Citrus Sinensis ID: 044764

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSRS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqqpeheageasrdeisthemnkGISILDLILRTIAAAGTFGSAIAMAttnetltvfpqftqvraeyddhpsfkFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAhkgntsanWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSRS
Flexible Loop (DISEMBL)
mqqpeheageasrdeistHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSRS
Low Complexity Region (SEG)
MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIlllvfdlvmltlvTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSRS
Disordered region (IsUnstruct)
**********************KGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVA****
Disordered Region (DISOPRED)
**************************ILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSR*
Disordered Region (DISEMBL)
**************EISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSRS
Disordered Region (DISPRO)
*******************EMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
C6T1G0	186	CASP-like protein 1 OS=Gl	yes	no	1.0	1.0	0.569	2e-57
Q5NRN4	185	CASP-like protein SDM1_58	N/A	no	0.989	0.994	0.535	9e-55
Q67X40	184	Casparian strip membrane	yes	no	0.978	0.989	0.612	2e-54
A2YAZ1	184	Casparian strip membrane	N/A	no	0.978	0.989	0.612	2e-54
D7KBH3	217	CASP-like protein ARALYDR	N/A	no	0.962	0.824	0.567	2e-54
Q60D27	185	CASP-like protein SDM1_55	N/A	no	0.989	0.994	0.535	2e-54
Q9XI72	209	CASP-like protein At1g141	yes	no	0.962	0.856	0.567	6e-54
B6T959	187	Casparian strip membrane	N/A	no	0.865	0.860	0.638	6e-54
P0DI44	188	Casparian strip membrane	N/A	no	0.983	0.973	0.556	3e-53
A7PMY7	186	Casparian strip membrane	yes	no	0.903	0.903	0.654	4e-53

>sp|C6T1G0|CSPL1_SOYBN CASP-like protein 1 OS=Glycine max PE=2 SV=1

 Score =  221 bits (563), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/186 (56%), Positives = 139/186 (74%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    EAGE S+D      + +G+SI+D ILR IAA  T GSA+AM TTNETL    QF
Sbjct: 1   MKGGSIEAGEVSKDASPRKGVARGLSIMDFILRIIAAVATLGSALAMGTTNETLPFATQF 60

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
            + RAE+DD PS  FFV+AN++VCGYL +S+ +S+FHI+R+   KSRILL+  D VML+L
Sbjct: 61  IKFRAEFDDLPSLVFFVMANAVVCGYLVLSLMISVFHILRSTPVKSRILLVALDTVMLSL 120

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           VTA AS+AT+IVY+AH GNT ANWFA CQ +++FCERISGSLIGS+ A    +++I+ S 
Sbjct: 121 VTASASAATSIVYIAHNGNTGANWFAICQQYNNFCERISGSLIGSYIAVALFIILIMLSL 180

Query: 181 VALSRS 186
           VA+SR+
Sbjct: 181 VAISRN 186

Glycine max (taxid: 3847)

>sp|Q5NRN4|CSPL1_SOLDE CASP-like protein SDM1_58t00016 OS=Solanum demissum GN=SDM1_58t00016 PE=3 SV=1

 Score =  212 bits (540), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 135/185 (72%), Gaps = 1/185 (0%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    EAGE S+ +   H +N+GIS+ DL+LR +A  GT  SA+AM T ++ L+   Q 
Sbjct: 1   MKAVSIEAGEGSKAK-RVHGVNRGISVFDLVLRIVALVGTLASAVAMGTADQALSFSTQI 59

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
               A+YDD  +FKFFV++NSI C YLA+S+P+SIFHIIR+ A KSR+LL+V D +ML  
Sbjct: 60  VNFEAQYDDIDAFKFFVVSNSITCVYLALSIPISIFHIIRSRAGKSRVLLIVLDAIMLVF 119

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           +T+GAS+A AIVYLAH GNTS NWF+ CQ +  FC+R +GSLIGSF A   ++L+I+ S+
Sbjct: 120 LTSGASAAAAIVYLAHNGNTSTNWFSICQQYTDFCQRSAGSLIGSFGAMALMVLLIILSS 179

Query: 181 VALSR 185
           +ALSR
Sbjct: 180 IALSR 184

Solanum demissum (taxid: 50514)

>sp|Q67X40|CASP3_ORYSJ Casparian strip membrane protein Os06g0231050 OS=Oryza sativa subsp. japonica GN=Os06g0231050 PE=2 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 138/183 (75%), Gaps = 1/183 (0%)

Query: 3   QPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQ 62
           +   E GE S+  +S   ++KG+SILD+ILR +A  GT  SAIAM TTN+TL  F QF +
Sbjct: 2   EGSEEHGETSKAPLS-RGVSKGVSILDVILRFVAIIGTLASAIAMGTTNQTLPFFTQFIR 60

Query: 63  VRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVT 122
            +A+Y D P+  FFV+ANSIV  YL +S+PLSI H+IR+ AK SR++L+ FD  ML LVT
Sbjct: 61  FKAQYSDLPTLTFFVVANSIVSAYLILSLPLSIVHVIRSRAKYSRLILIFFDAAMLALVT 120

Query: 123 AGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVA 182
           AGAS+A AIVYLAHKGN  ANW A CQ FDSFCERISGSLIGSFAA V L+L+I  SA+A
Sbjct: 121 AGASAAAAIVYLAHKGNARANWLAICQQFDSFCERISGSLIGSFAAMVVLVLLIFLSAIA 180

Query: 183 LSR 185
           L+R
Sbjct: 181 LAR 183

Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YAZ1|CASP3_ORYSI Casparian strip membrane protein OsI_22263 OS=Oryza sativa subsp. indica GN=OsI_22263 PE=2 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 138/183 (75%), Gaps = 1/183 (0%)

Query: 3   QPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQ 62
           +   E GE S+  +S   ++KG+SILD+ILR +A  GT  SAIAM TTN+TL  F QF +
Sbjct: 2   EGSEEHGETSKAPLS-RGVSKGVSILDVILRFVAIIGTLASAIAMGTTNQTLPFFTQFIR 60

Query: 63  VRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVT 122
            +A+Y D P+  FFV+ANSIV  YL +S+PLSI H+IR+ AK SR++L+ FD  ML LVT
Sbjct: 61  FKAQYSDLPTLTFFVVANSIVSAYLILSLPLSIVHVIRSRAKYSRLILIFFDAAMLALVT 120

Query: 123 AGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVA 182
           AGAS+A AIVYLAHKGN  ANW A CQ FDSFCERISGSLIGSFAA V L+L+I  SA+A
Sbjct: 121 AGASAAAAIVYLAHKGNARANWLAICQQFDSFCERISGSLIGSFAAMVVLVLLIFLSAIA 180

Query: 183 LSR 185
           L+R
Sbjct: 181 LAR 183

Regulates membrane-cell wall junctions and localised cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion.

Oryza sativa subsp. indica (taxid: 39946)

>sp|D7KBH3|CSPL1_ARALL CASP-like protein ARALYDRAFT_888790 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_888790 PE=3 SV=1

 Score =  211 bits (537), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 6/185 (3%)

Query: 7   EAGEASRD--EISTHE----MNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           EAGE SR   ++ T E    +NKGIS+L  +LR  A  GT GSA+AM TT+E++    Q 
Sbjct: 32  EAGETSRSSRKVITFEPKLVINKGISVLGFVLRLFAVFGTIGSALAMGTTHESVVSLSQL 91

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
             ++ +Y D P+  FFV+AN+I  GYL +S+P+SIFHI  T AK SRI+LLV D VML L
Sbjct: 92  VLLKVKYSDLPTLMFFVVANAIAGGYLVLSLPVSIFHIFSTKAKTSRIILLVIDTVMLAL 151

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           V++GAS+ATA VYLAH+GNT+ANW   CQ FD FCERISGSLIGSF A + LML+++ SA
Sbjct: 152 VSSGASAATATVYLAHEGNTTANWPPICQQFDGFCERISGSLIGSFCAVILLMLIVINSA 211

Query: 181 VALSR 185
           ++LSR
Sbjct: 212 ISLSR 216

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|Q60D27|CSPL2_SOLDE CASP-like protein SDM1_55t00014 OS=Solanum demissum GN=SDM1_55t00014 PE=3 SV=1

 Score =  211 bits (537), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 134/185 (72%), Gaps = 1/185 (0%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    EAGE S+ +   H +N+GIS+ DL+LR +A  GT  SA+AM T  + L+   Q 
Sbjct: 1   MKAVSIEAGERSKAK-RVHGVNRGISVFDLVLRIVALVGTLASAVAMGTAGQALSFSTQI 59

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
               A+YDD  +FKFFV++NSI C YLA+S+P+SIFHIIR+ A KSR+LL+V D +ML  
Sbjct: 60  VNFEAQYDDIDAFKFFVVSNSITCVYLALSIPISIFHIIRSRAGKSRVLLIVLDAIMLVF 119

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           +T+GAS+A AIVYLAH GNTS NWF+ CQ +  FC+R +GSLIGSF A   ++L+I+ S+
Sbjct: 120 LTSGASAAAAIVYLAHNGNTSTNWFSICQQYTDFCQRSAGSLIGSFGAMALMVLLIILSS 179

Query: 181 VALSR 185
           +ALSR
Sbjct: 180 IALSR 184

Solanum demissum (taxid: 50514)

>sp|Q9XI72|CSPL2_ARATH CASP-like protein At1g14160 OS=Arabidopsis thaliana GN=At1g14160 PE=2 SV=1

 Score =  209 bits (533), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 6/185 (3%)

Query: 7   EAGEASRD--EISTHE----MNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           EAGE SR   ++ T E    +NKGIS+L  +LR  A  GT GSA+AM TT+E++    Q 
Sbjct: 24  EAGETSRSSRKLITFEPKLVINKGISVLGFVLRLFAVFGTIGSALAMGTTHESVVSLSQL 83

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
             ++ +Y D P+  FFV+AN+I  GYL +S+P+SIFHI  T AK SRI+LLV D VML L
Sbjct: 84  VLLKVKYSDLPTLMFFVVANAISGGYLVLSLPVSIFHIFSTQAKTSRIILLVVDTVMLAL 143

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           V++GAS+ATA VYLAH+GNT+ANW   CQ FD FCERISGSLIGSF A + LML+++ SA
Sbjct: 144 VSSGASAATATVYLAHEGNTTANWPPICQQFDGFCERISGSLIGSFCAVILLMLIVINSA 203

Query: 181 VALSR 185
           ++LSR
Sbjct: 204 ISLSR 208

Arabidopsis thaliana (taxid: 3702)

>sp|B6T959|CASP1_MAIZE Casparian strip membrane protein 1 OS=Zea mays PE=2 SV=1

 Score =  209 bits (533), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 121/163 (74%), Gaps = 2/163 (1%)

Query: 7   EAGEASRDEI--STHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVR 64
           E GE S+     S+  ++KG+S+LDLILR IA  GT  SAIAM TTNETL  F QF + +
Sbjct: 6   EHGETSKQAPLGSSRGVSKGVSVLDLILRFIAIIGTLASAIAMGTTNETLPFFTQFIRFK 65

Query: 65  AEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAG 124
           A+Y D P+  FFV+ANSIVC YL +S+PLSI HIIR+ AK SR+LL+V D  ML LVT G
Sbjct: 66  AQYSDLPTLTFFVVANSIVCAYLTLSLPLSIVHIIRSRAKYSRLLLVVLDAAMLALVTPG 125

Query: 125 ASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFA 167
           AS+A AIVYLAHKGN  ANW A CQ FDSFCERISG LIGSF 
Sbjct: 126 ASAAAAIVYLAHKGNVRANWLAICQQFDSFCERISGCLIGSFG 168

Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion.

Zea mays (taxid: 4577)

>sp|P0DI44|CASP_SOLTU Casparian strip membrane protein 1 OS=Solanum tuberosum PE=2 SV=1

 Score =  207 bits (527), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 133/185 (71%), Gaps = 2/185 (1%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    E G AS+   S   +N+G+SILDL +R IA   T GSAIAM TTNETL  F QF
Sbjct: 1   MKAGALELGHASKTTKS--GVNRGMSILDLFIRIIAIIATLGSAIAMGTTNETLPFFTQF 58

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
            + +A+Y D P+F FFV+AN+IV  YL +S+ LSI+HI+R+ A+ +RI L+ FD  ML L
Sbjct: 59  VRFKAKYSDLPTFTFFVVANAIVSAYLVLSLGLSIYHIMRSRAQATRIALIFFDAAMLGL 118

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           +T GAS++ AIVYLAHKGN   NWF  CQ +DSFC R SGSL+GSFA +V ++L+I  SA
Sbjct: 119 LTGGASASAAIVYLAHKGNRKTNWFPICQQYDSFCHRTSGSLVGSFAGSVLIILLIFLSA 178

Query: 181 VALSR 185
           +ALSR
Sbjct: 179 IALSR 183

Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion.

Solanum tuberosum (taxid: 4113)

>sp|A7PMY7|CASP3_VITVI Casparian strip membrane protein VIT_14s0108g01050 OS=Vitis vinifera GN=VIT_14s0108g01050 PE=3 SV=1

 Score =  207 bits (527), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/168 (65%), Positives = 126/168 (75%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    E GE S+  I    +N+GISILD ILR I   GT GSAIAM TTNETL  F QF
Sbjct: 1   MKAGALELGEGSKTSIPRGGVNRGISILDFILRLITIIGTLGSAIAMGTTNETLPFFTQF 60

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
           TQ RAEYDD P+F FFVIANSIV GYL +S+P+SI HI+R+ A+ SRI+L+ FD  ML L
Sbjct: 61  TQFRAEYDDLPTFTFFVIANSIVSGYLVLSLPMSILHIVRSGARASRIVLIFFDTAMLAL 120

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAA 168
           +TA AS+A+AIVYLAHKGN  ANWFA CQ F SFCERISGSLIGSF  
Sbjct: 121 LTAAASAASAIVYLAHKGNAQANWFAICQQFKSFCERISGSLIGSFGG 168

Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion.

Vitis vinifera (taxid: 29760)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
351727415	186	CASP-like protein 1 [Glycine max] gi|288	1.0	1.0	0.569	1e-55
75107669	185	RecName: Full=CASP-like protein SDM1_58t	0.989	0.994	0.535	4e-53
297724625	184	Os06g0231050 [Oryza sativa Japonica Grou	0.978	0.989	0.612	8e-53
297849820	217	integral membrane family protein [Arabid	0.962	0.824	0.567	1e-52
75113631	185	RecName: Full=CASP-like protein SDM1_55t	0.989	0.994	0.535	1e-52
15223101	209	UPF0497 membrane protein [Arabidopsis th	0.962	0.856	0.567	3e-52
226528346	187	casparian strip membrane protein 1 [Zea	0.865	0.860	0.638	3e-52
391738036	188	RecName: Full=Casparian strip membrane p	0.983	0.973	0.556	1e-51
225452867	186	PREDICTED: casparian strip membrane prot	0.903	0.903	0.654	2e-51
391358738	192	RecName: Full=CASP-like protein 1	0.956	0.927	0.547	6e-51

>gi|351727415|ref|NP_001236648.1| CASP-like protein 1 [Glycine max] gi|288559151|sp|C6T1G0.1|CSPL1_SOYBN RecName: Full=CASP-like protein 1 gi|255630091|gb|ACU15399.1| unknown [Glycine max]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/186 (56%), Positives = 139/186 (74%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    EAGE S+D      + +G+SI+D ILR IAA  T GSA+AM TTNETL    QF
Sbjct: 1   MKGGSIEAGEVSKDASPRKGVARGLSIMDFILRIIAAVATLGSALAMGTTNETLPFATQF 60

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
            + RAE+DD PS  FFV+AN++VCGYL +S+ +S+FHI+R+   KSRILL+  D VML+L
Sbjct: 61  IKFRAEFDDLPSLVFFVMANAVVCGYLVLSLMISVFHILRSTPVKSRILLVALDTVMLSL 120

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           VTA AS+AT+IVY+AH GNT ANWFA CQ +++FCERISGSLIGS+ A    +++I+ S 
Sbjct: 121 VTASASAATSIVYIAHNGNTGANWFAICQQYNNFCERISGSLIGSYIAVALFIILIMLSL 180

Query: 181 VALSRS 186
           VA+SR+
Sbjct: 181 VAISRN 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75107669|sp|Q5NRN4.1|CSPL1_SOLDE RecName: Full=CASP-like protein SDM1_58t00016 gi|56744292|gb|AAW28571.1| plant integral membrane protein TIGR01569 containing protein [Solanum demissum]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 135/185 (72%), Gaps = 1/185 (0%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    EAGE S+ +   H +N+GIS+ DL+LR +A  GT  SA+AM T ++ L+   Q 
Sbjct: 1   MKAVSIEAGEGSKAK-RVHGVNRGISVFDLVLRIVALVGTLASAVAMGTADQALSFSTQI 59

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
               A+YDD  +FKFFV++NSI C YLA+S+P+SIFHIIR+ A KSR+LL+V D +ML  
Sbjct: 60  VNFEAQYDDIDAFKFFVVSNSITCVYLALSIPISIFHIIRSRAGKSRVLLIVLDAIMLVF 119

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           +T+GAS+A AIVYLAH GNTS NWF+ CQ +  FC+R +GSLIGSF A   ++L+I+ S+
Sbjct: 120 LTSGASAAAAIVYLAHNGNTSTNWFSICQQYTDFCQRSAGSLIGSFGAMALMVLLIILSS 179

Query: 181 VALSR 185
           +ALSR
Sbjct: 180 IALSR 184

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297724625|ref|NP_001174676.1| Os06g0231050 [Oryza sativa Japonica Group] gi|75116473|sp|Q67X40.1|CASP3_ORYSJ RecName: Full=Casparian strip membrane protein Os06g0231050 gi|342162483|sp|A2YAZ1.1|CASP3_ORYSI RecName: Full=Casparian strip membrane protein OsI_22263 gi|51535409|dbj|BAD37279.1| integral membrane family protein-like [Oryza sativa Japonica Group] gi|125554646|gb|EAZ00252.1| hypothetical protein OsI_22263 [Oryza sativa Indica Group] gi|125596586|gb|EAZ36366.1| hypothetical protein OsJ_20694 [Oryza sativa Japonica Group] gi|255676859|dbj|BAH93404.1| Os06g0231050 [Oryza sativa Japonica Group]

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 138/183 (75%), Gaps = 1/183 (0%)

Query: 3   QPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQ 62
           +   E GE S+  +S   ++KG+SILD+ILR +A  GT  SAIAM TTN+TL  F QF +
Sbjct: 2   EGSEEHGETSKAPLS-RGVSKGVSILDVILRFVAIIGTLASAIAMGTTNQTLPFFTQFIR 60

Query: 63  VRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVT 122
            +A+Y D P+  FFV+ANSIV  YL +S+PLSI H+IR+ AK SR++L+ FD  ML LVT
Sbjct: 61  FKAQYSDLPTLTFFVVANSIVSAYLILSLPLSIVHVIRSRAKYSRLILIFFDAAMLALVT 120

Query: 123 AGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVA 182
           AGAS+A AIVYLAHKGN  ANW A CQ FDSFCERISGSLIGSFAA V L+L+I  SA+A
Sbjct: 121 AGASAAAAIVYLAHKGNARANWLAICQQFDSFCERISGSLIGSFAAMVVLVLLIFLSAIA 180

Query: 183 LSR 185
           L+R
Sbjct: 181 LAR 183

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849820|ref|XP_002892791.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|341958523|sp|D7KBH3.1|CSPL1_ARALL RecName: Full=CASP-like protein ARALYDRAFT_888790 gi|297338633|gb|EFH69050.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 6/185 (3%)

Query: 7   EAGEASRD--EISTHE----MNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           EAGE SR   ++ T E    +NKGIS+L  +LR  A  GT GSA+AM TT+E++    Q 
Sbjct: 32  EAGETSRSSRKVITFEPKLVINKGISVLGFVLRLFAVFGTIGSALAMGTTHESVVSLSQL 91

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
             ++ +Y D P+  FFV+AN+I  GYL +S+P+SIFHI  T AK SRI+LLV D VML L
Sbjct: 92  VLLKVKYSDLPTLMFFVVANAIAGGYLVLSLPVSIFHIFSTKAKTSRIILLVIDTVMLAL 151

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           V++GAS+ATA VYLAH+GNT+ANW   CQ FD FCERISGSLIGSF A + LML+++ SA
Sbjct: 152 VSSGASAATATVYLAHEGNTTANWPPICQQFDGFCERISGSLIGSFCAVILLMLIVINSA 211

Query: 181 VALSR 185
           ++LSR
Sbjct: 212 ISLSR 216

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75113631|sp|Q60D27.1|CSPL2_SOLDE RecName: Full=CASP-like protein SDM1_55t00014 gi|53749457|gb|AAU90311.1| plant integral membrane protein TIGR01569 containing protein [Solanum demissum]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 134/185 (72%), Gaps = 1/185 (0%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    EAGE S+ +   H +N+GIS+ DL+LR +A  GT  SA+AM T  + L+   Q 
Sbjct: 1   MKAVSIEAGERSKAK-RVHGVNRGISVFDLVLRIVALVGTLASAVAMGTAGQALSFSTQI 59

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
               A+YDD  +FKFFV++NSI C YLA+S+P+SIFHIIR+ A KSR+LL+V D +ML  
Sbjct: 60  VNFEAQYDDIDAFKFFVVSNSITCVYLALSIPISIFHIIRSRAGKSRVLLIVLDAIMLVF 119

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           +T+GAS+A AIVYLAH GNTS NWF+ CQ +  FC+R +GSLIGSF A   ++L+I+ S+
Sbjct: 120 LTSGASAAAAIVYLAHNGNTSTNWFSICQQYTDFCQRSAGSLIGSFGAMALMVLLIILSS 179

Query: 181 VALSR 185
           +ALSR
Sbjct: 180 IALSR 184

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223101|ref|NP_172868.1| UPF0497 membrane protein [Arabidopsis thaliana] gi|75215660|sp|Q9XI72.1|CSPL2_ARATH RecName: Full=CASP-like protein At1g14160 gi|5080791|gb|AAD39301.1|AC007576_24 Hypothetical protein [Arabidopsis thaliana] gi|26449701|dbj|BAC41974.1| unknown protein [Arabidopsis thaliana] gi|30017253|gb|AAP12860.1| At1g14160 [Arabidopsis thaliana] gi|332190992|gb|AEE29113.1| UPF0497 membrane protein [Arabidopsis thaliana]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 6/185 (3%)

Query: 7   EAGEASRD--EISTHE----MNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           EAGE SR   ++ T E    +NKGIS+L  +LR  A  GT GSA+AM TT+E++    Q 
Sbjct: 24  EAGETSRSSRKLITFEPKLVINKGISVLGFVLRLFAVFGTIGSALAMGTTHESVVSLSQL 83

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
             ++ +Y D P+  FFV+AN+I  GYL +S+P+SIFHI  T AK SRI+LLV D VML L
Sbjct: 84  VLLKVKYSDLPTLMFFVVANAISGGYLVLSLPVSIFHIFSTQAKTSRIILLVVDTVMLAL 143

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           V++GAS+ATA VYLAH+GNT+ANW   CQ FD FCERISGSLIGSF A + LML+++ SA
Sbjct: 144 VSSGASAATATVYLAHEGNTTANWPPICQQFDGFCERISGSLIGSFCAVILLMLIVINSA 203

Query: 181 VALSR 185
           ++LSR
Sbjct: 204 ISLSR 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528346|ref|NP_001148957.1| casparian strip membrane protein 1 [Zea mays] gi|226713613|sp|B6T959.1|CASP1_MAIZE RecName: Full=Casparian strip membrane protein 1 gi|195623624|gb|ACG33642.1| plant integral membrane protein TIGR01569 containing protein [Zea mays]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 121/163 (74%), Gaps = 2/163 (1%)

Query: 7   EAGEASRDEI--STHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVR 64
           E GE S+     S+  ++KG+S+LDLILR IA  GT  SAIAM TTNETL  F QF + +
Sbjct: 6   EHGETSKQAPLGSSRGVSKGVSVLDLILRFIAIIGTLASAIAMGTTNETLPFFTQFIRFK 65

Query: 65  AEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAG 124
           A+Y D P+  FFV+ANSIVC YL +S+PLSI HIIR+ AK SR+LL+V D  ML LVT G
Sbjct: 66  AQYSDLPTLTFFVVANSIVCAYLTLSLPLSIVHIIRSRAKYSRLLLVVLDAAMLALVTPG 125

Query: 125 ASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFA 167
           AS+A AIVYLAHKGN  ANW A CQ FDSFCERISG LIGSF 
Sbjct: 126 ASAAAAIVYLAHKGNVRANWLAICQQFDSFCERISGCLIGSFG 168

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391738036|sp|P0DI44.1|CASP_SOLTU RecName: Full=Casparian strip membrane protein 1

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 133/185 (71%), Gaps = 2/185 (1%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    E G AS+   S   +N+G+SILDL +R IA   T GSAIAM TTNETL  F QF
Sbjct: 1   MKAGALELGHASKTTKS--GVNRGMSILDLFIRIIAIIATLGSAIAMGTTNETLPFFTQF 58

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
            + +A+Y D P+F FFV+AN+IV  YL +S+ LSI+HI+R+ A+ +RI L+ FD  ML L
Sbjct: 59  VRFKAKYSDLPTFTFFVVANAIVSAYLVLSLGLSIYHIMRSRAQATRIALIFFDAAMLGL 118

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
           +T GAS++ AIVYLAHKGN   NWF  CQ +DSFC R SGSL+GSFA +V ++L+I  SA
Sbjct: 119 LTGGASASAAIVYLAHKGNRKTNWFPICQQYDSFCHRTSGSLVGSFAGSVLIILLIFLSA 178

Query: 181 VALSR 185
           +ALSR
Sbjct: 179 IALSR 183

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452867|ref|XP_002278569.1| PREDICTED: casparian strip membrane protein VIT_14s0108g01050 [Vitis vinifera] gi|226713606|sp|A7PMY7.1|CASP3_VITVI RecName: Full=Casparian strip membrane protein VIT_14s0108g01050 gi|296082941|emb|CBI22242.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/168 (65%), Positives = 126/168 (75%)

Query: 1   MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
           M+    E GE S+  I    +N+GISILD ILR I   GT GSAIAM TTNETL  F QF
Sbjct: 1   MKAGALELGEGSKTSIPRGGVNRGISILDFILRLITIIGTLGSAIAMGTTNETLPFFTQF 60

Query: 61  TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTL 120
           TQ RAEYDD P+F FFVIANSIV GYL +S+P+SI HI+R+ A+ SRI+L+ FD  ML L
Sbjct: 61  TQFRAEYDDLPTFTFFVIANSIVSGYLVLSLPMSILHIVRSGARASRIVLIFFDTAMLAL 120

Query: 121 VTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAA 168
           +TA AS+A+AIVYLAHKGN  ANWFA CQ F SFCERISGSLIGSF  
Sbjct: 121 LTAAASAASAIVYLAHKGNAQANWFAICQQFKSFCERISGSLIGSFGG 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391358738|sp|P0DI35.1|CSPL_LACSI RecName: Full=CASP-like protein 1

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 7   EAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAE 66
           E G+AS+  +     NKG+S++DL+LR +  AGT G+AIAM T  +TL  F +F    AE
Sbjct: 8   EEGDASKVLVPVGS-NKGVSVMDLVLRLVGIAGTLGAAIAMGTNEQTLPFFTRFVVFNAE 66

Query: 67  YDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGAS 126
           YDD  SF+ FVI N+IVC Y  +++PLSI HI+R+AA+ SRILL++ D VML L+TAGAS
Sbjct: 67  YDDFRSFRLFVIVNAIVCAYFVLTLPLSIVHIMRSAARGSRILLIIMDTVMLALLTAGAS 126

Query: 127 SATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSR 185
           +A +IVYLAH GNTS NW   CQ +  FC+  SGSLIGSF A V  +L+I+  A+ALSR
Sbjct: 127 AAASIVYLAHNGNTSTNWLPVCQQYGDFCQGASGSLIGSFGAVVVFILIILLGAIALSR 185

Source: Lactuca saligna

Species: Lactuca saligna

Genus: Lactuca

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2035791	209	AT1G14160 "AT1G14160" [Arabido	0.962	0.856	0.518	1.9e-44
TAIR|locus:2150986	187	CASP5 "Casparian strip membran	0.994	0.989	0.502	1.9e-42
TAIR|locus:2160747	202	CASP4 "AT5G06200" [Arabidopsis	0.935	0.861	0.419	6.5e-35
TAIR|locus:2038638	221	CASP3 "AT2G27370" [Arabidopsis	0.935	0.787	0.431	3.2e-33
TAIR|locus:2080742	204	CASP2 "AT3G11550" [Arabidopsis	0.881	0.803	0.426	5.2e-33
TAIR|locus:2053514	206	CASP1 "AT2G36100" [Arabidopsis	0.876	0.791	0.404	3.8e-30
TAIR|locus:2130479	193	AT4G15610 "AT4G15610" [Arabido	0.892	0.860	0.264	6e-16
TAIR|locus:2081091	199	AT3G06390 "AT3G06390" [Arabido	0.833	0.778	0.275	7.9e-14
TAIR|locus:2163386	197	AT5G44550 [Arabidopsis thalian	0.854	0.807	0.3	1.2e-12
UNIPROTKB|A2Y2B7	162	BLE3 "CASP-like protein BLE3"	0.790	0.907	0.302	2.4e-12

TAIR|locus:2035791 AT1G14160 "AT1G14160" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 96/185 (51%), Positives = 125/185 (67%)

Query:     7 EAGEASRD--EISTHE----MNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
             EAGE SR   ++ T E    +NKGIS+L  +LR  A  GT GSA+AM TT+E++    Q 
Sbjct:    24 EAGETSRSSRKLITFEPKLVINKGISVLGFVLRLFAVFGTIGSALAMGTTHESVVSLSQL 83

Query:    61 TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXX 120
               ++ +Y D P+  FFV+AN+I  GYL +S+P+SIFHI  T AK SRI            
Sbjct:    84 VLLKVKYSDLPTLMFFVVANAISGGYLVLSLPVSIFHIFSTQAKTSRIILLVVDTVMLAL 143

Query:   121 XTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
              ++GAS+ATA VYLAH+GNT+ANW   CQ FD FCERISGSLIGSF A + LML+++ SA
Sbjct:   144 VSSGASAATATVYLAHEGNTTANWPPICQQFDGFCERISGSLIGSFCAVILLMLIVINSA 203

Query:   181 VALSR 185
             ++LSR
Sbjct:   204 ISLSR 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2150986 CASP5 "Casparian strip membrane domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 93/185 (50%), Positives = 123/185 (66%)

Query:     1 MQQPEHEAGEASRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQF 60
             M+  + E  E S+    +  M++ I+IL+ ILR +A   T GSAI M TT+ETL  F QF
Sbjct:     1 MKSGQAEIMETSKGIQKSGLMSRRIAILEFILRIVAFFNTIGSAILMGTTHETLPFFTQF 60

Query:    61 TQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXX 120
              + +AEY+D P+  FFV+AN++V GYL +S+ L+  HI++   + +RI            
Sbjct:    61 IRFQAEYNDLPALTFFVVANAVVSGYLILSLTLAFVHIVKRKTQNTRILLIILDVAMLGL 120

Query:   121 XTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSA 180
              T+GASSA AIVYLAH GN   NWFA CQ F+SFCERISGSLIGSF A V L+L+I+ SA
Sbjct:   121 LTSGASSAAAIVYLAHNGNNKTNWFAICQQFNSFCERISGSLIGSFIAIVLLILLILLSA 180

Query:   181 VALSR 185
             +ALSR
Sbjct:   181 IALSR 185

GO:0005739 "mitochondrion" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

TAIR|locus:2160747 CASP4 "AT5G06200" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 73/174 (41%), Positives = 103/174 (59%)

Query:    12 SRDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHP 71
             +RD   +    +G+SI D +LR  A      +A  M T++ETL  F QF Q  A YDD P
Sbjct:    28 ARDHTGSGGYKRGLSIFDFLLRLAAIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLP 87

Query:    72 SFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXXXTAGASSATAI 131
             +F+FFV+A +IV GYL +S+P S+  I+R  A   R+             TA AS+A AI
Sbjct:    88 TFQFFVVAIAIVAGYLVLSLPFSVVTIVRPLAVAPRLLLLVLDTAALALDTAAASAAAAI 147

Query:   132 VYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSR 185
             VYLAH GNT+ NW   CQ F  FC++ SG+++ +FA+   L +++V S V+L R
Sbjct:   148 VYLAHNGNTNTNWLPICQQFGDFCQKTSGAVVSAFASVTFLAILVVISGVSLKR 201

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2038638 CASP3 "AT2G27370" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 75/174 (43%), Positives = 103/174 (59%)

Query:    13 RDEISTHEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPS 72
             ++++S     +G++I D +LR IAA     +A  MATT ETL  F QF Q +A+Y D P+
Sbjct:    47 QEKMSPAGWKRGVAIFDFVLRLIAAITAMAAAAKMATTEETLPFFTQFLQFQADYTDLPT 106

Query:    73 FKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXXXTAGASSATAIV 132
                FVI NSIV GYL +S+P SI  I+R  A   R+                AS++ AIV
Sbjct:   107 MSSFVIVNSIVGGYLTLSLPFSIVCILRPLAVPPRLFLILCDTVMMGLTLMAASASAAIV 166

Query:   133 YLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSRS 186
             YLAH GN+S+NW   CQ F  FC+  SG+++ SF AA  LM +++ SA AL R+
Sbjct:   167 YLAHNGNSSSNWLPVCQQFGDFCQGTSGAVVASFIAATLLMFLVILSAFALKRT 220

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0048226 "Casparian strip" evidence=IDA

TAIR|locus:2080742 CASP2 "AT3G11550" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 70/164 (42%), Positives = 98/164 (59%)

Query:    22 NKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANS 81
             N+G++I D +LR  A      +A  M T++ETL  F QF Q  A YDD P+F+FFVIA +
Sbjct:    40 NRGLAIFDFLLRLAAIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVIAMA 99

Query:    82 IVCGYLAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXXXTAGASSATAIVYLAHKGNTS 141
             +V GYL +S+P+S+  I+R  A   R+             TA ASSA AI YLAH GN +
Sbjct:   100 LVGGYLVLSLPISVVTILRPLATAPRLLLLVLDTGVLALNTAAASSAAAISYLAHSGNQN 159

Query:   142 ANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSR 185
              NW   CQ F  FC++ SG+++ +F + V   +++V S VAL R
Sbjct:   160 TNWLPICQQFGDFCQKSSGAVVSAFVSVVFFTILVVISGVALKR 203

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2053514 CASP1 "AT2G36100" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 66/163 (40%), Positives = 96/163 (58%)

Query:    23 KGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSI 82
             +G++I D +LR  A A T G+A  M T  ETL  F QF Q +A YDD P+F++FVIA ++
Sbjct:    43 RGLAIFDFLLRLAAIAVTIGAASVMYTAEETLPFFTQFLQFQAGYDDLPAFQYFVIAVAV 102

Query:    83 VCGYLAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXXXTAGASSATAIVYLAHKGNTSA 142
             V  YL +S+P SI  I+R  A   R+             T+ A++A +I YLAH GN S 
Sbjct:   103 VASYLVLSLPFSIVSIVRPHAVAPRLILLICDTLVVTLNTSAAAAAASITYLAHNGNQST 162

Query:   143 NWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSR 185
             NW   CQ F  FC+ +S +++    A +  +++I+ SA+AL R
Sbjct:   163 NWLPICQQFGDFCQNVSTAVVADSIAILFFIVLIIISAIALKR 205

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0048226 "Casparian strip" evidence=IDA

TAIR|locus:2130479 AT4G15610 "AT4G15610" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 45/170 (26%), Positives = 80/170 (47%)

Query:    18 THEMNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVR---AEYDDHPSFK 74
             T    K  S+  ++LR +  A T  S + M T+ +T  +F   T +R   AE+ + P+  
Sbjct:    19 TGTTTKSCSMTQVVLRFVLFAATLTSIVVMVTSKQTKNIFLPGTPIRIPAAEFTNSPALI 78

Query:    75 FFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXXXTAGASSATA-IVY 133
             +FV+A S+ C Y  +S  +++    + +     +              A A+ A   + Y
Sbjct:    79 YFVVALSVACFYSIVSTFVTVSAFKKHSCSAVLLLNLAIMDAVMVGIVASATGAGGGVAY 138

Query:   134 LAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVAL 183
             L  KGN    W   C ++D FC  + G++  S  A+V L+L+ + S ++L
Sbjct:   139 LGLKGNKEVRWGKICHIYDKFCRHVGGAIAVSLFASVVLLLLSIISVLSL 188

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2081091 AT3G06390 "AT3G06390" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 44/160 (27%), Positives = 80/160 (50%)

Query:    28 LDLILRTIAAAGTFGSAIAMATTNET-LTVFPQFTQ---VRAEYDDHPSFKFFVIANSIV 83
             +D+I R +  + T  + I M T+++T +T  P  +    V AE++D P+F +FV+A  + 
Sbjct:    37 IDIITRVLLFSATLTALIVMVTSDQTEMTQLPGVSSPAPVSAEFNDSPAFIYFVVALVVA 96

Query:    84 CGYLAISVPLSIFHIIRTA-AKKSRIXXXXXXXXXXXXXTAGASSATAIVYLAHKGNTSA 142
               Y  IS  +SI  +++     +  I              +   +A  + Y+A KGN   
Sbjct:    97 SFYALISTLVSISLLLKPEFTAQFSIYLASLDMVMLGILASATGTAGGVAYIALKGNEEV 156

Query:   143 NWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVA 182
              W   C ++D FC  I+ SL  S  A++ L+++ + SA++
Sbjct:   157 GWNKICNVYDKFCRYIATSLALSLFASLLLLVLSIWSALS 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2163386 AT5G44550 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 51/170 (30%), Positives = 79/170 (46%)

Query:    23 KGISILDLILRTIAAAGTFGSAIAMATTNETLTVF-------PQFTQVRAEYDDHPSFKF 75
             K   IL L LR +A + T  +AI M    ET T         P      A++D  P+F F
Sbjct:    14 KSCKIL-LGLRLLAFSATLSAAIVMGLNKETKTFIVGKVGNTPIQATFTAKFDHTPAFVF 72

Query:    76 FVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXXXTAGASSATAIVYLA 135
             FV+AN++V  +  + + L IF           +             +A A++A  +  + 
Sbjct:    73 FVVANAMVSFHNLLMIALQIFGGKMEFTGFRLLSVAILDMLNVTLISAAANAAAFMAEVG 132

Query:   136 HKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVALSR 185
               GN  A W   C  F ++C+  +G+LI +FA  + LML+I  SA ++SR
Sbjct:   133 KNGNKHARWDKICDRFATYCDHGAGALIAAFAGVI-LMLII--SAASISR 179

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A2Y2B7 BLE3 "CASP-like protein BLE3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 49/162 (30%), Positives = 76/162 (46%)

Query:    21 MNKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIAN 80
             M K   +++ +LR  AAA    +A+ M T+ ET + F    Q+ A+Y   PSF FFV+A 
Sbjct:     1 MAKVHRLMNAVLRLAAAAAAATAAVVMVTSRETTSFFG--IQMEAKYSYTPSFIFFVVAY 58

Query:    81 SIVCGY--LAISVPLSIFHIIRTAAKKSRIXXXXXXXXXXXXXTAGA-SSATAIVYLAHK 137
             ++   Y  L ++VP          +  SR+              AGA +SA AI  +A  
Sbjct:    59 AVAAAYSLLVLAVP--------AGSALSRLALTTDVVLGMVL--AGAVASAGAISDIAKN 108

Query:   138 GNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTS 179
             GN+ A W   C    ++C  +  +LI  F A     +V++ S
Sbjct:   109 GNSHAGWLPVCGQIHAYCNHVMAALIAGFVALAVHFVVVMYS 150

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6T959	CASP1_MAIZE	No assigned EC number	0.6380	0.8655	0.8609	N/A	no
P0DI36	CSPL4_BRADI	No assigned EC number	0.6201	0.9569	0.9673	yes	no
P0DI34	CASP2_PANVG	No assigned EC number	0.5901	0.9623	0.9322	N/A	no
P0DI35	CSPL_LACSI	No assigned EC number	0.5474	0.9569	0.9270	N/A	no
B9T4E6	CSPL3_RICCO	No assigned EC number	0.5945	0.9892	0.9892	N/A	no
P0DI58	CSPL1_LOTJA	No assigned EC number	0.5376	0.9946	0.9893	N/A	no
B9S8Z3	CSPL1_RICCO	No assigned EC number	0.5513	0.9784	0.9528	N/A	no
A2XU91	CASP1_ORYSI	No assigned EC number	0.6303	0.8870	0.8870	N/A	no
D7M7B3	CASP5_ARALL	No assigned EC number	0.5361	0.8924	0.8877	N/A	no
A7PMY7	CASP3_VITVI	No assigned EC number	0.6547	0.9032	0.9032	yes	no
F2QA93	CASP_ORYRU	No assigned EC number	0.6303	0.8870	0.8870	N/A	no
P0DI54	CSPL_MALDO	No assigned EC number	0.6578	0.8172	0.8685	N/A	no
Q7XUV7	CASP1_ORYSJ	No assigned EC number	0.6303	0.8870	0.8870	yes	no
Q60D27	CSPL2_SOLDE	No assigned EC number	0.5351	0.9892	0.9945	N/A	no
C5Y9U6	CASP1_SORBI	No assigned EC number	0.5901	0.9623	0.9322	N/A	no
P0DI44	CASP_SOLTU	No assigned EC number	0.5567	0.9838	0.9734	N/A	no
P0DI42	CSPL_WHEAT	No assigned EC number	0.6033	0.9569	0.9726	N/A	no
Q9XI72	CSPL2_ARATH	No assigned EC number	0.5675	0.9623	0.8564	yes	no
B8AEC9	CSPL2_ORYSI	No assigned EC number	0.5465	0.8655	0.8009	N/A	no
D7KBH3	CSPL1_ARALL	No assigned EC number	0.5675	0.9623	0.8248	N/A	no
P0DI59	CSPL_LACSA	No assigned EC number	0.5670	0.8817	0.9162	N/A	no
G7L218	CSPL3_MEDTR	No assigned EC number	0.5642	0.9569	0.9569	N/A	no
Q67X40	CASP3_ORYSJ	No assigned EC number	0.6120	0.9784	0.9891	yes	no
B9SX12	CASP3_RICCO	No assigned EC number	0.5121	0.8817	0.82	N/A	no
A2YAZ1	CASP3_ORYSI	No assigned EC number	0.6120	0.9784	0.9891	N/A	no
C5Z7E3	CASP2_SORBI	No assigned EC number	0.6424	0.8817	0.8817	N/A	no
G7JG80	CSPL1_MEDTR	No assigned EC number	0.5240	1.0	0.9841	N/A	no
Q5NRN4	CSPL1_SOLDE	No assigned EC number	0.5351	0.9892	0.9945	N/A	no
B9I534	CASP1_POPTR	No assigned EC number	0.5783	0.9892	0.9892	yes	no
G7KGQ4	CSPL2_MEDTR	No assigned EC number	0.5537	1.0	1.0	N/A	no
P0DI33	CASP1_PANVG	No assigned EC number	0.6524	0.8763	0.8858	N/A	no
C6T1G0	CSPL1_SOYBN	No assigned EC number	0.5698	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsI_22263 membrane associated DUF588 domain containing protein, putative, expressed (184 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
TIGR01569	154	TIGR01569, A_tha_TIGR01569, plant integral membran	2e-45
pfam04535	150	pfam04535, DUF588, Domain of unknown function (DUF	8e-42

>gnl|CDD|233471 TIGR01569, A_tha_TIGR01569, plant integral membrane protein TIGR01569

 Score =  146 bits (371), Expect = 2e-45
 Identities = 64/154 (41%), Positives = 95/154 (61%)

Query: 30  LILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAI 89
           LILR +A + T  +AI M T  ET  VF Q    +A++ D P+F +FV+AN+I CGY  +
Sbjct: 1   LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLL 60

Query: 90  SVPLSIFHIIRTAAKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQ 149
           S+ +SIF +++       I L   DLVML L+++G S+A A+ Y+   GN  A W   C 
Sbjct: 61  SLVVSIFGLLKRRVFFKLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICG 120

Query: 150 LFDSFCERISGSLIGSFAAAVTLMLVIVTSAVAL 183
           +F  FC+RI+GSL  S  A + L+L+ + SA++L
Sbjct: 121 VFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized. Length = 154

>gnl|CDD|218134 pfam04535, DUF588, Domain of unknown function (DUF588)

 Score =  137 bits (347), Expect = 8e-42
 Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 22  NKGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANS 81
            + + + +L+LR  A      +A+ M T  +T   F  F Q +A + D P+F++ V+AN+
Sbjct: 1   GRPLRLAELVLRLAAFVLALAAAVVMGTNKQTKPFF--FIQKKASFSDLPAFRYLVVANA 58

Query: 82  IVCGYLAISVPLSIFHIIRTAAKKSRILLLVF--DLVMLTLVTAGASSATAIVYLAHKGN 139
           I  GY  + + LS++ + R   +   +  L+F  D VM  L+ A AS+A AIVYLA  GN
Sbjct: 59  IAAGYSLLQLVLSVYLLSRKKPRTKGLAWLLFILDQVMAYLLLAAASAAAAIVYLARNGN 118

Query: 140 TSANWFAFCQLFDSFCERISGSLIGSFAAAV 170
           + ANW   C  F  FC R + S+  SF A +
Sbjct: 119 SHANWMKICNQFGRFCNRAAASVALSFLAFL 149

This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	100.0
PF04535	149	DUF588: Domain of unknown function (DUF588); Inter	100.0
PF01284	144	MARVEL: Membrane-associating domain; InterPro: IPR	98.67

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=100.00  E-value=5.9e-46  Score=294.00  Aligned_cols=154  Identities=42%  Similarity=0.745  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccceeccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhH
Q 044764           30 LILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKKSRIL  109 (186)
Q Consensus        30 l~LR~~a~~~slaa~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~~~~~~~~~~~  109 (186)
                      ++||+++++++++|+++|+||+|+.+++++.+++++||+|+++|+|+|++|+|+|+|+++|++++++++.+++....+|+
T Consensus         1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~   80 (154)
T TIGR01569         1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA   80 (154)
T ss_pred             CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            46999999999999999999999998776557889999999999999999999999999999999998877766656799


Q ss_pred             HHhHHHHHHHHHHHhhhhHHHHHHHHHhCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044764          110 LLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIVTSAVAL  183 (186)
Q Consensus       110 ~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsfla~~~~~~~s~lS~~~L  183 (186)
                      +|++||+++||++||++||+++++++|+||+|.+|+|+|+++++||||+.+|++++|+|++++++++++|++++
T Consensus        81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~  154 (154)
T TIGR01569        81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL  154 (154)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999985

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity

Probab=100.00  E-value=8.6e-40  Score=256.79  Aligned_cols=147  Identities=35%  Similarity=0.612  Sum_probs=136.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhccccceeccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044764           23 KGISILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTA  102 (186)
Q Consensus        23 ~~~~~~~l~LR~~a~~~slaa~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~~~~  102 (186)
                      |+.+..+++||+++++++++|+++|++|+|+.++..  .+.+++|+|+++|+|++++|+|+|+|+++|++.+++.+.+++
T Consensus         1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~--~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~   78 (149)
T PF04535_consen    1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFS--IQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK   78 (149)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeec--cccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            456889999999999999999999999999987653  678999999999999999999999999999999999887654


Q ss_pred             --ccchhhHHHhHHHHHHHHHHHhhhhHHHHHHHHHhCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 044764          103 --AKKSRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVT  171 (186)
Q Consensus       103 --~~~~~~~~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsfla~~~  171 (186)
                        .+...|++|++||+++||++||++||+++++++++||++.+|+++|+.+++||+|+++|++++|+|+++
T Consensus        79 ~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~  149 (149)
T PF04535_consen   79 LRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA  149 (149)
T ss_pred             CcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence              234568999999999999999999999999999999999999999999999999999999999999874

It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain

Probab=98.67  E-value=7.4e-07  Score=67.77  Aligned_cols=141  Identities=16%  Similarity=0.040  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccceeccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 044764           26 SILDLILRTIAAAGTFGSAIAMATTNETLTVFPQFTQVRAEYDDHPSFKFFVIANSIVCGYLAISVPLSIFHIIRTAAKK  105 (186)
Q Consensus        26 ~~~~l~LR~~a~~~slaa~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~~~~~~~  105 (186)
                      +....+||+++++++++.+.+++....+..        .......++..|.+.+.++...+++.-++...+...+.....
T Consensus         3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~   74 (144)
T PF01284_consen    3 RSPSGILRILQLVFALIIFGLVASSIATGS--------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIP   74 (144)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHHHHhccc--------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            345689999999999999999998764221        123456678899999999999999988888776521122233


Q ss_pred             hhhHHHhHHHHHHHHHHHhhhhHHHHHHHHHhCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044764          106 SRILLLVFDLVMLTLVTAGASSATAIVYLAHKGNTSANWFAFCQLFDSFCERISGSLIGSFAAAVTLMLVIV  177 (186)
Q Consensus       106 ~~~~~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsfla~~~~~~~s~  177 (186)
                      +.+.+++.|.+++.+-+.+..+-+.-..-.+.+++   +...+...++-|+...++.+++|+.++++..+.+
T Consensus        75 ~~~~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~  143 (144)
T PF01284_consen   75 WPLVEFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV  143 (144)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999998876654332211111111   2233344456799999999999999999988765

The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00