NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAI 79

Query: 161 YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI 220
           Y   ++   A      A  +  +        G     L    +A     +  +   DE++
Sbjct: 80  YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139

Query: 221 AA 222
             
Sbjct: 140 KI 141

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 1/67 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            +  +A +L   A  L               +++K P  A       ++ + D     K 
Sbjct: 84  EQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143

Query: 191 RGMAHAM 197
           +    A+
Sbjct: 144 QSYLDAI 150

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 19/161 (11%), Positives = 43/161 (26%), Gaps = 12/161 (7%)

Query: 112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAA 170
           +       +   + +  + EG L  A+ L   A+  +P     +    +   + ++   A
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117

Query: 171 IRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPN 230
           I      LE+ PD+        ++        +A   L    +            +    
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177

Query: 231 ALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
              +   +R    L                  E +  +  A
Sbjct: 178 GAGLGPSKRILGSLL-----------SDSLFLEVKELFLAA 207

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 32/169 (18%)

Query: 130 SEGKLDEAIELSTEAIMLNPS---AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK 186
           S+    E  EL   A+ L+P+     +      ++    + + A+   TAAL + P+   
Sbjct: 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252

Query: 187 GYKTRGMAHAMLGHWEEAVHDLHVASKID-------------------FDEEIAAVLKKV 227
            +   G   A     EEAV     A ++                      E +   L+  
Sbjct: 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE-- 310

Query: 228 EPNALRI-----EEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
              AL +                      ++    L +     AA  + 
Sbjct: 311 ---ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 6/105 (5%)

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAA 170
           E  A+  A+A   +S+   D       +                       ++      A
Sbjct: 25  EEMAKRDAEAHPWLSD-YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83

Query: 171 IRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           +    AA++ +P   + ++  G   A       A+  L    ++ 
Sbjct: 84  VLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 18/103 (17%)

Query: 131 EGKLDEAIELSTEAIMLNPS-AIMYATR---------------ASVYIKMKKPNAAIRDA 174
           E    +A E+  + +   P+ A +                       +            
Sbjct: 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF 204

Query: 175 TAALEINPDS--AKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
            AA+ ++P S         G+   + G +++AV     A  + 
Sbjct: 205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 1/92 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P   +  A+       ++     +     A  + P       +
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 451

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAA 222
            G     L      +     A     ++ + A
Sbjct: 452 NGGGRPALESIVAQLSRPDPALAALTNDHLVA 483

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 15/153 (9%), Positives = 41/153 (26%), Gaps = 17/153 (11%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P   +  A+       ++     +     A  + P       +
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIA-----AVLKKVEPNALRIEEHRRKYDR-- 243
                  L   +  +  L  A  +  ++ +A        + +E     ++       +  
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE----TVQRLLPVLCQAH 405

Query: 244 -LRREREE----RKVERERLRRRAEAQAAYEKA 271
            L  E+          ++ L           +A
Sbjct: 406 GLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 438

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 14/153 (9%), Positives = 40/153 (26%), Gaps = 17/153 (11%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P   +  A+       ++     +     A  + P       +
Sbjct: 222 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 281

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIA-----AVLKKVEPNALRIEEHRRKYDR-- 243
                  L   +  +  L  A  +   + +A        + +E     ++       +  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE----TVQRLLPVLCQAH 337

Query: 244 -LRREREE----RKVERERLRRRAEAQAAYEKA 271
            L  ++          ++ L           +A
Sbjct: 338 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 370

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 9/85 (10%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPSAIM-YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P  ++  A+       ++     +     A  + P+      +
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
                  L   +  +  L  A  + 
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLT 442

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 14/149 (9%), Positives = 39/149 (26%), Gaps = 9/149 (6%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P   +  A+       ++     +     A  + P+      +
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL-RIEEHRRKYDR-LRRER 248
                  L   +  +  L  A  +  ++ +A         AL  ++       +      
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205

Query: 249 E------ERKVERERLRRRAEAQAAYEKA 271
           +           ++ L           +A
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQA 234

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 15/153 (9%), Positives = 41/153 (26%), Gaps = 17/153 (11%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P   +  A+       ++     +     A  + P       +
Sbjct: 154 ETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 213

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIA-----AVLKKVEPNALRIEEHRRKYDR-- 243
            G     L   +  +  L  A  +   + +A        + +E     ++       +  
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE----TVQRLLPVLCQAH 269

Query: 244 -LRREREE----RKVERERLRRRAEAQAAYEKA 271
            L  ++          ++ L           +A
Sbjct: 270 GLTPQQVVAIASNSGGKQALETVQRLLPVLCQA 302

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 20/174 (11%), Positives = 48/174 (27%), Gaps = 21/174 (12%)

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNA 169
           T +  + A      A+EA+          L+   + L P   +  A+       ++    
Sbjct: 35  TGQLLKIAKRGGVTAVEAVH----AWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQR 90

Query: 170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIA-----AVL 224
            +     A  + P       +       L   +  +  L  A  +  ++ +A        
Sbjct: 91  LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK 150

Query: 225 KKVEPNALRIEEHRRKYDR---LRREREE----RKVERERLRRRAEAQAAYEKA 271
           + +E     ++       +   L  E+          ++ L           +A
Sbjct: 151 QALE----TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA 200

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 68.6 bits (167), Expect = 8e-13
 Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 158 ASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-F 216
           A  Y+K+++   A+     AL ++  + KG   RG A  ++  +E A  D     +++  
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383

Query: 217 DEEIAAVLKKVEPNALRIEEHRRKYDRL------RREREERKVERERLRRRAEAQAAYEK 270
           ++     +   +    + +EH  +  R+      +   ++ K E  +   +  ++    +
Sbjct: 384 NKAARLQISMCQ---KKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNE 440

Query: 271 AKKEEQSSSSERPGG 285
              + Q+   E+P G
Sbjct: 441 KGTDSQAMEEEKPEG 455

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 17/125 (13%)

Query: 132 GKLDEAIELSTEAIMLNPS----------AIMYATRASVYIKMKKPNAAIRDATAALEIN 181
           G+   A +   +A+    +            +      V  K+KK   A+     AL + 
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

Query: 182 PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL----RIEEH 237
           P +A  Y   G  H+++G++E AV   H A  +  D+  +  +     + +       E 
Sbjct: 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG---HCIEMYIGDSEA 323

Query: 238 RRKYD 242
               D
Sbjct: 324 YIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 26/150 (17%), Positives = 42/150 (28%), Gaps = 30/150 (20%)

Query: 131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189
           E + D+A+     A  L     +        Y        A R  + AL I P+      
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH 197

Query: 190 TRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEP------NALRIEEHRRKYDR 243
             G+     G W+ A      A +          + K EP      +  R          
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR---------- 247

Query: 244 LRREREERKVERERLRRRAEAQAAYEKAKK 273
                        +L++ AEA   + +A  
Sbjct: 248 -------------KLKKYAEALDYHRQALV 264

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM-KKPNAAIRDATAALEINPDSAKGYK 189
            K +E   LS + + L P + + +      Y+ +  K   A R  + A  +       + 
Sbjct: 70  NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWI 129

Query: 190 TRGMAHAMLGHWEEAVHDLHVASKID 215
             G + A+    ++A+     A+++ 
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLM 155

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
                  +L++  +  +P  A          +++ K N     +   +++ P +   +  
Sbjct: 36  CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95

Query: 191 RGMAHAMLGH-WEEAVHDLHVASKID 215
            G  + M+GH  E A   L  A+ ++
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLE 121

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 130 SEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189
           SE  + E+++   E    N       + A  +          +  +  +E +P  A    
Sbjct: 7   SETVIPESVDGLQE----NLDV--VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 190 TRGMAHAMLGHWEEAVHDLHVASKIDFDEEIA 221
                   L    E  +  H    +     ++
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATA---ALE 179
            A          EAIE+  +       S  +Y  RA  Y ++ K + A +D       + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
                +  ++  G      G    A+     A   D
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD 104

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 132 GKLDEAIELS---TEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
            K D A +        +      +  +     + +K  + + AI+   AA++ +      
Sbjct: 51  AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID 215
           Y   G      G++  A+  +    +  
Sbjct: 111 YGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G+   AI+    A+  + +   MY    S +        AI+     +       K +  
Sbjct: 88  GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE 147

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G A+     + +A        ++ 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELK 172

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 4/94 (4%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G    AI+   + I        ++      Y   K+   A       LE+ P+   GY  
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181

Query: 191 RGMAHAMLGHW---EEAVHDLHVASKIDFDEEIA 221
           R  A+A          A        ++       
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 3/76 (3%)

Query: 147 LNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVH 206
           +N         A    K      AI           +S   Y  R + +  L  ++ A  
Sbjct: 1   MNDDV--EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQK 58

Query: 207 DLHVASK-IDFDEEIA 221
           D+      ++  +  +
Sbjct: 59  DIETYFSKVNATKAKS 74

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 12/96 (12%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK---KPNAAIRDATAALEI------- 180
            +  +A     + + L P   I Y  RA          K   A       +E+       
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

Query: 181 -NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
              +  +  +     + +     +A         +D
Sbjct: 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 9/73 (12%)

Query: 131 EGKLDEAIELSTEAIMLNPSAIM---------YATRASVYIKMKKPNAAIRDATAALEIN 181
           + K   A     + I +                   A  Y   +    A       L ++
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251

Query: 182 PDSAKGYKTRGMA 194
           P + K      M 
Sbjct: 252 PTNKKAIDGLKMK 264

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATA 176
            A  K+    AI+      A+ L  +        A  +A     Y K+K  +AAI     
Sbjct: 484 VAFNKSDMQTAINH--FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 177 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALR 233
            L ++ + A  +    + +        A+  LH +  I  +E +A+ L K    AL 
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK---RALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 24/162 (14%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            K+ EA    +++  ++P     +   A  +    + + AI   T A  +   +   Y  
Sbjct: 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446

Query: 191 RGMAHAMLGHWEEAVHDLHVASKI--DFDE---EIAAVLKKVEPNALRIEEHRRKYDR-- 243
            GM H  LG+   A   L  +  +         E+  V          ++     +    
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS----DMQTAINHFQNAL 502

Query: 244 -LRREREERKVERE-----------RLRRRAEAQAAYEKAKK 273
            L ++ +  +               +L+    A  A  +   
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 11/85 (12%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            +  + + ++T+ + ++P +  +Y    +   +  + N     +   ++ +P+ A  +  
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G+ +  +    EA      +S +D
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMD 403

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 13/85 (15%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G+ ++   +S + +  +P  A+ +      Y+ + K + A R  + +  ++P     +  
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
              + A+ G  ++A+     A+++ 
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLF 437

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 1/93 (1%)

Query: 130 SEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188
           S        E    +I     S+ +   +A       +    +   T  LEI+P +   Y
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342

Query: 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIA 221
                +    G   +     +       ++ + 
Sbjct: 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 132 GKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
                A +L  +   +   A M   R  VY  +   + A      AL ++    + +   
Sbjct: 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240

Query: 192 GMAHAMLGHWEEAVHDLHVASKIDFDEEI 220
             ++ +L   EE      +  K+++    
Sbjct: 241 V-SNHLLTADEE----WDLVLKLNYSTYS 264

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 22/184 (11%), Positives = 47/184 (25%), Gaps = 17/184 (9%)

Query: 94  EADNDPPQKMGDSSAEVTDEKREAAAEAKAK------AMEAISEGKLDEAIELSTEAIML 147
                         + + +   +       +        +A+ + +   A  +  + + +
Sbjct: 54  SPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI 113

Query: 148 NPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHD 207
             +       A VY        A    T     N  SA  Y         L  W+ A   
Sbjct: 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYL-AAFCLVKLYDWQGA--- 169

Query: 208 LHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAA 267
           L++  + +   +      K+      I+               R      L     A+  
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC-------YLRGQVYTNLSNFDRAKEC 222

Query: 268 YEKA 271
           Y++A
Sbjct: 223 YKEA 226

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 344 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMA 393
            + + DPE+ A   DP + + LQ   +NPA L +H  NP+V   I  ++A
Sbjct: 14  QRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA 63

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 28/158 (17%)

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
           + + A  +     A++  +     +P + +      +Y  +K    A +  T ++  +  
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69

Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDR 243
            A  Y  RGM +     ++ A+ DL  A            L ++  N          Y  
Sbjct: 70  LAVAYFQRGMLYYQTEKYDLAIKDLKEA------------LIQLRGN------QLIDYKI 111

Query: 244 LRREREERKVE--------RERLRRRAEAQAAYEKAKK 273
           L  + +    E          +     +A+     A  
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAAL-EINPDSAKGYK 189
             + EA +  T +I  +   A+ Y  R  +Y + +K + AI+D   AL ++  +    YK
Sbjct: 51  KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110

Query: 190 T---------------RGMAHAMLGHWEEAVHDLHVASKIDFDEE 219
                               +A    W++A   L +A+ +  +  
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 31/189 (16%)

Query: 72  EEKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKR--EAAAEAKAKAMEAI 129
           E KE ++  I   D    GD        P    D+  ++ D  +    + + K       
Sbjct: 183 ELKEGDDWGIFPKDGS--GD------SHPDFPEDADVDLKDVDKILLISEDLKNIGNTFF 234

Query: 130 SEGKLDEAI----------ELSTEAIMLNPSAIMYATR-------ASVYIKMKKPNAAIR 172
                + AI          E S  A      A +            +  +KM     A+ 
Sbjct: 235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294

Query: 173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAVLKKVEPNA 231
               ALEI+P + K    R      L  +++A+ DL  A +I   D+ I A L KV+   
Sbjct: 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK--- 351

Query: 232 LRIEEHRRK 240
            +I+  + K
Sbjct: 352 QKIKAQKDK 360

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.8 bits (162), Expect = 5e-12
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           GKL EA+    EAI ++P  A  Y+   +   +M+    A++  T A++INP  A  +  
Sbjct: 57  GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIA 221
               H   G+  EA+     A K+  D   A
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 1/122 (0%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +  A++  T AI +NP  A  ++  AS++        AI     AL++ PD    Y  
Sbjct: 91  QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREE 250
                 ++  W +    +     I  D+     L  V P+   +      + +   ER  
Sbjct: 151 LAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHG 210

Query: 251 RK 252
             
Sbjct: 211 NL 212

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.4 bits (143), Expect = 9e-10
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G ++EA+ L  +A+ + P  A  ++  ASV  +  K   A+     A+ I+P  A  Y  
Sbjct: 23  GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G     +   + A+     A +I+
Sbjct: 83  MGNTLKEMQDVQGALQCYTRAIQIN 107

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 63.7 bits (156), Expect = 7e-12
 Identities = 18/84 (21%), Positives = 32/84 (38%)

Query: 132 GKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
           G+ D+A     +A+ L  +  + +  A +Y+ M + + A+     ALE  P         
Sbjct: 132 GERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191

Query: 192 GMAHAMLGHWEEAVHDLHVASKID 215
             A  + G  EEA     +     
Sbjct: 192 ASALLLKGKAEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G+ D A+ L   A+  NP         A   +K+   N A+ +    +   P    GY  
Sbjct: 19  GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAA 222
              A+  L    E         K   ++ ++ 
Sbjct: 79  LSEAYVALYRQAEDRE----RGKGYLEQALSV 106

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189
           +G L++A+ +  +A  +NP  A ++  R  VY  + + + A      AL +     +   
Sbjct: 97  KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRS 155

Query: 190 TRGMAHAMLGHWEEAV 205
                +  +G  +EA+
Sbjct: 156 ALAELYLSMGRLDEAL 171

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 132 GKLDEAIELSTEAIMLNPS------------AIMYATRASVYIKMKKPNAAIRDATAALE 179
           G ++ A+E     +   P               +Y               A+     A  
Sbjct: 53  GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112

Query: 180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           +NP  A  +  RG+ +A+LG  ++A   L  A  ++
Sbjct: 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 13/129 (10%), Positives = 27/129 (20%), Gaps = 27/129 (20%)

Query: 148 NPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHD 207
                           + + +AA+     AL+ NP   +           LG    A+ +
Sbjct: 4   AEQN--PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 208 LHVASKIDFDEEIA-----AVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRA 262
                                   +   A   E  +   +                    
Sbjct: 62  GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE-------------------- 101

Query: 263 EAQAAYEKA 271
           +A +  + A
Sbjct: 102 QALSVLKDA 110

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 63.7 bits (156), Expect = 8e-12
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE 179
              +       G  ++A E  T+AI  N   AI Y   A++   + +   A+     ALE
Sbjct: 26  GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE 85

Query: 180 INPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           ++  +A  Y   G  + +   ++EA      A +  
Sbjct: 86  LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            +   A+     A+ LN                    + A+    A  E +P  A  +  
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G+ +A   + E+A+  L  A  I 
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQ 223

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
               EA ++  +A+     +  ++    +V +K+++P  A+     A+E+N +  +    
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ 164

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFD 217
            GM  A  G  +EA+      ++ D  
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPG 191

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            +L+ A+    +A+ L+ S A  Y    +VY+  +    A      AL    ++   +  
Sbjct: 71  NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM 130

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G     L   + A+  L  A +++
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELN 155

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 134 LDEAIELSTEAIMLNPSAI-----MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188
           +  +      +  L P            +     +      A    T A+E N + A  Y
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 189 KTRGMAHAMLGHWEEAVHDLHVASKID 215
                  + +   E A+     A ++D
Sbjct: 61  INFANLLSSVNELERALAFYDKALELD 87

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.1 bits (126), Expect = 7e-08
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G LDEA+         +P  A  +      Y   +    A+     A++I PD       
Sbjct: 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232

Query: 191 RGMAHAMLGH 200
           + +      H
Sbjct: 233 KKLLGHHHHH 242

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 15/149 (10%), Positives = 34/149 (22%), Gaps = 12/149 (8%)

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINP 182
           + +  +    L EA           P     + +      + +K   AI     A  ++P
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 183 DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD 242
                +    ++H    +   A+  L          E    +       +     + +  
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146

Query: 243 RLRREREERKVERERLRRRAEAQAAYEKA 271
                               E +     A
Sbjct: 147 FFA-----------APNEYRECRTLLHAA 164

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 15/141 (10%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
              D A      A+ L P  A ++    +      +P  A+     AL+INP   +    
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREE 250
             ++++ +  ++ A   L  A  +                    E  R  +D  R     
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT-------GEASREATRSMWDFFRMLLNV 298

Query: 251 RKVERERLRRRAEAQAAYEKA 271
                  + R    +  Y + 
Sbjct: 299 -------MNRPDLVELTYAQN 312

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 131 EGKLDEAIELSTEAIMLNP----------------SAIMYATRASVYIKMKKPNAAIRDA 174
           E   + A+      ++  P                  +   +    +    +        
Sbjct: 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
            AALE+NP+ A+ + + G+ + +  +++ A  +L  A ++ 
Sbjct: 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 27/159 (16%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G    A    ++A+ + P    ++        +    +AA     + LE++P     +  
Sbjct: 57  GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 116

Query: 191 RGMAHAMLGHWEEAVHDLHVA------------------SKIDFDEEIAAVLKKVEPNAL 232
           RG+A    G  + A  DL                      K+D  +    + +  E +  
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176

Query: 233 RIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
                      L    E+  +E          +A     
Sbjct: 177 EQWGWNIVEFYLGNISEQTLME--------RLKADATDN 207

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 8/78 (10%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 131 EGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189
           +  ++     +T+   L    +         Y+ +   ++A      A+  N  +   ++
Sbjct: 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 253

Query: 190 TRGMAHAMLGHWEEAVHD 207
              +  ++LG  ++ + +
Sbjct: 254 YALLELSLLGQDQDDLAE 271

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 132 GKLDEAIELSTEAI----MLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK 186
            + +  +    + +    + +   A +   R  +Y  +     A  D + AL I PD  +
Sbjct: 19  LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 78

Query: 187 GYKTRGMAHAMLGHWEEAVHDLHVASKID 215
            +   G+     G+++ A        ++D
Sbjct: 79  VFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 32/148 (21%)

Query: 128 AISEGKLDEAIELSTEAIMLNPS-----AIMYATRASVYIKMKKPNAAIRDATAALEINP 182
           A  +    +A E+  +    +        I+     ++  +         DAT    +  
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAE 212

Query: 183 DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD 242
             ++     G  +  LG  + A     +A   +                    EHR    
Sbjct: 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN---------------FVEHR---- 253

Query: 243 RLRREREERKVERERLRRRAEAQAAYEK 270
                     +E   L +  +  A  ++
Sbjct: 254 -------YALLELSLLGQDQDDLAESDQ 274

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 22/187 (11%)

Query: 73  EKEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEG 132
           ++       V    +L  ++     D  ++    S    +E+  AA   K        E 
Sbjct: 134 KEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEE 193

Query: 133 KLDEAIEL------------------STEAIMLNPSAIMYATRASVYIKMKKPNAAIRDA 174
           KL+EA++                     + + L      +   A+  IK+K+ + AI   
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAVLKKVEPNALR 233
              L     + K    RG A A LG  + A  D   A K    D+ I   L+ +     +
Sbjct: 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE---Q 310

Query: 234 IEEHRRK 240
            +   +K
Sbjct: 311 EKALYQK 317

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 33/215 (15%), Positives = 64/215 (29%), Gaps = 36/215 (16%)

Query: 76  EEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKA------------ 123
           E     VESD E    +     +  ++   S  +    +   +A  K             
Sbjct: 6   ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65

Query: 124 -----KAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAA 177
                + ++ + EG L   I     AI+ +P  A  +        + +   AAI      
Sbjct: 66  PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125

Query: 178 LEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD-EEIAAVLKKVEPNALRIEE 236
           LE+ P++ K      +++    H ++A   L    K +   + +    K       R+ +
Sbjct: 126 LELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185

Query: 237 HRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
                  L                    +  Y +A
Sbjct: 186 SPVDSSVLE-----------------GVKELYLEA 203

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 8/141 (5%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G+ + AI+    A+ + P    ++    +      +   A+   T ALEI P   +    
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREE 250
            G++   LG + EAV +   A  +         +     +       R     + +    
Sbjct: 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346

Query: 251 RKVERERLRRRAEAQAAYEKA 271
           +      L           +A
Sbjct: 347 QAANLGDL-------DVLLRA 360

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 130 SEGKLDEAIELSTEAIMLNPS---AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK 186
               L+   EL  EA   N       +      ++    + N AI    AAL + P+   
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

Query: 187 GYKTRGMAHAMLGHWEEAVHDLHVASKID 215
            +   G   A     EEAV     A +I 
Sbjct: 249 LWNRLGATLANGDRSEEAVEAYTRALEIQ 277

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 1/101 (0%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
                AI      + L P+        A  Y        A       ++ NP      K 
Sbjct: 113 ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNA 231
           +  +  +     ++  D  V   +      AA       + 
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 59.4 bits (145), Expect = 3e-11
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDS--AKGY 188
           G   E+I+L  +AI L+P  +  +  +      +++   A+      + +  D      +
Sbjct: 20  GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79

Query: 189 KTRGMAHAMLGHWEEAVHDLHVASKID 215
             +  A   +   E         +K++
Sbjct: 80  AAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 46.7 bits (112), Expect = 7e-07
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 24/128 (18%)

Query: 146 MLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV 205
           M++ +   Y     +         +I     A++++P+ +K +  +G A   L  +EEAV
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 206 HDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQ 265
                     ++  I      V  +    +    K D LR            +  +    
Sbjct: 61  --------DCYNYVI-----NVIEDEYNKDVWAAKADALR-----------YIEGKEVEA 96

Query: 266 AAYEKAKK 273
              E   K
Sbjct: 97  EIAEARAK 104

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 132 GKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
            + +EA++     I +     +  ++A +A     ++        A A  ++   
Sbjct: 54  ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            K D A+ L  +    NP +  +          + + + AI     AL + P+  K ++ 
Sbjct: 90  QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149

Query: 191 RGMAHAMLGHWEEAVHDLHVASKI--DFDEEIAAVLK 225
              ++  +G  EEA+     A+++      E+A V +
Sbjct: 150 IAFSYEQMGRHEEALPHFKKANELDEGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G+  +A+ L  +    +     +       Y+K    +        +L   PD+ K    
Sbjct: 22  GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G+ +  +  ++ AV  L   ++ +
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEAN 106

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.1 bits (139), Expect = 7e-10
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G +D   EL   ++   P    +       Y++++K + A+       E NP +      
Sbjct: 56  GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G+A   LG ++EA+    +A  + 
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLR 140

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.4 bits (101), Expect = 7e-05
 Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 145 IMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE 203
           +  +    + Y  +   + K  + + A+       + +          G+A+   G  + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 204 AVHDLHVASKIDFD 217
               L  +     D
Sbjct: 61  GTELLERSLADAPD 74

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----------------SAIMYATRA 158
           ++  E   K   AI  G+  +A+    + I LN                  S+ +    A
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
             Y K +  + A       L+  P++    +         G  ++A+       +++
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 2/98 (2%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYI-KMKKPNAAIRDATAALEINPDSAKGYK 189
           G+  +A+ +  + + L            + Y    ++    +      L           
Sbjct: 102 GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161

Query: 190 TRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV 227
             G++      +E+A + L          E    L K+
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 2/87 (2%)

Query: 131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189
               D+A     E +   P +       A + +   +   A+R     L++  D+     
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126

Query: 190 TRGMA-HAMLGHWEEAVHDLHVASKID 215
             G   +      ++ +   +      
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSP 153

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 8/113 (7%)

Query: 134 LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
           +    E     +     + ++  T    Y + ++ +AA+    AAL+ +P  +  +K  G
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 193 MAHAMLGHWEEAVHDLHVASKIDFD-------EEIAAVLKKVEPNALRIEEHR 238
                 G    A                    +E+   L+++         H 
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 56.6 bits (138), Expect = 4e-10
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G  DEAIE   +A+ L+P  A  +    + Y K    + AI     ALE++P SA+ +  
Sbjct: 15  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G A+   G ++EA+     A ++D
Sbjct: 75  LGNAYYKQGDYDEAIEYYQKALELD 99

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 56.2 bits (137), Expect = 4e-10
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G  DEAIE   +A+ L+P  A  +    + Y K    + AI     ALE++P SA+ +  
Sbjct: 49  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G A+   G ++EA+     A ++D
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.9 bits (105), Expect = 9e-06
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDS 184
           G  DEAIE   +A+ L+P  A  +    + Y K    + AI     ALE++P S
Sbjct: 83  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHV 210
           A  +    + Y K    + AI     ALE++P SA+ +   G A+   G ++EA+     
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 211 ASKID 215
           A ++D
Sbjct: 61  ALELD 65

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 15/162 (9%)

Query: 90  GDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP 149
           G +           G + A + +   +   +  + A      G  ++A  +     +L+ 
Sbjct: 1   GPLGSG--------GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH 52

Query: 150 -SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDL 208
             +  +    +    M + + AI   +    ++    +            G   EA   L
Sbjct: 53  YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112

Query: 209 HVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREE 250
            +A ++  +      L        R+          +  + E
Sbjct: 113 FLAQELIANXPEFXELST------RVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.0 bits (114), Expect = 5e-07
 Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 5/149 (3%)

Query: 132 GKLDEAIELSTEAIMLNPSAI--MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK 189
           G L            ++   +  +Y+  A    +      A     A   ++   ++ + 
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYS-LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL 59

Query: 190 TRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAVLKKVEPNALRIEEHRRKYDRLRRER 248
             G     +G ++ A+H     + +D  +        +       + E         +E 
Sbjct: 60  GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLA-QEL 118

Query: 249 EERKVERERLRRRAEAQAAYEKAKKEEQS 277
                E   L  R  +     K KKE + 
Sbjct: 119 IANXPEFXELSTRVSSMLEAIKLKKEMKH 147

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P   +  A+       ++     +     A  + PD      +
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
                  L   +  +  L  A  + 
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLT 358

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 14/148 (9%), Positives = 37/148 (25%), Gaps = 8/148 (5%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P   +  A+       ++     +     A  + PD      +
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRRER-- 248
            G     L   +  +  L  A  +  D+ +A      +     ++       +       
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPD 427

Query: 249 -----EERKVERERLRRRAEAQAAYEKA 271
                      ++ L           + 
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLCQT 455

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 132 GKLDEAIELSTEAIMLNPSAIM-YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P  ++  A+       ++     +     A  +  +      +
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIA 221
                  L   +  +  L  A  +  D+ +A
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVA 737

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P+  +  A+       ++     +     A  + PD      +
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
                  L   +  +  L  A  + 
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLT 290

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 16/149 (10%), Positives = 41/149 (27%), Gaps = 9/149 (6%)

Query: 132 GKLDEAIELSTEAIMLNPSAIM-YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L    ++  A+       ++     +     A  + P       +
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL-RIEEHRRKYDR---LRR 246
                  L   +  +  L  A  +  D+ +A         AL  ++       +   L +
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698

Query: 247 EREE----RKVERERLRRRAEAQAAYEKA 271
           E+          ++ L           +A
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQA 727

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 132 GKLDEAIELSTEAIMLN-PSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             + + + +  +A  L     +  A+       +      +     A  + PD      +
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIA 221
            G     L   +  +  L  A  +  D+ +A
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 15/142 (10%), Positives = 39/142 (27%), Gaps = 2/142 (1%)

Query: 132 GKLDEAIELSTEAIMLNPSAIM-YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L    ++  A+       ++     +     A  + PD      +
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL-RIEEHRRKYDRLRRERE 249
            G     L   +  +  L  A  +   + +A         AL  ++       +      
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800

Query: 250 ERKVERERLRRRAEAQAAYEKA 271
            + V         +A    ++ 
Sbjct: 801 AQVVAIASNIGGKQALETVQRL 822

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 14/149 (9%), Positives = 38/149 (25%), Gaps = 9/149 (6%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             +   + +  +A  L P   +  A+       ++     +     A  +         +
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIAS 604

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNAL-RIEEHRRKYDR---LRR 246
                  L   +  +  L  A  +   + +A         AL  ++       +   L  
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664

Query: 247 EREE----RKVERERLRRRAEAQAAYEKA 271
           ++          ++ L           +A
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQA 693

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 5/99 (5%)

Query: 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATA 176
           A      AMEA+          L+   + L P   +  A+       ++     +     
Sbjct: 162 AKRGGVTAMEAV----HASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQ 217

Query: 177 ALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           A  + P       +       L   +  +  L  A  + 
Sbjct: 218 AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIM-YATRASVYIKMKKPNAAIRDAT 175
               + A+A+EA+    L +A EL    + L+   ++  A R  V        +      
Sbjct: 127 GKQWSGARALEAL----LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTG 182

Query: 176 AALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           A L + P       +       L   +  +  L  A  + 
Sbjct: 183 APLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 222

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.9 bits (131), Expect = 2e-09
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G  DEAIE   +A+ L+P+ A  +    + Y K    + AI     ALE++P++A+ +  
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82

Query: 191 RGMAHAMLGHWEEAV 205
            G A+   G ++EA+
Sbjct: 83  LGNAYYKQGDYDEAI 97

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G  DEAIE   +A+ L+P+ A  +    + Y K    + AI     ALE++P++A+  + 
Sbjct: 57  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116

Query: 191 RGMAHAMLG 199
            G A    G
Sbjct: 117 LGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 147 LNPS--AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEA 204
           ++P   A  +    + Y K    + AI     ALE++P++A+ +   G A+   G ++EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 205 VHDLHVASKIDFD 217
           +     A ++D +
Sbjct: 63  IEYYQKALELDPN 75

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 20/168 (11%), Positives = 39/168 (23%), Gaps = 14/168 (8%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G            + L+P      A    V    ++   A      A +  P+       
Sbjct: 37  GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96

Query: 191 RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAV----LKKVEPNALRIEEHRRKYDRLRR 246
            G A    G  E A      A ++  +E          ++   +   ++    +      
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156

Query: 247 EREERK---------VERERLRRRAEAQAAYEKAKKEEQSSSSERPGG 285
           +                       A  +A    A     + +  R  G
Sbjct: 157 QGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSKG 204

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
                 +     A+   P   + +   A   + M    A        L ++P   +    
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
            G          EA   L  AS   
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAA 87

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 8/113 (7%)

Query: 167 PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD-EEIAAVLK 225
               +    AA+   P     +     A   +G        +     +     E  A L 
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 226 KVEPNALRIEEHRRKYDR-LRREREERKVER------ERLRRRAEAQAAYEKA 271
           +V     R  E      +      E   +        E   +   A AAY +A
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEIN 181
              E I++G ++ A++   E +   P      Y    + Y K+     A+ +  +A+E+N
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 182 PDSAKGYKTRGMAHAMLG 199
           PDS         A  M+ 
Sbjct: 66  PDSPALQ-----ARKMVM 78

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 157 RASVYIKMKKPNAAIRDATAALEINP-DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
                I       A++     L+  P    + Y   G A+  LG W++A+++   A +++
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 17/160 (10%), Positives = 45/160 (28%), Gaps = 22/160 (13%)

Query: 114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPN-AAI 171
           +  +  +A  K  +   + ++++ ++   E +      A     +          +  A 
Sbjct: 66  ETHSVEDAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAE 123

Query: 172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNA 231
              + A+++ P+  + +   G  +   G    A      A                  N 
Sbjct: 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-------------KNK 170

Query: 232 LRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
                 +     LR  + +     E  R   ++    + A
Sbjct: 171 ---VSLQNLSMVLR--QLQTDSGDEHSRHVMDSVRQAKLA 205

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 4/78 (5%)

Query: 132 GKLDEAIELSTEAIMLNPSAIMYAT----RASVYIKMKKPNAAIRDATAALEINPDSAKG 187
               +A+    +A  ++  A         RA+++   +    A+   + A  ++P   + 
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294

Query: 188 YKTRGMAHAMLGHWEEAV 205
            +        L      +
Sbjct: 295 QQREQQLLEFLSRLTSLL 312

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.6 bits (118), Expect = 9e-07
 Identities = 19/185 (10%), Positives = 52/185 (28%), Gaps = 27/185 (14%)

Query: 123 AKAMEAISEGKLDEAIELSTEAIMLNPS------------AIMYATRASVYIKMKKPNAA 170
                      + +++  +  A+ ++                +Y          ++  +A
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 171 IRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD-----EEIAAVLK 225
              A         +   +  R   H     + EA+     A+ +D       +    +L+
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303

Query: 226 KVEPNALRIEEHRRKYDRLRREREE------RKVERERLRRRAEAQAAYEKAKKEEQSSS 279
            +     R+        + + ++ +      R              A+ +K   E +  S
Sbjct: 304 FLS----RLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLS 359

Query: 280 SERPG 284
           + +PG
Sbjct: 360 TLQPG 364

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 12/147 (8%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATA----ALEINPDSAK 186
                AI+   +AI LNP    +    A    KM++      +       ALE  P    
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248

Query: 187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRR 246
             ++    +      ++A+  L  A +   +              +      + +  +  
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH-------CQIGCCYRAKVFQVMNL 301

Query: 247 EREERKVERERLRRRAEAQAAYEKAKK 273
                  +R+ L     A A  +KA +
Sbjct: 302 RENGMYGKRKLLELIGHAVAHLKKADE 328

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 8e-07
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 130 SEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188
              +  E  +L  EA+   P    +  + A  Y +  +P+ AI     ALE  P++A  +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI 220
              G  +         + +  +  K    E I
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELI 316

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 20/113 (17%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKP-------------------NAAI 171
            + D+AIEL  +A+   P +A ++      Y                           A+
Sbjct: 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320

Query: 172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVL 224
                A E N +  +        HA+   +EEA +        +       +L
Sbjct: 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 9/74 (12%)

Query: 132 GKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR 191
              D+AI    E + +N  +           K K  +   + A   L  N   ++     
Sbjct: 386 KCEDKAIHHFIEGVKINQKS---------REKEKMKDKLQKIAKMRLSKNGADSEALHVL 436

Query: 192 GMAHAMLGHWEEAV 205
                +    ++A 
Sbjct: 437 AFLQELNEKMQQAD 450

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 1/93 (1%)

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINP 182
           + +  +    L EA           P     + +      + +K   AI     A  ++P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 183 DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
                +    ++H    +   A+  L       
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 10/60 (16%), Positives = 22/60 (36%)

Query: 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
                 +K+     A     A  +  P+  + +++ G+  A       A+  L+ A  +D
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 132 GKLDEAIELSTEAIMLNPS----AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
           G   +A+    +AI         A  Y    S +  + +   A       ++  P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAA 222
                M    LG +E+ V  L         DE I +
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 18/89 (20%), Positives = 29/89 (32%)

Query: 106 SSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMK 165
            +     E    +   + KA+ A+ +GK DE+ +     I L  S + Y     VY    
Sbjct: 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKG 324

Query: 166 KPNAAIRDATAALEINPDSAKGYKTRGMA 194
               A      A  + P +   Y      
Sbjct: 325 MNREAADAYLTAFNLRPGANTLYWIENGI 353

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 4/102 (3%)

Query: 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRD 173
           A  +    +   + E +L          + L      +I+Y  +A   +   K + + + 
Sbjct: 240 ALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQA 299

Query: 174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
               +++   S   Y   G  + M G   EA      A  + 
Sbjct: 300 INTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.9 bits (118), Expect = 6e-08
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G  DEAIE   +A+ L+P+ A  +    + Y K    + AI     ALE++P++A+  + 
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82

Query: 191 RGMAHAMLG 199
            G A    G
Sbjct: 83  LGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 147 LNPS--AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEA 204
           ++P   A  +    + Y K    + AI     ALE++P++A+ +   G A+   G ++EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 205 V 205
           +
Sbjct: 63  I 63

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 20/144 (13%), Positives = 34/144 (23%), Gaps = 28/144 (19%)

Query: 129 ISEGKLDEAIELSTEAIMLNPSAI---MYATRASVYIKMKKPNAAIRDATAALEINPDSA 185
           +   +LD A +   +    +  A    +     S+    +K   A        +    + 
Sbjct: 141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 200

Query: 186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD----------------------EEIAAV 223
                +   H   G WE A   L  A   D                            + 
Sbjct: 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260

Query: 224 LKKVEPN---ALRIEEHRRKYDRL 244
           LK    +             +DRL
Sbjct: 261 LKDAHRSHPFIKEYRAKENDFDRL 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 42/348 (12%), Positives = 89/348 (25%), Gaps = 102/348 (29%)

Query: 4   EKVKELKQFIDQCKSNP------------SILADPSLSFFR------------------- 32
           +   +L+Q + + +               + +A      ++                   
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 33  -----DYLESLHAKVPTDAYKEGKSEPRASVVEESEEEEQRVEVEEKEEEEDEIVESDIE 87
                + L+ L  ++  +            +   S + E R  ++ K  E   +V  +++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 88  LEGDIVEA-DNDPPQ-KM----GDSSAEVTDEKREAAAEAKAKAMEAISEG-KLDEAIE- 139
                  A +      K+          VTD    +AA     +++  S     DE    
Sbjct: 255 -NAKAWNAFNL---SCKILLTTRFKQ--VTD--FLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 140 -----------LSTEAIMLNPSAI-MYATRASV---------YIKMKKPNAAIRDATAAL 178
                      L  E +  NP  + + A              ++   K    I  +   L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 179 EINPDSAKG-YKTRGMAHAMLGHWEEAVHDLHVASKI----------DFDEEIAAVLKK- 226
           E  P   +  +         L  +       H+ + +               +   L K 
Sbjct: 367 E--PAEYRKMFD-------RLSVFPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 227 --VE--PNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEK 270
             VE  P    I      Y  L+ + E        +         ++ 
Sbjct: 415 SLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDS 461

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 44/268 (16%), Positives = 83/268 (30%), Gaps = 87/268 (32%)

Query: 31  FRDYLESLHAKVPTDAYKEGKSEPRASVVEESEEEEQRVEVEEKEEEEDEIVESDIELEG 90
           ++D L      V  DA+ +          ++ ++  + +     +EE D I+ S   + G
Sbjct: 18  YKDILS-----VFEDAFVDNFD------CKDVQDMPKSIL---SKEEIDHIIMSKDAVSG 63

Query: 91  -----DIVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAI 145
                  +                    K+E   +   + +  I+   L   I   TE  
Sbjct: 64  TLRLFWTLL------------------SKQEEMVQKFVEEVLRINYKFLMSPI--KTEQR 103

Query: 146 MLNPSAIMYATR-------ASVYIKM----KKPNAAIRDATAALEINPDSAKGYKTRGMA 194
             +    MY  +         V+ K      +P   +R   A LE+ P        + + 
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELRPA-------KNVL 154

Query: 195 -HAMLG---HW--EEAVHDLHVASKIDF------------DEEIAAVLKK----VEPNAL 232
              +LG    W   +      V  K+DF             E +  +L+K    ++PN  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 233 RIEEHRRKYDRLRREREERKVERERLRR 260
              +H      ++         +  LRR
Sbjct: 215 SRSDH---SSNIKLRIHS---IQAELRR 236

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 101 QKMGDSSAEVTDEKREAAAEAK-AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRA 158
             MGD +   TD+ R+ A +A     +  +  G  ++A     +A+ ++P SA  +A  A
Sbjct: 19  SHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA 78

Query: 159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE 218
            V+    +P  A  +   AL  +  +A+     G        +EEA   L  AS+     
Sbjct: 79  VVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138

Query: 219 EIAAVL 224
           E + V 
Sbjct: 139 ERSRVF 144

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 132 GKLDEAIELSTEAI--MLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188
            + +EA +   EA    L P  + ++     V ++MKKP  A      +L +N +     
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178

Query: 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFD 217
                       +  A     + ++    
Sbjct: 179 LEMADLLYKEREYVPARQYYDLFAQGGGQ 207

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
            K  +A E   +++ LN +   +    A +  K ++   A +      +    +A+    
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLL 214

Query: 191 RGMAHAMLGHWEEA 204
                 +    + A
Sbjct: 215 GIRLAKVFEDRDTA 228

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 2/77 (2%)

Query: 129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG 187
           +  G          +       +   Y      Y++      A      ALEI+P SA  
Sbjct: 15  VPRGSHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADA 73

Query: 188 YKTRGMAHAMLGHWEEA 204
           +    +        + A
Sbjct: 74  HAALAVVFQTEMEPKLA 90

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 113 EKREAAAEAKAK-AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAA 170
           EK    +  K + AME +      +A     +A+  +P + + +  RA +Y  +K  + A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 171 IRDATAALEINPDSAKGYKTRGMA-HAMLGHWEEAVHDLHVASKIDFDEEIAAVL 224
                 AL I PDSA+     G      L    E++     A             
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 19/145 (13%), Positives = 37/145 (25%), Gaps = 31/145 (21%)

Query: 132 GKLDEAIELSTEAI--MLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY 188
            +  E++    +A+     P+  I    +     K  +   A      +L   P     +
Sbjct: 91  NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF 150

Query: 189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRRER 248
           K       + G   +A +            +   +L        +I              
Sbjct: 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL-----LGWKIA------------- 192

Query: 249 EERKVERERLRRRAEAQAAYEKAKK 273
                     +    AQAAYE   +
Sbjct: 193 ----------KALGNAQAAYEYEAQ 207

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 24/216 (11%), Positives = 68/216 (31%), Gaps = 30/216 (13%)

Query: 45  DAYKEGKSEPRASVVEESEEEEQRVEVEEKEEEEDEIVESDIELEGDIVEADNDPPQKMG 104
           +  +  +  P+       ++ ++ +  E  E     + +  + L+        D  +   
Sbjct: 15  EPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAEWAD 74

Query: 105 DSSAEVTDEKREAAA----EAKAKAMEAI-----SEGKLDEAIELSTEAIMLNPS-AIMY 154
                  D           +      +        + + + A +L+ +AI LN +   ++
Sbjct: 75  IDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVW 134

Query: 155 ATRASVYIKMKKP-NAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213
             R  +   ++K  +  +   TA +E  P + + +  R +    L    + +  +     
Sbjct: 135 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN 194

Query: 214 ID-------------------FDEEIAAVLKKVEPN 230
            D                   +D E+  V + ++ +
Sbjct: 195 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 230

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 46.6 bits (110), Expect = 7e-06
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 134 LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
           L E +   T  I   P +  ++  R  +   ++ P+  +      L  +  +   ++ R 
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 193 MAHAMLGHWEEAVHDLHVASKIDFD 217
                   W+  +  +    K D  
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVR 232

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 334 PGGGPGNV-----DFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQH-QANPKVAPI 387
           P  G   +         +  +P+      DP+++A L    +NP  + Q    +P++  I
Sbjct: 2   PDLGLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTI 61

Query: 388 IAKMM 392
           +A +M
Sbjct: 62  MATLM 66

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 250 ERKVERERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGM 309
             +V +E L +  +  A+    K+EEQ++ ++ P         +  G    +P       
Sbjct: 548 FIQVMKEYLTKVDKLDASESLRKEEEQATETQ-PIVYGQPQLMLTAGPSVAVPP------ 600

Query: 310 PGGFPGGMPGGFPGGMPGGFPGGM 333
              F  G      G    GF   M
Sbjct: 601 QAPFGYGYTAPAYGQPQPGFGYSM 624

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 18/57 (31%), Positives = 18/57 (31%)

Query: 283 PGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPG 339
           P   P G GG P     G P     G P G    M          G P GMP  G  
Sbjct: 165 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMR 221

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 16/60 (26%), Positives = 17/60 (28%)

Query: 282 RPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGNV 341
            P G  G    M  G P     G P GM       M      G P G P       P  +
Sbjct: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 21/63 (33%)

Query: 276 QSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPG 335
            ++++    G P       GG P  M  G P     G P GM       M      G P 
Sbjct: 154 AAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPM 213

Query: 336 GGP 338
           G P
Sbjct: 214 GMP 216

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 22/64 (34%)

Query: 276 QSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPG 335
           Q   + +  G    A         G P  +P G  G  P    G  P GM G  PG  P 
Sbjct: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198

Query: 336 GGPG 339
            GP 
Sbjct: 199 MGPP 202

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 14/58 (24%), Positives = 14/58 (24%)

Query: 283 PGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGN 340
                 G              G P   P G  G  P    G  P G  G  PG  P  
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPM 199

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 14/57 (24%), Positives = 16/57 (28%)

Query: 283 PGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPG 339
              +    G                G P  +P G  G  P    G  P GM G  PG
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPG 194

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 13/57 (22%), Positives = 13/57 (22%)

Query: 283 PGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPG 339
            GG         G                G P   P G  G  P    G  P G  G
Sbjct: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMG 190

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 10/59 (16%)

Query: 282 RPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGN 340
                   A                GG P     G P     G P G    M       
Sbjct: 148 GTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIP 206

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 15/59 (25%), Positives = 17/59 (28%), Gaps = 2/59 (3%)

Query: 283 PGGMPGGAGGMPGGFPGGM--PGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPG 339
           P G+ G   G+ G     M   G                G P   P G  G  P  G G
Sbjct: 124 PAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 148 NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVH 206
           +P         A  ++K    + A+      +E +PD    Y   G  +  L   ++A+ 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 207 DLHVASKID---FDEEIAAVLKKVEPNALRIEEHRRKY 241
                 ++      ++  + L+  +  A  +E H   +
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 125 AMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
           A E +       A+ L  E +  +P     Y     +Y ++ + + AI      +E+  +
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

Query: 184 SAKGYKTRGMAHA 196
                    +  A
Sbjct: 74  EGTQKDLSELQDA 86

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 2/109 (1%)

Query: 276 QSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPG 335
              +   P G  G      GG+     GG+     GG+     GG+     GG  G    
Sbjct: 25  PGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGT 84

Query: 336 GGPGNVDFSKILNDPELMAAFSDPEVMAALQDVM--KNPANLAQHQANP 382
            G  N       N   +  A +   V+  L   M     +    H  + 
Sbjct: 85  HGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSD 133

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 20/58 (34%)

Query: 283 PGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGN 340
             G         GG+     GG+     GG+     GG+     GG+     GGG G 
Sbjct: 24  SPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQ 81

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 18/58 (31%)

Query: 283 PGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGFPGGMPGGGPGN 340
               PG        +P    GG+     GG+     GG+     GG+     GG    
Sbjct: 16  GSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 73

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 255 RERLRRRAEAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMPGGFP 314
            ++   + E Q+   +   +    S E   G PGG+        G   G FPG +PGG  
Sbjct: 148 NKQFLSQFEMQS---RKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDR 204

Query: 315 GGMPGGFPGGMPGGFPGGMPGGGP 338
              P G PGG P  FP G      
Sbjct: 205 FPGPAG-PGGPPPPFPAGQTHHHH 227

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 260 RRAEAQAAYEKAKKEEQSSSSERPGGMPGGAGGMPGGFPGGMPGGFPGGMP--GGFPGGM 317
           +        ++   + +  S +          G  G   G     FP G    G FPG +
Sbjct: 140 QNPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAV 199

Query: 318 PGG--FPGGMPGGFP--GGMPGGGPGN 340
           PGG  FPG    G P      G    +
Sbjct: 200 PGGDRFPGPAGPGGPPPPFPAGQTHHH 226

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 3/143 (2%)

Query: 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           T+    +   +   A+     A++ +P  A    +      + G +E A   L  + K+ 
Sbjct: 2   TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61

Query: 216 FDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEE 275
            +    A   +   + ++  + R+ + +     +      E  +       +      E+
Sbjct: 62  PEYLPGASQLR---HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ 118

Query: 276 QSSSSERPGGMPGGAGGMPGGFP 298
            S  + +   +    G +     
Sbjct: 119 VSELALQIEELRQEKGFLANDTS 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.8
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.66
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.66
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.61
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.6
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.57
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.56
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.55
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.55
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.55
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.52
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.47
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.47
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.46
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.44
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.44
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.41
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.41
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.39
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.39
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.38
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.38
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.37
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.37
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.35
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.34
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.34
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.34
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.34
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.33
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.33
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.32
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.32
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.32
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.32
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.29
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.28
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.28
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.27
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.27
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.27
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.25
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.25
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.23
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.23
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.22
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.21
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.18
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.1
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.1
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.03
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.03
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.03
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.03
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.02
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.01
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.01
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.01
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.99
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.99
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.98
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.96
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.95
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.95
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.95
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.93
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.92
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.92
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.91
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.89
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.89
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.89
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.89
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.87
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.87
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.85
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.85
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.84
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.84
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.83
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.82
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.79
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.77
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.76
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.72
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.72
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.71
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.68
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.66
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.61
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.42
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.41
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.38
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.34
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.3
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.27
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.21
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.18
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.1
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.03
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.01
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.98
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.96
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.69
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.65
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.64
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.63
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.52
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.47
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.43
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.34
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.31
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.29
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.14
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.14
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.53
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.32
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.24
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.74
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.69
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.5
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.35
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	94.72
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.6
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.89
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.8
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.7
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.25
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.22
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	91.97
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	91.75
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.4
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.23
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	89.06
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	87.8
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.74
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.84
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	85.6
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	85.02
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	84.89
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	84.87
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	84.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	84.72
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	84.51
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.66
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	83.64
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	83.34
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	81.52
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	81.44
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	81.15
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	80.63

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=6.3e-20  Score=153.71  Aligned_cols=105  Identities=26%  Similarity=0.408  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      .+.++.++++|+.+++.|+|++|+.+|++||+++| ++.+|.++|.||+++++|++|+.+|++||+++|+++.+|+++|.
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~   89 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            46788999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|..+|+|++|+.+|+++++++|++.
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            99999999999999999999999984

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.80  E-value=1.2e-18  Score=150.69  Aligned_cols=109  Identities=18%  Similarity=0.229  Sum_probs=102.1

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CC-CHHHHHHHHHHHHHcCCHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML------------------NP-SAIMYATRASVYIKMKKPNAAI  171 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l------------------~P-~a~~~~nra~a~~~l~~~~~Ai  171 (399)
                      +++.+..+..++.+|+.+++.|+|.+|+..|++||.+                  +| ++.+|+|+|.||+++++|..|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4556778999999999999999999999999999999                  77 7899999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       172 ~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            999999999999999999999999999999999999999999999984

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.79  E-value=2e-18  Score=144.50  Aligned_cols=112  Identities=23%  Similarity=0.252  Sum_probs=103.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-------  184 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-------  184 (399)
                      ...+.|..+++.|+.+++.|+|++|+.+|++||.++| ++.+|.++|.||+.+++|++|+.+|++||+++|++       
T Consensus         3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            3467889999999999999999999999999999999 99999999999999999999999999999998876       


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHH
Q 044737          185 AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVL  224 (399)
Q Consensus       185 ~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~l  224 (399)
                      +++|+++|.++..+++|++|+..|+++++++|+..+...|
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l  122 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence            4689999999999999999999999999999987643333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=1.2e-18  Score=152.07  Aligned_cols=104  Identities=23%  Similarity=0.221  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------------AIMYATRASVYIKMKKPNAAIRDATAALEI-  180 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-  180 (399)
                      ...+..++..|+.+++.|+|++|+..|++||+++| +            +.+|+|+|.|+.++|+|++|+.+|++||++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            56788999999999999999999999999999998 4            349999999999999999999999999999 


Q ss_pred             ------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          181 ------NPDSAKGY----KTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       181 ------~p~~~~a~----~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                            +|+++++|    +++|.++..+|+|++|+.+|++|++++|++
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                  99999999    999999999999999999999999999987

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=4.1e-17  Score=134.64  Aligned_cols=103  Identities=25%  Similarity=0.330  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..++.+|..++..|+|++|+..|+++|.++| ++.+|.++|.||+++++|++|+.+|+++++++|+++.+|+++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3578899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhC------CcH
Q 044737          195 HAMLGHWEEAVHDLHVASKID------FDE  218 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ld------p~~  218 (399)
                      +..+|++++|+.+|+++++++      |++
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~  111 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSA  111 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhH
Confidence            999999999999999999999      776

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.75  E-value=3.7e-17  Score=141.71  Aligned_cols=107  Identities=12%  Similarity=0.047  Sum_probs=102.9

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      -..+.+..+...|..+++.|+|++|+..|.+++.++| ++.+|.++|.||..+|+|++|+..|++|++++|+++.+|+++
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            3456677899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |.+|..+|++++|+..|+++++++|++.
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999985

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.72  E-value=1.2e-16  Score=138.36  Aligned_cols=105  Identities=20%  Similarity=0.311  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...+..+...|..++..|+|++|+.+|+++|.++| +..+|+++|.||+.+++|++|+.+|+++|+++|+++.+|+++|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45678999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|..+|+|++|+.+|+++++++|++.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCch
Confidence            99999999999999999999999984

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=5.7e-16  Score=131.18  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      .+.+..+...|..++..|+|++|+..|.+++.++| ++.+|.++|.||..+++|++|+..|++++.++|+++.+|+++|.
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   94 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            44567889999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|..+|++++|+..|+++++++|++.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999763

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.68  E-value=1.8e-15  Score=147.45  Aligned_cols=124  Identities=22%  Similarity=0.247  Sum_probs=111.7

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---------------AIMYATRASVYIKMKKPNAAIRDA  174 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---------------a~~~~nra~a~~~l~~~~~Ai~d~  174 (399)
                      .+.....+..++.+|+.+++.|+|++|+..|.+||.++| +               +.+|.++|.||+++++|++|+.+|
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  219 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            355677889999999999999999999999999999999 6               799999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhH
Q 044737          175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRI  234 (399)
Q Consensus       175 ~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~  234 (399)
                      ++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++ .+...+..+...+++.
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 4445555554444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=7.7e-16  Score=132.18  Aligned_cols=105  Identities=11%  Similarity=0.095  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...+..+...|..++..|+|++|+..|.+++.++| ++.+|.++|.||..+|+|++|+..|++++.++|+++.+|+++|.
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   97 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            45677889999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|..+|++++|+..|+++++++|++.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            99999999999999999999999863

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.67  E-value=1.3e-15  Score=154.82  Aligned_cols=122  Identities=20%  Similarity=0.249  Sum_probs=108.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 044737          112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---------------AIMYATRASVYIKMKKPNAAIRDAT  175 (399)
Q Consensus       112 ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---------------a~~~~nra~a~~~l~~~~~Ai~d~~  175 (399)
                      +.....+..++.+|+.+++.++|.+|+.+|.+||.++| +               +.+|+|+|.||+++++|.+|+.+|+
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            56678899999999999999999999999999999999 6               7999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHh
Q 044737          176 AALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALR  233 (399)
Q Consensus       176 ~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k  233 (399)
                      +||+++|+++++|+++|.+|..+++|++|+.+|++|++++|++ .+...+..+...+++
T Consensus       342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 344455555444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.66  E-value=1.2e-15  Score=131.10  Aligned_cols=105  Identities=11%  Similarity=-0.027  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      .+.+..+...|..|++.|+|++|+..|+++|+++| ++.+|.++|.+|..++++++|+..|+++|+++|+++.+|+++|.
T Consensus        28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  107 (150)
T 4ga2_A           28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE  107 (150)
T ss_dssp             HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556778899999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHH-HHHHHhhCCcHH
Q 044737          194 AHAMLGHWEEAVHD-LHVASKIDFDEE  219 (399)
Q Consensus       194 a~~~lg~~eeA~~~-l~~Al~ldp~~~  219 (399)
                      +|..++++++|+.. +++|++++|++.
T Consensus       108 ~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A          108 LLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            99999999887776 599999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.66  E-value=2.5e-15  Score=124.69  Aligned_cols=101  Identities=30%  Similarity=0.399  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|+.+++|+.|+..|.++++++|+++.+|+++|.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            356889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCc
Q 044737          196 AMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      ..+|++++|+..|+++++++|+
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHChh
Confidence            9999999999999999999987

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.66  E-value=3.3e-15  Score=133.14  Aligned_cols=118  Identities=25%  Similarity=0.263  Sum_probs=107.6

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH----------------HHHHHHHHHHHHcCCHHHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA----------------IMYATRASVYIKMKKPNAAIRD  173 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a----------------~~~~nra~a~~~l~~~~~Ai~d  173 (399)
                      .++....+..++..|+.++..++|++|+..|.+++.+.| +.                .+|.++|.||+.+++|++|+.+
T Consensus        31 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  110 (198)
T 2fbn_A           31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH  110 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            456677889999999999999999999999999999999 65                8999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHh
Q 044737          174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVE  228 (399)
Q Consensus       174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~  228 (399)
                      |++++.++|+++.+|+++|.+|..+|+|++|+..|+++++++|++. +...+..+.
T Consensus       111 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A          111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999883 344444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.64  E-value=3.8e-15  Score=147.41  Aligned_cols=117  Identities=24%  Similarity=0.278  Sum_probs=107.5

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIM----------------LNP-SAIMYATRASVYIKMKKPNAAIRD  173 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~----------------l~P-~a~~~~nra~a~~~l~~~~~Ai~d  173 (399)
                      .++....+..++..|+.+++.++|++|+..|++||+                ++| .+.+|.++|.||+++++|++|+.+
T Consensus       216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            456677889999999999999999999999999999                788 899999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHH
Q 044737          174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKV  227 (399)
Q Consensus       174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v  227 (399)
                      |++||+++|+++++|+++|.+|..+++|++|+.+|++|++++|++. +...+..+
T Consensus       296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~  350 (370)
T 1ihg_A          296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  350 (370)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999873 33444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=4.2e-14  Score=120.40  Aligned_cols=109  Identities=29%  Similarity=0.461  Sum_probs=104.8

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      .......+..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..+++|++|+..+.++++++|+++.+|+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   85 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   85 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            455677899999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          190 TRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       190 ~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|.++..+|++++|+..|+++++++|++.
T Consensus        86 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           86 RRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999874

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=99.63  E-value=2e-16  Score=115.96  Aligned_cols=57  Identities=33%  Similarity=0.557  Sum_probs=55.0

Q ss_pred             chhccCCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHHhcCCC
Q 044737          342 DFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGP  398 (399)
Q Consensus       342 ~~~~~~~dpe~~~~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~~~~~~  398 (399)
                      .++++++||+|+.+|+||+|++++++|++||+++++||+||+|+++|++|++.|||-
T Consensus         4 ~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~   60 (62)
T 2lnm_A            4 VISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGM   60 (62)
T ss_dssp             HHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCC
Confidence            468999999999999999999999999999999999999999999999999999985

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=3.8e-15  Score=148.15  Aligned_cols=133  Identities=14%  Similarity=0.081  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~-~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      ..+.+..+..+|..+...|+|++|+.+|+++|.++| +..+|++||.+|..+++ +++|+.+|++||+++|++..+|+++
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            345677899999999999999999999999999999 99999999999999997 9999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          192 GMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       192 g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      |.++..+|++++|+.+|++|++++|++ .++..+..+...++++.++...|++.-.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~  228 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  228 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            999999999999999999999999998 5677777777777777777776665544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=7.9e-15  Score=157.18  Aligned_cols=132  Identities=20%  Similarity=0.194  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      .+.+..+.+.|+.+.+.|+|++|+.+|++||+++| ++.+|+|+|.+|.++|++++|+..|++||+++|+++.+|+++|.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34567788888888888888888888888888888 88888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +|..+|++++|+..|++|++++|++ .++..+..+...++++.++...|++.-+
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888888888888888888877 4566677777777777777666655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.61  E-value=7.5e-15  Score=133.47  Aligned_cols=128  Identities=17%  Similarity=0.137  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|+|++|+..|+++|.++| ++.+|.++|.+|..+|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV   84 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45778899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hc-----------CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          197 ML-----------GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       197 ~l-----------g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      .+           |++++|+..|+++++++|++ .++..+..+....++..+....|++.-
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  145 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL  145 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            99           99999999999999999987 556677777777777777666665543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.61  E-value=7.1e-14  Score=126.13  Aligned_cols=110  Identities=19%  Similarity=0.173  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYAT----------------RASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~n----------------ra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      +..+..+|..++..|+|++|+.+|+++|.++| ++.+|++                +|.+|.++|+|++|+..|+++|++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999 9999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          181 NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       181 ~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                      +|+++.+|+++|.+|..+|++++|+.+|+++++++|++ .++..+..+
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999998 444455544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=6.7e-15  Score=121.88  Aligned_cols=100  Identities=13%  Similarity=0.048  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      .+...|..++..|+|++|+..|.++|.++| ++.+|+++|.+|..+|++.+|+..|++|++++|+++.+|+.+|.+|..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            367889999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcHH
Q 044737          199 GHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |++++|+..|+++++++|++.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            999999999999999999863

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.60  E-value=1.9e-15  Score=147.50  Aligned_cols=116  Identities=28%  Similarity=0.284  Sum_probs=99.0

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH-----------------HHHHHHHHHHHHcCCHHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA-----------------IMYATRASVYIKMKKPNAAIR  172 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a-----------------~~~~nra~a~~~l~~~~~Ai~  172 (399)
                      .++....+..++.+|+.+++.++|.+|+.+|.+||.++| +.                 .+|+|+|.||+++++|.+|+.
T Consensus       172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            466788899999999999999999999999999999999 66                 499999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHH
Q 044737          173 DATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKK  226 (399)
Q Consensus       173 d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~  226 (399)
                      +|+++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++. +...|..
T Consensus       252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~  306 (338)
T 2if4_A          252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA  306 (338)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999883 3333433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.60  E-value=4.1e-14  Score=112.79  Aligned_cols=104  Identities=30%  Similarity=0.496  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      +.+..+...|..++..|+|++|+..|.+++.++| +..++.++|.+|..+++|++|+..+.+++.++|+++.+|+.+|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            3567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +..+|++++|+..|+++++++|++.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999999999874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.58  E-value=2e-13  Score=119.24  Aligned_cols=130  Identities=17%  Similarity=0.189  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+...|+.++..|+|++|+..|+++|+++| ++.+|.++|.+|.++++++.|+..+.+++..+|+++.++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            356788999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ...++++.|+..+.++++++|++ .+...+..+....++..++...|++.-+
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~  135 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS  135 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            99999999999999999999987 5566677777777777777766665444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.58  E-value=8.7e-14  Score=137.84  Aligned_cols=162  Identities=20%  Similarity=0.280  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ..+...|..++..|+|++|+..|.+++.++| +    ..+|.++|.+|.++|++++|+..|++++.++|+++.+|+.+|.
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  337 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE  337 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4445669999999999999999999999999 6    5589999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHh-----------------HHHHHHHHHHHHHH--------
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALR-----------------IEEHRRKYDRLRRE--------  247 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k-----------------~~e~~~~ye~l~~~--------  247 (399)
                      ++..+|++++|+..|+++++++|++ .+...+..+...+++                 ..+.++.|+++...        
T Consensus       338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~  417 (450)
T 2y4t_A          338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN  417 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999998 455566655433322                 12334455543321        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737          248 REERKVERERLRRRAEAQAAYEKAKKEEQSSSS  280 (399)
Q Consensus       248 ~e~kk~~~er~~~~~~A~~~~~~~~k~~~~d~g  280 (399)
                      .+.++..+++++++.+|.+++.++++|..||+|
T Consensus       418 ~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          418 EEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            233566778999999999999999999999976

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.58  E-value=5.2e-14  Score=114.31  Aligned_cols=113  Identities=19%  Similarity=0.234  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-------AKG  187 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-------~~a  187 (399)
                      +.+..+...|..++..|+|++|+..|.+++.++| +..++.++|.+|..+++|++|+..|.+++.++|++       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3567889999999999999999999999999999 99999999999999999999999999999999887       999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHHh
Q 044737          188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVE  228 (399)
Q Consensus       188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~  228 (399)
                      |+++|.++..+|++++|+..|+++++++|+..+...+..+.
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  122 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999765555554443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.58  E-value=1.1e-13  Score=112.28  Aligned_cols=108  Identities=30%  Similarity=0.438  Sum_probs=102.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       112 ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      +.....+..+...|..++..++|++|+..|.+++.++| +..+|.++|.+|..++++++|+..+.+++.++|+++.+|+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34456788999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.++..++++++|+..|+++++++|++.
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNE  114 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence            99999999999999999999999999873

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.57  E-value=6e-14  Score=114.70  Aligned_cols=110  Identities=27%  Similarity=0.400  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+...|..++..++|++|+..|.+++.++| +..+|.++|.+|..++++++|+..|+++++++|+++.+|+.+|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            456889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKK  226 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~  226 (399)
                      ..+|++++|+..|+++++++|++ .+...+..
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  126 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQR  126 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            99999999999999999999987 33333333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.57  E-value=3e-14  Score=152.67  Aligned_cols=129  Identities=24%  Similarity=0.225  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+.+.|+.+++.|+|++|+..|++||+++| ++.+|+++|.+|..+|++++|+..|++||+++|+++.+|+++|.+|.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      .+|++++|+..|++|++++|++ .+...|..+...+.++.++...|+++..
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            9999999999999999999998 5566677777666666666666655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=8.6e-14  Score=126.42  Aligned_cols=128  Identities=21%  Similarity=0.239  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM-----------KKPNAAIRDATAALEINPDSA  185 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l-----------~~~~~Ai~d~~~Al~l~p~~~  185 (399)
                      +..+...|..++..|++++|+..|.+++.++| +..+|.++|.+|..+           |++++|+..++++++++|+++
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            45788999999999999999999999999999 999999999999999           999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      .+|+.+|.++..+|++++|+..|+++++++ ++ .+...+..+....++..+....|++.-.
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  179 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALE  179 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 65 5566777777777777777766665443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=6.3e-14  Score=116.94  Aligned_cols=103  Identities=22%  Similarity=0.310  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      .+..+...|..++..++|++|+..|++++.++| +   ..+|.++|.+|+.+++|++|+..|++++.++|+++.+|+++|
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            356789999999999999999999999999999 6   899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|..++++++|+..|+++++++|++.
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            999999999999999999999999873

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.55  E-value=3.6e-15  Score=128.01  Aligned_cols=112  Identities=10%  Similarity=0.050  Sum_probs=98.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWE  202 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~e  202 (399)
                      .|..+...+++++||..|.+++..+| +...++++|.+|+++++|++|+..|+++|+++|+++.+|+.+|.+|..+|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            46777788999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHH
Q 044737          203 EAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIE  235 (399)
Q Consensus       203 eA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~  235 (399)
                      +|+..|+++++++|++ .+...+..+....++..
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence            9999999999999998 45555666555544443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.55  E-value=1.5e-13  Score=124.49  Aligned_cols=101  Identities=17%  Similarity=0.096  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ..+..+|..++..|+|++|+..|+++|.++|  +..+++++|.||..+++|++|+..|+++++++|+++.+|+.+|.+|.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            6789999999999999999999999999997  88999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|++++|+..|+++++++|++.
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcH
Confidence            99999999999999999999874

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.55  E-value=1.8e-13  Score=123.43  Aligned_cols=78  Identities=14%  Similarity=0.087  Sum_probs=73.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      ...|..++..|+|++|+..|+++|+++| +..+|.++|.+|+.+|++++|+..|+++|+++|+++.+|+++|.+|+..+
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            3499999999999999999999999999 99999999999999999999999999999999999999999998876554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.54  E-value=1.2e-13  Score=113.27  Aligned_cols=100  Identities=20%  Similarity=0.171  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRG  192 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g  192 (399)
                      .+...|..++..|+|++|+..|.+++..+| +.   .+++++|.+|+.+++|++|+..|++++.++|++   +.+++++|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            467889999999999999999999999999 65   799999999999999999999999999999999   89999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .++..+|++++|+..|++++++.|++.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            999999999999999999999999875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=4.4e-13  Score=121.33  Aligned_cols=110  Identities=22%  Similarity=0.174  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-------KGYKT  190 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-------~a~~~  190 (399)
                      ..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..++++++|+..|+++++++|+++       .+|+.
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  122 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK  122 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            3566799999999999999999999999999 999999999999999999999999999999999998       77999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCc--H-HHHHHHHHHh
Q 044737          191 RGMAHAMLGHWEEAVHDLHVASKIDFD--E-EIAAVLKKVE  228 (399)
Q Consensus       191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~--~-~~~~~lk~v~  228 (399)
                      +|.++..+|++++|+..|+++++++|+  + .+...+..+.
T Consensus       123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A          123 EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            999999999999999999999999999  6 3444455544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.52  E-value=6.5e-14  Score=139.29  Aligned_cols=113  Identities=14%  Similarity=0.135  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGK-LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~-~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      +..|..+|..+...|+ |++|+.+|+++|.++| +..+|++||.+|..+++|++|+.+|++||+++|++..+|+++|.++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~  210 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence            5678899999999997 9999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPN  230 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~  230 (399)
                      ..+|+|++|+.+|+++++++|++ .++..+..+...
T Consensus       211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998 555555555444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.52  E-value=3.3e-14  Score=123.69  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=84.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          130 SEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKP----------NAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       130 ~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~----------~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      +.+.|++|+..|.++|+++| ++.+|+++|.++..++++          ++|+..|++||+++|+++.+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            44678999999999999999 999999999999999875          5999999999999999999999999999988


Q ss_pred             C-----------CHHHHHHHHHHHHhhCCcHH
Q 044737          199 G-----------HWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       199 g-----------~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |           +|++|+.+|++|++++|++.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            5           89999999999999999985

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.51  E-value=1.1e-13  Score=131.20  Aligned_cols=101  Identities=30%  Similarity=0.401  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..++..|+.++..|+|++|+..|+++|.++| ++.+|+++|.+|+++++|++|+.+|++|++++|+++.+|+++|.+|.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+|+|++|+..|+++++++|++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.49  E-value=1.8e-12  Score=113.11  Aligned_cols=127  Identities=17%  Similarity=0.153  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|++++|+..+.+++..+| ...++.++|.++...+++..|+..+.+++.++|++..+++.+|.+|.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            45788999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      .+|+|++|+..|+++++++|++ .++..+..+....++..++...|++.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999998 55667777777777766666665543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.48  E-value=2.5e-12  Score=103.13  Aligned_cols=102  Identities=26%  Similarity=0.334  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..++|++|+..|.+++..+| +..++.++|.+|...+++++|+..+.+++.++|+++.+|+.+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            56788999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .++++++|+..|+++++++|++.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNA  111 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcH
Confidence            99999999999999999999874

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.47  E-value=4.3e-13  Score=105.96  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SAKGYKTRGMAHA  196 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g~a~~  196 (399)
                      .+...|..++..++|++|+..|.+++.++| +..+|.++|.+|+.+++|++|+..++++++++|+  +..+|+.+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            456789999999999999999999999999 9999999999999999999999999999999999  9999999999999


Q ss_pred             hc-CCHHHHHHHHHHHHhhCCcH
Q 044737          197 ML-GHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       197 ~l-g~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+ |++++|+..+++++..+|++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           88 YIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHhCCHHHHHHHHHHHhhcccCC
Confidence            99 99999999999999999874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.47  E-value=1.3e-13  Score=119.36  Aligned_cols=109  Identities=5%  Similarity=-0.149  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          138 IELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       138 i~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      -..|.+++.++| +..+|+++|.+++++|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|
T Consensus        22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence            356788899999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          217 DE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       217 ~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ++ .++..+..+...+++..++...|++.-.
T Consensus       102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            98 6677888888888888888888877655

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.7e-14  Score=107.79  Aligned_cols=53  Identities=34%  Similarity=0.607  Sum_probs=50.5

Q ss_pred             chhccCCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHHh
Q 044737          342 DFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAK  394 (399)
Q Consensus       342 ~~~~~~~dpe~~~~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~~  394 (399)
                      .+.++|+||||+++|+||+|+.++++|++||+++++||+||+|+++|+||++.
T Consensus        12 ~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~a   64 (71)
T 2llw_A           12 TYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAA   64 (71)
T ss_dssp             HHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred             HHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence            56889999999999999999999999999999999999999999999999764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.46  E-value=3.9e-12  Score=116.93  Aligned_cols=105  Identities=19%  Similarity=0.104  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..+++|++|+..|+++++++|+++.+|+.+|.+
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  120 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence            4577889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDEEI  220 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~~~  220 (399)
                      |..+|++++|+..|+++++++|++..
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~~~~~~  146 (275)
T 1xnf_A          121 LYYGGRDKLAQDDLLAFYQDDPNDPF  146 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999999999999853

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.44  E-value=2.8e-12  Score=114.24  Aligned_cols=128  Identities=14%  Similarity=0.105  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      ..+..+...|..++..|+|++|+..|.+++  +|++.+|.++|.+|+.+++|++|+..|++++.++|+++.+|+++|.+|
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            456678899999999999999999999995  448899999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH-----------------HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE-----------------EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~-----------------~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      ..+|+|++|+.+|++++++.|++                 .+...+..+....++..++...|++..
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999999999999999988764                 334555555556666666665555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.44  E-value=2.8e-12  Score=111.47  Aligned_cols=102  Identities=12%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASV-YIKMKKP--NAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a-~~~l~~~--~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      +..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+ |+..+++  ++|+..++++++++|+++.+|+.+|.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  123 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS  123 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            46788999999999999999999999999999 99999999999 8899999  99999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|..+|++++|+..|+++++++|++.
T Consensus       124 ~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          124 DAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999873

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.44  E-value=1.6e-13  Score=111.98  Aligned_cols=90  Identities=19%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             HcCCHHHHHHHHHHHHHh---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737          130 SEGKLDEAIELSTEAIML---NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       130 ~~g~~~~Ai~~y~~Ai~l---~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      ..|+|++|+.+|.++|.+   +| +..+|.++|.+|+.+++|++|+..|+++++++|+++.+|+++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   58 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCcHH
Q 044737          206 HDLHVASKIDFDEE  219 (399)
Q Consensus       206 ~~l~~Al~ldp~~~  219 (399)
                      ..|++++.++|++.
T Consensus        82 ~~~~~al~~~p~~~   95 (117)
T 3k9i_A           82 ELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHCCCH
T ss_pred             HHHHHHHHhCCCcH
Confidence            99999999999885

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.44  E-value=7.3e-13  Score=110.39  Aligned_cols=104  Identities=17%  Similarity=0.188  Sum_probs=90.5

Q ss_pred             HHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HH
Q 044737          143 EAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EI  220 (399)
Q Consensus       143 ~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~  220 (399)
                      +...++| .+..|.++|.+|++.|+|++|+..|++||+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++ .+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            3445899 999999999999999999999999999999999999999999999999999999999999999999998 55


Q ss_pred             HHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          221 AAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       221 ~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +..+..+...+++..++...|++.-+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66777777777777777766655443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.43  E-value=1.4e-13  Score=140.60  Aligned_cols=112  Identities=28%  Similarity=0.445  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      +.+..+...|+.++..|+|++|+..|++||+++| ++.+|.++|.+|.++++|++|+.+|++|++++|+++.+|+++|.+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4566778889999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                      |..+|+|++|+..|+++++++|++ .+...+..+
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999987 444444444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.43  E-value=6.6e-12  Score=101.54  Aligned_cols=109  Identities=28%  Similarity=0.292  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+...|..++..|++++|+..|.+++..+| +..+|.+++.++...++++.|+..+.+++.++|.+..+|+.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            4577889999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                      .|++++|+..|++++++.|.+ .....+..+
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999999999999976 333334333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.42  E-value=1.2e-11  Score=106.05  Aligned_cols=119  Identities=19%  Similarity=0.223  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|++++|+..|.+++.++| +..++.++|.+|...+++++|+..+++++.++|+++.+|+.+|.++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  121 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence            34667788888888888888888888888888 88888888888888888888888888888888888888888888888


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEE  236 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e  236 (399)
                      .+|++++|+..|+++++++|++ .+...+..+....++..+
T Consensus       122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888888876 333344444333333333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=5.2e-12  Score=114.58  Aligned_cols=100  Identities=27%  Similarity=0.366  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..++++++|+..|+++++++|+++.+|+.+|.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA  216 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            3456777888888999999999999999999999 888899999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhC
Q 044737          195 HAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      +..+|++++|+..|+++++++
T Consensus       217 ~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          217 QIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999999888

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.41  E-value=2.3e-13  Score=108.31  Aligned_cols=94  Identities=18%  Similarity=0.235  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS------AKGYK  189 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~------~~a~~  189 (399)
                      .+..+...|..++..|+|++|+..|.+++.++| +..+|.++|.||+.+++|++|+.+|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467889999999999999999999999999999 99999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 044737          190 TRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       190 ~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      ++|.++..+|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999999888776554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.3e-11  Score=112.00  Aligned_cols=130  Identities=19%  Similarity=0.182  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCC-CHHHHHHHHHHHHHcCCHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIM--------------------------LNP-SAIMYATRASVYIKMKKPNA  169 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~--------------------------l~P-~a~~~~nra~a~~~l~~~~~  169 (399)
                      .+..+...|..++..|+|++|+..|.+++.                          ++| ...+|.++|.+|+.+++|++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            367888999999999999999999999999                          677 88999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       170 Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      |+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++ .+...+..+....++..++...|++...
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997 4566677776667776666666655433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=3.6e-12  Score=113.51  Aligned_cols=101  Identities=19%  Similarity=0.160  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-----------  185 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-----------  185 (399)
                      +..+...|..++..|+|++|+..|.+++.++| +..+|+++|.+|+.+++|++|+..|++++++.|.+.           
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  116 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  116 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence            35789999999999999999999999999999 999999999999999999999999999999888776           


Q ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          186 -----KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       186 -----~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                           .+|+++|.+|..+|++++|+..|+++++++|++
T Consensus       117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                 999999999999999999999999999999986

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.41  E-value=3.4e-12  Score=118.21  Aligned_cols=101  Identities=20%  Similarity=0.113  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKT  190 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~  190 (399)
                      +..+...|..++..|+|++|+..|.++|..+| +   ..+++++|.||+++++|.+|+..|+++|+++|++   +.+|++
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            56889999999999999999999999999999 7   8999999999999999999999999999998854   679999


Q ss_pred             HHHHHHh--------cCCHHHHHHHHHHHHhhCCcH
Q 044737          191 RGMAHAM--------LGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       191 ~g~a~~~--------lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +|.++..        +|++++|+..|+++++++|++
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            9999999        999999999999999999987

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=2.3e-11  Score=104.19  Aligned_cols=130  Identities=14%  Similarity=0.095  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..+...|..++..|++++|+..|.+++.++| +..++..+|.+|...+++++|+..+.++++++|++..+|+.+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3467788999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      +...+++++|+..|+++++++|++ .+...+..+....++..+....++...
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  137 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL  137 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            999999999999999999999987 445556666666666666666665543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.39  E-value=1.8e-11  Score=113.32  Aligned_cols=129  Identities=14%  Similarity=-0.017  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIK--------MKKPNAAIRDATAALEINPDSA  185 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~--------l~~~~~Ai~d~~~Al~l~p~~~  185 (399)
                      +..+...|..++..|+|++|+..|.++|.++|    ...+++++|.||+.        ++++.+|+..|+++++++|++.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            56789999999999999999999999999988    36789999999999        9999999999999999999986


Q ss_pred             HHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH----HHHHHHHHHhHHH----------HhH
Q 044737          186 KGY-----------------KTRGMAHAMLGHWEEAVHDLHVASKIDFDE----EIAAVLKKVEPNA----------LRI  234 (399)
Q Consensus       186 ~a~-----------------~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~----~~~~~lk~v~~~~----------~k~  234 (399)
                      .++                 +.+|.+|..+|+|++|+..|+++++..|++    .+...+..+...+          +++
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~  211 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY  211 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence            665                 889999999999999999999999999984    2344555555544          556


Q ss_pred             HHHHHHHHHHHH
Q 044737          235 EEHRRKYDRLRR  246 (399)
Q Consensus       235 ~e~~~~ye~l~~  246 (399)
                      .++...|+.+..
T Consensus       212 ~~A~~~~~~~~~  223 (261)
T 3qky_A          212 RRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666665544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.39  E-value=4.4e-12  Score=129.10  Aligned_cols=127  Identities=17%  Similarity=0.115  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKL-DEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~-~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      +..+..+|..++..++| ++|+.+|.++++++| ++.+|+++|.+|+.+++|++|+..|++|++++|+ ..+|+++|.+|
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~  180 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL  180 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence            56788999999999999 999999999999999 9999999999999999999999999999999999 79999999999


Q ss_pred             Hhc---------CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHH--------HhHHHHHHHHHHHH
Q 044737          196 AML---------GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNA--------LRIEEHRRKYDRLR  245 (399)
Q Consensus       196 ~~l---------g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~--------~k~~e~~~~ye~l~  245 (399)
                      ..+         |+|++|+..|+++++++|++ .++..+..+....        +++.++...|++.-
T Consensus       181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al  248 (474)
T 4abn_A          181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE  248 (474)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence            999         99999999999999999997 5566666666555        66666665555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.38  E-value=1.6e-11  Score=116.59  Aligned_cols=102  Identities=25%  Similarity=0.321  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .++.+...|..++..|+|++|+..|.+++..+| +..+|.++|.+|+.+++|++|+..|+++++++|++..+|+.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            356889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCC---cH
Q 044737          196 AMLGHWEEAVHDLHVASKIDF---DE  218 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp---~~  218 (399)
                      ..+|++++|+..|+++++++|   ++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~  107 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEE  107 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccCh
Confidence            999999999999999999999   66

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.38  E-value=4.4e-12  Score=102.63  Aligned_cols=83  Identities=16%  Similarity=0.141  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          136 EAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       136 ~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                      .|+..|.+++.++| +..+|+++|.+|+.+++|++|+..|++++.++|+++.+|+.+|.+|..+|++++|+..|++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            58999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcH
Q 044737          215 DFDE  218 (399)
Q Consensus       215 dp~~  218 (399)
                      +|..
T Consensus        83 ~~~~   86 (115)
T 2kat_A           83 AQSR   86 (115)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9865

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.38  E-value=1.3e-12  Score=111.76  Aligned_cols=110  Identities=9%  Similarity=-0.010  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          137 AIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       137 Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      +-..|.+++.++| +..+++++|.+++..|+|.+|+..|++++.++|+++.+|+.+|.+|..+|+|++|+..|++++.++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3456889999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          216 FDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       216 p~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      |++ .....+..+...+++..++...|++...
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            998 5667778888888888888877766544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.38  E-value=1.2e-12  Score=139.22  Aligned_cols=125  Identities=11%  Similarity=-0.013  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+..+|..++..|+|++|+..|+++++++| ++.+|+++|.+|+.+|+|++|+.+|++||+++|+++.+|+++|.+|.
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            35678889999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      .+|+|++ +.+|++|++++|++ .++..+..+...+++..++...|++
T Consensus       513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~  559 (681)
T 2pzi_A          513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE  559 (681)
T ss_dssp             HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999 99999999999988 5566777777777777777666654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.38  E-value=2.6e-11  Score=107.55  Aligned_cols=130  Identities=17%  Similarity=0.094  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..+...|..++..|++++|+..|.+++.++| +..+|..+|.+|..++++++|+..+.+++.++|++..+|+.+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   85 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            4567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCHHHHHHHHHHHHh--hCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          195 HAML-GHWEEAVHDLHVASK--IDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       195 ~~~l-g~~eeA~~~l~~Al~--ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      +..+ |++++|+..|+++++  .+|.+ .+...+..+....++..+....++...
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  140 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL  140 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999 999999999999999  66665 445556666666666666666655443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=2.5e-12  Score=130.91  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISE---------GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM--------KKPNAAIRDATAALEI  180 (399)
Q Consensus       119 ~~~k~~g~~~~~~---------g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l--------~~~~~Ai~d~~~Al~l  180 (399)
                      ..+...|..++..         |+|++|+..|.+|+.++| +..+|+++|.+|..+        ++|++|+..|++|+++
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            5677889999999         999999999999999999 999999999999999        9999999999999999


Q ss_pred             CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHH
Q 044737          181 NP---DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKY  241 (399)
Q Consensus       181 ~p---~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~y  241 (399)
                      +|   +++.+|+++|.+|..+|+|++|+..|+++++++|++ .++..+..+...++++.+....|
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99   999999999999999999999999999999999998 44566666666666655555444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.38  E-value=9.7e-12  Score=128.70  Aligned_cols=129  Identities=15%  Similarity=0.010  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+...|..++..|+|++|+..|+++++++| +..+|.++|.+|..+|++++|+..|+++++++|+++.+|+++|.+|
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  101 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL  101 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            356789999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHH---HhHHHHHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNA---LRIEEHRRKYDRLR  245 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~---~k~~e~~~~ye~l~  245 (399)
                      ..+|++++|+..|+++++++|++ .+...+..+....   ++..++...|++.-
T Consensus       102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A          102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99999999999999999999987 4555666666666   66666666665543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.37  E-value=6.5e-12  Score=121.27  Aligned_cols=99  Identities=19%  Similarity=0.266  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..
T Consensus       214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  293 (365)
T 4eqf_A          214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN  293 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            3456667777777777777777777777777 777777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHhhCCc
Q 044737          198 LGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~  217 (399)
                      +|++++|+..|+++++++|+
T Consensus       294 ~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          294 LGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HTCCHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHhCcc
Confidence            77777777777777777665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.37  E-value=3.8e-12  Score=107.37  Aligned_cols=108  Identities=12%  Similarity=0.046  Sum_probs=95.4

Q ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          139 ELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       139 ~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      ..|.+++.++| +...++++|.+++..|+|.+|+..|++++.++|+++.+|+.+|.+|..+|+|++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788899999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          218 E-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       218 ~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      + .....+..+...+++..+....|++...
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8 5566777888888888888877766554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=3.3e-11  Score=108.57  Aligned_cols=126  Identities=17%  Similarity=0.122  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|++++|+..|.+++.++| +..++.++|.+|..++++++|+..++++++++|++..+|+.+|.++.
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  136 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV  136 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46778889999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      .+|++++|+..|+++++++|++ .+...+..+....++..+....++.
T Consensus       137 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (243)
T 2q7f_A          137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA  184 (243)
T ss_dssp             HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999876 4444555555555555554444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=2.2e-11  Score=109.76  Aligned_cols=127  Identities=16%  Similarity=0.142  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|++++|+..|.+++.++| +..++.++|.+|+.++++++|+..++++++++|+++.+|+.+|.++.
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  170 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA  170 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45677899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      .+|++++|+..|+++++++|++ .+...+..+....++..++...|++.
T Consensus       171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999987 44555555555555555555544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=6.1e-11  Score=107.95  Aligned_cols=127  Identities=14%  Similarity=0.134  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE--INPDSAKGYKTRGMA  194 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~--l~p~~~~a~~~~g~a  194 (399)
                      +..+...|..++..|++++|+..|.+++.++| +..+|.++|.+|..++++++|+..+++++.  .+|.++.+|+.+|.+
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV  150 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence            45677888899999999999999999999999 889999999999999999999999999998  888888999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      +..+|++++|+..|+++++++|.+ .+...+..+....++..++...++..
T Consensus       151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999886 44556666666666666666665554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.35  E-value=3.8e-11  Score=109.16  Aligned_cols=102  Identities=16%  Similarity=0.109  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK---GYKT  190 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~---a~~~  190 (399)
                      +..+..+|..++..|+|++|+..|++++..+| +   ..+++++|.+|+++++|++|+..|+++++++|++..   +|++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            45788999999999999999999999999998 4   579999999999999999999999999999999864   8999


Q ss_pred             HHHHHHh------------------cCCHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAM------------------LGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~------------------lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.++..                  +|++++|+..|+++++.+|++.
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            9999886                  5799999999999999999973

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.35  E-value=1e-11  Score=119.35  Aligned_cols=101  Identities=18%  Similarity=0.233  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|.
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45667788888888889899888888888888 88888888888888888888888888888888888888888888888


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+|++++|+..|+++++++|++
T Consensus       297 ~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          297 NLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC
Confidence            8889999988888888888765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.35  E-value=8.4e-12  Score=120.50  Aligned_cols=101  Identities=20%  Similarity=0.219  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+...|..++..|+|++|+..|++++.++| +..+|.++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            3578899999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|++++|+..|+++++++|++.
T Consensus       146 ~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHH
T ss_pred             cccHHHHHHHHHHHHHhCccch
Confidence            9999999999999999999863

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.34  E-value=3.8e-11  Score=118.71  Aligned_cols=111  Identities=23%  Similarity=0.286  Sum_probs=102.1

Q ss_pred             ccCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 044737          109 EVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG  187 (399)
Q Consensus       109 ~~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a  187 (399)
                      ++.......+..+...|..++..|+|++|+..|++++.++| +..+|.++|.+|+.++++++|+..|+++++++|+++.+
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            34445556788999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |+.+|.+|..+|++++|+..|+++++++|++.
T Consensus        97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999874

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.34  E-value=2.7e-11  Score=110.38  Aligned_cols=129  Identities=19%  Similarity=0.153  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+...|..++..|+|++|+..|.+++.++| +..+|..+|.+|..++++++|+..+.++++++|++..+|+.+|.+|
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            478899999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHh--hCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASK--IDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~--ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      ..+|++++|+..|++++.  .+|.+ .+...+..+....++..+....+++..
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL  168 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999  77876 445556666656666666666655543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.34  E-value=3e-12  Score=111.31  Aligned_cols=120  Identities=12%  Similarity=0.114  Sum_probs=103.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhcCCH--H
Q 044737          127 EAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA-HAMLGHW--E  202 (399)
Q Consensus       127 ~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a-~~~lg~~--e  202 (399)
                      .++..++|++|+..|.+++..+| +..+|..+|.+|+..++|..|+..|.++++++|+++.+|+.+|.+ +...+++  +
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            35677899999999999999999 999999999999999999999999999999999999999999999 8899999  9


Q ss_pred             HHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          203 EAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       203 eA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +|+..|+++++++|++ .+...+..+....++..++...|++.-.
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            9999999999999997 5566777777777777777777766544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.34  E-value=1.6e-11  Score=119.69  Aligned_cols=126  Identities=22%  Similarity=0.115  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|.+.|++++|+..|.++++++|++..++..+|.++.
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  146 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45678888888888888888888888888888 88888888888888888888888888888888888888888888888


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      .+|++++|+..|+++++++|++ ..+..+..+....+++.+....|++
T Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  194 (388)
T 1w3b_A          147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8888888888888888888876 3444555555444555554444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.33  E-value=7.9e-12  Score=109.19  Aligned_cols=121  Identities=15%  Similarity=0.095  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDAT-----------------------  175 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~-----------------------  175 (399)
                      .+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|+.+|++++|+..++                       
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence            456677788888888888888888888888 88888888888888888777665444                       


Q ss_pred             -----------HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH---HHHHHHHHHhHHHHhHHHHHHH
Q 044737          176 -----------AALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE---EIAAVLKKVEPNALRIEEHRRK  240 (399)
Q Consensus       176 -----------~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~---~~~~~lk~v~~~~~k~~e~~~~  240 (399)
                                 ++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+.   .++..+..+...+++..+....
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence                       4455567777777777777777777777777777777777653   2344444444444443333333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.4e-11  Score=123.41  Aligned_cols=105  Identities=27%  Similarity=0.329  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ..+.+..++.+|+.+++.|+|++|+..|++++.++|+..+|.++|.||+++|+|++|+.+|+++++++|+++.+|+.+|.
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            35678999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +|..+|++++|+..|+++++++|.+
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999999854

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.32  E-value=6.8e-11  Score=112.15  Aligned_cols=110  Identities=24%  Similarity=0.326  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA----IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a----~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ......|..++..|+|++|+..|.+++.++| +.    .+|.++|.+|.+++++++|+..|+++++++|+++.+|+.+|.
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  314 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE  314 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3455679999999999999999999999999 65    457789999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHHh
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKVE  228 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~  228 (399)
                      ++..+|++++|+..|+++++++|++. +...+..+.
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            99999999999999999999999974 344444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.32  E-value=3.7e-11  Score=117.06  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      .+...|..+...|++++|+..|.+++.++| +..+|.++|.+|...+++.+|+..|+++++++|+++.+|+.+|.++...
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  216 (388)
T 1w3b_A          137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA  216 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            344445555555555555555555555555 5555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhhCCcH
Q 044737          199 GHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~  218 (399)
                      +++++|+..|++++.++|++
T Consensus       217 ~~~~~A~~~~~~al~~~p~~  236 (388)
T 1w3b_A          217 RIFDRAVAAYLRALSLSPNH  236 (388)
T ss_dssp             TCTTHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHHHHHHhhCcCC
Confidence            55555555555555555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.32  E-value=6.8e-11  Score=104.82  Aligned_cols=126  Identities=15%  Similarity=0.065  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM-KKPNAAIRDATAALE--INPDSAKGYKTRGM  193 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l-~~~~~Ai~d~~~Al~--l~p~~~~a~~~~g~  193 (399)
                      +..+...|..++..|++++|+..|.+++.++| +..++.++|.+|..+ +++++|+..++++++  .+|.+..+|+.+|.
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  121 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI  121 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence            34678899999999999999999999999999 999999999999999 999999999999999  67777899999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      ++..+|++++|+..|+++++++|++ .....+..+....++..+....++.
T Consensus       122 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A          122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999987 4455555555555555555544443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.32  E-value=3e-11  Score=114.56  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHH---------------------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDAT---------------------  175 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~---------------------  175 (399)
                      ...+...|..++..|++++|+..|.+++.++| +..+++++|.+|+.+|++++|+..++                     
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence            45678999999999999999999999999999 99999999999999999998765544                     


Q ss_pred             -------------HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH---HHHHHHHHHhHHHHh
Q 044737          176 -------------AALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE---EIAAVLKKVEPNALR  233 (399)
Q Consensus       176 -------------~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~---~~~~~lk~v~~~~~k  233 (399)
                                   +++.++|+++.+++.+|.+|...|++++|+..|+++++++|++   .+...+..+...+++
T Consensus       197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence                         4566677788888888888888888888888888888888765   233344444444333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.32  E-value=6.5e-12  Score=133.65  Aligned_cols=109  Identities=13%  Similarity=-0.038  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+..+|..++..|+|++|+..|++||+++| +..+|+++|.+|.++|+|++ +.+|++||+++|+++.+|+++|.+|.
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            45677999999999999999999999999999 99999999999999999999 99999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE-IAAVLKKV  227 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v  227 (399)
                      .+|++++|+.+|++|++++|++. ++..+..+
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            99999999999999999999984 34344444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=1e-11  Score=114.24  Aligned_cols=121  Identities=16%  Similarity=0.101  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----AKGYKTRGMA  194 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----~~a~~~~g~a  194 (399)
                      .+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|+.+++|++|+..|++++. .|.+    ..+|+.+|.+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence            345556666666666666666666666666 555666666666666666666666666665 2222    3345666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKY  241 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~y  241 (399)
                      +..+|++++|+..|+++++++|++ .++..+..+....+++.++...|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  131 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM  131 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            666666666666666666666655 33444444444444444444433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.29  E-value=6.1e-11  Score=111.32  Aligned_cols=100  Identities=17%  Similarity=0.197  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|++++|+..|.+++.++| +..+|.++|.+|..++++++|+..++++++++|++..+|+.+|.++.
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34567788999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCc
Q 044737          197 MLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .+|++++|+..|+++++++|+
T Consensus       252 ~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          252 NMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTT
T ss_pred             HhccHHHHHHHHHHHHHhCCc
Confidence            999999999999999999988

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.29  E-value=6.1e-11  Score=95.74  Aligned_cols=99  Identities=28%  Similarity=0.325  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+...|..++..+++++|+..|.+++.++| +..++.++|.+|...+++++|+..+.+++.++|.+..+|+.+|.++..
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            4567789999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCc
Q 044737          198 LGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~  217 (399)
                      +|++++|+..|++++.++|+
T Consensus       116 ~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          116 QGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT
T ss_pred             HccHHHHHHHHHHHHccCCC
Confidence            99999999999999999886

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.29  E-value=4.1e-11  Score=108.95  Aligned_cols=102  Identities=16%  Similarity=0.080  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHH------------------cCCHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA---IMYATRASVYIK------------------MKKPNAAIRDAT  175 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a---~~~~nra~a~~~------------------l~~~~~Ai~d~~  175 (399)
                      ...+...|..+++.|+|++|+..|+++|+++| +.   .+++++|.+|..                  ++++++|+..|+
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  120 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS  120 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence            35788899999999999999999999999999 53   488999999987                  578999999999


Q ss_pred             HHHHhCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          176 AALEINPDSAKGY-----------------KTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       176 ~Al~l~p~~~~a~-----------------~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ++|+.+|++..++                 +.+|.+|...|+|++|+..|+++++..|++.
T Consensus       121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence            9999999997654                 6789999999999999999999999999874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.29  E-value=2.8e-11  Score=111.33  Aligned_cols=115  Identities=12%  Similarity=0.009  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..+++|++|+..++++++++|+++.+|+.+|...+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            45688999999999999999999999999999 99999999999999999999999999999999999999999994444


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNAL  232 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~  232 (399)
                      ..+++++|+..|+++++++|++ .....+..+...+.
T Consensus       154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  190 (272)
T 3u4t_A          154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD  190 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence            5569999999999999999997 33444444444333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.28  E-value=6.1e-11  Score=113.82  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+..+|..++..|+|++|+..|.+++.++| +..+|.++|.+|..++++++|+..|.++++++|+++.+|+.+|.+|..
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  144 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN  144 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|++++|+..|+++++++|++.
T Consensus       145 ~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          145 ESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTG
T ss_pred             cCCHHHHHHHHHHHHHhCcCcH
Confidence            9999999999999999999863

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.28  E-value=7.4e-11  Score=110.89  Aligned_cols=122  Identities=11%  Similarity=-0.014  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEG-KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       119 ~~~k~~g~~~~~~g-~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ..+...|..++..| ++++|+..|.+++.++| +..+|.++|.+|..++++++|+..+.++++++|++..+++.+|.++.
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  170 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG  170 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            34566666777777 67777777777777777 66667777777777777777777777777777777677777777777


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRK  240 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~  240 (399)
                      .+|++++|+..|+++++++|++ .+...+..+....++..+....
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  215 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW  215 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence            7777777777777777777665 3333444444434443333333

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.27  E-value=2.8e-13  Score=101.77  Aligned_cols=52  Identities=23%  Similarity=0.467  Sum_probs=49.8

Q ss_pred             chhccCCCHHHHhhcCCHHHHHHHHHHhhChHHHHH-hhcCCcHHHHHHHHHH
Q 044737          342 DFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQ-HQANPKVAPIIAKMMA  393 (399)
Q Consensus       342 ~~~~~~~dpe~~~~~~dp~~~~~~~~~~~np~~~~~-~~~~p~~~~~~~~l~~  393 (399)
                      .+.++.+||+++++|+||+|+++|++|++||+++++ |++||+|+++|++||+
T Consensus        15 ~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g   67 (71)
T 2llv_A           15 LIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMG   67 (71)
T ss_dssp             CHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHc
Confidence            458899999999999999999999999999999999 9999999999999975

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=1.1e-10  Score=95.49  Aligned_cols=97  Identities=20%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHh
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVE  228 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~  228 (399)
                      .+..|.++|.++++.++|.+|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++ ..+..+..+.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999998 5566777777


Q ss_pred             HHHHhHHHHHHHHHHHHH
Q 044737          229 PNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       229 ~~~~k~~e~~~~ye~l~~  246 (399)
                      ..+++..++...|++...
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            777777777776665544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.27  E-value=8.3e-11  Score=110.58  Aligned_cols=128  Identities=16%  Similarity=0.010  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+...|..++..|+|++|+..|.+++.++| +...+.++|.+|..++++++|+..++++++++|+++.+|+.+|.++..
T Consensus       126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            4577888888999999999999999999998 888888899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhC---------CcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKID---------FDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ld---------p~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +|++++|+..|++++++.         |.. .+...+..+....++..++...|++...
T Consensus       206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  264 (330)
T 3hym_B          206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV  264 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999999998875         332 4556666666666777777766665544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.26  E-value=4e-11  Score=99.68  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+.++.++|.+|++.|+|++|+..|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            467889999999999999999999999999999999999999999999999999999999999999875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.25  E-value=3.1e-11  Score=122.03  Aligned_cols=106  Identities=27%  Similarity=0.413  Sum_probs=95.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       112 ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      ++....+..+..+|+.+++.|+|++|+..|++++.++| ++.+|.++|.||+++|+|++|+..|+++++++|+++.+|+.
T Consensus        19 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   98 (537)
T 3fp2_A           19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR   98 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence            34456789999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          191 RGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       191 ~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +|.++..+|++++|+..|+ ++.++|+.
T Consensus        99 la~~~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A           99 RASANESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence            9999999999999999995 88888875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.25  E-value=6.6e-11  Score=112.14  Aligned_cols=103  Identities=17%  Similarity=0.021  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC---
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------AIMYATRASVYIKM-KKPNAAIRDATAALEINPDS---  184 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------a~~~~nra~a~~~l-~~~~~Ai~d~~~Al~l~p~~---  184 (399)
                      ..+..+.+.|..+...|+|++|+.+|.+||.+.+ .      +.+|.++|.+|... +++++|+..|++||++.|..   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            3467888999999999999999999999999876 2      67889999999995 99999999999999998754   


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          185 ---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       185 ---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                         ..+|.++|.+|..+|+|++|+..|++++++.|++
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence               5678899999999999999999999999998875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.24  E-value=1.7e-10  Score=109.84  Aligned_cols=128  Identities=16%  Similarity=0.040  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASV--YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a--~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ...+...|..+.+.|++++|+..|.+++.++| ........+.+  +...+++++|+..|+++++.+|+++.+|+.+|.+
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~  209 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC  209 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34677778888888888888888888888888 64333322222  2233778888888888888888888888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHH-HHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEE-HRRKYDRLR  245 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e-~~~~ye~l~  245 (399)
                      +..+|+|++|+..|+++++++|++ .+...+..+....++..+ ...+++++.
T Consensus       210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888888888888888888887 444455555444555433 234444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=1.3e-10  Score=106.43  Aligned_cols=127  Identities=24%  Similarity=0.192  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-----  180 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-----  180 (399)
                      ...+..+...|..++..|+|++|+..|.+++.+        +| ...+|.++|.+|..++++++|+..|.+++.+     
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            345778899999999999999999999999988        35 8899999999999999999999999999998     


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCcH-HHHHHHHHHhHHHHhHHHHHHHH
Q 044737          181 ---NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI--------DFDE-EIAAVLKKVEPNALRIEEHRRKY  241 (399)
Q Consensus       181 ---~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l--------dp~~-~~~~~lk~v~~~~~k~~e~~~~y  241 (399)
                         +|....+|+.+|.+|..+|++++|+..|++++++        +|.. .+...+..+....++..++...+
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence               5777899999999999999999999999999998        5544 33444555555555544444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.23  E-value=6e-11  Score=102.07  Aligned_cols=97  Identities=19%  Similarity=0.153  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHh
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVE  228 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~  228 (399)
                      .+..|+++|.+|+..++|.+|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++ .++..+..+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999999999999999999999998 5677788888


Q ss_pred             HHHHhHHHHHHHHHHHHH
Q 044737          229 PNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       229 ~~~~k~~e~~~~ye~l~~  246 (399)
                      ..++++.++...|++.-.
T Consensus        90 ~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHH
Confidence            888888888877776554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.23  E-value=1.8e-10  Score=88.05  Aligned_cols=83  Identities=28%  Similarity=0.336  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+...|..++..++|++|+..|.+++.++| +..+|.++|.+|..++++++|+..++++++++|+++.++..+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            456788889999999999999999999999999 8999999999999999999999999999999999999999999888


Q ss_pred             HhcC
Q 044737          196 AMLG  199 (399)
Q Consensus       196 ~~lg  199 (399)
                      ..+|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            7654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.22  E-value=8.5e-11  Score=102.27  Aligned_cols=96  Identities=18%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPD-------SAK-----GYKTRGMAHAMLGHWEEAVHDLHVASKI----  214 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~-------~~~-----a~~~~g~a~~~lg~~eeA~~~l~~Al~l----  214 (399)
                      +..+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|.+|+++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567889999999999999999999999999999       555     9999999999999999999999999999    


Q ss_pred             ---CCcH-HHH----HHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          215 ---DFDE-EIA----AVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       215 ---dp~~-~~~----~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                         +|++ ..+    ..+..+...+++..++...|++.-+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence               9998 456    6677778888888888888877665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.22  E-value=1.7e-10  Score=108.24  Aligned_cols=100  Identities=12%  Similarity=0.035  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+..+|..++..|+|++|+..|.+++..+| +..+|..+|.+|..++++++|+..++++++++|++..+|+.+|.++..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcH
Q 044737          198 LGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +|++++|+..|+++++++|.+
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~  122 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQY  122 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTT
T ss_pred             cCCHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999986

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.22  E-value=1.9e-11  Score=95.81  Aligned_cols=89  Identities=18%  Similarity=0.224  Sum_probs=79.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIMLNP-SAI-MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~-~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      ..+|..++..|+|++|+..|.+++.++| +.. +|.++|.+|+.+++|++|+..|+++++++|++..+|++        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            5688999999999999999999999999 988 99999999999999999999999999999999988855        5


Q ss_pred             CHHHHHHHHHHHHhhCCcH
Q 044737          200 HWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       200 ~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+.+|+..|++++.++|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            6778888888888887765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.22  E-value=3.9e-10  Score=113.86  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..+++|++|+..|+++++++|+++.+|+.+|.++..
T Consensus       277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  356 (537)
T 3fp2_A          277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK  356 (537)
T ss_dssp             HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4566778888888888888888888888888 888999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +|++++|+..|+++++++|++ .+...+..+....++..++...|++.-.
T Consensus       357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999999999999999887 5566777777777777777776665443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.21  E-value=3.1e-10  Score=104.06  Aligned_cols=117  Identities=13%  Similarity=0.067  Sum_probs=104.1

Q ss_pred             HcCCHHHHHHHHHHHHHhC----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 044737          130 SEGKLDEAIELSTEAIMLN----P-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEA  204 (399)
Q Consensus       130 ~~g~~~~Ai~~y~~Ai~l~----P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA  204 (399)
                      ..++|++|+..|.+++...    | ++.+|.++|.+|+.+++|.+|+..|+++++++|+++.+|+.+|.++..+|+|++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            3478999999999999983    4 7899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          205 VHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       205 ~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +..|+++++++|++ .+...+..+....++..+....|++...
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  139 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ  139 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999999999987 5666777777777777777777766544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.21  E-value=2e-10  Score=118.79  Aligned_cols=116  Identities=17%  Similarity=0.129  Sum_probs=87.9

Q ss_pred             cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737          131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH  209 (399)
Q Consensus       131 ~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~  209 (399)
                      .|++++|+..|.++++++| +..+|.++|.+|..+++|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4789999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          210 VASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       210 ~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ++++++|++ .....+..+....++..++...|++.-.
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  119 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ  119 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999998 5566777777777777777777766544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.21  E-value=4.8e-10  Score=92.37  Aligned_cols=101  Identities=18%  Similarity=0.101  Sum_probs=88.5

Q ss_pred             HhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHH
Q 044737          146 MLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAV  223 (399)
Q Consensus       146 ~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~  223 (399)
                      ..+| ++..|.++|.+++..++|..|+..|.+++.++|+++.+|+.+|.++..+++|++|+..|+++++++|++ ..+..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            4567 899999999999999999999999999999999999999999999999999999999999999999997 55667


Q ss_pred             HHHHhHHHHhHHHHHHHHHHHHH
Q 044737          224 LKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       224 lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +..+....+++.+....|++...
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            77777777777777777766544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.21  E-value=5.8e-11  Score=94.33  Aligned_cols=72  Identities=17%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          147 LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       147 l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+| ++.+|+++|.+|+.+|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            468 899999999999999999999999999999999999999999999999999999999999999998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.19  E-value=1.6e-10  Score=109.42  Aligned_cols=129  Identities=13%  Similarity=0.001  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-----  184 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-----  184 (399)
                      .+..+...|+.+...|+|++|+.+|.+|+.+.+       .+.+|.++|.+|..+|+|++|+..|++||.+.+..     
T Consensus        36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  115 (292)
T 1qqe_A           36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            345566678888899999999999999999853       37899999999999999999999999999998754     


Q ss_pred             -HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCcH-------HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          185 -AKGYKTRGMAHAML-GHWEEAVHDLHVASKIDFDE-------EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       185 -~~a~~~~g~a~~~l-g~~eeA~~~l~~Al~ldp~~-------~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                       +.+|.++|.+|... |++++|+..|++|+++.|.+       .+...+..+...++++.++...|++..
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  185 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             57899999999995 99999999999999998754       123344445555555566655555443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.18  E-value=2.1e-10  Score=111.37  Aligned_cols=97  Identities=13%  Similarity=0.065  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      ..+..+.+.|..+++.|+|++|+.+|++||.++| +..+|+++|.+|+.+++|++|+.+|++|++++|++..+|+.++.+
T Consensus       194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3468899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHH-HHHHHHH
Q 044737          195 HAMLGHWEEAV-HDLHVAS  212 (399)
Q Consensus       195 ~~~lg~~eeA~-~~l~~Al  212 (399)
                      +..++++++|. ..|++.+
T Consensus       274 ~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            99999999984 4555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.17  E-value=6.1e-10  Score=105.90  Aligned_cols=90  Identities=14%  Similarity=0.049  Sum_probs=83.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH-HHHH
Q 044737          130 SEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE-AVHD  207 (399)
Q Consensus       130 ~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee-A~~~  207 (399)
                      ..|+|++|+..|++++..+| ++.+|.++|.+|.++|+|++|+..++++|+++|+++.+|+++|.++..+|++.+ +...
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            34899999999999999999 999999999999999999999999999999999999999999999999999976 4678


Q ss_pred             HHHHHhhCCcHH
Q 044737          208 LHVASKIDFDEE  219 (399)
Q Consensus       208 l~~Al~ldp~~~  219 (399)
                      ++++++++|++.
T Consensus       258 ~~~~~~~~P~~~  269 (291)
T 3mkr_A          258 LSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCh
Confidence            899999999986

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.16  E-value=1.7e-09  Score=110.99  Aligned_cols=129  Identities=17%  Similarity=0.099  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..+++.|++++|+..|.+++.++| +..+|..++.+|.+.|++++|+..|+++++++|++..+|+.++.+|.
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            45677889999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..|++++|+..|+++++++|++ .++..+..+....+++.++...|+....
T Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  503 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL  503 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999999999987 4556666666666777777766665433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.16  E-value=5.6e-10  Score=91.89  Aligned_cols=90  Identities=14%  Similarity=0.113  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHH
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPN  230 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~  230 (399)
                      ..++.+|.++++.|++.+|+..|+++|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++ .++..+..+...
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999998 445556665555


Q ss_pred             HHhHHHHHHHH
Q 044737          231 ALRIEEHRRKY  241 (399)
Q Consensus       231 ~~k~~e~~~~y  241 (399)
                      .++..++...|
T Consensus        98 ~g~~~~A~~~~  108 (121)
T 1hxi_A           98 EHNANAALASL  108 (121)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            55554444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.15  E-value=5.5e-10  Score=94.53  Aligned_cols=97  Identities=18%  Similarity=0.149  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA--  194 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a--  194 (399)
                      +..+...|..++..|+|++|+..|.+++.++| +..+|.++|.+|..++++++|+..+.++++++|.+..++..++.+  
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  126 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  126 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45788899999999999999999999999999 999999999999999999999999999999999999988555555  


Q ss_pred             HHhcCCHHHHHHHHHHHHhh
Q 044737          195 HAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~l  214 (399)
                      +..++++++|+..+.++..+
T Consensus       127 ~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          127 IVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccchHHH
Confidence            88889999999988876554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.14  E-value=4.5e-10  Score=102.71  Aligned_cols=102  Identities=22%  Similarity=0.140  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-----  180 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-----  180 (399)
                      ...+..+...|..++..|+|++|+..|.+++.+        +| ...+|.++|.+|..++++++|+..+++++.+     
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  161 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL  161 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            345678899999999999999999999999998        57 8999999999999999999999999999999     


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          181 ---NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       181 ---~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                         +|....+|+.+|.+|..+|++++|+..|++++++.+
T Consensus       162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence               777889999999999999999999999999998843

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.14  E-value=3e-11  Score=122.46  Aligned_cols=116  Identities=13%  Similarity=0.043  Sum_probs=102.5

Q ss_pred             cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 044737          131 EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---------------AKGYKTRGMA  194 (399)
Q Consensus       131 ~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---------------~~a~~~~g~a  194 (399)
                      .++|++|+..|..++..+| .+.+|.++|.+|+++++|..|+..|++||+++|++               ..+|+++|.|
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            3467789999999999999 99999999999999999999999999999999998               7999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      |..+++|++|+.+|++|++++|++ .+...+..+...+.++.++...|++...
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~  379 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  379 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            999999999999999999999998 4566677777777777777777766543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.13  E-value=3.2e-09  Score=108.87  Aligned_cols=129  Identities=12%  Similarity=-0.019  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ...+...+..+.+.|++++|+..|.+++.+.| +..+|.+++.+|.+.|++++|+..++++++++|+++.+|..++.+|.
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            45677889999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhh------CCcH--HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKI------DFDE--EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~l------dp~~--~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..|++++|+..|++++++      +|++  .++..+..+....+++.++...|++.-.
T Consensus       487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL  544 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999998      6763  5566777777777777777777766543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.10  E-value=1.5e-09  Score=106.07  Aligned_cols=119  Identities=15%  Similarity=0.160  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA----IMYATRASVYIKMKKPNAAIRDATAALEI------NPD  183 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a----~~~~nra~a~~~l~~~~~Ai~d~~~Al~l------~p~  183 (399)
                      ...+..+...|..++..|+|++|+..|.+++.++| +.    .+|.++|.+|+.+|+|++|+..|++++.+      ++.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            56678889999999999999999999999999999 64    68999999999999999999999999998      677


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CcH-HHHHHHHHHhHHHHh
Q 044737          184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKID------FDE-EIAAVLKKVEPNALR  233 (399)
Q Consensus       184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld------p~~-~~~~~lk~v~~~~~k  233 (399)
                      .+.+|+.+|.+|..+|++++|+..|++++++.      +.. .+...+..+....++
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            88999999999999999999999999999984      322 234455555555555

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=6.8e-10  Score=110.68  Aligned_cols=102  Identities=18%  Similarity=0.070  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIML---------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN------  181 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l---------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~------  181 (399)
                      +..+...|.+++..|+|++|+..|.+|+++         +| .+..|.|+|.+|..+|+|++|+.++++++++.      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            446778999999999999999999999987         56 78999999999999999999999999999873      


Q ss_pred             --CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCcHH
Q 044737          182 --PDSAKGYKTRGMAHAMLG--HWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       182 --p~~~~a~~~~g~a~~~lg--~~eeA~~~l~~Al~ldp~~~  219 (399)
                        +..+.+|..+|.++..++  +|++|+.+|++|++++|++.
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~  172 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP  172 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence              456889999998887664  69999999999999999984

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=6.7e-10  Score=103.38  Aligned_cols=132  Identities=23%  Similarity=0.177  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI----  180 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l----  180 (399)
                      ....+..+...|..++..|+|++|+..|.+++.+        .| .+.++.++|.+|..++++++|+..+.+++.+    
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3466788999999999999999999999999996        45 8999999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          181 ----NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID--------FDE-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       181 ----~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld--------p~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                          +|....+|+.+|.+|..+|++++|+..|++++++.        |.. .+...+..+....+++.++...|++..
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                46668899999999999999999999999999884        332 234455555555555666655555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.09  E-value=3.4e-09  Score=100.84  Aligned_cols=128  Identities=12%  Similarity=-0.038  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAI-MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~-~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ..|...|..+...|++++|+..|+++|+++| +.. +|.+++.++.+++++++|+..|++|++++|.+..+|...+....
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  179 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4678889999999999999999999999999 776 89999999999999999999999999999999888876666544


Q ss_pred             -hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          197 -MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       197 -~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                       .+|++++|+..|+++++++|++ .++..+..+....++..+.+..|++.-.
T Consensus       180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence             3799999999999999999987 4555555666566677777777766544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.08  E-value=1.8e-09  Score=89.80  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---  184 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---  184 (399)
                      ...+..+...|..++..++|++|+..|.+++.+.+       .+.++.++|.+|..++++++|+..+.+++.+.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            35677899999999999999999999999999865       24689999999999999999999999999986543   


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          185 ---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       185 ---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                         ..+++++|.++..+|++++|+..|++++++..
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence               67899999999999999999999999998753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.08  E-value=5.1e-10  Score=95.95  Aligned_cols=97  Identities=16%  Similarity=0.087  Sum_probs=87.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEI------------------NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l------------------~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                      .+..+.++|.++++.++|..|+..|++||.+                  +|.++.+|+++|.+|..+|+|++|+.+|.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4678899999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          212 SKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       212 l~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ++++|++ .+...+..+...++++.++...|++.-.
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            9999998 5566778888888888888887776554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.06  E-value=1.8e-09  Score=100.37  Aligned_cols=130  Identities=22%  Similarity=0.215  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEIN----  181 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~----  181 (399)
                      ...+..+...|..++..|+|++|+..|.+++.+        .| ...+|.++|.+|..++++++|+..+.+++.+.    
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  145 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence            445677889999999999999999999999988        35 78999999999999999999999999999984    


Q ss_pred             ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          182 ----PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI--------DFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       182 ----p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l--------dp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                          |....+|+.+|.++..+|++++|+..|++++++        +|.. .+...+..+....++..++...+++.
T Consensus       146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                666789999999999999999999999999998        4444 33445555555555555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.6e-09  Score=85.58  Aligned_cols=68  Identities=15%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +..|.++|.+++..++|.+|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            56789999999999999999999999999999999999999999999999999999999999999987

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.06  E-value=2.6e-09  Score=111.34  Aligned_cols=117  Identities=10%  Similarity=0.031  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC
Q 044737          115 REAAAEAKAKAMEAISEGK----------LDEAIELSTEAIMLNP-SAIMYATRASVYIKMK--KPNAAIRDATAALEIN  181 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~----------~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~--~~~~Ai~d~~~Al~l~  181 (399)
                      .+....|..++..+...++          |++|+.+|.++|.++| +..+|+.|+.++.+++  +|++++..|+++|+++
T Consensus        60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d  139 (567)
T 1dce_A           60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD  139 (567)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc
Confidence            3446788899999998888          9999999999999999 9999999999999999  7799999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHH
Q 044737          182 PDSAKGYKTRGMAHAMLG-HWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNA  231 (399)
Q Consensus       182 p~~~~a~~~~g~a~~~lg-~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~  231 (399)
                      |.+..||..|+.++..++ .++++++++.++++++|.| .++.....+...+
T Consensus       140 ~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            999999999999999999 9999999999999999998 5566555554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=7.5e-09  Score=98.43  Aligned_cols=84  Identities=15%  Similarity=-0.019  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHH-hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          135 DEAIELSTEAIM-LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK-GYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       135 ~~Ai~~y~~Ai~-l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~-a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                      ++|+..|.+||. ++| +..+|.++|.++..++++++|+..|+++|+++|.++. +|..+|.++..+|++++|+..|++|
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            556666666665 455 5556666666666666666666666666666665554 5666666666666666666666666


Q ss_pred             HhhCCcH
Q 044737          212 SKIDFDE  218 (399)
Q Consensus       212 l~ldp~~  218 (399)
                      ++++|.+
T Consensus       161 ~~~~p~~  167 (308)
T 2ond_A          161 REDARTR  167 (308)
T ss_dssp             HTSTTCC
T ss_pred             HhcCCCC
Confidence            6655544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.05  E-value=9.5e-10  Score=110.03  Aligned_cols=129  Identities=10%  Similarity=0.020  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ...+...|..++..|++++|+..|.+++.++| +..++.++|.+|..++++++|+..++++++++|+++.+|+.+|.++.
T Consensus       304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  383 (514)
T 2gw1_A          304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT  383 (514)
T ss_dssp             THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            45788899999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH-------HHHHHHHHhHH---HHhHHHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE-------IAAVLKKVEPN---ALRIEEHRRKYDRLRR  246 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~-------~~~~lk~v~~~---~~k~~e~~~~ye~l~~  246 (399)
                      .+|++++|+..|+++++++|++.       +...+..+...   .++..++...|+....
T Consensus       384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            99999999999999999988763       55566666656   6666666666655443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.04  E-value=9.7e-09  Score=95.06  Aligned_cols=123  Identities=13%  Similarity=0.049  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIK----MKKPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      .+..+...|..++..+++++|+.+|.+++.  | +..++.++|.+|..    .+++++|+..|+++++++  ++.+++.+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l   80 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   80 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence            356778889999999999999999999888  6 77888889999998    999999999999998885  78899999


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHH----HHhHHHHHHHHHHH
Q 044737          192 GMAHAM----LGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPN----ALRIEEHRRKYDRL  244 (399)
Q Consensus       192 g~a~~~----lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~----~~k~~e~~~~ye~l  244 (399)
                      |.+|..    .+++++|+..|+++++++ +..+...+..+...    ..+..+...+|++.
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a  140 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA  140 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            999998    999999999999998885 22344455555444    44555555555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.03  E-value=2.5e-09  Score=81.47  Aligned_cols=70  Identities=26%  Similarity=0.334  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ++.+|+++|.+|+..++|++|+..|.+++.++|+++.+|+.+|.++..++++++|+..|+++++++|++.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~   77 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence            6788999999999999999999999999999999999999999999999999999999999999999873

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.03  E-value=8e-10  Score=105.39  Aligned_cols=100  Identities=13%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-----  184 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-----  184 (399)
                      .+..+.+.|..+...|+|++|+.+|.+|+.+.+       .+.+|.++|.+|.. ++|++|+..|++|+.+.+..     
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~  153 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ  153 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence            455666667777777777777777777776632       24566677777766 77777777777777665533     


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          185 -AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       185 -~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                       ..+|.++|.+|..+|+|++|+..|++++++.++
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             456667777777777777777777777766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.03  E-value=5.5e-10  Score=87.70  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=78.4

Q ss_pred             hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc--H-HHHH
Q 044737          147 LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD--E-EIAA  222 (399)
Q Consensus       147 l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~--~-~~~~  222 (399)
                      ++| ++.+|.++|.+++..++|++|+..++++++++|.+..+|+.+|.++..+++|++|+..|+++++++|+  + .++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            357 78889999999999999999999999999999999999999999999999999999999999999998  6 4444


Q ss_pred             HHHHHhHHH-HhHHHHHH
Q 044737          223 VLKKVEPNA-LRIEEHRR  239 (399)
Q Consensus       223 ~lk~v~~~~-~k~~e~~~  239 (399)
                      .+..+...+ ++..+...
T Consensus        81 ~l~~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEI   98 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHH
Confidence            555554444 44443333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=5.6e-09  Score=108.83  Aligned_cols=121  Identities=18%  Similarity=0.237  Sum_probs=101.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHH
Q 044737          112 DEKREAAAEAKAKAMEAISEGKL-DEAIELSTEAIMLNP-SAIMYATRASVYIKMKK----------PNAAIRDATAALE  179 (399)
Q Consensus       112 ee~~~~a~~~k~~g~~~~~~g~~-~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~----------~~~Ai~d~~~Al~  179 (399)
                      .+.++....+........+.++| ++|+..|+++|.++| +..+|+.|+.++..+++          +++++..++++|+
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~  101 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR  101 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH
Confidence            33344444555555556667776 578999999999999 99999999999999998          9999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHH
Q 044737          180 INPDSAKGYKTRGMAHAMLG--HWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNAL  232 (399)
Q Consensus       180 l~p~~~~a~~~~g~a~~~lg--~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~  232 (399)
                      ++|++..+|+.|+.++..++  +|++|+..+.+++++||.| .+|.....+...+.
T Consensus       102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A          102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence            99999999999999999999  7799999999999999998 55655555554444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.03  E-value=4.1e-09  Score=98.27  Aligned_cols=101  Identities=15%  Similarity=0.218  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----AIMYATRASVYIKMKKPNAAIRDATAALEI------NPDSA  185 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l------~p~~~  185 (399)
                      .+..+...|..++..|+|++|+..|.+++.++| +    +.+|.++|.+|+.+++|..|+..+++++.+      .+..+
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            356788899999999999999999999999999 6    688999999999999999999999999988      55668


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .+|+.+|.+|..+|++++|+..|++++++.+.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.03  E-value=2.8e-09  Score=103.99  Aligned_cols=130  Identities=10%  Similarity=0.039  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP--------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--  184 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--  184 (399)
                      ...+..+...|..++..|+|++|+.+|.+|+.+.+        .+.++.++|.+|..+|+|++|+..+.+|+++.+..  
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            45678889999999999999999999999999843        46789999999999999999999999999885433  


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----C-CcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          185 ----AKGYKTRGMAHAMLGHWEEAVHDLHVASKI-----D-FDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       185 ----~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l-----d-p~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                          +.+|+++|.+|..+|++++|+..|++|+++     + |.. .+...+..+...+++..++..++++.
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                358999999999999999999999999994     4 444 33445556555556655555555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=9.4e-09  Score=96.92  Aligned_cols=122  Identities=12%  Similarity=-0.017  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------AIMYATRASVYIKMKKPNAAIRDATAAL---EINPDSA  185 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------a~~~~nra~a~~~l~~~~~Ai~d~~~Al---~l~p~~~  185 (399)
                      ..+..+...|..+...|+|++|+..|.+|+.+.+ .      +.+|.++|.+|..+++|+.|+..|++|+   +..+++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            3445566788899999999999999999998754 2      6799999999999999999999999999   5566643


Q ss_pred             ----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc-------HHHHHHHHHHhHHHHhHHHH
Q 044737          186 ----KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD-------EEIAAVLKKVEPNALRIEEH  237 (399)
Q Consensus       186 ----~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~-------~~~~~~lk~v~~~~~k~~e~  237 (399)
                          .+|+++|.+|..+|+|++|+..|++++++.++       ..+...+..+...+++..++
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence                69999999999999999999999999998754       12334455555555544444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.02  E-value=6.2e-10  Score=98.69  Aligned_cols=121  Identities=12%  Similarity=-0.024  Sum_probs=97.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHH
Q 044737          126 MEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA----------------KGY  188 (399)
Q Consensus       126 ~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~----------------~a~  188 (399)
                      ...-..++|++|.+.|.......+ .+..+.++|.+++..++|.+|+..|.+++.+.|.++                .+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            334456778888888877777767 788999999999999999999999999999999887                899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +++|.+|..+++|++|+.+|+++++++|++ .+...+..+...+++..++...|++...
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999987 5566777777777888777777766544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.02  E-value=4.4e-09  Score=107.70  Aligned_cols=102  Identities=20%  Similarity=0.144  Sum_probs=89.9

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI---  180 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l---  180 (399)
                      +....+....+.+..+..+|+|++|+..|.+++.+        +| .+..+.|+|.+|..+|+|++|+..|.++|.+   
T Consensus       304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~  383 (490)
T 3n71_A          304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK  383 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            33455667778888899999999999999999987        44 6899999999999999999999999999987   


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          181 -----NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       181 -----~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                           +|+-+..|.++|.+|..+|+|++|+..|++|+++
T Consensus       384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 3444678999999999999999999999999976

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.01  E-value=4.5e-09  Score=101.60  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----AIMYATRASVYIKMKKPNAAIRDATAALEI------NPDSAK  186 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l------~p~~~~  186 (399)
                      +..+...|..++..|+|++|+.+|++++.+.| +    +.+|.++|.+|+.+++|+.|+..+++++.+      .|..+.
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            55788999999999999999999999999999 6    578999999999999999999999999988      455678


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-------HHHHHHHHhHHHHh
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-------IAAVLKKVEPNALR  233 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-------~~~~lk~v~~~~~k  233 (399)
                      +|+.+|.+|..+|++++|+..|++++++.+...       +...+..+....++
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999876531       23344445455555

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.01  E-value=3.3e-09  Score=85.26  Aligned_cols=84  Identities=20%  Similarity=0.180  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..++|++|+..|.+++.++| +..+|.++|.+|..+++++.|+..+.++++++|++..+++.++.++.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            45678899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCH
Q 044737          197 MLGHW  201 (399)
Q Consensus       197 ~lg~~  201 (399)
                      .+|++
T Consensus       126 ~~~~~  130 (131)
T 2vyi_A          126 KLREA  130 (131)
T ss_dssp             HHTTC
T ss_pred             HHhcC
Confidence            99876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.01  E-value=3e-10  Score=110.47  Aligned_cols=100  Identities=13%  Similarity=-0.004  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHh
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA-HAM  197 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a-~~~  197 (399)
                      .+.++|..+++.++|++|+.+|+++|.++| +..+|+++|.+|+.+++|++|+.+|+++++++|++..++..++.+ ...
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999 999999999999999999999999999999999999999999988 445


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+.++.+...|.+++.+.|++.
T Consensus       312 ~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          312 KALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHhhCCCCCCC
Confidence            6778889999999999999874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.99  E-value=3.4e-09  Score=85.97  Aligned_cols=85  Identities=8%  Similarity=-0.009  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...+..+...|..++..|+|++|+..|.++++++| +..+|+++|.||..+|++++|+..+.+++.++|+++........
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a  103 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA  103 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45677899999999999999999999999999999 99999999999999999999999999999999999876654444


Q ss_pred             HHHhcC
Q 044737          194 AHAMLG  199 (399)
Q Consensus       194 a~~~lg  199 (399)
                      +....+
T Consensus       104 i~~~~~  109 (117)
T 3k9i_A          104 ILFYAD  109 (117)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            444333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.99  E-value=4.5e-10  Score=114.54  Aligned_cols=101  Identities=18%  Similarity=0.142  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA--  194 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a--  194 (399)
                      +..+..+|..+++.|+|++|+..|++|++++| ++.+|+++|.+|..+++|++|+..+++|++++|++..++..++.+  
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  119 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  119 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999999999999 999999999999999999999999999999999999999999999  


Q ss_pred             HHhcCCHHHHHHHHH-----------HHHhhCCcH
Q 044737          195 HAMLGHWEEAVHDLH-----------VASKIDFDE  218 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~-----------~Al~ldp~~  218 (399)
                      +..+++|++|+..++           +++.++|+.
T Consensus       120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            888999999999999           888888764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.98  E-value=5.6e-09  Score=91.40  Aligned_cols=100  Identities=12%  Similarity=-0.044  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI---NPD---  183 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l---~p~---  183 (399)
                      .+..+...|..++..|+|++|+.+|.+++.+      .+ .+.++.++|.+|..+|++++|+..+.+++.+   .++   
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            4678889999999999999999999999994      34 7899999999999999999999999999998   443   


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          184 -SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       184 -~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                       .+.+++++|.++..+|++++|+..|++++.+..
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence             356899999999999999999999999998743

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.97  E-value=2.9e-09  Score=101.47  Aligned_cols=101  Identities=11%  Similarity=0.009  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------AIMYATRASVYIKMKKPNAAIRDATAALEINPDS----  184 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----  184 (399)
                      ..+..+...|..+.. |+|++|+.+|.+|+.+.+ .      +.+|.++|.+|..+|+|++|+..|++++.+.+.+    
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            346778899999988 999999999999999976 3      6889999999999999999999999999986644    


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                        ..+|+.+|.++..+|++++|+..|++++ ++|+.
T Consensus       193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence              3588899999999999999999999999 99965

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.97  E-value=1.2e-08  Score=98.33  Aligned_cols=100  Identities=10%  Similarity=0.028  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCC-CHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCHHHH
Q 044737          119 AEAKAKAMEAISEG--KLDEAIELSTEAIMLNP-SAIMYATRASVY----IKM---KKPNAAIRDATAALEINPDSAKGY  188 (399)
Q Consensus       119 ~~~k~~g~~~~~~g--~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~----~~l---~~~~~Ai~d~~~Al~l~p~~~~a~  188 (399)
                      ..|..++..+...+  ++++|+.++.++|.++| +..+|+.|+.++    ..+   +++.+++..|+++|+++|.+..+|
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW  147 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVW  147 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34445555555555  55555555555555555 555555555555    444   455555555555555555555555


Q ss_pred             HHHHHHHHhcCCHH--HHHHHHHHHHhhCCcH
Q 044737          189 KTRGMAHAMLGHWE--EAVHDLHVASKIDFDE  218 (399)
Q Consensus       189 ~~~g~a~~~lg~~e--eA~~~l~~Al~ldp~~  218 (399)
                      +.|+.++..++.++  +++..+.+++++||.|
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N  179 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN  179 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence            55555555555555  5555555555555554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.96  E-value=2e-09  Score=105.03  Aligned_cols=126  Identities=15%  Similarity=0.094  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIML------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD-------SA  185 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~-------~~  185 (399)
                      .+..+|..++..|+|++|+..|.+|+.+      .+ .+.+|.++|.+|..++++..|+..+.+|+++.+.       .+
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            4455999999999999999999999997      22 6899999999999999999999999999998433       35


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-------HHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-------IAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-------~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      .++..+|.+|..+|+|++|+..|++|+++.+...       +...+..+....++..++..+|++.-
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6899999999999999999999999999865432       33445555555555566555554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.95  E-value=2.2e-09  Score=101.28  Aligned_cols=99  Identities=18%  Similarity=0.087  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML------NP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----  184 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l------~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----  184 (399)
                      .+..+...|..++..|+|++|+.+|.+|+.+      ++  .+.+|+|+|.+|.++++|++|+..+++|+++.+..    
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            3456888999999999999999999999953      22  56788999999999999999999999999886443    


Q ss_pred             --HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhC
Q 044737          185 --AKGYKTRGMAHAMLG-HWEEAVHDLHVASKID  215 (399)
Q Consensus       185 --~~a~~~~g~a~~~lg-~~eeA~~~l~~Al~ld  215 (399)
                        +.+|+++|.+|..+| .+++|+..|++|+.+.
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence              788999999999999 4699999999998764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.95  E-value=1.2e-08  Score=99.43  Aligned_cols=101  Identities=14%  Similarity=-0.023  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCC
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLN-----P--SAIMYATRASVYIKMKKPNAAIRDATAALE-----INPD  183 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-----P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~-----l~p~  183 (399)
                      ..+..+...|..++..|+|++|+..|.+|+.+.     +  .+.++.++|.+|..++++++|+..+.+|+.     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            456778899999999999999999999999973     2  478899999999999999999999999999     7888


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      .+.+++++|.+|..+|++++|+..|++++++.+
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999854

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.95  E-value=7.6e-09  Score=83.81  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHh
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVE  228 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~  228 (399)
                      ....|.++|.+++..++|+.|+..+++++.++|++..+|+.+|.++..++++++|+..|+++++++|++ .+...+..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999999999999999999999987 4555666666


Q ss_pred             HHHHhHHHHHHHHHHHH
Q 044737          229 PNALRIEEHRRKYDRLR  245 (399)
Q Consensus       229 ~~~~k~~e~~~~ye~l~  245 (399)
                      ...++..++...+++..
T Consensus        95 ~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            66666666666555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.93  E-value=1.1e-08  Score=88.99  Aligned_cols=79  Identities=14%  Similarity=0.076  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          135 DEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--AKGYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       135 ~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--~~a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                      ..|+..|.+++.++| +..+++++|.+|..+|++++|+..|.++++++|++  ..+|+.++.++..+|++++|+..|+++
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            346777888888899 99999999999999999999999999999999986  569999999999999999999999998


Q ss_pred             Hh
Q 044737          212 SK  213 (399)
Q Consensus       212 l~  213 (399)
                      +.
T Consensus       171 l~  172 (176)
T 2r5s_A          171 LY  172 (176)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.93  E-value=7.3e-09  Score=100.08  Aligned_cols=130  Identities=11%  Similarity=0.050  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------AIMYATRASVYIKMKKPNAAIRDATAALEINPDS----  184 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----  184 (399)
                      ..+..+...|..++..|+|++|+..|.+++.+.+ .      +.+|.++|.+|..+|++++|+..+++++.+.+..    
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  264 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  264 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence            3456788899999999999999999999999865 2      4599999999999999999999999999988766    


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-------HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-------EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-------~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                        +.+|+.+|.+|..+|++++|+..|++++++.+..       .+...+..+....++..++..+|++..
T Consensus       265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              7899999999999999999999999999986542       123445555555566666666555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.93  E-value=5.5e-09  Score=103.02  Aligned_cols=91  Identities=15%  Similarity=0.129  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+.++|..+++.++|++|+.+|++||+++| ++.+|+++|.+|..+++|++|+.+|++|++++|++..++..++.++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~  351 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  351 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            356677899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHH
Q 044737          196 AMLGHWEEAVHD  207 (399)
Q Consensus       196 ~~lg~~eeA~~~  207 (399)
                      ..+++++++...
T Consensus       352 ~~~~~~~~a~k~  363 (370)
T 1ihg_A          352 QKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999988887653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.92  E-value=5e-08  Score=90.20  Aligned_cols=121  Identities=16%  Similarity=0.156  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          119 AEAKAKAMEAIS----EGKLDEAIELSTEAIMLNPSAIMYATRASVYIK----MKKPNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       119 ~~~k~~g~~~~~----~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      ..+...|..++.    .+++++|+.+|.+++.++ +..+++++|.+|..    .+++++|+..|+++++++  ++.++++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  115 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCAS  115 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHH
Confidence            467788999999    999999999999999886 68889999999999    999999999999999984  8999999


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHH----HHhHHHHHHHHHH
Q 044737          191 RGMAHAM----LGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPN----ALRIEEHRRKYDR  243 (399)
Q Consensus       191 ~g~a~~~----lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~----~~k~~e~~~~ye~  243 (399)
                      +|.+|..    .+++++|+..|++++++++.. ....+..+...    ..+..+...+|++
T Consensus       116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~~~~~~~~~~~~~~A~~~~~~  175 (273)
T 1ouv_A          116 LGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD-GCTILGSLYDAGRGTPKDLKKALASYDK  175 (273)
T ss_dssp             HHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH-HHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            9999999    999999999999999988443 33344444333    3444444444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.92  E-value=2.8e-08  Score=96.58  Aligned_cols=114  Identities=9%  Similarity=-0.015  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEG--KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g--~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~-~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      .+....|..++..+...+  .|++++.++.++|.++| +..+|+.|+.+...++. +++++..++++|+++|.+..||..
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~  184 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  184 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            344678899999999988  49999999999999999 99999999999999999 699999999999999999999999


Q ss_pred             HHHHHHhc--------------CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHh
Q 044737          191 RGMAHAML--------------GHWEEAVHDLHVASKIDFDE-EIAAVLKKVE  228 (399)
Q Consensus       191 ~g~a~~~l--------------g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~  228 (399)
                      |+.++..+              +.+++++.++.+++.++|+| .++..++.+.
T Consensus       185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999988              56899999999999999998 5566566554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.92  E-value=1.8e-08  Score=79.53  Aligned_cols=93  Identities=17%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEP  229 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~  229 (399)
                      +..|..+|.+++..++|+.|+..+++++.++|+++.+|+.+|.++..+++|++|+..|+++++++|++ .+...+..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999987 44455555555


Q ss_pred             HHHhHHHHHHHHHH
Q 044737          230 NALRIEEHRRKYDR  243 (399)
Q Consensus       230 ~~~k~~e~~~~ye~  243 (399)
                      ..++..+....|+.
T Consensus        84 ~~~~~~~A~~~~~~   97 (118)
T 1elw_A           84 FLNRFEEAKRTYEE   97 (118)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHH
Confidence            55555555444433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.91  E-value=5.1e-09  Score=102.18  Aligned_cols=127  Identities=12%  Similarity=0.037  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------AIMYATRASVYIKMKKPNAAIRDATAALEINPDS-----  184 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-----  184 (399)
                      .+..+...|..++..|+|++|+.+|.+++.+.+ .      +.+|.++|.+|+.++++++|+..+++++.+.+..     
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  301 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV  301 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            455778899999999999999999999999876 2      4589999999999999999999999999998755     


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-------HHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          185 -AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-------IAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       185 -~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-------~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                       ..+|+.+|.+|..+|++++|+..|++++.+.+...       +...+..+....++..++..+|++
T Consensus       302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence             78999999999999999999999999999865431       233444444444455555444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.91  E-value=1.2e-08  Score=84.65  Aligned_cols=100  Identities=18%  Similarity=0.160  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------C
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINP------D  183 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p------~  183 (399)
                      .+..+...|..++..|+|++|+..|.+++.+.+       .+.++.++|.+|..++++++|+..+++++.+.+      .
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            456788999999999999999999999999855       278899999999999999999999999998743      2


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                      .+.++..+|.++..+|++++|+..|++++++..
T Consensus       128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            257899999999999999999999999988753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.90  E-value=8.8e-09  Score=96.00  Aligned_cols=103  Identities=13%  Similarity=0.114  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS----  184 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----  184 (399)
                      ..+..+...|..++..|+|++|+..|.+++.+.+       .+.++.++|.+|..++++++|+..+++++.+.+..    
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  260 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  260 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence            3456778899999999999999999999998855       35699999999999999999999999999987765    


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                        ..+++.+|.++..+|++++|+..|++++.+.+..
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence              7899999999999999999999999999987643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.89  E-value=7.1e-09  Score=80.85  Aligned_cols=66  Identities=20%  Similarity=0.298  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          154 YATRASVYIKMKKPNAAIRDATAALEINPDSAK-GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       154 ~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~-a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+++|.+++..++|.+|+..|+++++++|+++. +|+.+|.+|..+|++++|+..|+++++++|++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            367899999999999999999999999999999 999999999999999999999999999999984

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=2e-08  Score=94.68  Aligned_cols=100  Identities=12%  Similarity=-0.008  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP---S----AIMYATRASVYIKMKKPNAAIRDATAALEI-------NPD  183 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P---~----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-------~p~  183 (399)
                      +.-+...|..++..++|++|+..|.+|+.+.+   +    +.+|.++|.+|..+++|+.|+..|++|+++       .+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            44555689999999999999999999999754   2    558999999999999999999999999953       233


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       184 ~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .+.+|+++|.+|..+|+|++|+..|++|+++.+.
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999998754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.89  E-value=6.2e-08  Score=94.14  Aligned_cols=114  Identities=11%  Similarity=0.031  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCC
Q 044737          118 AAEAKAKAMEAISEGK----------LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK--PNAAIRDATAALEINPDS  184 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~----------~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~--~~~Ai~d~~~Al~l~p~~  184 (399)
                      ...|..++..+...++          +.+++.++..+|..+| +..+|+.|+.++..++.  |++++..|+++|+++|.+
T Consensus        64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN  143 (331)
T 3dss_A           64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN  143 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence            4466667766665554          7899999999999999 99999999999999994  899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHH
Q 044737          185 AKGYKTRGMAHAMLGH-WEEAVHDLHVASKIDFDE-EIAAVLKKVEPNA  231 (399)
Q Consensus       185 ~~a~~~~g~a~~~lg~-~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~  231 (399)
                      ..||..|+.++..++. +++++.++.++++++|.| .++.....+...+
T Consensus       144 y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          144 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999 699999999999999998 5566555555444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.89  E-value=1.4e-08  Score=101.06  Aligned_cols=102  Identities=19%  Similarity=0.129  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM-------------------KKPNAAIRDATAA  177 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l-------------------~~~~~Ai~d~~~A  177 (399)
                      ...+...|..+...|++++|+..|.+|++++| ++.+|.++|.+|...                   ..++.|+..+.++
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  326 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA  326 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45577889999999999999999999999999 999999999998643                   3467899999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          178 LEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       178 l~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ++++|.++.+|+.+|.+|..+|+|++|+..|++++++++++.
T Consensus       327 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          327 DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence            999999999999999999999999999999999999998764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=2.2e-08  Score=82.83  Aligned_cols=99  Identities=15%  Similarity=0.095  Sum_probs=85.2

Q ss_pred             hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHH
Q 044737          147 LNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIA  221 (399)
Q Consensus       147 l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~  221 (399)
                      .+| .+..+..+|.+++..++|..|+..++++++++|++   ..+|+++|.+|..+++|++|+..|+++++++|++ .+.
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            456 89999999999999999999999999999999998   8999999999999999999999999999999987 445


Q ss_pred             HHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          222 AVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       222 ~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      ..+..+....++..+....|++..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            566666666666666666655443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.88  E-value=1.7e-08  Score=98.40  Aligned_cols=99  Identities=18%  Similarity=0.018  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP--------SAIMYATRASVYIKMKKPNAAIRDATAALEINP----  182 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p----  182 (399)
                      ...+..+...|..++..|++..|+.+|.+|+.+.+        .+.++.++|.+|..+++|+.|+..+.+|+++.+    
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  217 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN  217 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence            34566677777777777777777777777776532        255667777777777777777777777777532    


Q ss_pred             --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044737          183 --DSAKGYKTRGMAHAMLGHWEEAVHDLHVASK  213 (399)
Q Consensus       183 --~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~  213 (399)
                        ..+.+|+++|.+|..+|++++|+..|++++.
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              1245677777777777777777777777777

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.87  E-value=2.3e-08  Score=96.26  Aligned_cols=115  Identities=6%  Similarity=-0.041  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHH
Q 044737          118 AAEAKAKAMEA----ISE---GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPN--AAIRDATAALEINPDSAKG  187 (399)
Q Consensus       118 a~~~k~~g~~~----~~~---g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~--~Ai~d~~~Al~l~p~~~~a  187 (399)
                      ...|..++..+    ...   +++.+++.++.++|.++| +..+|+.|+.++.+++.++  +++..|+++|+++|.+..|
T Consensus       103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA  182 (306)
T 3dra_A          103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA  182 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH
Confidence            34677787777    666   799999999999999999 9999999999999999999  9999999999999999999


Q ss_pred             HHHHHHHHHhcCC------HHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHH
Q 044737          188 YKTRGMAHAMLGH------WEEAVHDLHVASKIDFDE-EIAAVLKKVEPNAL  232 (399)
Q Consensus       188 ~~~~g~a~~~lg~------~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~  232 (399)
                      |..|+.++..++.      +++++..+.+++.++|+| .++..+..+.....
T Consensus       183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD  234 (306)
T ss_dssp             HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence            9999999999998      999999999999999998 56666666654433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.87  E-value=1.8e-08  Score=94.95  Aligned_cols=95  Identities=19%  Similarity=0.105  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHh
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVE  228 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~  228 (399)
                      ++..+.++|.+|+..|+|.+|+..|+++|.++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++ .+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999999998 5566677777


Q ss_pred             HHHHhHHHHHHHHHHH
Q 044737          229 PNALRIEEHRRKYDRL  244 (399)
Q Consensus       229 ~~~~k~~e~~~~ye~l  244 (399)
                      ..+++..++...|++.
T Consensus        83 ~~~g~~~~A~~~~~~a   98 (281)
T 2c2l_A           83 LEMESYDEAIANLQRA   98 (281)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            6777777766666554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.86  E-value=4.6e-08  Score=77.74  Aligned_cols=97  Identities=23%  Similarity=0.283  Sum_probs=79.5

Q ss_pred             hCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHH
Q 044737          147 LNP-S-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAV  223 (399)
Q Consensus       147 l~P-~-a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~  223 (399)
                      ++| . +.+|.++|.+|...++++.|+..+.+++.++|++..+|+.+|.++...|++++|+..|+++++++|++ .....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            456 4 78899999999999999999999999999999999999999999999999999999999999999987 34445


Q ss_pred             HHHHhHHHHhHHHHHHHHHH
Q 044737          224 LKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       224 lk~v~~~~~k~~e~~~~ye~  243 (399)
                      +..+....++..+....+++
T Consensus        83 la~~~~~~~~~~~A~~~~~~  102 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQK  102 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHH
Confidence            55555555555555555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.85  E-value=1.3e-07  Score=88.94  Aligned_cols=104  Identities=10%  Similarity=-0.054  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------AIMYATRASVYIKMKKPNAAIRDATAALEINPDS---  184 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---  184 (399)
                      ......+...+..++..++|++|+..|.+++...+ .      ..+++.+|.+|...++|++|+..+.+|+.+.+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            45567788899999999999999999999999877 3      2556788999999999999999999999876544   


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhCCcH
Q 044737          185 ---AKGYKTRGMAHAMLGHWEEAVHDLHVAS---KIDFDE  218 (399)
Q Consensus       185 ---~~a~~~~g~a~~~lg~~eeA~~~l~~Al---~ldp~~  218 (399)
                         ..+|+.+|.+|..+|+|++|+..|++|+   +..+++
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~  191 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence               6799999999999999999999999999   445543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.85  E-value=9e-09  Score=81.44  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD  183 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~  183 (399)
                      .+..+...|..++..|+|++|+..|.++++++| +..+|.++|.+|..+|++++|+..|++++++.|.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            356789999999999999999999999999999 9999999999999999999999999999998764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.84  E-value=8.4e-08  Score=93.80  Aligned_cols=106  Identities=16%  Similarity=0.112  Sum_probs=92.9

Q ss_pred             HHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C-CHHHH
Q 044737          129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK-KPNAAIRDATAALEINPDSAKGYKTRGMAHAML-G-HWEEA  204 (399)
Q Consensus       129 ~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l-g-~~eeA  204 (399)
                      .+....++|+.+++++|.++| +..+|+.|+.++..++ .+++++..++++|.++|++..+|+.|+.++..+ + +++++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence            344455789999999999999 9999999999999999 599999999999999999999999999999998 8 99999


Q ss_pred             HHHHHHHHhhCCcH-HHHHHHHHHhHHHHhH
Q 044737          205 VHDLHVASKIDFDE-EIAAVLKKVEPNALRI  234 (399)
Q Consensus       205 ~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~  234 (399)
                      +..+.++++++|.| .++.....+...+...
T Consensus       145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~  175 (349)
T 3q7a_A          145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL  175 (349)
T ss_dssp             HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            99999999999998 5565555555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.84  E-value=7e-09  Score=90.02  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-----------CHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKL----------DEAIELSTEAIMLNP-SAIMYATRASVYIKMK-----------KPNAAIRD  173 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~----------~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-----------~~~~Ai~d  173 (399)
                      ..++.|.+.|.++...+++          ++||..|++||+++| ++.+|+++|.+|..++           +|++|+..
T Consensus        34 ~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~  113 (158)
T 1zu2_A           34 LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF  113 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHH
Confidence            3466888899999988775          599999999999999 9999999999999985           89999999


Q ss_pred             HHHHHHhCCCCH
Q 044737          174 ATAALEINPDSA  185 (399)
Q Consensus       174 ~~~Al~l~p~~~  185 (399)
                      |++||+++|++.
T Consensus       114 ~~kAl~l~P~~~  125 (158)
T 1zu2_A          114 FQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCH
Confidence            999999999985

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.83  E-value=2.5e-08  Score=94.66  Aligned_cols=98  Identities=15%  Similarity=-0.036  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEIN--PD-SAKGYKTRGM  193 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--p~-~~~a~~~~g~  193 (399)
                      ..+.+|..+++.++|++|+..|++++...+   ...+++++|.++..+|++.+|+..|++++...  |. .+.+++++|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence            556777777788888888888777666532   24577777888888888888888888777544  44 5567778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      ++..+|+.++|...|++++.++|+
T Consensus       217 aL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc
Confidence            888888888888888888888777

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.82  E-value=5e-08  Score=79.14  Aligned_cols=95  Identities=12%  Similarity=-0.060  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH----HHHHHH
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSA---KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE----EIAAVL  224 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~---~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~----~~~~~l  224 (399)
                      ..++++|.+++..++|++|+..|+++++.+|++.   .+|+.+|.++..+|+|++|+..|+++++++|++    .+...+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999998   899999999999999999999999999999986    234566


Q ss_pred             HHHhHHHHhHHHHHHHHHHHHH
Q 044737          225 KKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       225 k~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..+....++..++...|+.+-.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            6666667777777777665544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.80  E-value=3.8e-08  Score=84.64  Aligned_cols=87  Identities=10%  Similarity=-0.053  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 044737          134 LDEAIELSTEAIMLNP-SAIMYATRASVYIKMK---KPNAAIRDATAALEIN-P-DSAKGYKTRGMAHAMLGHWEEAVHD  207 (399)
Q Consensus       134 ~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~---~~~~Ai~d~~~Al~l~-p-~~~~a~~~~g~a~~~lg~~eeA~~~  207 (399)
                      ...+.+.|.+.+..++ +..+.+++|.|+.+..   +..++|..++.+++.+ | +..+++|++|.+|+++++|++|+.+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            3556778888888889 9999999999999998   6679999999999999 7 6789999999999999999999999


Q ss_pred             HHHHHhhCCcHHH
Q 044737          208 LHVASKIDFDEEI  220 (399)
Q Consensus       208 l~~Al~ldp~~~~  220 (399)
                      ++++++++|+|..
T Consensus        94 ~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           94 VRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHHCTTCHH
T ss_pred             HHHHHhcCCCCHH
Confidence            9999999999853

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.80  E-value=3.4e-08  Score=86.29  Aligned_cols=101  Identities=18%  Similarity=0.080  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC-
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML------NP--SAIMYATRASVYIKMKKPNAAIRDATAALEINP--DS-  184 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l------~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p--~~-  184 (399)
                      ..+..+...|..++..|+|++|+..|.+++.+      ++  .+.++.++|.+|..+|++++|+..+++++.+.+  .+ 
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  143 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ  143 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence            45678899999999999999999999999998      44  467899999999999999999999999997632  12 


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 044737          185 ---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF  216 (399)
Q Consensus       185 ---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp  216 (399)
                         +.++..+|.++..+|++++|+..|++++++..
T Consensus       144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence               34678999999999999999999999998754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.79  E-value=2.2e-08  Score=94.67  Aligned_cols=85  Identities=13%  Similarity=0.064  Sum_probs=75.2

Q ss_pred             HHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 044737          129 ISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--AKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       129 ~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      ...+++..|+..|.+++.++| +..+++++|.+|...|++++|+..|.++++++|++  ..++.+++.++..+|++++|+
T Consensus       196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            333334445566777788899 99999999999999999999999999999999999  899999999999999999999


Q ss_pred             HHHHHHHh
Q 044737          206 HDLHVASK  213 (399)
Q Consensus       206 ~~l~~Al~  213 (399)
                      ..|++++.
T Consensus       276 ~~~r~al~  283 (287)
T 3qou_A          276 SXYRRQLY  283 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.79  E-value=5e-08  Score=78.37  Aligned_cols=97  Identities=11%  Similarity=0.071  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH--------HHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE--------EIA  221 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~--------~~~  221 (399)
                      .+..|..+|.+++..++|+.|+..+.+++.++|+++.+|+.+|.++..+|+|++|+..|++++.++|++        .+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            357789999999999999999999999999999999999999999999999999999999999998764        233


Q ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          222 AVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       222 ~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      ..+..+....++..++...|+....
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4455555555666666666555433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.77  E-value=6.3e-08  Score=94.68  Aligned_cols=114  Identities=11%  Similarity=0.020  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEG-KLDEAIELSTEAIMLNP-SAIMYATRASVYIKM-K-KPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       118 a~~~k~~g~~~~~~g-~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l-~-~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...|..++..+...+ .+++++.+++++|.++| +..+|+.|+.++..+ + ++.+++..|+++|+++|.+..+|+.|+.
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~w  167 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHW  167 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456789999999999 59999999999999999 999999999999998 8 9999999999999999999999999999


Q ss_pred             HHHhcCCHH--------HHHHHHHHHHhhCCcH-HHHHHHHHHhHHH
Q 044737          194 AHAMLGHWE--------EAVHDLHVASKIDFDE-EIAAVLKKVEPNA  231 (399)
Q Consensus       194 a~~~lg~~e--------eA~~~l~~Al~ldp~~-~~~~~lk~v~~~~  231 (399)
                      ++..++.++        +++..+.++++++|.| .++.....+...+
T Consensus       168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          168 LYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             HHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            999999988        9999999999999988 5555555554433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.76  E-value=1.2e-07  Score=85.37  Aligned_cols=97  Identities=18%  Similarity=0.020  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMK----KPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~----~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      .+..+...|..++..+++++|+.+|++|+... ++.+++++|.+|.. +    ++.+|+.+|.+|++  +.++.+++++|
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg   92 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA   92 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence            35788899999999999999999999998754 78889999999988 7    89999999999965  57899999999


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhhCCc
Q 044737          193 MAHAM----LGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       193 ~a~~~----lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .+|..    .+++++|+..|++++++.+.
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  121 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSES  121 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence            99998    89999999999999999984

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.72  E-value=6.9e-08  Score=77.50  Aligned_cols=78  Identities=9%  Similarity=0.004  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD--SAKGYKTRGMA  194 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~--~~~a~~~~g~a  194 (399)
                      +..+...|..++..|+|++|+..|.+++.++| +..+|+++|.+|..+|++++|+..|++++.++|.  +..++..+..+
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVF   98 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            35788999999999999999999999999999 9999999999999999999999999999999874  33444444333


Q ss_pred             H
Q 044737          195 H  195 (399)
Q Consensus       195 ~  195 (399)
                      +
T Consensus        99 l   99 (115)
T 2kat_A           99 L   99 (115)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.72  E-value=5.5e-08  Score=98.04  Aligned_cols=99  Identities=15%  Similarity=0.019  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-------  180 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-------  180 (399)
                      .+.............|+|++|+..|.+++.+        +| .+..+.|+|.+|..+|+|++|+..|.++|.+       
T Consensus       297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~  376 (433)
T 3qww_A          297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV  376 (433)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            3445555566666778999999999999986        34 6889999999999999999999999999986       


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          181 -NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       181 -~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                       +|+-+..|+++|.+|..+|+|++|+..|++|+++-
T Consensus       377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence             34456789999999999999999999999999863

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.71  E-value=2.4e-07  Score=90.82  Aligned_cols=109  Identities=18%  Similarity=0.141  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-------------------------------
Q 044737          118 AAEAKAKAMEAISEGK---LDEAIELSTEAIMLNP-SAIMYATRASVYI-------------------------------  162 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~---~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~-------------------------------  162 (399)
                      |-.+..+|..++..++   +.+|+.+|++||+++| ++.+|..++.||+                               
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            4567778888887654   5899999999999999 8888876665552                               


Q ss_pred             -------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737          163 -------------KMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV  227 (399)
Q Consensus       163 -------------~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v  227 (399)
                                   ..|++++|+..+++||.++|+ ..+|..+|.++...|++++|+..|.+|+.++|......+.+.+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l  352 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENG  352 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCc
Confidence                         357777888888888888764 5677777888888888888888888888888877655544443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.68  E-value=2.1e-07  Score=74.50  Aligned_cols=75  Identities=11%  Similarity=0.023  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLN-------P-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~-------P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      +..+...|..++..++|..|+..|.+|++..       + ...+|.++|.||+++|++..|+..++++++++|++..++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4577889999999999999999999999863       2 5788889999999999999999999999999999988877


Q ss_pred             HHH
Q 044737          190 TRG  192 (399)
Q Consensus       190 ~~g  192 (399)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            776

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.68  E-value=1.7e-07  Score=73.93  Aligned_cols=71  Identities=15%  Similarity=0.149  Sum_probs=67.0

Q ss_pred             CC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          148 NP-SAIMYATRASVYIKMKK---PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       148 ~P-~a~~~~nra~a~~~l~~---~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +| ++.++..+|.+++..++   ..+|...+.+||+++|+++.+++.+|.+++..|+|++|+..|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            57 89999999999987766   7999999999999999999999999999999999999999999999999984

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.68  E-value=1.4e-07  Score=84.87  Aligned_cols=108  Identities=14%  Similarity=-0.035  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHH
Q 044737          118 AAEAKAKAMEAISEG----KLDEAIELSTEAIMLNP-SAIMYATRASVYIK----MKKPNAAIRDATAALEINP--DSAK  186 (399)
Q Consensus       118 a~~~k~~g~~~~~~g----~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p--~~~~  186 (399)
                      +..+...|..++. +    ++++|+.+|.+|+.  + ++.+++++|.+|..    .+++.+|+..+.+|+++.+  .++.
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  126 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD  126 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence            4567788888887 6    89999999999954  5 78899999999988    8899999999999999988  4599


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCcHHHHHHHHHHh
Q 044737          187 GYKTRGMAHAM----LGHWEEAVHDLHVASKIDFDEEIAAVLKKVE  228 (399)
Q Consensus       187 a~~~~g~a~~~----lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~  228 (399)
                      +++++|.+|..    .+++++|+..|++|+++..+......|..+.
T Consensus       127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A          127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF  172 (212)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            99999999999    8899999999999999833333444454443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=1.7e-07  Score=95.67  Aligned_cols=126  Identities=12%  Similarity=-0.036  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SA-IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA-  194 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a-~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a-  194 (399)
                      +..+...|..+.+.|++++|+..|.++|.++| +. .+|.+++.++.+++++++|+..|.+|++..|.....|...+.+ 
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~  400 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            34555666677777777777777777777777 64 5777777777777777777777777777777666666655544 


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                      +...|++++|...|+++++++|++ .++..+..+....+++.+.+..|++
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~  450 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  450 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred             HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence            335777777777777777777765 3444444444444444444444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.66  E-value=2.2e-07  Score=93.49  Aligned_cols=100  Identities=17%  Similarity=0.157  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI-----  180 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l-----  180 (399)
                      +..+.........+.++|+|++|+..|.+++.+        +| .+..+.|+|.+|..+|+|++|+..|.++|.+     
T Consensus       284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l  363 (429)
T 3qwp_A          284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF  363 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence            444566667777888999999999999999976        33 5889999999999999999999999999986     


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          181 ---NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       181 ---~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                         +|+-+..|+++|.+|..+|+|++|+..|++|+++
T Consensus       364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence               3444668999999999999999999999999876

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=1.1e-07  Score=90.28  Aligned_cols=126  Identities=17%  Similarity=0.072  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS--AKGYKTRGMAHA  196 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~--~~a~~~~g~a~~  196 (399)
                      -....+..+...|+|++|++.|..++...| .. .++.+|.++++.++|.+|+..+++++...+..  ..+++++|.++.
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence            445668889999999999999999999999 77 99999999999999999999999888764222  458999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhC--Cc-H-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKID--FD-E-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ld--p~-~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      .+|++++|+..|++++...  |. . .+...+..+...+++..+++..|+++..
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999998655  54 3 3445566666667776666666555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.61  E-value=4.9e-07  Score=87.28  Aligned_cols=128  Identities=11%  Similarity=0.075  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEIN--------  181 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--------  181 (399)
                      .+..+...|..++..|+|++|+..|.+++.+.+       ...++.++|.+|..+|+|.+|+..|++++.+.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            456778899999999999999999999999865       24557899999999999999999999999875        


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH------HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          182 PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE------EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       182 p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~------~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      |....++..+|.++..+|++++|...|++++.+.+..      .....+..+....++..+....++..
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456788889999999999999999999999987742      22334555555555555555555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.59  E-value=5.9e-07  Score=91.73  Aligned_cols=110  Identities=10%  Similarity=-0.006  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 044737          135 DEAIELSTEAIMLNP-SAIMYATRASVYIK-------MKKPN-------AAIRDATAALE-INPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       135 ~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~-------l~~~~-------~Ai~d~~~Al~-l~p~~~~a~~~~g~a~~~l  198 (399)
                      ..|+..|.+||..+| +..+|.++|..+..       +|+++       +|+..|++|++ ++|++..+|+.++.++..+
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478889999999999 99999999998886       68876       88999999997 7899999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcHH--HHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          199 GHWEEAVHDLHVASKIDFDEE--IAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~~--~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      |++++|...|+++++++|.+.  ++..+..+....+.+.+++..|++.
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  382 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  382 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999988763  4555555555566666666665554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.51  E-value=1.7e-06  Score=83.41  Aligned_cols=129  Identities=13%  Similarity=0.004  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP--SA----IMYATRASVYIKMKKPNAAIRDATAALEINPDS----  184 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--~a----~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----  184 (399)
                      ...+..+..+|..++..|++++|+..+.+++...|  ..    .++.++|.+|...|+++.|+..+.+++.+.+..    
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   90 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   90 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence            34466778899999999999999999999999988  32    378899999999999999999999999986543    


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--------cH-HHHHHHHHHhHHHHhHHHHHHHHHH
Q 044737          185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDF--------DE-EIAAVLKKVEPNALRIEEHRRKYDR  243 (399)
Q Consensus       185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp--------~~-~~~~~lk~v~~~~~k~~e~~~~ye~  243 (399)
                        ..+++.+|.++..+|+|++|+..|++++++.+        .. .....+..+....+++.+....+++
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  160 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS  160 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence              24578899999999999999999999998763        22 2233455555555555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.42  E-value=2.9e-06  Score=67.67  Aligned_cols=70  Identities=13%  Similarity=-0.081  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEIN-------PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-------p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ++.-++.+|..++..++|..|+.++.+|+++.       ...+..|..+|.+++.+|+++.|+..++++++++|++.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            45677899999999999999999999999973       35688999999999999999999999999999999985

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.41  E-value=6.4e-07  Score=91.63  Aligned_cols=102  Identities=9%  Similarity=-0.066  Sum_probs=88.3

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI---  180 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l---  180 (399)
                      +....+..+.+.|..|...|+|++|+.+|.++|.+        +| .+..|.|+|.+|..+|+|++|+..|.+|+++   
T Consensus       346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~  425 (490)
T 3n71_A          346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV  425 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            44566777889999999999999999999999986        45 7899999999999999999999999999986   


Q ss_pred             --CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          181 --NPDS---AKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       181 --~p~~---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                        -|++   ...+..++.++..++.|.+|...|+++.+-
T Consensus       426 ~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          426 THGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3554   566778899999999999999999887543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.38  E-value=2.3e-06  Score=81.03  Aligned_cols=85  Identities=14%  Similarity=0.039  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhc-CCHHH
Q 044737          134 LDEAIELSTEAIMLNP---SAIMYATRASVYIKM-----KKPNAAIRDATAALEINPDS-AKGYKTRGMAHAML-GHWEE  203 (399)
Q Consensus       134 ~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l-----~~~~~Ai~d~~~Al~l~p~~-~~a~~~~g~a~~~l-g~~ee  203 (399)
                      ...|...+.+||+++|   +..+|..+|..|.++     |+.+.|..+|++||+++|+. ...++..|..++.. +++++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            5789999999999999   577999999999996     99999999999999999975 99999999999884 99999


Q ss_pred             HHHHHHHHHhhCCcH
Q 044737          204 AVHDLHVASKIDFDE  218 (399)
Q Consensus       204 A~~~l~~Al~ldp~~  218 (399)
                      |...+++|+..+|..
T Consensus       259 a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          259 FDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHcCCCCC
Confidence            999999999999873

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.34  E-value=7.3e-06  Score=68.70  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=80.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--
Q 044737          124 KAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIK----MKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM--  197 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~--  197 (399)
                      .|..++....+++|+.+|.+|.+.. ++.+++++|.+|..    .+++.+|+.++++|++.  .++.+++++|.+|..  
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~  107 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGK  107 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCC
Confidence            6677777788889999999998864 67888999999998    88999999999999987  689999999999998  


Q ss_pred             --cCCHHHHHHHHHHHHhhCCcH
Q 044737          198 --LGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       198 --lg~~eeA~~~l~~Al~ldp~~  218 (399)
                        .+++++|+..|++|.++....
T Consensus       108 g~~~d~~~A~~~~~~Aa~~g~~~  130 (138)
T 1klx_A          108 GVVKNEKQAVKTFEKACRLGSED  130 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             CCCcCHHHHHHHHHHHHHCCCHH
Confidence              899999999999999986544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.30  E-value=1.8e-05  Score=79.73  Aligned_cols=93  Identities=14%  Similarity=-0.002  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          120 EAKAKAMEAISE-----GKLDEAIELSTEAIMLNPSAIMYATRASVYIKMK---KPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       120 ~~k~~g~~~~~~-----g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~---~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      .+...|..+...     +++++|+.+|.++++.. +..+++++|.+|...+   ++++|+.+|.++++.  .++.+++++
T Consensus       293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L  369 (490)
T 2xm6_A          293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNL  369 (490)
T ss_dssp             HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            344556666655     66777777777666544 3445666666666644   566677777777665  456677777


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhhC
Q 044737          192 GMAHAM----LGHWEEAVHDLHVASKID  215 (399)
Q Consensus       192 g~a~~~----lg~~eeA~~~l~~Al~ld  215 (399)
                      |.+|..    .+++++|+..|++|++..
T Consensus       370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          370 GNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            777766    667777777777776654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.30  E-value=4.9e-06  Score=69.04  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHhcCCHHHHH
Q 044737          132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNA---AIRDATAALEIN-P-DSAKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~---Ai~d~~~Al~l~-p-~~~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      .....+...|.+++..++ +....+++|.|+++..+...   +|..++..++.+ | ....++|.+|.+|+++|+|..|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            345667788888888888 99999999999999988766   999999998887 5 56789999999999999999999


Q ss_pred             HHHHHHHhhCCcHHHHHHHHH
Q 044737          206 HDLHVASKIDFDEEIAAVLKK  226 (399)
Q Consensus       206 ~~l~~Al~ldp~~~~~~~lk~  226 (399)
                      .+++.+|+++|+|.....|+.
T Consensus        95 ~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999954444433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.27  E-value=7.2e-06  Score=82.50  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          120 EAKAKAMEAISEG---KLDEAIELSTEAIMLNP-SAIMYATRASVYIKM----KKPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       120 ~~k~~g~~~~~~g---~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l----~~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      .+...|..+...|   ++.+|+..|.+++...+ .+..++++|.+|...    +++.+|+..|.+++   |.++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            5678888999999   99999999999999999 999999999999766    79999999999998   8999999999


Q ss_pred             HHH-H--HhcCCHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 044737          192 GMA-H--AMLGHWEEAVHDLHVASKIDFDEEIAAVLKKV  227 (399)
Q Consensus       192 g~a-~--~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v  227 (399)
                      |.+ +  ...+++++|+..|+++++.... .....|..+
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g~~-~A~~~Lg~~  292 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAADQP-RAELLLGKL  292 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHH
Confidence            998 5  5789999999999999987633 333344443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.22  E-value=4.2e-05  Score=77.07  Aligned_cols=122  Identities=10%  Similarity=-0.022  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737          118 AAEAKAKAMEAIS----EGKLDEAIELSTEAIMLNPSAIMYATRASVYIK----MKKPNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       118 a~~~k~~g~~~~~----~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      +..+...|..++.    .+++++|+.+|.+|+... ++.+++++|.+|..    .+++++|+.+|++++..  .++.+++
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~  151 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ  151 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence            3445566666666    667777777777766533 45566667777766    66777777777776654  3566777


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhhCCcHHHHHHHHHHhHH----HHhHHHHHHHHHH
Q 044737          190 TRGMAHAM----LGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPN----ALRIEEHRRKYDR  243 (399)
Q Consensus       190 ~~g~a~~~----lg~~eeA~~~l~~Al~ldp~~~~~~~lk~v~~~----~~k~~e~~~~ye~  243 (399)
                      .+|.+|..    .+++++|+..|+++++... ......|..+...    .....+...+|++
T Consensus       152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  212 (490)
T 2xm6_A          152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQGN-VWSCNQLGYMYSRGLGVERNDAISAQWYRK  212 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence            77777766    6677777777777766531 2233344444333    3334444444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.21  E-value=1.3e-05  Score=67.03  Aligned_cols=90  Identities=17%  Similarity=0.086  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 044737          132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM----LGHWEEAVH  206 (399)
Q Consensus       132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~----lg~~eeA~~  206 (399)
                      +++++|+.+|.++.+... .+.    +|.+|.....++.|+.+|.+|++.  .++.+++++|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            478999999999999987 655    999999999999999999999997  689999999999998    899999999


Q ss_pred             HHHHHHhhCCcHHHHHHHHHHh
Q 044737          207 DLHVASKIDFDEEIAAVLKKVE  228 (399)
Q Consensus       207 ~l~~Al~ldp~~~~~~~lk~v~  228 (399)
                      .|++|.+.... .....|..+.
T Consensus        83 ~~~~Aa~~g~~-~a~~~Lg~~y  103 (138)
T 1klx_A           83 YYSKACGLNDQ-DGCLILGYKQ  103 (138)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHHH
T ss_pred             HHHHHHcCCCH-HHHHHHHHHH
Confidence            99999988433 2233444443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.18  E-value=7.8e-06  Score=70.18  Aligned_cols=71  Identities=13%  Similarity=0.076  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737          119 AEAKAKAMEAISEG---KLDEAIELSTEAIMLN-P--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       119 ~~~k~~g~~~~~~g---~~~~Ai~~y~~Ai~l~-P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      +..++.|..+.+..   ++.++|..++..++.+ |  ...+++++|.+|+++++|+.|++.|+++|+++|++.+|..
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            46788999999988   7779999999999999 8  6999999999999999999999999999999999987664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.10  E-value=1.6e-05  Score=62.45  Aligned_cols=67  Identities=24%  Similarity=0.128  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 044737          118 AAEAKAKAMEAISEGK---LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS  184 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~---~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~  184 (399)
                      +..+...|..++..++   ..+|+.++.+||.++| +..++..+|..+++.|+|.+|+..++++++.+|..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4577888888876665   7999999999999999 99999999999999999999999999999999984

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.03  E-value=8.4e-05  Score=71.28  Aligned_cols=97  Identities=11%  Similarity=-0.073  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP---SAIMYATRASVYIKMKKPNAAIRDATAALEINPD------SAKGYKTR  191 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~------~~~a~~~~  191 (399)
                      +...|.+++..|++++|++.|.++|..+|   +..++..++.+|+++++++.|.+.+.+..+.+|+      .+..++.-
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            45788889999999999999999998885   7889999999999999999999999999999983      33333333


Q ss_pred             HHHHHhcC--CHHHHHHHHHHHHhhCCc
Q 044737          192 GMAHAMLG--HWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       192 g~a~~~lg--~~eeA~~~l~~Al~ldp~  217 (399)
                      +.+....|  ++.+|...|+++....|+
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            44466666  899999999999888887

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=0.0001  Score=72.08  Aligned_cols=104  Identities=7%  Similarity=-0.042  Sum_probs=78.8

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEIN--  181 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~--  181 (399)
                      ..........+...|..|+..|+|++|+..|.+++.+.+       ...++.+++.++...++++.|+..|.+++.+.  
T Consensus        48 ~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  127 (434)
T 4b4t_Q           48 DKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR  127 (434)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            344445566788999999999999999999999988754       13455667777777788888888888877653  


Q ss_pred             ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          182 ----PDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       182 ----p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                          +..+..+.++|.+|..+|+|.+|+..+++++..
T Consensus       128 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q          128 EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence                233667788888888888888888888877665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=2.5e-05  Score=76.42  Aligned_cols=127  Identities=10%  Similarity=0.038  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-S-----------------AIMYATRASVYIKMKKPNAAIRDATAALEIN  181 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~-----------------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~  181 (399)
                      ....+|..+++.|+|.+|++.|.++++.+| .                 ..++.++|.+|..+|+|++|+..+.+++.+.
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999887 2                 2468899999999999999999999999986


Q ss_pred             CCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-------HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          182 PDSAK------GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-------EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       182 p~~~~------a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-------~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +...+      .+..++.++...++++.|+..|++++.+....       .+...|..+....+++.++...+..+.+
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            65533      34557888888999999999999998875432       2344556666666666666666655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.96  E-value=4e-05  Score=76.97  Aligned_cols=85  Identities=12%  Similarity=0.042  Sum_probs=63.2

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHHhCC-CHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          122 KAKAMEAISE----GKLDEAIELSTEAIMLNP-SAIMYATRASV-Y--IKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       122 k~~g~~~~~~----g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a-~--~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...|..+...    +++++|+.+|.+++   | ++.+++++|.+ |  ...+++.+|+.+|.++++.+  ++.+++++|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~  291 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGK  291 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence            4455555444    67888888888877   7 77888888887 3  45778888888888887654  7788888887


Q ss_pred             HHHhcC-----CHHHHHHHHHHHH
Q 044737          194 AHAMLG-----HWEEAVHDLHVAS  212 (399)
Q Consensus       194 a~~~lg-----~~eeA~~~l~~Al  212 (399)
                      +|. .|     ++++|+..|++|.
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh
Confidence            777 45     7888888888877

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.92  E-value=6.8e-05  Score=71.92  Aligned_cols=94  Identities=10%  Similarity=-0.023  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCH
Q 044737          121 AKAKAMEAISEG--KLDEAIELSTEAIMLNPS---AIMYATRASVYIKMKKPNAAIRDATAALEI----------NPDSA  185 (399)
Q Consensus       121 ~k~~g~~~~~~g--~~~~Ai~~y~~Ai~l~P~---a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l----------~p~~~  185 (399)
                      ....+.+.+..|  ++.+|+..|+++....|.   ..++.|   |++++|+|++|..+++.++++          +|+++
T Consensus       179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~  255 (310)
T 3mv2_B          179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP  255 (310)
T ss_dssp             HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence            334454466556  999999999998888873   445555   899999999999999988887          58899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          186 KGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       186 ~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .++.++..+...+|+  +|.+.+.++.+++|+++
T Consensus       256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          256 TFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            999999999999998  89999999999999997

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.90  E-value=0.0001  Score=82.69  Aligned_cols=118  Identities=17%  Similarity=0.088  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINP----------------  182 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p----------------  182 (399)
                      ..+...|..++..|+|++|+.+|++|       ..|..++.||.++|+|++|++.+.+|...++                
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHH
Confidence            35678999999999999999999985       4789999999999999999999999854432                


Q ss_pred             ---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHh--HHHHhHHHHHHHHHH
Q 044737          183 ---------DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVE--PNALRIEEHRRKYDR  243 (399)
Q Consensus       183 ---------~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~--~~~~k~~e~~~~ye~  243 (399)
                               .++..+..++..|..+|.|++|+..|++++.+++.+ .....|..+.  -+-.++.+|.+.|..
T Consensus      1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A         1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred             HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                     134455566777889999999999999999999776 4444444443  234555666665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.84  E-value=7.2e-05  Score=84.00  Aligned_cols=90  Identities=23%  Similarity=0.220  Sum_probs=76.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH--------------------HhC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          124 KAMEAISEGKLDEAIELSTEAI--------------------MLN--P-SAIMYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       124 ~g~~~~~~g~~~~Ai~~y~~Ai--------------------~l~--P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      .|..+...|.|++|+..|.++-                    ++.  . ...+|+++|.++...|+|.+|+..|.+|   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            3777888888888877765543                    222  2 6889999999999999999999999776   


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          181 NPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       181 ~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                        +++.+|.+++.++..+|+|++|++.|..|.+..++.
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence              889999999999999999999999999999888553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.72  E-value=6.7e-05  Score=75.26  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=71.0

Q ss_pred             cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      +.++....+..+.+.|.+|...|+|++|+.+|.++|.+        +| .+..|+|+|.+|..+|+|++|+..+.+|+++
T Consensus       321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            34555677888999999999999999999999999986        45 7899999999999999999999999999986


Q ss_pred             -----CCCCH---HHHHHHHHHHH
Q 044737          181 -----NPDSA---KGYKTRGMAHA  196 (399)
Q Consensus       181 -----~p~~~---~a~~~~g~a~~  196 (399)
                           -|+++   ..+.+++.++.
T Consensus       401 ~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          401 MRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHH
Confidence                 34544   34444554443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.69  E-value=4.8e-05  Score=76.39  Aligned_cols=73  Identities=19%  Similarity=0.150  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      .+...|..++..|+|++|+.+|+++       ..|.++|.|+.++|+|++|++.+.+|     .+++.|.....++..+|
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~  191 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK  191 (449)
T ss_dssp             -------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC
Confidence            6677777778888888888777755       35677777777777777777777777     24555555444444443


Q ss_pred             CHHHH
Q 044737          200 HWEEA  204 (399)
Q Consensus       200 ~~eeA  204 (399)
                      +|+.|
T Consensus       192 ef~lA  196 (449)
T 1b89_A          192 EFRLA  196 (449)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            33333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.65  E-value=0.00045  Score=57.54  Aligned_cols=77  Identities=12%  Similarity=0.005  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737          150 SAIMYATRASVYIKMKKP---NAAIRDATAALEINPD-SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLK  225 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~---~~Ai~d~~~Al~l~p~-~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk  225 (399)
                      ++...++.|.|+++..+.   ..+|..++..++.+|. ....+|.+|.+|+++|+|+.|..+++.+|+++|+|.....|+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            888999999999998865   5789999999999884 578999999999999999999999999999999995444444


Q ss_pred             H
Q 044737          226 K  226 (399)
Q Consensus       226 ~  226 (399)
                      .
T Consensus       119 ~  119 (134)
T 3o48_A          119 S  119 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.64  E-value=0.00041  Score=60.05  Aligned_cols=93  Identities=15%  Similarity=0.087  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC-
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLN---P-------SAIMYATRASVYIKMKKPNAAIRDATAALEINP---DS-  184 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~---P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p---~~-  184 (399)
                      ..+++....++..+.|+.|+-++..++.+.   |       .+.+++.+|.+++..++|..|...|.+||.+.-   .+ 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            356778888999999999999999877663   2       256889999999999999999999999977521   11 


Q ss_pred             ---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044737          185 ---------------------AKGYKTRGMAHAMLGHWEEAVHDLHVA  211 (399)
Q Consensus       185 ---------------------~~a~~~~g~a~~~lg~~eeA~~~l~~A  211 (399)
                                           ....|+.+.||..++++++|+..++..
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                                 257799999999999999999988764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.63  E-value=0.0015  Score=55.00  Aligned_cols=76  Identities=12%  Similarity=0.004  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737          150 SAIMYATRASVYIKMKKP---NAAIRDATAALEINPD-SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLK  225 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~---~~Ai~d~~~Al~l~p~-~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk  225 (399)
                      +....++.|.|+++..+.   ..+|..++..++..|. ....+|.+|.+++++|+|.+|..+++.+|+++|+|.....|+
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            888999999999998865   4789999999998884 567999999999999999999999999999999995433333

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.62  E-value=0.00011  Score=73.74  Aligned_cols=69  Identities=13%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          112 DEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML--------NP-SAIMYATRASVYIKMKKPNAAIRDATAALEI  180 (399)
Q Consensus       112 ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l--------~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l  180 (399)
                      .+....+..+.+.|.+|...|+|++|+.+|.++|.+        +| .+..|.|+|.+|..+|+|++|+..|++|+++
T Consensus       334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            344566778889999999999999999999999987        45 7899999999999999999999999999986

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.52  E-value=0.00041  Score=57.40  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDE---AIELSTEAIMLN-P--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~---Ai~~y~~Ai~l~-P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      +..++.|..+.+..+...   +|.++...++.+ |  .-.+++.+|.+|+++++|..|++.|+.+|+++|+|.+|...+.
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            466788888998887776   999999999888 7  7899999999999999999999999999999999998876655


Q ss_pred             HH
Q 044737          193 MA  194 (399)
Q Consensus       193 ~a  194 (399)
                      .+
T Consensus       116 ~i  117 (126)
T 1nzn_A          116 LI  117 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.47  E-value=0.0012  Score=66.32  Aligned_cols=117  Identities=14%  Similarity=0.085  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      .+..+...|..+++.|+|++|++.|.+|.    +...|...+.++..+++|+.|...... |.++|+   -+..+..+|.
T Consensus       147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA~----~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---~l~~lv~~Ye  218 (449)
T 1b89_A          147 NVSNFGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELINYYQ  218 (449)
T ss_dssp             HTTCHHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---HHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHhccHHHHHHHHHHcC----CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---hHHHHHHHHH
Confidence            44566689999999999999999999992    578899999999999999999765553 445544   4556788899


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhH--HHHhHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEP--NALRIEEHRRKY  241 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~--~~~k~~e~~~~y  241 (399)
                      .+|+|++|+..|++++.+++.. .+...|..+..  +-.++.++.+.|
T Consensus       219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999776 55555555433  234455554443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.43  E-value=0.0027  Score=60.06  Aligned_cols=104  Identities=10%  Similarity=-0.020  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHH------cCCHHHHHHH-----HHHHHHh-CC-CHHHHHHHHHHHHH---c--CC------HHHH
Q 044737          115 REAAAEAKAKAMEAIS------EGKLDEAIEL-----STEAIML-NP-SAIMYATRASVYIK---M--KK------PNAA  170 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~------~g~~~~Ai~~-----y~~Ai~l-~P-~a~~~~nra~a~~~---l--~~------~~~A  170 (399)
                      ...|..+..+|..|..      ...|.++++.     +.+++.. +| ++.+++|.|.++..   +  +.      ...|
T Consensus       103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A  182 (301)
T 3u64_A          103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA  182 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence            4455666666555532      2444444442     3444443 55 88889998888754   2  22      4678


Q ss_pred             HHHHHHHHHhCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCcH
Q 044737          171 IRDATAALEINPD--SAKGYKTRGMAHAML-----GHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       171 i~d~~~Al~l~p~--~~~a~~~~g~a~~~l-----g~~eeA~~~l~~Al~ldp~~  218 (399)
                      ...+++||+++|+  +..+|..+|..|..+     |+.++|...|++|++++|+.
T Consensus       183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            8999999999999  566999999999996     99999999999999999964

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.34  E-value=0.0011  Score=64.99  Aligned_cols=72  Identities=22%  Similarity=0.191  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      ..+...+..++..|++++|+..+++||.++|++..|..+|.++.-.|++++|+..|.+|+.++|... .|++.
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~  349 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI  349 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence            3455567777888999999999999999999888899999999999999999999999999999775 44443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.32  E-value=0.0023  Score=53.26  Aligned_cols=76  Identities=11%  Similarity=-0.022  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKL---DEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~---~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...++.|..+.+..+.   .++|.+++..++.+|  .-.+++.+|.+|+++|+|..|++.|+.+|++.|+|.+|...+..
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            3567778888887654   479999999999999  68999999999999999999999999999999999987765544


Q ss_pred             H
Q 044737          194 A  194 (399)
Q Consensus       194 a  194 (399)
                      +
T Consensus       121 I  121 (134)
T 3o48_A          121 V  121 (134)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.31  E-value=0.0077  Score=59.32  Aligned_cols=112  Identities=14%  Similarity=0.096  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C--------------------HHHHHHHHHHHHHcCCHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP---S--------------------AIMYATRASVYIKMKKPNAAI  171 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P---~--------------------a~~~~nra~a~~~l~~~~~Ai  171 (399)
                      ....+.+...|......++...|+..|.+|+.+.-   .                    ..+...++.+++.+|++.+|+
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            45667777888888889999999999999998742   0                    133346778888999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCcHHHHHHHHH
Q 044737          172 RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK-------IDFDEEIAAVLKK  226 (399)
Q Consensus       172 ~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~-------ldp~~~~~~~lk~  226 (399)
                      ..+.+++..+|-+-.+|..+-.+|...|+..+|+..|+++.+       ++|......+...
T Consensus       192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~  253 (388)
T 2ff4_A          192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  253 (388)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999988754       4676654444444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.29  E-value=0.0024  Score=53.75  Aligned_cols=74  Identities=9%  Similarity=-0.043  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKL---DEAIELSTEAIMLNP--SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~---~~Ai~~y~~Ai~l~P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      +..++.|..+.+..+.   .++|.+++..++..|  .-.+++.+|.+|+++++|..|.+.|+.+|++.|+|.+|...+.
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            3567788888888765   479999999999999  7889999999999999999999999999999999987665443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.14  E-value=0.0071  Score=64.05  Aligned_cols=80  Identities=9%  Similarity=-0.078  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044737          135 DEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAI-RDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVAS  212 (399)
Q Consensus       135 ~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai-~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al  212 (399)
                      ......|.+||..+| +..+|...+..+...++...|+ ..+.+|+..+|.+...|+.++......++++.|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            456788999999999 9999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hh
Q 044737          213 KI  214 (399)
Q Consensus       213 ~l  214 (399)
                      ..
T Consensus       406 ~~  407 (679)
T 4e6h_A          406 DR  407 (679)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.14  E-value=0.0046  Score=65.48  Aligned_cols=120  Identities=9%  Similarity=-0.072  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIML-NP-SAIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l-~P-~a~~~~nra~a~~~l~~-~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      .|...++...+.+..+.|...|.+|+.. .+ ...+|...|....+.++ ++.|...|+++|+..|+++..|...+....
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4566666667788999999999999998 44 67888877777777654 999999999999999999999989999899


Q ss_pred             hcCCHHHHHHHHHHHHhhCCc--H--HHHHHHHHHhHHHHhHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFD--E--EIAAVLKKVEPNALRIEEHRR  239 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~--~--~~~~~lk~v~~~~~k~~e~~~  239 (399)
                      ..++.+.|...|++|+...|+  .  .++......+...+.....+.
T Consensus       516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999884  2  334444444444444333333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.53  E-value=0.051  Score=46.20  Aligned_cols=98  Identities=13%  Similarity=-0.027  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHcCCH------HHHHHHHHHHHHhCC-C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 044737          120 EAKAKAMEAISEGKL------DEAIELSTEAIMLNP-S--------AIMYATRASVYIKMKKPNAAIRDATAALEINPDS  184 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~------~~Ai~~y~~Ai~l~P-~--------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~  184 (399)
                      .|..-....-+.|+.      +.-++.|++|+..-| .        +-+|.+.|.- ..+++.+.|.+.|+.|++++..+
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF   93 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF   93 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH
Confidence            444444444455777      888899999999877 2        5566666644 67799999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          185 AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       185 ~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      ++.|.-.|.--.+.|+...|.+.+.+|+.+.|..
T Consensus        94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            9999999999999999999999999999999976

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.32  E-value=0.22  Score=50.32  Aligned_cols=124  Identities=8%  Similarity=-0.072  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHH------------------------------------
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASV------------------------------------  160 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a------------------------------------  160 (399)
                      ...|...+..+...|+.+.|...|.+||.. | +..+|...+..                                    
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            345677778888889999999999999999 9 64444332221                                    


Q ss_pred             ----HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCcHH-HHHHHHHHhHHHHhH
Q 044737          161 ----YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG-HWEEAVHDLHVASKIDFDEE-IAAVLKKVEPNALRI  234 (399)
Q Consensus       161 ----~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg-~~eeA~~~l~~Al~ldp~~~-~~~~lk~v~~~~~k~  234 (399)
                          +.+.+..+.|...+.+| ...+.....|...|.....++ +++.|...|+.+++..|++. .+...-.....++..
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~  370 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE  370 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence                22355677888888888 443345667777776666666 59999999999999888753 222222223334444


Q ss_pred             HHHHHHHHH
Q 044737          235 EEHRRKYDR  243 (399)
Q Consensus       235 ~e~~~~ye~  243 (399)
                      ...+..|++
T Consensus       371 ~~aR~l~er  379 (493)
T 2uy1_A          371 ENARALFKR  379 (493)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444545444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.24  E-value=0.012  Score=50.78  Aligned_cols=79  Identities=13%  Similarity=-0.021  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C---C--------------------HHHHHHHHHHHHHcCCHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLN---P---S--------------------AIMYATRASVYIKMKKPNA  169 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~---P---~--------------------a~~~~nra~a~~~l~~~~~  169 (399)
                      ..++.+...|+.+|..++|..|...|.+||.+.   +   +                    ..+.+.+|.||.+++++++
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            467788999999999999999999999998651   1   1                    2688999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          170 AIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       170 Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      ||..++.+ -..-..++.-.-+|..|
T Consensus       141 Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            99986542 22335666666666655

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.07  E-value=0.061  Score=50.02  Aligned_cols=63  Identities=25%  Similarity=0.297  Sum_probs=58.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKG  187 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a  187 (399)
                      ...+++.+++++|+......|+.+| ++.+...+...++-.|+|+.|+..++.+.+++|+....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            3467899999999999999999999 99999999999999999999999999999999998654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.74  E-value=0.18  Score=51.24  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044737          134 LDEAIELSTEAIMLN--PSAIMYATRASVYIKMKKPNAAIRDATAALEIN-PDSAKGYKTRGMAHAMLGHWEEAVHDLHV  210 (399)
Q Consensus       134 ~~~Ai~~y~~Ai~l~--P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-p~~~~a~~~~g~a~~~lg~~eeA~~~l~~  210 (399)
                      ++.|++.|.+.+...  |+...|..+-.+|.+.|++++|+..+++..+.. .-+...|..+-.+|...|++++|...|..
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            444555555444432  255555555555555555555555555544432 11344455555555555555555555554


Q ss_pred             HHhh--CCcHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          211 ASKI--DFDEEIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       211 Al~l--dp~~~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      ..+.  .|+..+...|-.+.-+.+++.++.+.++++
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            4432  344443333333333334444444433333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.029  Score=59.88  Aligned_cols=79  Identities=11%  Similarity=0.123  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHh--------C----------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          134 LDEAIELSTEAIML--------N----------P-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       134 ~~~Ai~~y~~Ai~l--------~----------P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      =-+||....++|+.        .          | ...++.--+.-++..++|+-|+..+.+|+.+-|..-..|++++.+
T Consensus       301 Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~v  380 (754)
T 4gns_B          301 ELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARC  380 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence            34677877777742        1          2 234566667777889999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 044737          195 HAMLGHWEEAVHDLHVAS  212 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al  212 (399)
                      |..+++|+.|+-.+.-+-
T Consensus       381 Yi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          381 HIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccHHHHHHHHhcCC
Confidence            999999999998877663

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.50  E-value=0.43  Score=48.32  Aligned_cols=107  Identities=7%  Similarity=0.039  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLN--PSAIMYATRASVYIKMKKPNAAIRDATAALEINP-DSAKGYKTRGMAHA  196 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~--P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p-~~~~a~~~~g~a~~  196 (399)
                      .+...-..+.+.|++++|+..|.+.....  |+...|..+-.+|.+.|++++|++.++..++..- -+...|..+-.+|.
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            45666778899999999999999988764  4999999999999999999999999999887532 35678888999999


Q ss_pred             hcCCHHHHHHHHHHHHh--hCCcHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASK--IDFDEEIAAVLKK  226 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~--ldp~~~~~~~lk~  226 (399)
                      ..|++++|...|++..+  +.|+..+...+..
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~  218 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE  218 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence            99999999999998765  4577665544444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.35  E-value=0.27  Score=49.72  Aligned_cols=92  Identities=12%  Similarity=-0.072  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK-KPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~-~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ..|..-+....+.+.++.|...|.+| ...+ ...+|...|...+.++ +++.|...++.+++..|+.+..|...+....
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~  365 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL  365 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            44566666666778899999999999 4333 7788888787777666 5999999999999999999988888888888


Q ss_pred             hcCCHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVA  211 (399)
Q Consensus       197 ~lg~~eeA~~~l~~A  211 (399)
                      .+|+.+.|...|+++
T Consensus       366 ~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          366 RIGDEENARALFKRL  380 (493)
T ss_dssp             HHTCHHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHHHH
Confidence            999999999999998

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=94.72  E-value=0.017  Score=41.41  Aligned_cols=46  Identities=15%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             chhccCCCHHHHh----hcCCHHHHHHHHHHhhChHHHHHhhcCCcHHHHHHHHHHhcCC
Q 044737          342 DFSKILNDPELMA----AFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG  397 (399)
Q Consensus       342 ~~~~~~~dpe~~~----~~~dp~~~~~~~~~~~np~~~~~~~~~p~~~~~~~~l~~~~~~  397 (399)
                      .+..+|+||++++    +++||.   .++.+++||..+.       +...+..+++++||
T Consensus        13 e~~~~m~dP~~~~~lq~i~~NP~---~~~~~~~dP~v~~-------~~~~L~~~~~g~~~   62 (62)
T 2lnm_A           13 DVAMAFQNPRVQAALMECSENPM---NIMKYQNDKEVMD-------VFNKISQLFPGMTG   62 (62)
T ss_dssp             HHHHHTTSHHHHHHHHHHTTCGG---GHHHHTTCHHHHH-------HHHHHHHHSSSCCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHCHH---HHHHHHhChHHHH-------HHHHHHHHhCCCCC
Confidence            6778999999987    555665   3455788888663       45555666677665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.60  E-value=0.077  Score=56.58  Aligned_cols=59  Identities=15%  Similarity=0.080  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAA  177 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~A  177 (399)
                      .-+..++..+.+.++|+.|+.+..+|+...| ....|+.++.||+.+++|+.|+-.++-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3566778889999999999999999999999 9999999999999999999999877665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.89  E-value=0.45  Score=44.18  Aligned_cols=61  Identities=15%  Similarity=0.030  Sum_probs=57.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       159 ~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ..+++.++..+|+..+...|+.+|.+++....+-..++..|+|+.|..-++.+.+++|+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            3457789999999999999999999999999999999999999999999999999999974

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.16  Score=50.41  Aligned_cols=95  Identities=12%  Similarity=-0.078  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC---HHHHHH
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP----SAIMYATRASVYIKMKKPNAAIRDATAALEI---NPDS---AKGYKT  190 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l---~p~~---~~a~~~  190 (399)
                      +..+|..+++.|+++.|++.|.++.....    ...++.....+++..++|..+...+.+|..+   .+++   .+....
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            45789999999999999999999988754    5788888889999999999999999998665   2333   234555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          191 RGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       191 ~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                      .|.++...++|..|...|..++.-.
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhChHHHHHHHHHHHhccC
Confidence            6778889999999999998876543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.70  E-value=0.99  Score=44.32  Aligned_cols=91  Identities=13%  Similarity=-0.007  Sum_probs=74.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLN-----P--SAIMYATRASVYIKMKKPNAAIRDATAALEIN---PDS----AKGY  188 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~-----P--~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~---p~~----~~a~  188 (399)
                      ..|..|+..|+|.+|+..+++.++..     +  ...+|.....+|..++++..+...+++|....   +..    +...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            67899999999999999999888752     2  57888999999999999999999999886653   122    2345


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHHHHHh
Q 044737          189 KTRGMAHA-MLGHWEEAVHDLHVASK  213 (399)
Q Consensus       189 ~~~g~a~~-~lg~~eeA~~~l~~Al~  213 (399)
                      ..-|.+|. ..++|..|..+|-.+++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            55688888 89999999999988863

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.25  E-value=2  Score=37.20  Aligned_cols=92  Identities=18%  Similarity=0.123  Sum_probs=69.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC---------------CCCH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALE--IN---------------PDSA  185 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~--l~---------------p~~~  185 (399)
                      ..+..++-.|.|..|+-++.   .+| .+...+-.+.||.++++|..|+..++..|+  ++               |.+-
T Consensus        38 L~~I~LyyngEY~R~Lf~L~---~lN-T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk  113 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLH---KLN-TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE  113 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH---TCC-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH
T ss_pred             hhhhhhhhcchHhHHHHHHH---hcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH
Confidence            34666777788887776542   233 455555678899999999999999999983  32               3333


Q ss_pred             H-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          186 K-GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       186 ~-a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      . .|..+|.++..+|+.++|+..|......+|=-
T Consensus       114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf  147 (242)
T 3kae_A          114 EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF  147 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence            3 45667999999999999999999999988754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.22  E-value=0.71  Score=46.81  Aligned_cols=79  Identities=11%  Similarity=-0.079  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      .-+...|..+.-...+..|..+|.+|+.++| +...|..+|..+...+++-.|+-+|.++|.....++.+.-++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            4567889988888999999999999999999 999999999999999999999999999999988899999998888764

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=91.97  E-value=0.043  Score=40.47  Aligned_cols=14  Identities=21%  Similarity=0.543  Sum_probs=6.4

Q ss_pred             hhccCCCHHHHhhc
Q 044737          343 FSKILNDPELMAAF  356 (399)
Q Consensus       343 ~~~~~~dpe~~~~~  356 (399)
                      +..+|+||++++++
T Consensus        22 i~~im~DP~~~~~l   35 (71)
T 2llw_A           22 VAAIMQDPVMQSIL   35 (71)
T ss_dssp             HHHHHTCTHHHHHH
T ss_pred             HHHHhCCHHHHHHH
Confidence            34444444444433

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=91.75  E-value=0.15  Score=39.37  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC
Q 044737          256 ERLRRRAEAQAAYEKAKKEEQSSS  279 (399)
Q Consensus       256 er~~~~~~A~~~~~~~~k~~~~d~  279 (399)
                      ++++++.+|++++.++.+|..||.
T Consensus        46 ~~f~~i~~Ay~~L~d~~~R~~YD~   69 (92)
T 2o37_A           46 EKFKEISEAFEILNDPQKREIYDQ   69 (92)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHH
Confidence            478889999999999999999983

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.40  E-value=0.92  Score=44.27  Aligned_cols=61  Identities=15%  Similarity=0.161  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALE  179 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~  179 (399)
                      ..+...+..++..|++.+|+..+..++..+| +-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455677888899999999999999999999 999999999999999999999999988755

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.23  E-value=1.1  Score=45.26  Aligned_cols=66  Identities=9%  Similarity=0.074  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          152 IMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       152 ~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .++..+|........+..|..+|.+|+.++|++...|..+|.+....+++-+|+-.|.+++.....
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P  218 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence            355677777777888999999999999999999999999999999999999999999999876543

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=89.06  E-value=0.071  Score=39.27  Aligned_cols=19  Identities=21%  Similarity=0.420  Sum_probs=9.7

Q ss_pred             cCCCHHH-HhhcCCHHHHHH
Q 044737          346 ILNDPEL-MAAFSDPEVMAA  364 (399)
Q Consensus       346 ~~~dpe~-~~~~~dp~~~~~  364 (399)
                      +|++|++ ..+++||+++..
T Consensus         9 ~f~~p~~~~kl~~dP~t~~~   28 (71)
T 2llv_A            9 LFADPNLIENLKKNPKTSEM   28 (71)
T ss_dssp             HHHSSSCHHHHHHSSTTHHH
T ss_pred             hccChHHHHHHHcChHHHHH
Confidence            5556654 235555555444

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=87.80  E-value=2.5  Score=31.86  Aligned_cols=37  Identities=30%  Similarity=0.232  Sum_probs=32.5

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      +......|..+..+|..+=+.|+|++|+.+|.+||..
T Consensus        12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4556788899999999999999999999999988875

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.74  E-value=8.5  Score=38.08  Aligned_cols=99  Identities=18%  Similarity=0.077  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC-
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIML----NP---SAIMYATRASVYIKMKKPNAAIRDATAALE---INPDS-  184 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l----~P---~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~---l~p~~-  184 (399)
                      ..+.-....+..++..|+|.+|...+.....-    ..   ...+|......|+..++|..|...++++..   -.+.. 
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            34555667889999999999999998876542    22   477888889999999999999999988632   23333 


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044737          185 ---AKGYKTRGMAHAMLGHWEEAVHDLHVASKI  214 (399)
Q Consensus       185 ---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~l  214 (399)
                         ...|...|..|...++|.+|..+|..++..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               245666788999999999999999999764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.84  E-value=4.8  Score=41.93  Aligned_cols=28  Identities=14%  Similarity=0.097  Sum_probs=17.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAA  177 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~A  177 (399)
                      +...|.++|..+++.++++.|+..|.++
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4556666666666666666666666553

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=85.60  E-value=4.2  Score=30.51  Aligned_cols=34  Identities=29%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      ....|..+..+|..+=+.|+|.+|+.+|.+||..
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4668888999999999999999999999988875

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=85.02  E-value=3.1  Score=43.31  Aligned_cols=84  Identities=14%  Similarity=0.001  Sum_probs=58.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737          130 SEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH  209 (399)
Q Consensus       130 ~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~  209 (399)
                      ..+...++...+.+++....+..+.-+++...++.++|..|...+.+.-.-......+.|++|.++..+|+.++|...|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~  343 (618)
T 1qsa_A          264 GNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH  343 (618)
T ss_dssp             STTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33434455556655544333333344444445677999999998876655444568899999999999999999999998


Q ss_pred             HHHh
Q 044737          210 VASK  213 (399)
Q Consensus       210 ~Al~  213 (399)
                      ++..
T Consensus       344 ~~a~  347 (618)
T 1qsa_A          344 QLMQ  347 (618)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8865

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=84.89  E-value=6.3  Score=30.18  Aligned_cols=30  Identities=27%  Similarity=0.292  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAI  145 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai  145 (399)
                      +.|..+..+|..+=+.++|++|+.+|..||
T Consensus        13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Ai   42 (93)
T 1wfd_A           13 TAAVAVLKRAVELDAESRYQQALVCYQEGI   42 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            344455555555555555555555554444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=84.87  E-value=15  Score=40.59  Aligned_cols=98  Identities=9%  Similarity=-0.126  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIM-----LNPSAIMYATRASVYIKMKKPNAAIRDATAALEIN-PDSAKGYKT  190 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~-----l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~-p~~~~a~~~  190 (399)
                      ....+...-+.+++.|+.++|...|.+..+     ..|+...|+.+-..|.+.|++++|+..+.+..+.. .-+...|..
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345677788899999999999999976442     34599999999999999999999999999887753 236677888


Q ss_pred             HHHHHHhcCCH-HHHHHHHHHHHhh
Q 044737          191 RGMAHAMLGHW-EEAVHDLHVASKI  214 (399)
Q Consensus       191 ~g~a~~~lg~~-eeA~~~l~~Al~l  214 (399)
                      +-.++.+.|+. ++|...|++....
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            88889998885 6787777766543

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=84.83  E-value=0.18  Score=48.43  Aligned_cols=28  Identities=11%  Similarity=0.156  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044737          253 VERERLRRRAEAQAAYEKAKKEEQSSSS  280 (399)
Q Consensus       253 ~~~er~~~~~~A~~~~~~~~k~~~~d~g  280 (399)
                      ...++++++.+|++++.++.+|+.||.-
T Consensus        65 ~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   92 (329)
T 3lz8_A           65 DAEAKFKDLAEAWEVLKDEQRRAEYDQL   92 (329)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence            3456899999999999999999999964

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=84.72  E-value=13  Score=38.55  Aligned_cols=81  Identities=16%  Similarity=-0.028  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      ..|+..|..+.+.++++.|+.+|.++-..       ..+..+|...++.+........+... .++-.|    ..++..+
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~-------~~l~~l~~~~~~~~~~~~~~~~a~~~-~~~~~A----~~~~~~~  749 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDL-------ESLFLLHSSFNNKEGLVTLAKDAETT-GKFNLA----FNAYWIA  749 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCH-------HHHHHHHHHTTCHHHHHHHHHHHHHT-TCHHHH----HHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccCh-------hhhHHHHHHcCCHHHHHHHHHHHHHc-CchHHH----HHHHHHc
Confidence            46788999999999999999999865322       22333344455555444433333332 222111    1245556


Q ss_pred             CCHHHHHHHHHHH
Q 044737          199 GHWEEAVHDLHVA  211 (399)
Q Consensus       199 g~~eeA~~~l~~A  211 (399)
                      |++++|++.|.+.
T Consensus       750 g~~~~a~~~~~~~  762 (814)
T 3mkq_A          750 GDIQGAKDLLIKS  762 (814)
T ss_dssp             TCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHc
Confidence            6666666655543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=84.51  E-value=4  Score=35.32  Aligned_cols=80  Identities=11%  Similarity=-0.013  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      .|+..|..++..|+++-|..+|.++=.+       ..+...|.-.|+-+.-......|...+ ++    .....++..+|
T Consensus        36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-------~~L~~Ly~~tg~~e~L~kla~iA~~~g-~~----n~af~~~l~lG  103 (177)
T 3mkq_B           36 TWERLIQEALAQGNASLAEMIYQTQHSF-------DKLSFLYLVTGDVNKLSKMQNIAQTRE-DF----GSMLLNTFYNN  103 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHHHHHHHHTT-CH----HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhCCH-------HHHHHHHHHhCCHHHHHHHHHHHHHCc-cH----HHHHHHHHHcC
Confidence            4556666666666666666665543221       222223333344333222222222221 11    22233566677


Q ss_pred             CHHHHHHHHHHH
Q 044737          200 HWEEAVHDLHVA  211 (399)
Q Consensus       200 ~~eeA~~~l~~A  211 (399)
                      +++++++.|.+.
T Consensus       104 dv~~~i~lL~~~  115 (177)
T 3mkq_B          104 STKERSSIFAEG  115 (177)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHC
Confidence            777777666543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.66  E-value=3.2  Score=46.33  Aligned_cols=88  Identities=11%  Similarity=-0.011  Sum_probs=70.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044737          122 KAKAMEAISEGKLDEAIELSTEAIM--------------------LNP----SAIMYATRASVYIKMKKPNAAIRDATAA  177 (399)
Q Consensus       122 k~~g~~~~~~g~~~~Ai~~y~~Ai~--------------------l~P----~a~~~~nra~a~~~l~~~~~Ai~d~~~A  177 (399)
                      +-+|..++..|+|++|+.+|.+|-.                    ..+    ...+|......+-+.+.++.+++.+..|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6789999999999999999987731                    111    3567778888888899999999999999


Q ss_pred             HHhCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 044737          178 LEINP-DSA----KGYKTRGMAHAMLGHWEEAVHDLH  209 (399)
Q Consensus       178 l~l~p-~~~----~a~~~~g~a~~~lg~~eeA~~~l~  209 (399)
                      |+.-+ +..    ..|.+.=.++..+++|++|...+.
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            98754 332    267888889999999999977664

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=83.64  E-value=8.2  Score=29.11  Aligned_cols=30  Identities=33%  Similarity=0.278  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIM  146 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~  146 (399)
                      .|..+..+|..+-..|+|++|+.+|..||.
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie   44 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGID   44 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455555555555555555555554443

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=83.34  E-value=8.9  Score=30.74  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIM  146 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~  146 (399)
                      .+..|..+..+|..+=..++|++|+.+|..||.
T Consensus        14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie   46 (117)
T 2cpt_A           14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ   46 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            445556666666666666666666666655443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=81.52  E-value=5.2  Score=33.86  Aligned_cols=68  Identities=15%  Similarity=-0.058  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAK  186 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~  186 (399)
                      +.-|..-| .+...++.++|.+.|..++.++. .+.+|...|.--++.++...|.+.+.+||.+.|....
T Consensus        61 I~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           61 ARIQVRFA-ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            33444444 23555899999999999999988 9999999999999999999999999999999987653

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.44  E-value=1.3  Score=34.28  Aligned_cols=28  Identities=18%  Similarity=0.163  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044737          254 ERERLRRRAEAQAAYEKAKKEEQSSSSE  281 (399)
Q Consensus       254 ~~er~~~~~~A~~~~~~~~k~~~~d~g~  281 (399)
                      ..++++++.+|++++.++.+|..||..-
T Consensus        56 a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           56 AAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            4568899999999999999999999643

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=81.15  E-value=25  Score=33.53  Aligned_cols=95  Identities=15%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h---CC---CHHHHHHHHHHHHHcC-------------------C--
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIM-L---NP---SAIMYATRASVYIKMK-------------------K--  166 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~-l---~P---~a~~~~nra~a~~~l~-------------------~--  166 (399)
                      -+.-+.++..++.|.+.++|++|++++..... +   .-   -+.+-..+..+|.+.+                   .  
T Consensus        32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~  111 (336)
T 3lpz_A           32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE  111 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred             cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence            34456788888999999999999997544433 2   11   1122222223333322                   1  


Q ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044737          167 ------PNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH  209 (399)
Q Consensus       167 ------~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~  209 (399)
                            ...||.+..+.=...--++..+..+|..|..-++|.+|...|-
T Consensus       112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence                  1223333332111122457788888999999999999988773

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=80.63  E-value=12  Score=27.85  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      ...|..+..+|...=..|+|++|+.+|..||.+
T Consensus        10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445566666666666666666666666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	5e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.004
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-04
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	4e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	7e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.004
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.1 bits (165), Expect = 5e-14
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 8/173 (4%)

Query: 117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDAT 175
           +A E K +        K  EA      AI  NP  A+ Y  RA  Y+KM++P  A+ D  
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 176 AALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID------FDEEIAAVLKKVEP 229
            ALE++  S K +   G     +  ++EA+ +L  A  +       F ++I + L+  + 
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

Query: 230 NALRIEEHRRKYDRLRRERE-ERKVERERLRRRAEAQAAYEKAKKEEQSSSSE 281
                 E RR +          R +  ER R   E Q  +E  + +    + +
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQ 175

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 5e-10
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
           A      G  + A     +     P +  +    +S++ + ++ + +   +T A++ NP 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLH 209
            A+ Y   G  +   G  +EA+    
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYR 91

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 132 GKLDEAIELSTEAIMLNPSAIMYA-TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G + EA +    A+ L P+        A++  +      A+R    ALE+ P+ A  +  
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 191 RGMAHAMLGHWEEAVHDLHVASKID 215
                   G  +EA+     A +I 
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRIS 369

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
           G ++EA+ L  +A+ + P  A  ++  ASV  +  K   A+     A+ I+P  A  Y  
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378

Query: 191 RGMAHAMLG 199
            G     + 
Sbjct: 379 MGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
              D A+     A+ L+P+ A+++   A VY +    + AI     A+E+ P     Y  
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276

Query: 191 RGMAHAMLGHWEEAVHDLHVA 211
              A    G   EA    + A
Sbjct: 277 LANALKEKGSVAEAEDCYNTA 297

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP 182
            A     +G +D AI+    AI L P     Y   A+   +      A      AL + P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 183 DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIA 221
             A             G+ EEAV     A ++  +   A
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 10/58 (17%), Positives = 16/58 (27%)

Query: 158 ASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           A    +     AA R         PD+          H      + + H   +A K +
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 11/72 (15%), Positives = 25/72 (34%)

Query: 150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLH 209
            A+ ++    V+    +   AI     A+ ++P+    Y   G        ++ AV    
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 210 VASKIDFDEEIA 221
            A  +  +  + 
Sbjct: 228 RALSLSPNHAVV 239

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
              A+SEG+L +A+EL  EAI  +P  A + ++   +         A      ++++ P+
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-----IAAVLKKVEPNALRIEEHR 238
              G              ++       A  +  +EE     ++  L  V  +  ++ E  
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 239 RKYDRLRREREE 250
            + + LR+E+  
Sbjct: 123 LQIEELRQEKGF 134

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 15/127 (11%), Positives = 42/127 (33%), Gaps = 3/127 (2%)

Query: 156 TRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
           T+    +   +   A+     A++ +P  A    +      + G +E A   L  + K+ 
Sbjct: 1   TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

Query: 216 FDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEE 275
            +    A   +   + ++  + R+ + +     +      E  +       +      E+
Sbjct: 61  PEYLPGASQLR---HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ 117

Query: 276 QSSSSER 282
            S  + +
Sbjct: 118 VSELALQ 124

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNA 169
            D   + A E K +A +       + AI+  ++AI LNP +AI Y  R+  Y++ +    
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 62

Query: 170 AIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIA-------- 221
           A+ DAT A+E++    KGY  R  ++  LG +  A+ D     K+   ++ A        
Sbjct: 63  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122

Query: 222 -AVLKKVEPNALRIEEHRRKY 241
             V +K    A+  +EH+R  
Sbjct: 123 KIVKQKAFERAIAGDEHKRSV 143

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATA 176
           A + K    +A  +   D A++   +A  L+P +      +A+VY +    N        
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 177 ALEINPDSAKGYKT-------RGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVE 228
           A+E+  ++ + Y+         G ++     +++A+H  + +       ++    ++ E
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 16/170 (9%), Positives = 45/170 (26%), Gaps = 4/170 (2%)

Query: 74  KEEEEDEIVESDIELEGDIVEADNDPPQKMGDSSAEVTDEKREAAAEAKAKAMEAISEGK 133
           K        E    L   +  A      ++      V +       ++    + +  +  
Sbjct: 77  KNRANPNRSEVQANLSLFLEAASGFY-TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH 135

Query: 134 LDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM 193
               ++  + +               +     + + A      A ++ P + + Y    +
Sbjct: 136 TSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI 194

Query: 194 AHAMLGHWEEAVHDLH--VASKIDFDEEIAAVLKKVEPNALRIEEHRRKY 241
             +  G     +      +A K  F      + K +       +E + K+
Sbjct: 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKW 244

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 13/164 (7%), Positives = 34/164 (20%), Gaps = 13/164 (7%)

Query: 119 AEAKAKAMEAISEGKLDEAIELSTEAIML----NPSAIMYATRASVYIKMKKPNAAIRDA 174
           A  K K  + +        I             N S +       +          +++ 
Sbjct: 51  ALDK-KVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQEL 109

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE---EIAAVLKKVEPNA 231
                ++          G+      H    V     +           +  + +      
Sbjct: 110 CTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRN-QT 168

Query: 232 LRIEEHRRKYDRLRREREERKVER----ERLRRRAEAQAAYEKA 271
            + E + R   +L     +   +                 Y ++
Sbjct: 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 47.6 bits (112), Expect = 3e-07
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS----------------AIMY 154
           T EK E AA  K K       GK  +A+    + +                        +
Sbjct: 8   TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 67

Query: 155 ATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKI 214
              A  Y+K+++   A+     AL ++  + KG   RG A  ++  +E A  D     ++
Sbjct: 68  LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127

Query: 215 D-FDEEIAAVLKKVEPNALRIEEHRRKY 241
           +  ++     +   +  A    E  R+ 
Sbjct: 128 NPQNKAARLQIFMCQKKAKEHNERDRRT 155

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 9e-07
 Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 12/149 (8%)

Query: 124 KAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINP 182
           + +  + EG L  A+ L   A+  +P     +    +   + ++   AI      LE+ P
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84

Query: 183 DSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYD 242
           D+        ++        +A   L    +            +       +   +R   
Sbjct: 85  DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144

Query: 243 RLRREREERKVERERLRRRAEAQAAYEKA 271
            L  +               E +  +  A
Sbjct: 145 SLLSD-----------SLFLEVKELFLAA 162

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 2/77 (2%)

Query: 135 DEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA 194
           D+  +   E  + +             ++      A+    AA++ +P   + ++  G  
Sbjct: 5   DKGYQFEEENPLRDHPQPFE--EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62

Query: 195 HAMLGHWEEAVHDLHVA 211
            A       A+  L   
Sbjct: 63  QAENEQELLAISALRRC 79

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDA 174
           E   E K K  +A+S G +D+A++  +EAI L+P   ++Y+ R++ Y K      A  D 
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKID-FDEEIAAVLKKVE 228
              +++ PD  KGY  +  A   L  +EEA        K +  + ++   L+ +E
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 130 SEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKG 187
            + + + A +L+ +AI LN +   ++  R  +   ++K  +  +   TA +E  P + + 
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114

Query: 188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFD 217
           +  R +    L    + +  +      D  
Sbjct: 115 WHHRRVLVEWLRDPSQELEFIADILNQDAK 144

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 144 AIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA-HAMLGHW 201
            I+ +     +Y    +V  + ++   A +    A+E+N  +   +  R +   ++    
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 202 EEAVHDL 208
            E ++ +
Sbjct: 95  HEEMNYI 101

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 21/170 (12%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAA 170
           ++EK E +   K +      EGK  +A+    + +        ++   +   +  +  + 
Sbjct: 6   SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 65

Query: 171 IRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPN 230
           +  A   L++   SA              + +           ++  E   A  +K    
Sbjct: 66  LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK---- 121

Query: 231 ALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKAKKEEQSSSS 280
            L++  + +   + +    ++++ R+  R +      +E+  +EE  + +
Sbjct: 122 VLQLYPNNKAA-KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKA 170

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 5/69 (7%)

Query: 154 YATRASVYIKMKKPNAAIRDATAALEINPDS-----AKGYKTRGMAHAMLGHWEEAVHDL 208
            A RA V I    P+ A R A  ALE  P              G      G    ++  +
Sbjct: 15  NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALM 74

Query: 209 HVASKIDFD 217
               ++   
Sbjct: 75  QQTEQMARQ 83

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 29/135 (21%)

Query: 133 KLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRG 192
           K D AI+   EA++                     N  I      L+    + +      
Sbjct: 85  KYDLAIKDLKEALIQLR-----------------GNQLIDYKILGLQFKLFACEVLYNIA 127

Query: 193 MAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPNALRIEEHRRKYDRLRREREERK 252
             +A    W++A   L +A+ +           K EP   +I++      + ++  E   
Sbjct: 128 FMYAKKEEWKKAEEQLALATSM-----------KSEPRHSKIDKAMECVWK-QKLYEPVV 175

Query: 253 VERERLRRRAEAQAA 267
           +   RL R  E Q A
Sbjct: 176 IPVGRLFRPNERQVA 190

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 7/92 (7%), Positives = 20/92 (21%), Gaps = 1/92 (1%)

Query: 125 AMEAISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPD 183
              A      D++       ++                  ++    + ++       N  
Sbjct: 215 VQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274

Query: 184 SAKGYKTRGMAHAMLGHWEEAVHDLHVASKID 215
                     A   L + +E +        +D
Sbjct: 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 25/171 (14%)

Query: 113 EKREAAAEAKAKAMEAISEGKL-DEAIELSTEAIMLNPS-AIMYATR----------ASV 160
           +K +    A     +    G+L +  +EL+++ +  NP  A ++  R           S 
Sbjct: 23  QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSP 82

Query: 161 YIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEI 220
                   A +    + L +NP S   +  R    + L              + ++  E+
Sbjct: 83  EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP-------------EPNWAREL 129

Query: 221 AAVLKKVEPNALRIEEHRRKYDRLRREREERKVERERLRRRAEAQAAYEKA 271
               + +E +         +     +       E            +   +
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 21/147 (14%)

Query: 111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIM----------------- 153
            +EK ++A + K +  E   + +++EAI    EA+                         
Sbjct: 10  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 69

Query: 154 YATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASK 213
               A+ Y K K    AI  A+  L+I+ ++ K     G+A+   G  EEA  +L+ A+ 
Sbjct: 70  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129

Query: 214 ID-FDEEIAAVLKKVEPNALRIEEHRR 239
           ++  + +I    +       +++E R+
Sbjct: 130 LNPNNLDIRNSYELCV---NKLKEARK 153

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 18/155 (11%)

Query: 105 DSSAEVTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIM----------------LN 148
           D   +  D+    + + K            + AI+  T+ +                 L 
Sbjct: 14  DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 73

Query: 149 P-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHD 207
           P +        +  +KM     A+     ALEI+P + K    R      L  +++A+ D
Sbjct: 74  PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 133

Query: 208 LHVASKID-FDEEIAAVLKKVEPNALRIEEHRRKY 241
           L  A +I   D+ I A L KV+      ++  +  
Sbjct: 134 LKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 132 GKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKT 190
             ++     +T+   L    +         Y+ +   ++A      A+  N  +   ++ 
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248

Query: 191 RGMAHAMLG 199
             +  ++LG
Sbjct: 249 ALLELSLLG 257

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.82
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.81
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.81
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.8
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.63
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.56
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.53
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.47
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.37
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.37
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.23
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.2
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.18
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.11
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.1
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.06
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.89
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.82
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.79
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.67
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.66
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.43
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.33
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.32
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.27
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.04
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.82
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.54
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.28
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.75
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.74
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	85.17
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	83.78
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	81.2
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	81.14
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	80.65

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5e-20  Score=150.71  Aligned_cols=111  Identities=28%  Similarity=0.475  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      ++..++.+|+.+++.|+|++||.+|+++|.++| ++.+|.++|.||+++++|.+|+.+|+++|+++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            567899999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHH
Q 044737          196 AMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKV  227 (399)
Q Consensus       196 ~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v  227 (399)
                      ..+|+|++|+.+|+++++++|++. +...+..+
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999984 34444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-18  Score=149.89  Aligned_cols=110  Identities=29%  Similarity=0.451  Sum_probs=106.7

Q ss_pred             cCHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 044737          110 VTDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGY  188 (399)
Q Consensus       110 ~~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~  188 (399)
                      .+++.+++|+.++.+|+.+|+.|+|++|+.+|+++|+++| ++.+|.++|.||+.+|++..|+.+|+++|+++|+++.+|
T Consensus         2 ~~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~   81 (159)
T d1a17a_           2 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   81 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHH
Confidence            3567789999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          189 KTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       189 ~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +++|.++..+|+|++|+.+|+++++++|++.
T Consensus        82 ~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~  112 (159)
T d1a17a_          82 YRRAASNMALGKFRAALRDYETVVKVKPHDK  112 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999999999999999984

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.81  E-value=4.9e-19  Score=151.59  Aligned_cols=109  Identities=26%  Similarity=0.284  Sum_probs=102.5

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------------HHHHHHHHHHHHHcCCHHHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----------------AIMYATRASVYIKMKKPNAAIRD  173 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----------------a~~~~nra~a~~~l~~~~~Ai~d  173 (399)
                      .++..+.+..++..|+.+|+.|+|.+|+..|++||.+.+ .                ..+|+|+|.||+++++|.+|+.+
T Consensus        10 ~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~   89 (153)
T d2fbna1          10 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH   89 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhh
Confidence            456788899999999999999999999999999998765 1                46889999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      |++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus        90 ~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          90 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999999999984

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.2e-19  Score=152.80  Aligned_cols=117  Identities=22%  Similarity=0.261  Sum_probs=106.7

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S---------------AIMYATRASVYIKMKKPNAAIRDA  174 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~---------------a~~~~nra~a~~~l~~~~~Ai~d~  174 (399)
                      +++.++.+..++.+|+.+|+.++|++|+.+|++||.+.| .               ..+|.|+|.||+++++|++|+.+|
T Consensus         6 ~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~   85 (170)
T d1p5qa1           6 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC   85 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchh
Confidence            567788899999999999999999999999999999977 2               478899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHH
Q 044737          175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKV  227 (399)
Q Consensus       175 ~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v  227 (399)
                      ++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++. +...+..+
T Consensus        86 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          86 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             hhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999884 34444444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.80  E-value=1.5e-18  Score=150.55  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=105.8

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP----------------SAIMYATRASVYIKMKKPNAAIRDA  174 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P----------------~a~~~~nra~a~~~l~~~~~Ai~d~  174 (399)
                      +++.++.+..++.+|+.+|+.|+|.+|+.+|++||.+.+                ...+|.|+|.||+++++|.+|+.+|
T Consensus         8 ~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~   87 (168)
T d1kt1a1           8 TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC   87 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhh
Confidence            567788999999999999999999999999999998643                2578899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHH
Q 044737          175 TAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKV  227 (399)
Q Consensus       175 ~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v  227 (399)
                      +++|.++|+++++|+++|.+|..+|+|++|+.+|.+++.++|++. +...+..+
T Consensus        88 ~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          88 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999984 33344433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=5.3e-19  Score=155.42  Aligned_cols=101  Identities=30%  Similarity=0.401  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      |+.+++.|+.+|+.|+|++|+..|++||.++| ++.+|+++|.||+++++|+.|+.+|++||+++|+++.+|+++|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            67899999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      .+|+|++|+.+|++|++++|++
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=5.2e-18  Score=147.00  Aligned_cols=117  Identities=23%  Similarity=0.267  Sum_probs=105.3

Q ss_pred             CHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044737          111 TDEKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML----------------NP-SAIMYATRASVYIKMKKPNAAIRD  173 (399)
Q Consensus       111 ~ee~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l----------------~P-~a~~~~nra~a~~~l~~~~~Ai~d  173 (399)
                      .+.....+..++..|+.++..++|.+|+..|++||.+                +| .+.+|.|||.||+++++|++|+.+
T Consensus        20 ~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~   99 (169)
T d1ihga1          20 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS   99 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhh
Confidence            4556777888999999999999999999999999974                45 678999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHH
Q 044737          174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKV  227 (399)
Q Consensus       174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v  227 (399)
                      |++||+++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++. +...+..+
T Consensus       100 ~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1         100 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999984 33444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-17  Score=136.85  Aligned_cols=110  Identities=17%  Similarity=0.215  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSA-------KG  187 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~-------~a  187 (399)
                      +.|..+++.|+.+|..++|++|+.+|+++|.++| ++.+|.++|.||.++++|.+|+.+|++||+++|.+.       .+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            4688999999999999999999999999999999 999999999999999999999999999999998774       57


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHHH
Q 044737          188 YKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLK  225 (399)
Q Consensus       188 ~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~lk  225 (399)
                      |+++|.++..+++|++|+.+|.+++.++++..+...+.
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~  119 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ  119 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            88888999999999999999999999998875433333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=9.2e-15  Score=132.53  Aligned_cols=105  Identities=19%  Similarity=0.100  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...+..+..+|..++..|+|++|+..|++||.++| ++.+|+++|.||.++|++++|+..|+++++++|+++.+|+++|.
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  113 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHH
Confidence            34688899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|..+|++++|+..|+++++++|++.
T Consensus       114 ~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_         114 ALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhhccccH
Confidence            99999999999999999999999874

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.7e-14  Score=125.25  Aligned_cols=100  Identities=16%  Similarity=0.127  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMA  194 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a  194 (399)
                      .++..+.++|..++..++|+.|+..|++   +.+ ++.+|+|+|.||+.+|+|++|+.+|++||+++|+++.+|+++|.+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            3566888999999999999999999986   456 889999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          195 HAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       195 ~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      |..+|+|++|+.+|++|+...+.+
T Consensus        80 ~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHhhccHHHHHHHHHHHHHhCccC
Confidence            999999999999999999876543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.57  E-value=1.3e-14  Score=116.98  Aligned_cols=92  Identities=13%  Similarity=0.067  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      +...|..+++.|+|.+|+..|+++|.++| ++.+|.++|.+|.+++++.+|+.++++||+++|+++.+|+.+|.+|..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            46789999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 044737          200 HWEEAVHDLHVAS  212 (399)
Q Consensus       200 ~~eeA~~~l~~Al  212 (399)
                      ++++|++.|++.|
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.6e-15  Score=120.65  Aligned_cols=97  Identities=11%  Similarity=-0.034  Sum_probs=89.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMK---KPNAAIRDATAALEINPDS--AKGYKTRGMAHA  196 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~---~~~~Ai~d~~~Al~l~p~~--~~a~~~~g~a~~  196 (399)
                      +.++.++..++|++|.+.|.++|.++| +..+++|+|.|+++.+   ++.+|+..|+++|..+|..  +.+|+++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            567889999999999999999999999 9999999999998755   4567999999999998765  459999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      .+|+|++|+.+|+++++++|++.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCH
Confidence            99999999999999999999985

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.53  E-value=3.6e-14  Score=120.82  Aligned_cols=104  Identities=20%  Similarity=0.155  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------------AIMYATRASVYIKMKKPNAAIRDATAALEIN  181 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------------a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~  181 (399)
                      ...+..++..|+.++..|+|++||..|++||.++| .            +.+|.|+|.||.++|+|+.|+.+|+++|++.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            44556677789999999999999999999999876 2            5789999999999999999999999999875


Q ss_pred             CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          182 PD-----------SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       182 p~-----------~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      |.           +..+|+++|.+|..+|++++|+.+|++|+++.|..
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            42           35689999999999999999999999999997643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.7e-14  Score=132.08  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK-PNAAIRDATAALEINPDSAKGYKTRG  192 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~-~~~Ai~d~~~Al~l~p~~~~a~~~~g  192 (399)
                      .+-++.+...|..+.+.+.+++|+.+|++||+++| +..+|.+||.++..+++ +++|+..++++|+++|++..+|+++|
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            34556777789999999999999999999999999 99999999999999875 89999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          193 MAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       193 ~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      .++..+|++++|+.+|.++++++|++ .++..+..+...+++..+....|+..-+
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999999998 5566677666666666666655554433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.7e-13  Score=118.03  Aligned_cols=100  Identities=19%  Similarity=0.160  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-------------  184 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-------------  184 (399)
                      ..+.++|.+++..|+|++|+.+|++||+++| ++.+|++||.||.++|+|++|+.+|++||...+.+             
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~  116 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK  116 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcc
Confidence            3588999999999999999999999999999 99999999999999999999999999999876543             


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          185 ---AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       185 ---~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                         ..+++++|.++..+++|++|+..|.+|+++.|+.
T Consensus       117 ~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         117 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence               5789999999999999999999999999999875

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=1.5e-13  Score=116.00  Aligned_cols=93  Identities=16%  Similarity=0.097  Sum_probs=84.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          128 AISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKM----------KKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       128 ~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l----------~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +-+.+.|++|+..|++||.++| ++.+|+++|.++..+          +.+++|+..|++||+++|+++.+|+++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            4456679999999999999999 999999999999865          45588999999999999999999999999998


Q ss_pred             hcCC-----------HHHHHHHHHHHHhhCCcHHH
Q 044737          197 MLGH-----------WEEAVHDLHVASKIDFDEEI  220 (399)
Q Consensus       197 ~lg~-----------~eeA~~~l~~Al~ldp~~~~  220 (399)
                      .+|+           |++|+.+|++|++++|++..
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~  121 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  121 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence            8764           79999999999999999853

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.4e-13  Score=126.48  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          116 EAAAEAKAKAMEAISEG-KLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~~g-~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ..+..|..+|.++...+ ++++|+..|.++|.++| +..+|.+||.++..++++++|+.+++++|+++|++..+|+++|.
T Consensus        75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~  154 (315)
T d2h6fa1          75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW  154 (315)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHH
Confidence            34568889999999876 59999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          194 AHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       194 a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                      ++..+++|++|+.+|.++++++|.+ .++..+..+
T Consensus       155 ~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            9999999999999999999999988 444444444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.1e-13  Score=124.76  Aligned_cols=101  Identities=18%  Similarity=0.233  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 044737          119 AEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM  197 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~  197 (399)
                      ..+...|..++..|++++|+..|++++.++| ++.+|.++|.+|..+|++++|+..|+++|+++|+++.+|+.+|.+|..
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3567789999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCcHH
Q 044737          198 LGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       198 lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|++++|+..|++|++++|++.
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHHHHHhCCcCh
Confidence            9999999999999999999873

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.6e-12  Score=118.66  Aligned_cols=117  Identities=21%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAML  198 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~l  198 (399)
                      .+...|..++..|++++|+..|.+++.++| +..+|.++|.+|..++++.+|+..+++++...|.+..+++.++.++..+
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence            344455555566666666666666666666 5555666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHH
Q 044737          199 GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEE  236 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e  236 (399)
                      |++++|+..|+++++++|++ .+...+..+....+++.+
T Consensus       319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            66666666666666666554 223333333333333333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.2e-12  Score=120.88  Aligned_cols=109  Identities=19%  Similarity=0.115  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      +..+...|..++..+++.+|+..|.+++...| ...++..++.+|..+|++++|+..++++|+++|+++.+|+++|.+|.
T Consensus       271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  350 (388)
T d1w3ba_         271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34677889999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcHH-HHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDEE-IAAVLKK  226 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~  226 (399)
                      .+|++++|+..|++|++++|++. ++..+..
T Consensus       351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~  381 (388)
T d1w3ba_         351 QQGKLQEALMHYKEAIRISPTFADAYSNMGN  381 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999983 3344443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.6e-12  Score=118.82  Aligned_cols=98  Identities=15%  Similarity=0.141  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          121 AKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       121 ~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      ...+|..+++.|+|++|+.+|+++|+.+| ++.+|.++|.+|..+++++.|+..|.+|++++|++..+|+.+|.+|..++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            36789999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCcH
Q 044737          200 HWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       200 ~~eeA~~~l~~Al~ldp~~  218 (399)
                      ++++|+..|++++.++|+.
T Consensus       102 ~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTT
T ss_pred             cccccccchhhHHHhccch
Confidence            9999999999999999874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=5.3e-12  Score=113.90  Aligned_cols=113  Identities=13%  Similarity=0.080  Sum_probs=98.3

Q ss_pred             CHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044737          133 KLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHD  207 (399)
Q Consensus       133 ~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~  207 (399)
                      +++.|+..+++++...+     .+.+|+++|.+|..+|+|++|+.+|++||+++|+++.+|+++|.+|..+|++++|+.+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            45678888888887533     6889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          208 LHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       208 l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      |+++++++|++ .++..+..+...+++..++...|++.-
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  132 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY  132 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999997 556667777777777777777766553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.4e-12  Score=98.86  Aligned_cols=81  Identities=10%  Similarity=0.036  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP--------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYK  189 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P--------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~  189 (399)
                      ++.++..|+.+++.|+|.+|+..|++|+++.|        .+.+|.++|.||.++|+|++|+..|++||+++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            56789999999999999999999999999854        2789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 044737          190 TRGMAHAML  198 (399)
Q Consensus       190 ~~g~a~~~l  198 (399)
                      +++.....+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998776554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=6.9e-11  Score=102.95  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------------------HHHHHHHHHHHHHcCCHHHH
Q 044737          114 KREAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S----------------------AIMYATRASVYIKMKKPNAA  170 (399)
Q Consensus       114 ~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~----------------------a~~~~nra~a~~~l~~~~~A  170 (399)
                      +....+.+...|+.++..|++++|+.+|.+|+.+.+ .                      ..++.+++.+++.+|+|++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            356788999999999999999999999999999865 2                      36789999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhCCcHHH
Q 044737          171 IRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVA-------SKIDFDEEI  220 (399)
Q Consensus       171 i~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~A-------l~ldp~~~~  220 (399)
                      +.+|+++|.++|.+..+|.+++.+|..+|++.+|+..|+++       +-++|....
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            99999999999999999999999999999999999999998       446676543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.7e-11  Score=104.19  Aligned_cols=97  Identities=20%  Similarity=0.123  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          149 PSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       149 P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                      |++.-+...|.+|++.|+|++|+..|++||.++|+++.+|+++|.+|..+|+|++|+.+|.+|++++|++ ..+..+..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3567788999999999999999999999999999999999999999999999999999999999999998 567778888


Q ss_pred             hHHHHhHHHHHHHHHHHH
Q 044737          228 EPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       228 ~~~~~k~~e~~~~ye~l~  245 (399)
                      ...++++.++...|+..-
T Consensus        82 ~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            888888888877776543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.21  E-value=1.1e-10  Score=93.33  Aligned_cols=93  Identities=14%  Similarity=0.104  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEP  229 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~  229 (399)
                      ...++++|.++++.|++.+|+..++++|.++|+++.+|+.+|.++..++++++|+.+|+++++++|++ .++..+..+..
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999998 55667777766


Q ss_pred             HHHhHHHHHHHHHH
Q 044737          230 NALRIEEHRRKYDR  243 (399)
Q Consensus       230 ~~~k~~e~~~~ye~  243 (399)
                      ..++..++...+++
T Consensus        96 ~~g~~~~A~~~l~~  109 (112)
T d1hxia_          96 NEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHH
Confidence            66666665555443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5e-10  Score=94.59  Aligned_cols=96  Identities=23%  Similarity=0.189  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEP  229 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~  229 (399)
                      +..+..+|.+|++.++|++|+..|++||+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++ .++..+..+..
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999998 56777778888


Q ss_pred             HHHhHHHHHHHHHHHHH
Q 044737          230 NALRIEEHRRKYDRLRR  246 (399)
Q Consensus       230 ~~~k~~e~~~~ye~l~~  246 (399)
                      .++++.++...|++..+
T Consensus        90 ~~g~~~eA~~~~~~a~~  106 (159)
T d1a17a_          90 ALGKFRAALRDYETVVK  106 (159)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            88888888887776655

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.19  E-value=7.5e-11  Score=100.96  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ...+..+.++|.++++.++|++||..|++||+++| ++.+|+++|.||..+++|+.|+.+|.+|++++|++..++..++.
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34566788899999999999999999999999999 99999999999999999999999999999999999999999988


Q ss_pred             HHHhcCCHHHH
Q 044737          194 AHAMLGHWEEA  204 (399)
Q Consensus       194 a~~~lg~~eeA  204 (399)
                      ++..+..+.++
T Consensus       154 ~~~~l~~~~~~  164 (169)
T d1ihga1         154 VKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88776665554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.18  E-value=1.7e-10  Score=98.76  Aligned_cols=87  Identities=20%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+.++|.++++.++|.+||..|+++|.++| +..+|+++|.||..+++|++|+.+|.+++.++|++..++..++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            355677899999999999999999999999999 9999999999999999999999999999999999999999998887


Q ss_pred             HhcCCHHH
Q 044737          196 AMLGHWEE  203 (399)
Q Consensus       196 ~~lg~~ee  203 (399)
                      ..+..+.+
T Consensus       143 ~~~~~~~e  150 (168)
T d1kt1a1         143 KKAKEHNE  150 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhHHH
Confidence            77665544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.8e-10  Score=92.68  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHH
Q 044737          153 MYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNA  231 (399)
Q Consensus       153 ~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~  231 (399)
                      -+..+|..+++.|+|++|+..|+++|+++|+++.+|+.+|.+|..+|+|++|+.+|.++++++|++ ..+..+..+...+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            356799999999999999999999999999999999999999999999999999999999999998 5566777777777


Q ss_pred             HhHHHHHHHHHHHH
Q 044737          232 LRIEEHRRKYDRLR  245 (399)
Q Consensus       232 ~k~~e~~~~ye~l~  245 (399)
                      +++.++...|++.-
T Consensus        85 ~~~~~A~~~~~~a~   98 (117)
T d1elwa_          85 NRFEEAKRTYEEGL   98 (117)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            77777766665544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.8e-10  Score=95.68  Aligned_cols=88  Identities=15%  Similarity=0.126  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+.+.|.++++.++|++|+..|+++|.++| ++.+|+++|.||+.+|+|+.|+.+|.+|++++|++..++..++.++
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345667899999999999999999999999999 9999999999999999999999999999999999999999988887


Q ss_pred             HhcCCHHHH
Q 044737          196 AMLGHWEEA  204 (399)
Q Consensus       196 ~~lg~~eeA  204 (399)
                      ..+..+...
T Consensus       141 ~~~~~~~~~  149 (170)
T d1p5qa1         141 QRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766655443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.10  E-value=2.1e-10  Score=96.74  Aligned_cols=83  Identities=10%  Similarity=0.025  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAH  195 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~  195 (399)
                      .+..+.++|..+++.++|.+|+..|++||.++| +..+|+++|.||..+|+|+.|+.+|.++++++|++..++..+..+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345677899999999999999999999999999 9999999999999999999999999999999999999988888776


Q ss_pred             HhcC
Q 044737          196 AMLG  199 (399)
Q Consensus       196 ~~lg  199 (399)
                      ..+.
T Consensus       146 ~kl~  149 (153)
T d2fbna1         146 NKLK  149 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.9e-10  Score=94.17  Aligned_cols=68  Identities=13%  Similarity=0.102  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +..+.++|.+|+..++|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|.+|++++|.+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999876

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.6e-10  Score=86.52  Aligned_cols=70  Identities=11%  Similarity=-0.087  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH
Q 044737          150 SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS-------AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~-------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ++.-++++|.++++.|+|..|+.++++|+++.|.+       +.+|.++|.++..+|++++|+..|+++++++|++.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            35667899999999999999999999999986543       78999999999999999999999999999999984

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=3.1e-09  Score=98.30  Aligned_cols=130  Identities=15%  Similarity=0.039  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-------SAIMYATRASVYIKMKKPNAAIRDATAALEINPDS---  184 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-------~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~---  184 (399)
                      ...++.+...|+.+...++|++|+..|.+|+.+..       .+.+|.++|.||.++++|.+|+..+++++++.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            34567888999999999999999999999999842       57899999999999999999999999999986655   


Q ss_pred             ---HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCcHH-------HHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          185 ---AKGYKTRGMAHAM-LGHWEEAVHDLHVASKIDFDEE-------IAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       185 ---~~a~~~~g~a~~~-lg~~eeA~~~l~~Al~ldp~~~-------~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                         ..++.++|.+|.. +++|++|+..|++|+++.+...       +...+..+...++++.++...|+++
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~  184 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence               6788999998864 7999999999999998865321       1222333344444455555555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=5e-09  Score=87.47  Aligned_cols=89  Identities=18%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-----------HHHHHHH
Q 044737          116 EAAAEAKAKAMEAIS----------EGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK-----------PNAAIRD  173 (399)
Q Consensus       116 ~~a~~~k~~g~~~~~----------~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~-----------~~~Ai~d  173 (399)
                      ..+..+...|.+++.          .+.+++||..|++||+++| ++.+|+++|.+|..+++           |..|+..
T Consensus        29 ~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~  108 (145)
T d1zu2a1          29 LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF  108 (145)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhh
Confidence            345677788888874          4556899999999999999 99999999999988754           7999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 044737          174 ATAALEINPDSAKGYKTRGMAHAMLGHWEEA  204 (399)
Q Consensus       174 ~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA  204 (399)
                      |.+||+++|++..++..++.+....+.|.++
T Consensus       109 ~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         109 FQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888887555555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.2e-09  Score=84.09  Aligned_cols=81  Identities=11%  Similarity=0.077  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 044737          118 AAEAKAKAMEAISEG---KLDEAIELSTEAIMLNP-S--AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTR  191 (399)
Q Consensus       118 a~~~k~~g~~~~~~g---~~~~Ai~~y~~Ai~l~P-~--a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~  191 (399)
                      +..+.+.|..+++.+   ++.+||..|++++..+| .  +.+|+++|.||.++|+|++|+..|+++|+++|++..|+..+
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            356778999998755   45679999999999998 3  56999999999999999999999999999999999999888


Q ss_pred             HHHHHhc
Q 044737          192 GMAHAML  198 (399)
Q Consensus       192 g~a~~~l  198 (399)
                      +.+...+
T Consensus       113 ~~I~~~~  119 (122)
T d1nzna_         113 RLIDKAM  119 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.3e-09  Score=104.59  Aligned_cols=110  Identities=7%  Similarity=0.041  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          117 AAAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       117 ~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      .+..+...|..+.+.+++..|+..|.+++.++| ..++.++|.++...++|++|+.+|.+|++++|++..+|+.+|.++.
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             ------------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            345677888889999999999999999888776 3467788999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKV  227 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v  227 (399)
                      ..|++.+|+..|.+|+.++|.. .+...|..+
T Consensus       198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~  229 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999999998876 334444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.77  E-value=7.2e-09  Score=95.45  Aligned_cols=91  Identities=19%  Similarity=0.167  Sum_probs=82.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEE  203 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~ee  203 (399)
                      +..+++.|++++|+..|.++|+.+| ++.++.+++.+|+.+|+|++|+..|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            5678899999999999999999999 999999999999999999999999999999999999999999999988888887


Q ss_pred             HHHHHHHHHhhC
Q 044737          204 AVHDLHVASKID  215 (399)
Q Consensus       204 A~~~l~~Al~ld  215 (399)
                      +...+.+...+.
T Consensus        83 a~~~~~~~~~~~   94 (264)
T d1zbpa1          83 FAQGAATAKVLG   94 (264)
T ss_dssp             HTTSCCCEECCC
T ss_pred             HHHHhhhhhccc
Confidence            776665554443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=2e-08  Score=94.00  Aligned_cols=111  Identities=11%  Similarity=0.025  Sum_probs=94.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhc
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK--PNAAIRDATAALEINPDSAKGY-KTRGMAHAML  198 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~--~~~Ai~d~~~Al~l~p~~~~a~-~~~g~a~~~l  198 (399)
                      ..+..+...+++.+|+.+|+++|+.+| +..+|.+++.++..+++  +.+|+..|.++++++|.+..+| ..+|.++...
T Consensus        78 ~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~  157 (334)
T d1dcea1          78 TEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (334)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhc
Confidence            334445566679999999999999999 99999999999988875  8999999999999999999986 4678999999


Q ss_pred             CCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHh
Q 044737          199 GHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALR  233 (399)
Q Consensus       199 g~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k  233 (399)
                      +.+++|+..++++++++|++ .++..+..+...+++
T Consensus       158 ~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             cccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999998 555566666555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=1.6e-07  Score=87.69  Aligned_cols=90  Identities=19%  Similarity=0.266  Sum_probs=80.6

Q ss_pred             HHcCC-HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044737          129 ISEGK-LDEAIELSTEAIMLNP-SAIMYATRASVYIKMKK----------PNAAIRDATAALEINPDSAKGYKTRGMAHA  196 (399)
Q Consensus       129 ~~~g~-~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~----------~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~  196 (399)
                      ...+. +++|+..|+++|.++| +..+|..|+.++..++.          +.+|+..++++++.+|++..+|+.+|.++.
T Consensus        39 ~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            34444 4899999999999999 99999999888776554          789999999999999999999999999999


Q ss_pred             hcCC--HHHHHHHHHHHHhhCCcH
Q 044737          197 MLGH--WEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       197 ~lg~--~eeA~~~l~~Al~ldp~~  218 (399)
                      .+++  +++|+..+.+++.++|.+
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~  142 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERN  142 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             HhccccHHHHHHHHHHHHhhCchh
Confidence            8875  899999999999999987

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.1e-07  Score=84.72  Aligned_cols=101  Identities=15%  Similarity=0.042  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S-----AIMYATRASVYIKMKKPNAAIRDATAALEINPDS----  184 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~-----a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----  184 (399)
                      ...++....+|..++..|++++|+.+|+++|.+.| +     ..++.++|.+|..+|+|++|+..+.+++++.+..    
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            34566777789999999999999999999999998 4     5688999999999999999999999999975433    


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 044737          185 --AKGYKTRGMAHAMLGHWEEAVHDLHVASKID  215 (399)
Q Consensus       185 --~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ld  215 (399)
                        ..+++.++.++...+++..|...+.+++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              4678899999999999999999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=8e-08  Score=88.51  Aligned_cols=104  Identities=18%  Similarity=0.044  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC---
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-S------AIMYATRASVYIK-MKKPNAAIRDATAALEINPD---  183 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~------a~~~~nra~a~~~-l~~~~~Ai~d~~~Al~l~p~---  183 (399)
                      ...+..+.+.|+.|.+.++|++|+..|.+++.+.+ .      ..++.++|.+|.. +++|+.|+..+.+|+++.+.   
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            34577889999999999999999999999999865 2      7888999998865 69999999999999987432   


Q ss_pred             ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          184 ---SAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       184 ---~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                         ...+|.++|.++..+|+|++|+..|++++.+.+.+
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence               25679999999999999999999999999998875

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.5e-08  Score=96.00  Aligned_cols=117  Identities=8%  Similarity=-0.052  Sum_probs=73.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044737          127 EAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAV  205 (399)
Q Consensus       127 ~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~  205 (399)
                      .....+.|..|+..|.+++.++| +...+.++|.++.+.+++..|+..+.+++.++|  ..+++++|.+++.+++|++|+
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~  172 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAE  172 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHH
Confidence            34455678899999999999999 999999999999999999999999999998876  578999999999999999999


Q ss_pred             HHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          206 HDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       206 ~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      .+|++|++++|++ ..+..|..+....++..++..+|.+.-
T Consensus       173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999998 667788888777777777777776543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2.2e-07  Score=84.59  Aligned_cols=101  Identities=13%  Similarity=-0.068  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNP-----SAIMYATRASVYIKMKKPNAAIRDATAALEI------NPDSAK  186 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-----~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l------~p~~~~  186 (399)
                      +..+...+..+...+++++|+..|.+++.+.+     ....+.++|.+|+.++++++|+..+++++.+      .|..+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  292 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR  292 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence            44567788899999999999999999998866     4677889999999999999999999999854      466678


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcH
Q 044737          187 GYKTRGMAHAMLGHWEEAVHDLHVASKIDFDE  218 (399)
Q Consensus       187 a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~  218 (399)
                      +|..+|.+|..+|++++|+..|++|+++.+..
T Consensus       293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999986543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.43  E-value=5.4e-07  Score=75.22  Aligned_cols=62  Identities=21%  Similarity=0.089  Sum_probs=55.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCc
Q 044737          156 TRASVYIKMKKPNAAIRDATAALEINPDS------------AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFD  217 (399)
Q Consensus       156 nra~a~~~l~~~~~Ai~d~~~Al~l~p~~------------~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~  217 (399)
                      .+|..++..|+|++|+..|++||+++|+.            +.+|.++|.+|..+|+|++|+.+|++++++.+.
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            44888889999999999999999998764            468999999999999999999999999988653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=4.7e-06  Score=66.89  Aligned_cols=75  Identities=11%  Similarity=-0.004  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHHHHHHH
Q 044737          150 SAIMYATRASVYIKMKK---PNAAIRDATAALEINPDS-AKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVL  224 (399)
Q Consensus       150 ~a~~~~nra~a~~~l~~---~~~Ai~d~~~Al~l~p~~-~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~~~~~l  224 (399)
                      .....++.|.|+++...   ...||..++.+++.+|.. ..+||.+|.+|+.+|+|++|...++++|+++|++.....|
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            77888999999998765   468999999999999876 4799999999999999999999999999999999543333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=5.2e-06  Score=76.53  Aligned_cols=93  Identities=11%  Similarity=-0.123  Sum_probs=46.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 044737          123 AKAMEAISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIK-MKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGH  200 (399)
Q Consensus       123 ~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~-l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~  200 (399)
                      ..++...+.++++.|+..|.+++...| +...|...|..... .++++.|...+++++..+|+++..|...+..+...|+
T Consensus       139 ~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~  218 (308)
T d2onda1         139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE  218 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Confidence            334444444555555555555555555 44444444443322 3445555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhhC
Q 044737          201 WEEAVHDLHVASKID  215 (399)
Q Consensus       201 ~eeA~~~l~~Al~ld  215 (399)
                      ++.|...|++|++..
T Consensus       219 ~~~aR~~fe~ai~~~  233 (308)
T d2onda1         219 DNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHHHHHHHHSS
T ss_pred             hHHHHHHHHHHHHhC
Confidence            555555555555543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.32  E-value=2.8e-06  Score=72.93  Aligned_cols=96  Identities=14%  Similarity=0.021  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 044737          151 AIMYATRASVYIKMKKPNAAIRDATAALEINPDS----------------------AKGYKTRGMAHAMLGHWEEAVHDL  208 (399)
Q Consensus       151 a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~----------------------~~a~~~~g~a~~~lg~~eeA~~~l  208 (399)
                      ...+.++|......|++++|+..|.+||.+.+..                      ..++.+++.++..+|+|++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4567889999999999999999999999997643                      368899999999999999999999


Q ss_pred             HHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 044737          209 HVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRLRR  246 (399)
Q Consensus       209 ~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l~~  246 (399)
                      +++++++|.+ ..+..+-.+....++..+..+.|++.+.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999988 5677888888888888888888777644

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=4.9e-06  Score=76.72  Aligned_cols=125  Identities=12%  Similarity=-0.019  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Q 044737          120 EAKAKAMEAISEGKLDEAIELSTEAIMLNP-S-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHA-  196 (399)
Q Consensus       120 ~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P-~-a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~-  196 (399)
                      -+...+......++++.|...|.++|...| + ..+|...+....+.++++.|+..+.++++..|.+...|...+.... 
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~  180 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            456667788899999999999999999999 4 5688999999999999999999999999999999999999887654 


Q ss_pred             hcCCHHHHHHHHHHHHhhCCcH-HHHHHHHHHhHHHHhHHHHHHHHHHH
Q 044737          197 MLGHWEEAVHDLHVASKIDFDE-EIAAVLKKVEPNALRIEEHRRKYDRL  244 (399)
Q Consensus       197 ~lg~~eeA~~~l~~Al~ldp~~-~~~~~lk~v~~~~~k~~e~~~~ye~l  244 (399)
                      ..++.+.|...|+++++..|++ ..+..+.......+++.+.+..|++.
T Consensus       181 ~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            5689999999999999999987 44555555555555666666666654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=6.2e-06  Score=66.19  Aligned_cols=77  Identities=10%  Similarity=-0.040  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          119 AEAKAKAMEAISEGK---LDEAIELSTEAIMLNP-S-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       119 ~~~k~~g~~~~~~g~---~~~Ai~~y~~Ai~l~P-~-a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      +..++-|..+.+..+   ..+||.+++++++.+| . ..+++++|.+|+++|+|+.|+..|+++|+++|++..|...+-.
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            456778888887654   4689999999999999 5 5899999999999999999999999999999999988766554


Q ss_pred             HH
Q 044737          194 AH  195 (399)
Q Consensus       194 a~  195 (399)
                      +.
T Consensus       116 Ie  117 (124)
T d2pqrb1         116 VE  117 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.04  E-value=1.1e-05  Score=73.52  Aligned_cols=69  Identities=16%  Similarity=0.058  Sum_probs=60.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCcHH-HHHHHHHH
Q 044737          159 SVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEE-IAAVLKKV  227 (399)
Q Consensus       159 ~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg~~eeA~~~l~~Al~ldp~~~-~~~~lk~v  227 (399)
                      .-.++.|++++|+..|+++|+.+|+++.++..++.+|+..|+|++|+..|+++++++|++. ....+..+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~l   73 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   73 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999984 33344443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.82  E-value=0.00025  Score=62.73  Aligned_cols=99  Identities=15%  Similarity=0.094  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044737          118 AAEAKAKAMEAISEGKLDEAIELSTEAIMLNPSAIMYATRASVYIK----MKKPNAAIRDATAALEINPDSAKGYKTRGM  193 (399)
Q Consensus       118 a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~  193 (399)
                      ++++...|..++..++|.+|+.+|++|.+.. ++.+++++|.+|..    ..++..|+.++..+....  ++.+++++|.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~   78 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccc
Confidence            4678999999999999999999999997754 67889999999998    678999999999988764  7888999998


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhhCCcHH
Q 044737          194 AHAM----LGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       194 a~~~----lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      ++..    ..+++.|...|+.+....+...
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a  108 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKYAEG  108 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhH
Confidence            8875    5688999999999999887654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.54  E-value=0.0014  Score=52.10  Aligned_cols=84  Identities=15%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHH
Q 044737          132 GKLDEAIELSTEAIMLNPSAIMYATRASVYIK----MKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM----LGHWEE  203 (399)
Q Consensus       132 g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~----lg~~ee  203 (399)
                      .++++|+.+|.++.+.. ++.+++++|..|..    ..++..|+.+|.++.+.  .++.+.+++|.+|..    ..++.+
T Consensus        37 ~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          37 INKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             cCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHH
Confidence            46788888888877644 56677788888776    45678888888888876  467888888888776    467888


Q ss_pred             HHHHHHHHHhhCCcH
Q 044737          204 AVHDLHVASKIDFDE  218 (399)
Q Consensus       204 A~~~l~~Al~ldp~~  218 (399)
                      |+..|++|.++...+
T Consensus       114 A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_         114 AVKTFEKACRLGSED  128 (133)
T ss_dssp             HHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCCCHH
Confidence            888888888876554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.28  E-value=0.0018  Score=56.88  Aligned_cols=98  Identities=13%  Similarity=0.090  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 044737          119 AEAKAKAMEAIS----EGKLDEAIELSTEAIMLNPSAIMYATRASVYIK----MKKPNAAIRDATAALEINPDSAKGYKT  190 (399)
Q Consensus       119 ~~~k~~g~~~~~----~g~~~~Ai~~y~~Ai~l~P~a~~~~nra~a~~~----l~~~~~Ai~d~~~Al~l~p~~~~a~~~  190 (399)
                      ..+...|..++.    ..+...++..+..+.+.. +..+++++|.+|..    ..++..|+.+|.++.+.+  ++.++++
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g-~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~  219 (265)
T d1ouva_         143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFN  219 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             chhhhhhhhhccCCCcccccccchhhhhcccccc-ccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHH
Confidence            345567777775    466777888887776432 78888999999987    678999999999998884  7899999


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhhCCcHH
Q 044737          191 RGMAHAM----LGHWEEAVHDLHVASKIDFDEE  219 (399)
Q Consensus       191 ~g~a~~~----lg~~eeA~~~l~~Al~ldp~~~  219 (399)
                      +|.+|..    ..++++|+.+|++|..+...+.
T Consensus       220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A  252 (265)
T d1ouva_         220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  252 (265)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHH
Confidence            9999885    4489999999999999887653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.75  E-value=0.0082  Score=47.42  Aligned_cols=81  Identities=17%  Similarity=0.112  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 044737          132 GKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAM----LGHWEEAVH  206 (399)
Q Consensus       132 g~~~~Ai~~y~~Ai~l~P-~a~~~~nra~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~----lg~~eeA~~  206 (399)
                      .++++|+.+|.+|.+..- .+  +++++.  ....++++|+..+.++.+.  .++.+++++|.+|..    ..++..|+.
T Consensus         7 kd~~~A~~~~~kaa~~g~~~a--~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMFG--CLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTH--HHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCChhh--hhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            478999999999998865 43  344443  3456899999999999886  589999999999886    568999999


Q ss_pred             HHHHHHhhCCcH
Q 044737          207 DLHVASKIDFDE  218 (399)
Q Consensus       207 ~l~~Al~ldp~~  218 (399)
                      .|+++.+....+
T Consensus        81 ~~~~aa~~g~~~   92 (133)
T d1klxa_          81 YYSKACGLNDQD   92 (133)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHhhhhccCcch
Confidence            999999887554

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.74  E-value=0.77  Score=33.59  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044737          115 REAAAEAKAKAMEAISEGKLDEAIELSTEAIM  146 (399)
Q Consensus       115 ~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~  146 (399)
                      ...|..+..+|..+-+.|+|.+|+.+|.+||.
T Consensus        12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          12 STAAVAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455555555555555555555555554443

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=85.17  E-value=1.3  Score=31.29  Aligned_cols=26  Identities=0%  Similarity=-0.041  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044737          256 ERLRRRAEAQAAYEKAKKEEQSSSSE  281 (399)
Q Consensus       256 er~~~~~~A~~~~~~~~k~~~~d~g~  281 (399)
                      ++++++.+|++.+.+..+|.+++.|.
T Consensus        50 e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          50 ALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            47889999999999999999998664

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=83.78  E-value=1.8  Score=40.27  Aligned_cols=119  Identities=10%  Similarity=-0.052  Sum_probs=50.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 044737          125 AMEAISEGKLDEAIELSTEAIMLNP-SAIMYATR----ASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLG  199 (399)
Q Consensus       125 g~~~~~~g~~~~Ai~~y~~Ai~l~P-~a~~~~nr----a~a~~~l~~~~~Ai~d~~~Al~l~p~~~~a~~~~g~a~~~lg  199 (399)
                      +.......+...|+..+.......+ ....+...    +..++..+....|............+..... ++.......+
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-w~~~~al~~~  299 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMALGTG  299 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHHHHT
T ss_pred             HHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHH-HHHHHHHHcC
Confidence            3334444566666666666555444 22211111    1111222344555555544444333222222 2222333445


Q ss_pred             CHHHHHHHHHHHHhhCCcH--HHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 044737          200 HWEEAVHDLHVASKIDFDE--EIAAVLKKVEPNALRIEEHRRKYDRLR  245 (399)
Q Consensus       200 ~~eeA~~~l~~Al~ldp~~--~~~~~lk~v~~~~~k~~e~~~~ye~l~  245 (399)
                      +|..+...+.... -.+..  ....++.+....+++....+..|..+.
T Consensus       300 ~~~~~~~~~~~l~-~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         300 DRRGLNTWLARLP-MEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             CHHHHHHHHHHSC-TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhcC-cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            6665555544321 11211  223455555555555555555554443

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=81.20  E-value=0.58  Score=35.55  Aligned_cols=44  Identities=14%  Similarity=0.031  Sum_probs=33.4

Q ss_pred             HHHHHHHHHH-------HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcCCC
Q 044737          237 HRRKYDRLRR-------EREERKVERE--------------RLRRRAEAQAAYEKAKKEEQSSSS  280 (399)
Q Consensus       237 ~~~~ye~l~~-------~~e~kk~~~e--------------r~~~~~~A~~~~~~~~k~~~~d~g  280 (399)
                      ...+|+.|+.       ..++|++|++              +++++.+|.++|.++++|..||..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~   71 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            3455666665       2356667765              789999999999999999999853

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.14  E-value=7.6  Score=27.83  Aligned_cols=13  Identities=15%  Similarity=-0.148  Sum_probs=6.8

Q ss_pred             HHHHHHhhCCcHH
Q 044737          207 DLHVASKIDFDEE  219 (399)
Q Consensus       207 ~l~~Al~ldp~~~  219 (399)
                      .|..+++.+++..
T Consensus        44 ~l~~~~~~e~~~~   56 (93)
T d1wfda_          44 MLLQVLKGTKESS   56 (93)
T ss_dssp             HHHHHHHTCCCHH
T ss_pred             HHHHHhhccCCHH
Confidence            3445555566553

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.65  E-value=0.55  Score=33.10  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 044737          113 EKREAAAEAKAKAMEAISEGKLDEAIELSTEAIML  147 (399)
Q Consensus       113 e~~~~a~~~k~~g~~~~~~g~~~~Ai~~y~~Ai~l  147 (399)
                      ..++.|..+..+|..+=+.|+|.+|+.+|.+||.+
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45677888888888888899999998888887765