Citrus Sinensis ID: 044772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTISTEQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEccccccEEEEEEEccccccccccccccccccEEEEEEccEEEEEEEEEcccccccccccccccccccEEEEEEEcccccccccccccccHHHHHHccccccEEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHcEEEEEEEEEcccccHHHHHHHHHHccccccccccccccEEEEEEccccEEEEEEEcccccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHccHHHHHHHHcccccEEEEEEcHHHcccHccccHcHHHHHHHccc
Coil and Loop (DISEMBL)
mtsttasalsssttttttATKFIKcvtvrdgavgkTCLLISytgntfptdyvptvfdnfsanvmvdgrtvnlglwdtagqedynrlrplsyrgaDVFILAFSlisrpsyeniskkkwvpelrhyapsvpivlvgtkldlrkdrqfhldypgaytisteq
Flexible Loop (DISEMBL)
mtsttasalsssttttttatkfikcvtvrdgaVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFslisrpsyeniSKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQfhldypgaytisteq
Low Complexity Region (SEG)
MtsttasalsssttttttatKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTISTEQ
Disordered region (IsUnstruct)
********************KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTI****
Disordered Region (DISOPRED)
************************CVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ***************
Disordered Region (DISEMBL)
****************TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTISTEQ
Disordered Region (DISPRO)
****************TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTISTEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q6EP31	197	Rac-like GTP-binding prot	yes	no	0.886	0.715	0.830	1e-67
Q38919	195	Rac-like GTP-binding prot	yes	no	0.880	0.717	0.836	1e-67
Q38937	196	Rac-like GTP-binding prot	yes	no	0.886	0.719	0.823	3e-67
Q40220	196	Rac-like GTP-binding prot	N/A	no	0.867	0.704	0.848	3e-67
Q39435	197	Rac-like GTP-binding prot	N/A	no	0.886	0.715	0.830	4e-67
Q38902	197	Rac-like GTP-binding prot	no	no	0.886	0.715	0.830	5e-67
Q38912	198	Rac-like GTP-binding prot	no	no	0.886	0.712	0.823	6e-67
Q35638	197	Rac-like GTP-binding prot	N/A	no	0.886	0.715	0.823	7e-67
P92978	197	Rac-like GTP-binding prot	no	no	0.886	0.715	0.823	7e-67
Q9SBJ6	197	Rac-like GTP-binding prot	no	no	0.886	0.715	0.830	8e-67

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  255 bits (651), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVF+LAFSLIS+ SYEN+S KKW+PELRHYAP VPI+LVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVS-KKWIPELRHYAPGVPIILVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  IST Q
Sbjct: 121 DLRDDKQFFVDHPGAVPISTAQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38919|RAC4_ARATH Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1

 Score =  254 bits (649), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 130/141 (92%), Gaps = 1/141 (0%)

Query: 19  ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTA 78
           A++FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTA
Sbjct: 2   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61

Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD 138
           GQEDYNRLRPLSYRGADVFILAFSLIS+ SYENI+ KKW+PELRHYAP VPI+LVGTKLD
Sbjct: 62  GQEDYNRLRPLSYRGADVFILAFSLISKASYENIA-KKWIPELRHYAPGVPIILVGTKLD 120

Query: 139 LRKDRQFHLDYPGAYTISTEQ 159
           LR D+QF +D+PGA  I+T Q
Sbjct: 121 LRDDKQFFIDHPGAVPITTNQ 141

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of root hairs. May regulate a WAVE complex that activates the Arp2/3 complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38937|RAC5_ARATH Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1

 Score =  253 bits (647), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN++ KKW+PELRHYAP VPI+LVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  I+T Q
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40220|RAC2_LOTJA Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1

 Score =  253 bits (647), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 118/139 (84%), Positives = 130/139 (93%), Gaps = 1/139 (0%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           +FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDYNRLRPLSYRGADVF+LAFSL+SR SYENIS KKW+PELRHYAP+VPIVLVGTKLDLR
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLLSRASYENIS-KKWIPELRHYAPTVPIVLVGTKLDLR 123

Query: 141 KDRQFHLDYPGAYTISTEQ 159
           +DRQ+ +D+PGA  I+T Q
Sbjct: 124 EDRQYLIDHPGATPITTAQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Lotus japonicus (taxid: 34305)

>sp|Q39435|RAC1_BETVU Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1

 Score =  253 bits (646), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PEL+HYAP VPIVLVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIVLVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  I+T Q
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Beta vulgaris (taxid: 161934)

>sp|Q38902|RAC1_ARATH Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1

 Score =  253 bits (645), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PEL+HYAP VPIVLVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIVLVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  I+T Q
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38912|RAC3_ARATH Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1

 Score =  252 bits (644), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 130/142 (91%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+VDG T+NLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ SYEN+S KKWVPELRHYAP VPI+LVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVS-KKWVPELRHYAPGVPIILVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF  ++PGA  IST Q
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. May be involved in cell polarity control during the actin-dependent tip growth of root hairs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1

 Score =  252 bits (644), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PEL+HYAP VPI+LVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIILVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  I+T Q
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes.

Pisum sativum (taxid: 3888)

>sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2

 Score =  252 bits (643), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++F+KCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDT
Sbjct: 2   SASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PEL+HYAP VPIVLVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIVLVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  I+T Q
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SBJ6|RAC6_ARATH Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2

 Score =  252 bits (643), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PEL+HYAP VPIVLVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIVLVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  I+T Q
Sbjct: 121 DLRDDKQFFIDHPGAVPITTVQ 142

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255571061	202	rac gtpase, putative [Ricinus communis]	0.905	0.712	0.910	1e-72
224136386	195	predicted protein [Populus trichocarpa]	0.886	0.723	0.929	7e-72
225453321	198	PREDICTED: rac-like GTP-binding protein	0.899	0.722	0.875	4e-71
449432376	202	PREDICTED: rac-like GTP-binding protein	0.867	0.683	0.863	8e-67
91107198	198	Rac-like GTP-binding protein [Solanum ch	0.886	0.712	0.838	1e-66
4097583	198	NTGP3 [Nicotiana tabacum] gi|27527519|em	0.886	0.712	0.838	1e-66
27527521	164	putative rac protein [Nicotiana tabacum]	0.880	0.853	0.852	2e-66
297824495	205	hypothetical protein ARALYDRAFT_322132 [	0.937	0.726	0.798	3e-66
358248203	197	uncharacterized protein LOC100798550 [Gl	0.886	0.715	0.838	4e-66
194699104	197	unknown [Zea mays] gi|195642986|gb|ACG40	0.886	0.715	0.838	4e-66

>gi|255571061|ref|XP_002526481.1| rac gtpase, putative [Ricinus communis] gi|223534156|gb|EEF35872.1| rac gtpase, putative [Ricinus communis]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/145 (91%), Positives = 136/145 (93%), Gaps = 1/145 (0%)

Query: 15  TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGL 74
           +  T TKFIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANVMVDG+TVNLGL
Sbjct: 5   SAATTTKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVMVDGKTVNLGL 64

Query: 75  WDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVG 134
           WDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENIS KKWVPELRHYAPSVPI+LVG
Sbjct: 65  WDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENIS-KKWVPELRHYAPSVPIILVG 123

Query: 135 TKLDLRKDRQFHLDYPGAYTISTEQ 159
           TKLDLR+D QFHLDYPGA TIS EQ
Sbjct: 124 TKLDLREDGQFHLDYPGACTISREQ 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136386|ref|XP_002326847.1| predicted protein [Populus trichocarpa] gi|222835162|gb|EEE73597.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (702), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 132/142 (92%), Positives = 136/142 (95%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           T TKFIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+VDG+TVNLGLWDT
Sbjct: 1   TTTKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVLVDGQTVNLGLWDT 60

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLISRPSYEN+S KKWVPELRHYAPSVPIVLVGTKL
Sbjct: 61  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENVS-KKWVPELRHYAPSVPIVLVGTKL 119

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR+DRQF LDYPGA TISTEQ
Sbjct: 120 DLREDRQFLLDYPGACTISTEQ 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453321|ref|XP_002269907.1| PREDICTED: rac-like GTP-binding protein 7 [Vitis vinifera] gi|297734644|emb|CBI16695.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/144 (87%), Positives = 137/144 (95%), Gaps = 1/144 (0%)

Query: 16  TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLW 75
           +T  ++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+ DG+T+NLGLW
Sbjct: 2   STVPSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVLADGQTINLGLW 61

Query: 76  DTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGT 135
           DTAGQEDYNRLRPLSYRGADVF+LAFSLISRPS+ENIS KKWVPELRHYAPSVPIVLVGT
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFLLAFSLISRPSFENIS-KKWVPELRHYAPSVPIVLVGT 120

Query: 136 KLDLRKDRQFHLDYPGAYTISTEQ 159
           KLDLR+D+QFH+DYPGA TISTEQ
Sbjct: 121 KLDLREDKQFHMDYPGACTISTEQ 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432376|ref|XP_004133975.1| PREDICTED: rac-like GTP-binding protein 7-like [Cucumis sativus] gi|449487546|ref|XP_004157680.1| PREDICTED: rac-like GTP-binding protein 7-like [Cucumis sativus]

 Score =  258 bits (658), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 120/139 (86%), Positives = 132/139 (94%), Gaps = 1/139 (0%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           KFIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G++VNLGLWDTAGQ
Sbjct: 11  KFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVLVNGQSVNLGLWDTAGQ 70

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDY+RLRPLSYRGADVF+LAFS+ISR S+ENIS KKW+PELRHYAPSVPI+LVGTKLDLR
Sbjct: 71  EDYSRLRPLSYRGADVFLLAFSIISRASFENIS-KKWIPELRHYAPSVPIILVGTKLDLR 129

Query: 141 KDRQFHLDYPGAYTISTEQ 159
           +D QF LDYPGA TIST+Q
Sbjct: 130 EDEQFLLDYPGACTISTKQ 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91107198|gb|ABE11611.1| Rac-like GTP-binding protein [Solanum chacoense]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/142 (83%), Positives = 132/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PELRHYAP VPI+LVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELRHYAPGVPIILVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR+D+QF +D+PGA  +ST Q
Sbjct: 121 DLREDKQFFVDHPGAVPLSTAQ 142

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097583|gb|AAD00118.1| NTGP3 [Nicotiana tabacum] gi|27527519|emb|CAD42723.1| putative rac protein [Nicotiana tabacum]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/142 (83%), Positives = 132/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PELRHYAP VPI+LVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELRHYAPGVPIILVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR+D+QF LD+PGA  ++T Q
Sbjct: 121 DLREDKQFFLDHPGAVPLTTAQ 142

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27527521|emb|CAD42724.1| putative rac protein [Nicotiana tabacum]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/149 (85%), Positives = 132/149 (88%), Gaps = 9/149 (6%)

Query: 19  ATKFIKCVTVRDGAVGKTCLLISYTG--------NTFPTDYVPTVFDNFSANVMVDGRTV 70
            TKFIKCVTV DGAVGKTCLLISYT         NTFPTDYVPTVFDNFSANV VDG+ V
Sbjct: 16  GTKFIKCVTVGDGAVGKTCLLISYTSCLLISYTSNTFPTDYVPTVFDNFSANVNVDGKIV 75

Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI 130
           NLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISRPS+ENIS KKWVPELRHYAPSVPI
Sbjct: 76  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRPSFENIS-KKWVPELRHYAPSVPI 134

Query: 131 VLVGTKLDLRKDRQFHLDYPGAYTISTEQ 159
           VLVGTKLDLR+D+QF  DYPGA TISTEQ
Sbjct: 135 VLVGTKLDLREDKQFRRDYPGASTISTEQ 163

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824495|ref|XP_002880130.1| hypothetical protein ARALYDRAFT_322132 [Arabidopsis lyrata subsp. lyrata] gi|297325969|gb|EFH56389.1| hypothetical protein ARALYDRAFT_322132 [Arabidopsis lyrata subsp. lyrata]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/154 (79%), Positives = 138/154 (89%), Gaps = 5/154 (3%)

Query: 6   ASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV 65
           ++++++  T +TTAT FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V
Sbjct: 2   SASVAAIATPSTTATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVLV 61

Query: 66  DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA 125
           DG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS+ENI+KK     LRHYA
Sbjct: 62  DGKTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSFENIAKK-----LRHYA 116

Query: 126 PSVPIVLVGTKLDLRKDRQFHLDYPGAYTISTEQ 159
           P+VPIVLVGTKLDLR D+ F ++YPGA TIS EQ
Sbjct: 117 PTVPIVLVGTKLDLRDDKLFPMNYPGACTISKEQ 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248203|ref|NP_001240094.1| uncharacterized protein LOC100798550 [Glycine max] gi|255626893|gb|ACU13791.1| unknown [Glycine max]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/142 (83%), Positives = 132/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYENI+ KKW+PELRHYAP VPI+LVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENIA-KKWIPELRHYAPGVPIILVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR+D+QF +D+PGA  I+T Q
Sbjct: 121 DLREDKQFFIDHPGAVPITTTQ 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194699104|gb|ACF83636.1| unknown [Zea mays] gi|195642986|gb|ACG40961.1| rac-like GTP-binding protein 5 [Zea mays] gi|413939622|gb|AFW74173.1| rop4 small GTP binding protein [Zea mays]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/142 (83%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVF+LAFSLIS+ SYEN+S KKWVPELRHYAP VPI+LVGTKL
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVS-KKWVPELRHYAPGVPIILVGTKL 120

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  IST Q
Sbjct: 121 DLRDDKQFFVDHPGAVPISTAQ 142

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.867	0.707	0.841	2.1e-61
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.867	0.704	0.834	2.7e-61
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.867	0.696	0.834	5.5e-61
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	0.867	0.700	0.827	7.1e-61
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	0.867	0.700	0.841	7.1e-61
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	0.867	0.700	0.834	9e-61
TAIR|locus:2125399	197	RAC6 "RAC-like 6" [Arabidopsis	0.867	0.700	0.841	9e-61
TAIR|locus:2042326	209	ARAC9 "Arabidopsis RAC-like 9"	0.861	0.655	0.855	3.1e-60
TAIR|locus:2161343	201	RAC2 "RAC-like 2" [Arabidopsis	0.867	0.686	0.827	1e-59
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.867	0.644	0.784	1.4e-57

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 117/139 (84%), Positives = 128/139 (92%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct:     4 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ 63

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVFILAFSLIS+ SYENI+KK W+PELRHYAP VPI+LVGTKLDLR
Sbjct:    64 EDYNRLRPLSYRGADVFILAFSLISKASYENIAKK-WIPELRHYAPGVPIILVGTKLDLR 122

Query:   141 KDRQFHLDYPGAYTISTEQ 159
              D+QF +D+PGA  I+T Q
Sbjct:   123 DDKQFFIDHPGAVPITTNQ 141

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 116/139 (83%), Positives = 128/139 (92%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct:     5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ 64

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVFILAFSLIS+ SYEN++KK W+PELRHYAP VPI+LVGTKLDLR
Sbjct:    65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKK-WIPELRHYAPGVPIILVGTKLDLR 123

Query:   141 KDRQFHLDYPGAYTISTEQ 159
              D+QF +D+PGA  I+T Q
Sbjct:   124 DDKQFFIDHPGAVPITTNQ 142

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 116/139 (83%), Positives = 127/139 (91%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+VDG T+NLGLWDTAGQ
Sbjct:     5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQ 64

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVF+LAFSL+S+ SYEN+SKK WVPELRHYAP VPI+LVGTKLDLR
Sbjct:    65 EDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKK-WVPELRHYAPGVPIILVGTKLDLR 123

Query:   141 KDRQFHLDYPGAYTISTEQ 159
              D+QF  ++PGA  IST Q
Sbjct:   124 DDKQFFAEHPGAVPISTAQ 142

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 115/139 (82%), Positives = 128/139 (92%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct:     5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ 64

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVF+LAFSLIS+ SYEN+SKK W+PEL+HYAP VPI+LVGTKLDLR
Sbjct:    65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVSKK-WIPELKHYAPGVPIILVGTKLDLR 123

Query:   141 KDRQFHLDYPGAYTISTEQ 159
              D+QF +D+PGA  I+T Q
Sbjct:   124 DDKQFFVDHPGAVPITTAQ 142

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 117/139 (84%), Positives = 128/139 (92%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDTAGQ
Sbjct:     5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 64

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVFILAFSLIS+ SYEN+SKK W+PEL+HYAP VPIVLVGTKLDLR
Sbjct:    65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKK-WIPELKHYAPGVPIVLVGTKLDLR 123

Query:   141 KDRQFHLDYPGAYTISTEQ 159
              D+QF +D+PGA  I+T Q
Sbjct:   124 DDKQFFIDHPGAVPITTAQ 142

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 116/139 (83%), Positives = 128/139 (92%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +F+KCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDTAGQ
Sbjct:     5 RFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVFILAFSLIS+ SYEN+SKK W+PEL+HYAP VPIVLVGTKLDLR
Sbjct:    65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKK-WIPELKHYAPGVPIVLVGTKLDLR 123

Query:   141 KDRQFHLDYPGAYTISTEQ 159
              D+QF +D+PGA  I+T Q
Sbjct:   124 DDKQFFIDHPGAVPITTAQ 142

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

TAIR|locus:2125399 RAC6 "RAC-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 117/139 (84%), Positives = 128/139 (92%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDTAGQ
Sbjct:     5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 64

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVFILAFSLIS+ SYEN+SKK W+PEL+HYAP VPIVLVGTKLDLR
Sbjct:    65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKK-WIPELKHYAPGVPIVLVGTKLDLR 123

Query:   141 KDRQFHLDYPGAYTISTEQ 159
              D+QF +D+PGA  I+T Q
Sbjct:   124 DDKQFFIDHPGAVPITTVQ 142

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2042326 ARAC9 "Arabidopsis RAC-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 118/138 (85%), Positives = 127/138 (92%)

Query:    22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE 81
             FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNF+ANV+VDG+TVNLGLWDTAGQE
Sbjct:    18 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDTAGQE 77

Query:    82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
             DYNR+RPLSYRGADVFILAFSLISRPS+ENI+KK WVPELRHYAP+VPIVLVGTK DLR 
Sbjct:    78 DYNRVRPLSYRGADVFILAFSLISRPSFENIAKK-WVPELRHYAPTVPIVLVGTKSDLRD 136

Query:   142 DRQFHLDYPGAYTISTEQ 159
             + QF  +YPGA TI  EQ
Sbjct:   137 NMQFPKNYPGACTIFPEQ 154

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

TAIR|locus:2161343 RAC2 "RAC-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 115/139 (82%), Positives = 127/139 (91%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct:     5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVF+LAFSLIS+ SYENI KK W+PEL+HYAP +PIVLVGTKLDLR
Sbjct:    65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKK-WLPELKHYAPGIPIVLVGTKLDLR 123

Query:   141 KDRQFHLDYPGAYTISTEQ 159
              D+QF  D+PGA +I+T Q
Sbjct:   124 DDKQFLKDHPGAASITTAQ 142

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 109/139 (78%), Positives = 123/139 (88%)

Query:    21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
             +FIKCVTV DGAVGKTC+LI YT N FPTDY+PTVFDNFSANV+VD  TVNLGLWDTAGQ
Sbjct:     7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDTAGQ 66

Query:    81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             EDYNRLRPLSYRGADVF+LAFSL+SR SYENI KK W+PEL+HYAP VPIVLVGTKLDLR
Sbjct:    67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKK-WIPELQHYAPGVPIVLVGTKLDLR 125

Query:   141 KDRQFHLDYPGAYTISTEQ 159
             +D+ + LD+PG   ++T Q
Sbjct:   126 EDKHYLLDHPGMIPVTTAQ 144

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9TU25	RAC2_BOVIN	No assigned EC number	0.7272	0.7547	0.625	yes	no
P34146	RAC1C_DICDI	No assigned EC number	0.6690	0.8553	0.7046	yes	no
Q6ZHA3	RAC6_ORYSJ	No assigned EC number	0.8169	0.8867	0.7157	yes	no
Q41253	RAC13_GOSHI	No assigned EC number	0.8345	0.8679	0.7040	N/A	no
Q41254	RAC9_GOSHI	No assigned EC number	0.8357	0.8742	0.7091	N/A	no
Q05144	RAC2_MOUSE	No assigned EC number	0.7272	0.7547	0.625	yes	no
P15153	RAC2_HUMAN	No assigned EC number	0.7272	0.7547	0.625	yes	no
O04369	RAC1_LOTJA	No assigned EC number	0.8309	0.8867	0.7157	N/A	no
P48554	RAC2_DROME	No assigned EC number	0.7131	0.7610	0.6302	yes	no
Q40220	RAC2_LOTJA	No assigned EC number	0.8489	0.8679	0.7040	N/A	no
Q03206	RAC1_CAEEL	No assigned EC number	0.6942	0.7547	0.6282	yes	no
Q38919	RAC4_ARATH	No assigned EC number	0.8368	0.8805	0.7179	yes	no
Q35638	RHO1_PEA	No assigned EC number	0.8239	0.8867	0.7157	N/A	no
Q38937	RAC5_ARATH	No assigned EC number	0.8239	0.8867	0.7193	yes	no
Q39435	RAC1_BETVU	No assigned EC number	0.8309	0.8867	0.7157	N/A	no
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.8309	0.8867	0.7157	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019041001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (199 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	7e-95
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-80
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-80
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-72
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-60
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-60
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-59
pfam00071	162	pfam00071, Ras, Ras family	2e-58
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-56
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-56
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	6e-53
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-45
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	8e-42
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-40
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	9e-39
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-36
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-33
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-33
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	7e-32
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-29
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	5e-29
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-28
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	9e-28
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-27
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	8e-27
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-26
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-26
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-25
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-24
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	6e-24
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	9e-24
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-23
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-23
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-22
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-22
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-22
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-21
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-21
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-21
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	7e-21
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-20
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-20
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-20
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-20
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-20
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-20
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-20
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-20
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-19
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-19
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-19
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-19
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	5e-19
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-19
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-18
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-18
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	9e-18
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-17
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-17
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-17
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-17
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	4e-17
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-17
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-17
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-17
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-16
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	7e-16
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-15
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-15
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-15
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	5e-15
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-14
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-14
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	5e-14
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-13
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-13
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-13
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	6e-13
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-12
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-11
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	7e-11
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	9e-11
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	9e-11
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-09
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-09
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-08
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	5e-08
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	5e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.003

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  271 bits (695), Expect = 7e-95
 Identities = 116/138 (84%), Positives = 125/138 (90%), Gaps = 1/138 (0%)

Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE 81
           FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
           DYNRLRPLSYRGADVF+LAFSLIS+ SYEN+  KKW+PELRHYAP VPIVLVGTKLDLR 
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVL-KKWIPELRHYAPGVPIVLVGTKLDLRD 119

Query: 142 DRQFHLDYPGAYTISTEQ 159
           D+QF  D+PGA  I+T Q
Sbjct: 120 DKQFFADHPGAVPITTAQ 137

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  235 bits (602), Expect = 1e-80
 Identities = 87/120 (72%), Positives = 101/120 (84%), Gaps = 1/120 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IK V V DGAVGKTCLLISYT N FPT+YVPTVFDN+SANV VDG+ VNLGLWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF+L FS+ S  S+EN+ K KW PE++HY P+VPI+LVGTK+DLR D
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENV-KTKWYPEIKHYCPNVPIILVGTKIDLRDD 119

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  235 bits (601), Expect = 2e-80
 Identities = 84/137 (61%), Positives = 103/137 (75%), Gaps = 3/137 (2%)

Query: 25  CVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN 84
            V V DGAVGKTCLLI YT N FP DYVPTVF+N+SA+V VDG+ V LGLWDTAGQEDY+
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 85  RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
           RLRPLSY   DVF++ FS+ S  S+EN+ K+KW PE++H+ P+VPI+LVGTKLDLR D+ 
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENV-KEKWYPEVKHFCPNVPIILVGTKLDLRNDKS 119

Query: 145 FH--LDYPGAYTISTEQ 159
               L       ++ EQ
Sbjct: 120 TLEELSKKKQEPVTYEQ 136

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  215 bits (549), Expect = 1e-72
 Identities = 87/122 (71%), Positives = 103/122 (84%), Gaps = 1/122 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 120

Query: 143 RQ 144
           + 
Sbjct: 121 KD 122

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  184 bits (470), Expect = 3e-60
 Identities = 64/123 (52%), Positives = 86/123 (69%), Gaps = 2/123 (1%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-DGRTVNLGLWDTAGQE 81
           +K V V DG  GKTCLL+ Y   +FP +YVPTVF+N+   + V +G+ + L LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
           DY+RLRPLSY   DV ++ +S+ +  S +N+ + KW PE+ H+ P  PIVLVG K DLRK
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNV-EDKWYPEVNHFCPGTPIVLVGLKTDLRK 122

Query: 142 DRQ 144
           D+ 
Sbjct: 123 DKN 125

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  183 bits (467), Expect = 3e-60
 Identities = 77/122 (63%), Positives = 96/122 (78%), Gaps = 1/122 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 120

Query: 143 RQ 144
             
Sbjct: 121 PS 122

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  183 bits (465), Expect = 1e-59
 Identities = 80/122 (65%), Positives = 95/122 (77%), Gaps = 1/122 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLI YT N FP +Y+PTVFDN+SA   VDGRTV+L LWDTAGQE+
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLR LSY   +VFI+ FS+ S  SYEN+ + KW PE+ H+ P+VPI+LVGTK DLR D
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENV-RHKWHPEVCHHCPNVPILLVGTKKDLRND 122

Query: 143 RQ 144
             
Sbjct: 123 AD 124

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  178 bits (455), Expect = 2e-58
 Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V V DG VGK+ LLI +T N FP +Y+PT+  D ++  + VDG+TV L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRK 141
           +  LRPL YRGA  F+L + + SR S+EN+  KKW+ E+  +A  +VPIVLVG K DL  
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV--KKWLEEILRHADENVPIVLVGNKCDLED 118

Query: 142 DRQ 144
            R 
Sbjct: 119 QRV 121

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  173 bits (440), Expect = 4e-56
 Identities = 70/120 (58%), Positives = 94/120 (78%), Gaps = 1/120 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           +KCV V DGAVGKT L++SYT N +PT+YVPT FDNFS  V+VDG+ V L L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +++LRPL Y   DVF+L FS+++  S++NIS +KW+PE+R + P  PI+LVGT+ DLR D
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNIS-EKWIPEIRKHNPKAPIILVGTQADLRTD 119

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  173 bits (440), Expect = 4e-56
 Identities = 71/119 (59%), Positives = 89/119 (74%), Gaps = 1/119 (0%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENI-PEKWTPEVKHFCPNVPIILVGNKKDLRND 120

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  165 bits (419), Expect = 6e-53
 Identities = 71/120 (59%), Positives = 98/120 (81%), Gaps = 1/120 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           +KCV V DGAVGKTCLL+SY  + FP +YVPTVFD+++ +V V G+   LGL+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS+++  S++N+ K++WVPEL+ YAP+VP +L+GT++DLR D
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNV-KEEWVPELKEYAPNVPYLLIGTQIDLRDD 119

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  146 bits (371), Expect = 2e-45
 Identities = 62/119 (52%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKT LL  +T   FP +Y PTVF+N+  +  VDG+ V L LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
            RLRPLSY  A V ++ F++ +  S EN+   KW+ E+R Y P+VP++LVG K DLR++
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVR-TKWIEEVRRYCPNVPVILVGLKKDLRQE 120

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  136 bits (345), Expect = 8e-42
 Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
            K V + D  VGKT LL+ +  N F  +Y  T+  +F S  + VDG+ V L +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLR 140
            +  +    YRGA   IL + + +R S+EN+   KW+ EL+ YAP  +PI+LVG K DL 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL--DKWLNELKEYAPPNIPIILVGNKSDLE 118

Query: 141 KDRQ 144
            +RQ
Sbjct: 119 DERQ 122

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  134 bits (339), Expect = 1e-40
 Identities = 65/136 (47%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V + DGA GKT LL  +T   FP  Y PTVF+N+  ++ VDG  V L LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLR LSY    V +L FS+ +  S EN+ + KW+ E+RH+ P V +VLV  K DLR+ R
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENV-ESKWLAEIRHHCPGVKLVLVALKCDLREPR 120

Query: 144 QFHLDYPGAYTISTEQ 159
                  G +TIS E+
Sbjct: 121 NERDR--GTHTISYEE 134

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  129 bits (326), Expect = 9e-39
 Identities = 54/120 (45%), Positives = 76/120 (63%), Gaps = 1/120 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V V D   GKT LL  +  ++FP +YVPTVF+N++A+  VD + + L LWDT+G   
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+ +RPLSY  +D  ++ F  ISRP   +   KKW  E+R + P+ P++LVG K DLR D
Sbjct: 62  YDNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTD 120

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  122 bits (308), Expect = 3e-36
 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQE 81
            K + + D  VGK+ LL  +T   F   Y  T+  +F    + VDG+ V L +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLR 140
            +  +    YRGA   +L + + +R S+EN+  + W+ ELR YA   V I+LVG K DL 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENL--ENWLKELREYASPNVVIMLVGNKSDLE 118

Query: 141 KDRQ 144
           + RQ
Sbjct: 119 EQRQ 122

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  115 bits (291), Expect = 1e-33
 Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNT-FPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
           IK V V D  VGK+ LL    GN    T+Y P    N+ +  +  DG+T    L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPS-VPIVLVGTKLD 138
           EDY+ +R L YR  +  +  F ++      E I  +K   E+ H+A S VPI+LVG K+D
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEI-LEKQTKEIIHHAESGVPIILVGNKID 120

Query: 139 LR 140
           LR
Sbjct: 121 LR 122

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  117 bits (294), Expect = 1e-33
 Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 3/128 (2%)

Query: 19  ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDT 77
             K  K V + DG VGKT LL    G+ FP  Y PT+ +   A  +    R + L LWDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTK 136
           AGQE+Y  LRP  YRGA+  ++ +    R S + +  ++W+ ELR  AP  VPI+LVG K
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDEL-TEEWLEELRELAPDDVPILLVGNK 120

Query: 137 LDLRKDRQ 144
           +DL  ++ 
Sbjct: 121 IDLFDEQS 128

Length = 219

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  111 bits (279), Expect = 7e-32
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L I +    F  +Y PT+ D++   ++VDG T  L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           + +R    R  D FIL +S+ SR S+E I   ++ +  ++     VPIVLVG K DL  +
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKD-KEDVPIVLVGNKCDLENE 119

Query: 143 RQ 144
           RQ
Sbjct: 120 RQ 121

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  105 bits (264), Expect = 2e-29
 Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 1/119 (0%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V D   GKT LL  +  + FP +YVPTVF+N++A+  +D + + L LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           + +RPLSY  +D  ++ F  ISRP   +   KKW  E++ + P+  ++LVG K DLR D
Sbjct: 67  DNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 124

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  105 bits (264), Expect = 5e-29
 Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V D   GKT LL  +  + +P  YVPTVF+N++A+  +D   + L +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           + +RPL+Y  +D  ++ F  ISRP   +   KKW  E + + P+  +VLVG KLD+R D
Sbjct: 63  DNVRPLAYPDSDAVLICFD-ISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTD 120

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  101 bits (254), Expect = 5e-28
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L I +    F  DY PT+ D++   + +DG    L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           + +R    R  + F+L +S+  R S+E I K ++ +  ++     VPIVLVG K DL  +
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLESE 120

Query: 143 RQ 144
           R 
Sbjct: 121 RV 122

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  100 bits (252), Expect = 9e-28
 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L I +    F  +Y PT+ D++   + +DG    L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           + +R    R  + F+L +S+  R S+E I+K ++ +  ++     VPIVLVG K DL  +
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRD-DVPIVLVGNKCDLENE 122

Query: 143 RQ 144
           R 
Sbjct: 123 RV 124

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 99.6 bits (249), Expect = 3e-27
 Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
            K V + +G VGKT L++ Y  N F   +  T   +F    V + G+ ++L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            Y+ L P+ YR AD  IL + +    S++ +  KKW+ EL+     ++ +V+VG K+DL 
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKV--KKWIKELKQMRGNNISLVIVGNKIDLE 118

Query: 141 KDRQ 144
           + R 
Sbjct: 119 RQRV 122

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  100 bits (250), Expect = 8e-27
 Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V D   GKT +L     + +P  YVPTVF+N++A +  + + V L LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           + +RPL Y  +D  +L F  ISRP   + + KKW  E+  Y PS  I+L+G K DLR D
Sbjct: 75  DNVRPLCYSDSDAVLLCFD-ISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTD 132

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 98.3 bits (245), Expect = 1e-26
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGR--TVNLGLWDTAG 79
           IK + V +G VGK+ ++  +    F  DY  T+  +F    + +      V L LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           QE+++ +    YRGA   IL FS   R S+E I    W  ++      +P+VLV TK+DL
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIE--SWKEKVEAECGDIPMVLVQTKIDL 118

Query: 140 RKD 142
              
Sbjct: 119 LDQ 121

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 96.9 bits (242), Expect = 3e-26
 Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 6/124 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + D +VGKT ++  +  +TF   Y  T+  D  S  + VD +TV L LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 83  YNRLRPLSY-RGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLR 140
           +  L P SY R + V ++ + + +R S++N    KW+ ++R    + V IVLVG K DL 
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT--DKWIDDVRDERGNDVIIVLVGNKTDLS 118

Query: 141 KDRQ 144
             RQ
Sbjct: 119 DKRQ 122

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 93.8 bits (234), Expect = 4e-25
 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 8/125 (6%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV---FDNFSANVMVDGRTVNLGLWDTAGQ 80
           K V + D +VGK+ +++ +  N F  +   T+   F   +  V +D  TV   +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQ 60

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDL 139
           E Y  L P+ YRGA   I+ + + S  S+E    K WV EL+ H  P++ I L G K DL
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKA--KSWVKELQEHGPPNIVIALAGNKADL 118

Query: 140 RKDRQ 144
              RQ
Sbjct: 119 ESKRQ 123

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 91.6 bits (228), Expect = 3e-24
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
           +K + + D  VGK+ LL+ +T +TF  D   T+  +F    V VDG+ V L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDL 139
            +  L    YRGA   IL + +  R +++N+    W+ EL  Y+  P    +LVG K+D 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL--DTWLNELDTYSTNPDAVKMLVGNKIDK 118

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 92.0 bits (228), Expect = 6e-24
 Identities = 58/134 (43%), Positives = 78/134 (58%), Gaps = 19/134 (14%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDY------VPTVF--DNF--------SANVMVD 66
           IKCV V D AVGKT L+ +   N   T Y      VPTV+  D +         +  +VD
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 67  GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP 126
           G +V+L LWDT G  D+++ R  +Y  +DV +L FS+ S  S  N+ K  W PE+RH+ P
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNV-KTMWYPEIRHFCP 119

Query: 127 SVPIVLVGTKLDLR 140
            VP++LVG KLDLR
Sbjct: 120 RVPVILVGCKLDLR 133

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 90.5 bits (225), Expect = 9e-24
 Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 4/122 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+TV L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRK 141
           +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL  
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDLTD 121

Query: 142 DR 143
            +
Sbjct: 122 KK 123

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 90.2 bits (224), Expect = 1e-23
 Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V  G VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRK 141
           + +R    R  + F+  F++ SR S+E+I   ++ +  ++  +  VP+VLVG K DL  
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA 120

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 89.5 bits (223), Expect = 2e-23
 Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K V + D  VGK+ LL  +T N F  D   T+   F+   + +DG+T+   +WDTAGQE 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLRK 141
           Y  +    YRGA   +L + +  + ++EN+   +W+ ELR +A S + I+LVG K DLR 
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVE--RWLKELRDHADSNIVIMLVGNKSDLRH 122

Query: 142 DRQ 144
            R 
Sbjct: 123 LRA 125

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 87.5 bits (217), Expect = 1e-22
 Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 33  VGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQEDYNRLRPLSY 91
            GK+CLL  +  N F  D   T+   F + V+ V G++V L +WDTAGQE +  +    Y
Sbjct: 11  TGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYY 70

Query: 92  RGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQ 144
           RGA   +L + + SR S+  ++   W+ + R  A P + I+LVG K DL  DR+
Sbjct: 71  RGAAGALLVYDITSRESFNALT--NWLTDARTLASPDIVIILVGNKKDLEDDRE 122

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 87.2 bits (216), Expect = 2e-22
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWD 76
             +  +K + + DG VGK+ L+  Y  N F T    T+   F + ++ VDG  V L +WD
Sbjct: 1   GKSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWD 60

Query: 77  TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIV 131
           TAGQE +  LR   YRG+D  +L FS+    S++N+S   W  E  +YA      S P V
Sbjct: 61  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFV 118

Query: 132 LVGTKLDLRKDRQFHLD 148
           ++G K+D+  +RQ   +
Sbjct: 119 ILGNKIDI-PERQVSTE 134

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 86.6 bits (215), Expect = 3e-22
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGK+CLL+ ++ ++F   ++ T+  +F    + +DG+ + L +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLR 140
            +  +    YRGA   IL + +    S+ENI  K W+  +  H +  V  +LVG K D+ 
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENI--KNWMRNIDEHASEDVERMLVGNKCDME 121

Query: 141 KDRQ 144
           + R 
Sbjct: 122 EKRV 125

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 86.1 bits (213), Expect = 1e-21
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 6/125 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V + DG VGKT L I    N F   Y PT+ D++   V+VDG+   L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR----HYAPSVPIVLVGTKLDL 139
             LR    R  + FIL +S+ SR ++E +  +++  +++      A  VPI++VG K D 
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERV--ERFREQIQRVKDESAADVPIMIVGNKCDK 118

Query: 140 RKDRQ 144
             +R+
Sbjct: 119 VYERE 123

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 85.3 bits (211), Expect = 2e-21
 Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V  G VGK+ L I +  N F  +Y PT+ D++    ++D  T  L + DTAGQE+Y
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY 66

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENI-SKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           + +R    R    F+  +S+ SR S+E I S ++ +  ++     VP++LVG K DL  +
Sbjct: 67  SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE 125

Query: 143 RQ 144
           RQ
Sbjct: 126 RQ 127

Length = 189

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 84.0 bits (208), Expect = 3e-21
 Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE 81
             K V V  G VGK+ L I +  + F TDY PT+ D+++    +DG+   L + DTAGQE
Sbjct: 2   TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQE 61

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLR 140
           +++ +R    R  + F+L FS+  R S+E +  K     LR       P++LVG K DL 
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 141 KDRQ 144
             RQ
Sbjct: 121 HQRQ 124

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 82.9 bits (205), Expect = 7e-21
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKD 142
             +R   +R  + F+L FS+    S+  ++ +     LR     +VP++LVG K DL   
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALA-EFREQILRVKEDDNVPLLLVGNKCDLEDK 120

Query: 143 RQ 144
           RQ
Sbjct: 121 RQ 122

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 82.9 bits (205), Expect = 1e-20
 Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGKTC++  +   TF      T+  +F+   + + G+ V L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK 141
           +  +    YR A+  I+A+ +  R S+E++    W+ E+  Y A +V ++L+G K DL +
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVP--HWIEEVEKYGASNVVLLLIGNKCDLEE 122

Query: 142 DRQ 144
            R+
Sbjct: 123 QRE 125

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 83.4 bits (206), Expect = 1e-20
 Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
           +K V +   +VGKT L+  Y  + F    Y  T+   F A  M V  R V LG+WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           E Y  +  + YRGA   I+ + L    S+E    K WV EL++      I L GTK DL
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA--KFWVKELQNLEEHCKIYLCGTKSDL 117

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 7/117 (5%)

Query: 33  VGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRP 88
           VGK+ L + +    F  +Y P +   +S  V +DG  V+L + DT GQ+      +  R 
Sbjct: 10  VGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQNEDPESLERS 69

Query: 89  LSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
           L  R AD F+L +S+  R S++ +S+  + + E++     +P++LVG K DL   RQ
Sbjct: 70  L--RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADLLHSRQ 124

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +  N F   Y PT+ D++   V +DGR  +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY------APSVPIVLVGTKL 137
             +R L  +    F+L +S+ S  S   +       ELR        + +VP+VLVG K 
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELG------ELREQVLRIKDSDNVPMVLVGNKA 116

Query: 138 DLRKDRQ 144
           DL  DRQ
Sbjct: 117 DLEDDRQ 123

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 81.6 bits (201), Expect = 3e-20
 Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 4/117 (3%)

Query: 30  DGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQEDYNRLRP 88
           D  VGKTCLL  +T N F + ++ T+  +F    + VDG  V + +WDTAGQE Y  +  
Sbjct: 8   DSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITK 67

Query: 89  LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQ 144
             YR A    L + + S  SY++I   KWV ++  YAP  V  +L+G K D  + RQ
Sbjct: 68  QYYRRAQGIFLVYDISSERSYQHI--MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 81.7 bits (202), Expect = 3e-20
 Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL+ +T   F   +  T+   F A ++ +DG+ + L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           +  +    YRGA   +L + +  R ++ +++   W+ + R ++  ++ I+L+G K DL  
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLT--SWLEDARQHSNSNMTIMLIGNKCDLES 123

Query: 142 DRQ 144
            R+
Sbjct: 124 RRE 126

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 81.1 bits (200), Expect = 5e-20
 Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ + + +  ++FP  + PT+ D +     +D     L + DTAGQ ++
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQAEF 63

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R    R  + FI+ +S+  R S++  S+ K+ +  +R     +P+VLVG K+DL + 
Sbjct: 64  TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNKVDLEQQ 122

Query: 143 RQ 144
           RQ
Sbjct: 123 RQ 124

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 81.0 bits (200), Expect = 7e-20
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 15/135 (11%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV---------DGRT--VN 71
           IK + + D  VGKT  L  YT N F   ++ TV  +F    +V          G+   V+
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 72  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRH--YAPSVP 129
           L LWDTAGQE +  L    +R A  F+L F L S  S+ N+  + W+ +L+   Y  +  
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV--RNWMSQLQAHAYCENPD 122

Query: 130 IVLVGTKLDLRKDRQ 144
           IVL+G K DL   R+
Sbjct: 123 IVLIGNKADLPDQRE 137

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGKT L+  Y    F   Y  T+  D  +  V VD R V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKL 137
           +  L    YRGAD  +L + + +  S+E++    W  E    A      + P V++G K+
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESL--DSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 138 DLRKDRQ 144
           DL + RQ
Sbjct: 120 DLEEKRQ 126

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 78.9 bits (195), Expect = 3e-19
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 13/141 (9%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-----FDNFSANVMVDGRTVNLGLWDT 77
            K V V DG  GKT  +  +    F   YV T+       +F  N       +   +WDT
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGK----IRFNVWDT 56

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQE +  LR   Y      I+ F + SR +Y+N+    W  +L     ++PIVL G K+
Sbjct: 57  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV--PNWHRDLVRVCENIPIVLCGNKV 114

Query: 138 DL--RKDRQFHLDYPGAYTIS 156
           D+  RK +   + +     + 
Sbjct: 115 DIKDRKVKPKQITFHRKKNLQ 135

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 79.1 bits (195), Expect = 4e-19
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 24  KCVTVRDGAVGKTCLLISY-TGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQE 81
           K + V D  VGKTCLL+ +  G      ++ TV   F+  V+ VDG  V L +WDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLR 140
            +  +    YR A   +L + + ++ S++NI  + W+ E+  YA S V I+L+G K D+ 
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNI--RAWLTEILEYAQSDVVIMLLGNKADMS 119

Query: 141 KDRQ 144
            +R 
Sbjct: 120 GERV 123

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 79.4 bits (196), Expect = 5e-19
 Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 6/119 (5%)

Query: 30  DGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANV-MVDGRTVNLGLWDTAGQEDYNRLR 87
           D  VGK+ LL  +T   F     PTV  D FS  + +  G  + L LWDTAGQE +  + 
Sbjct: 10  DSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT 69

Query: 88  PLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPI-VLVGTKLDLRKDRQ 144
              YR +   +L F + +R S+E++    W+ E R H  P  P+ +LVG K DL   RQ
Sbjct: 70  RSYYRNSVGVLLVFDITNRESFEHV--HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ 126

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 78.3 bits (193), Expect = 5e-19
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +   TF   Y PT+ D +   + VD     L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R L  +    FI+ +SL+++ ++++I   +  +  ++ Y   VPI+LVG K+DL  +
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKVDLESE 121

Query: 143 RQ 144
           R+
Sbjct: 122 RE 123

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 78.1 bits (193), Expect = 8e-19
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 32  AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
           +VGK+ L + +    F   Y PT+ + FS  +   G+  +L + DTAGQ++Y+ L P  Y
Sbjct: 11  SVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEYSIL-PQKY 69

Query: 92  R-GADVFILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRKDRQ 144
             G   +IL +S+ SR S+E + K  +   L      SVPIVLVG K DL  +RQ
Sbjct: 70  SIGIHGYILVYSVTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHMERQ 123

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 78.6 bits (194), Expect = 1e-18
 Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV-----MVDGRTVNLGLWDT 77
            K + V DG VGKT  +  +    F   Y+PT+       V       +   +   +WDT
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTL----GVEVHPLKFYTNCGPICFNVWDT 65

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQE +  LR   Y      I+ F + SR +Y+N+    W  ++     ++PIVLVG K+
Sbjct: 66  AGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP--NWHRDIVRVCENIPIVLVGNKV 123

Query: 138 DLRKDRQ 144
           D+ KDRQ
Sbjct: 124 DV-KDRQ 129

Length = 215

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 76.5 bits (188), Expect = 3e-18
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQED 82
           K V + +  VGKTCL+  +T   FP     T+  +F    V + G  + L +WDTAGQE 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLRK 141
           +  +    YR A+  IL + +    S+  +   +W+ E+  YA + V  +LVG K+DL +
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLP--EWLREIEQYANNKVITILVGNKIDLAE 126

Query: 142 DRQ 144
            R+
Sbjct: 127 RRE 129

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 75.3 bits (185), Expect = 9e-18
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 5/138 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K + V D +VGKTCL+  +  + F  +Y  T+  +F      V G   +L LWDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP-SVPIVLVGTKLDLR 140
           +  +    YRGA   I+ F L    S E+   ++W+ + L+   P SV + LVGTK DL 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEH--TRQWLEDALKENDPSSVLLFLVGTKKDLS 119

Query: 141 KDRQFHLDYPGAYTISTE 158
              Q+ L    A  ++ E
Sbjct: 120 SPAQYALMEQDAIKLARE 137

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 74.9 bits (184), Expect = 1e-17
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-----NVMVDGRTVNLGLWDT 77
           +K + + D AVGK+ L+  +        Y P     ++      N   +G+T+ +  WDT
Sbjct: 1   VKIILLGDSAVGKSKLVERF----LMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQE +  +    Y  A   IL F +  + +Y+N+S  KW  ELR Y P +P ++V  K+
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFDVTRKITYKNLS--KWYEELREYRPEIPCIVVANKI 114

Query: 138 DL 139
           DL
Sbjct: 115 DL 116

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 76.1 bits (187), Expect = 1e-17
 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 4/122 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K V + D  VGK+ +L  +T N F  +   T+   F+   + V+G+TV   +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLRK 141
           Y  +    YRGA   +L + +  R +++N+  ++W+ ELR +A S + I++ G K DL  
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNV--QRWLRELRDHADSNIVIMMAGNKSDLNH 131

Query: 142 DR 143
            R
Sbjct: 132 LR 133

Length = 216

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGKTCL   +    FP     T+  +F    V +DG  + + LWDTAGQE 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 83  YNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDL 139
           + + +    YR     +  + + +  S+ ++    W+ E   ++    VP +LVG K DL
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSL--PSWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 140 RKDRQ 144
           R+  Q
Sbjct: 122 REQIQ 126

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 74.0 bits (182), Expect = 2e-17
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 30  DGAVGKTCLLISYTGNTF---PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL 86
            G VGK+ LL +  G            T  D       +D   V L L DT G +++  L
Sbjct: 5   RGGVGKSSLLNALLGGEVGEVSDVPGTTR-DPDVYVKELDKGKVKLVLVDTPGLDEFGGL 63

Query: 87  RP-----LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
                  L  RGAD+ +L      R S E+    K +   R     +PI+LVG K+DL +
Sbjct: 64  GREELARLLLRGADLILLVVDSTDRESEEDA---KLLILRRLRKEGIPIILVGNKIDLLE 120

Query: 142 DRQ 144
           +R+
Sbjct: 121 ERE 123

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 74.6 bits (183), Expect = 4e-17
 Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL+ +T   F   +  T+   F A  + +D + + L +WDTAGQE 
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           +  +    YRGA   +L + +  R ++ +++   W+ + R +A  ++ I+L+G K DL  
Sbjct: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLA--SWLEDARQHANANMTIMLIGNKCDLAH 125

Query: 142 DR 143
            R
Sbjct: 126 RR 127

Length = 210

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 72.1 bits (177), Expect = 4e-17
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K V + D   GK+ LL    G  FP + +    D  + + + VDG T  L +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKL 137
                 +  + AD  +L + L  R S   +S+   W+P LR     +P++LVG KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 73.4 bits (180), Expect = 4e-17
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +    F   Y PT+ D++   + VD +   L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R L  +    F L +S+ ++ S+ ++   ++ +  ++     VP++LVG K DL  +
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDE 121

Query: 143 R 143
           R
Sbjct: 122 R 122

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 73.7 bits (181), Expect = 6e-17
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K + + D  VGK+ LL+ +  NTF   Y+ T+  +F    + ++G  V L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD 138
           +  +    YRG    I+ + + +  S+ N+  K+W+ E+      V  VLVG K D
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV--KRWLQEIEQNCDDVCKVLVGNKND 121

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 72.5 bits (178), Expect = 3e-16
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-----FDNFSANVMVDGRTVNLGLWDT 77
            K V V DG  GKT  +  +    F   Y PT+       +F  N    G+ +    WDT
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GK-IRFYCWDT 69

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQE +  LR   Y      I+ F + +R +Y+N+    W  +L     ++PIVL G K+
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKV 127

Query: 138 DLRKDRQ 144
           D+ K+RQ
Sbjct: 128 DV-KNRQ 133

Length = 219

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 70.2 bits (172), Expect = 7e-16
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +    F   Y PT+ D++   V VDG+   L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY------APSVPIVLVGTKL 137
             +R L  +    F+L +S+ ++ ++ ++       +LR           VP++LVG K 
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDL------QDLREQILRVKDTEDVPMILVGNKC 116

Query: 138 DLRKDR 143
           DL  +R
Sbjct: 117 DLEDER 122

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 69.9 bits (171), Expect = 1e-15
 Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K + + + +VGKT  L  Y  ++F + +V TV  +F    V  + + + L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y  +    YRGA  FIL + + +  S+  +  + W  +++ Y+  +  ++LVG K D+  
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESFNAV--QDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 142 DR 143
           +R
Sbjct: 121 ER 122

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 69.5 bits (170), Expect = 1e-15
 Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL  +T   F  D   T+   F   ++ V+G+ + L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           +  +    YRGA   ++ + +  R +Y ++S   W+ + R+   P+  I L+G K DL  
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIFLIGNKADLEA 121

Query: 142 DRQ 144
            R 
Sbjct: 122 QRD 124

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 10  SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGR 68
           SSS  ++     F K + + D  VGK+ LL+S+  ++   D  PT+  +F    + V G+
Sbjct: 3   SSSGQSSGYDLSF-KILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGK 60

Query: 69  TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSV 128
            + L +WDTAGQE +  L    YR A   IL + +  R ++ N+S   W  E+  Y+ + 
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLS-DVWGKEVELYSTNQ 119

Query: 129 PIV--LVGTKLDLRKDR 143
             V  LVG K+D   +R
Sbjct: 120 DCVKMLVGNKVDRESER 136

Length = 211

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 67.9 bits (166), Expect = 5e-15
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 9/128 (7%)

Query: 24  KCVTVRDGAVGKT--CLLISYTGNTFPTDYVPTVFDNF---SANVMVDGRTVNLGLWDTA 78
           +C  V D AVGK+    +    G TF  +Y  T   +    +  V     +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTK 136
           GQE ++ +    +    V  + + + +  S+ N S  +W+  +R ++     P VLVG K
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCS--RWINRVRTHSHGLHTPGVLVGNK 119

Query: 137 LDLRKDRQ 144
            DL   R+
Sbjct: 120 CDLTDRRE 127

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 9/128 (7%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
           IK +++ +  VGK+C++  Y    F + Y+PT+  D     V V  + V +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY------APSVPIVLVGT 135
           +Y  +R   Y+     +L + +  R S+E +    W+ E++          ++ +V+   
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALD--SWLKEMKQEGGPHGNMENIVVVVCAN 118

Query: 136 KLDLRKDR 143
           K+DL K R
Sbjct: 119 KIDLTKHR 126

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQ 80
            +K + V D  VGK  +L S    +  + Y   +  D  +  +++DGR V L LWDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             +  +     RGA   IL + + +R S++ I +  W+ E+  +AP VP +LVG +L L 
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDR--WIKEIDEHAPGVPKILVGNRLHLA 123

Query: 141 KDRQFHLDYPGAY 153
             RQ   +   AY
Sbjct: 124 FKRQVATEQAQAY 136

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 65.9 bits (161), Expect = 5e-14
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
           +K   + D  +GKT L++ Y    F  +Y+ T+  NF    + + G  +   +WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           ++  + PL  + A   +  F L  + +  +I  K+W  + R +  +   +LVGTK DL
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSI--KEWYRQARGFNKTAIPILVGTKYDL 116

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 65.0 bits (158), Expect = 1e-13
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 33  VGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
           VGKT L+  +T +TF      TV  +F    V + G+ + L +WDTAGQE +N +    Y
Sbjct: 11  VGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 70

Query: 92  RGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLRKDRQ 144
           R A   IL + +  + +++++   KW+  +  YA     ++LVG KLD   DR+
Sbjct: 71  RSAKGIILVYDITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDCETDRE 122

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV--DGRTVNLGLWDTAGQE 81
           K + + D  VGKT ++  Y    F   Y  T+  +F+  V+       V L LWD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR---HYAP--SVPIVLVGTK 136
            +  +  + Y+GA   I+ F +    ++E +   KW  +L           +P +L+  K
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVL--KWKADLDSKVTLPNGEPIPALLLANK 119

Query: 137 LDLRKDR 143
            DL+K+R
Sbjct: 120 CDLKKER 126

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV---FDNFSANVMVDGRTVNLGLWDTAG 79
            K + V  G VGKT L     G  F  D   T      ++      + + + L +WD  G
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPA-PERKKIRLNVWDFGG 60

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           QE Y+           +++L F L  R   E      W+ +++ +    P++LVGT +D 
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDL--RTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDE 118

Query: 140 RKDRQ 144
             D  
Sbjct: 119 SCDED 123

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 63.1 bits (153), Expect = 6e-13
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 28  VRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQEDYNRL 86
           V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 87  RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
           R   Y      I+ F + +R +Y+N+    W  +L     ++PIVL G K+D+ KDR+
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDV-KDRK 115

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 33  VGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR 92
           VGKT L+  +  +TF   +  TV +  S    V G  V + + DT+G   +  +R LS +
Sbjct: 10  VGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSFPAMRKLSIQ 69

Query: 93  GADVFILAFSLISRPSYENI-SKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
             D F L +S+    S+E +   ++ + E++     VPIV+VG K+D   +RQ
Sbjct: 70  NGDAFALVYSVDDPESFEEVKRLREEILEVKEDK-FVPIVVVGNKIDSLAERQ 121

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           + V    G VGK+ L++ +   TF   Y+PT+ D +   +        L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 84  NRLRPLSYRGADVFILAFSLISR-------PSYENISKKKWVPELRHYAPSVPIVLVGTK 136
             ++ LS      FIL +S+ S+       P YE I + K      +    +PI+LVG K
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIK-----GNNLEKIPIMLVGNK 117

Query: 137 LDLRKDRQ 144
            D    R+
Sbjct: 118 CDESPSRE 125

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 8/120 (6%)

Query: 33  VGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR 92
           VGKT ++  + G  F   Y PT+ D       + G    L + DT+G   +  +R LS  
Sbjct: 11  VGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSIL 70

Query: 93  GADVFILAFSLISRPSYE-------NISKKKWVPELR-HYAPSVPIVLVGTKLDLRKDRQ 144
             DVFIL FSL +R S+E        I + K   + +      +P+V+ G K D    R+
Sbjct: 71  TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE 130

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 13/127 (10%)

Query: 24  KCVTVRDGAVGKTCL-LISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           + V + D  VGK+ L  I   G    + Y  +  D +   V VDG    L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR------HYAPSVPIVLVGTK 136
              L     +  D +++ +S+  R S+E         ELR        A  +PI+LVG K
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEK------ASELRIQLRRARQAEDIPIILVGNK 115

Query: 137 LDLRKDR 143
            DL + R
Sbjct: 116 SDLVRSR 122

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 57.1 bits (137), Expect = 9e-11
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 45  NTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 103
           +TF  +Y  T+  D  S  + +D   V L LWDTAGQE +  L P   R +   I+ + +
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 104 ISRPSYENISKKKWVPE-LRHYAPSVPIVLVGTKLDLRKDRQ 144
            +R S+EN +  KW+ + L      V I LVG K DL   R+
Sbjct: 63  TNRQSFENTT--KWIQDILNERGKDVIIALVGNKTDLGDLRK 102

Length = 176

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           ++ V + D  VGK+ L++S     FP + VP V    +    V    V   + DT+ +  
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
                    R A+V  L +S+    + E I  K W+P +R     VPI+LVG K DLR  
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTK-WLPLIRRLGVKVPIILVGNKSDLRDG 120

Query: 143 RQ 144
             
Sbjct: 121 SS 122

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGR-TVNLGLWDTAGQ 80
           IK V + DGA GKT L+  +    F   Y  T+  D FS  + + G   V L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVP-IVLVGTKLD 138
           +   ++      GA    L + + +  S+EN+      V ++   + + P +VLVG K D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 139 LRKDRQ 144
           L  +RQ
Sbjct: 121 LEHNRQ 126

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           +K V + D  VGKT LL  Y    F  D V TV   F    +      N+ +WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAF---YLKQWGPYNISIWDTAGREQ 56

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           ++ L  +  RGA   IL + + +  S E + + +++             +VG KLDL ++
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 143 RQFHLDYPGA 152
                    A
Sbjct: 116 GALAGQEKDA 125

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%)

Query: 33  VGKTCLLISYTGNTFPTDYVPTVFDN-FSANVMVDGRTVNLGLWD---------TAGQED 82
           VGKT ++  +    FP +Y+PT     +   V++ GR  +L + D         TAGQE 
Sbjct: 11  VGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQE- 69

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHY-APSVPIVLVGTKLDLR 140
           +   R    R +  FIL + + S  S+  +   ++ + E R       PIV+VG K D +
Sbjct: 70  WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129

Query: 141 KDR 143
           + R
Sbjct: 130 RHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 25/117 (21%)

Query: 34  GKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPL--SY 91
           GKT L+       F  D +PTV  N      V    V + +WD  GQ    R R +   Y
Sbjct: 11  GKTTLVNVIASGQFSEDTIPTVGFNMR---KVTKGNVTIKVWDLGGQP---RFRSMWERY 64

Query: 92  -RGAD--VFIL------AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
            RG +  V+++         +     ++ + K    P L      +P++++G K DL
Sbjct: 65  CRGVNAIVYVVDAADREKLEVAKNELHDLLEK----PSLEG----IPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTA 78
               C  +     GK+ LL ++ G +F    Y PT+   ++ N V V G+   L L +  
Sbjct: 3   NVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVG 62

Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAP---SVPIVLVG 134
             E+   L        DV  L +   S P S+   +      E+         +P + V 
Sbjct: 63  EDEEAILLNDAELAACDVACLVYD-SSDPNSFSYCA------EVYKKYFMLGEIPCLFVA 115

Query: 135 TKLDLRKDRQFHLDYPGAYT 154
            K DL + +Q     P  + 
Sbjct: 116 AKADLDEQQQRAEVQPDEFC 135

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.98
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.98
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.98
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.98
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.98
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.98
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.97
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
KOG0394	210	consensus Ras-related GTPase [General function pre	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.96
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.96
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.96
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.96
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.96
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.96
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.96
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.96
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.96
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.96
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
PLN03110	216	Rab GTPase; Provisional	99.95
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.95
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.95
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.95
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.95
PLN03108	210	Rab family protein; Provisional	99.95
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.95
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.95
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.95
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.95
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.95
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.95
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.95
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.94
PLN03118	211	Rab family protein; Provisional	99.94
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.94
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.94
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.94
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.94
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.94
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.94
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.93
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.93
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.93
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.93
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.93
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.93
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.93
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.92
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.92
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.92
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.92
PLN00223	181	ADP-ribosylation factor; Provisional	99.92
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.92
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.92
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.92
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.92
PTZ00133	182	ADP-ribosylation factor; Provisional	99.92
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.91
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.91
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.91
COG1100	219	GTPase SAR1 and related small G proteins [General	99.9
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.9
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.9
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.9
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.89
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.89
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.89
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.89
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.89
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.88
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.88
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.87
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.87
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.86
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.85
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.84
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.83
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.83
PTZ00099	176	rab6; Provisional	99.82
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.82
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.82
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.81
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.81
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.81
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.8
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.79
KOG1673	205	consensus Ras GTPases [General function prediction	99.79
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.79
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.79
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.77
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.77
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.76
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.76
PRK12299	335	obgE GTPase CgtA; Reviewed	99.75
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.75
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.75
PRK04213	201	GTP-binding protein; Provisional	99.75
PRK03003	472	GTP-binding protein Der; Reviewed	99.75
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.75
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.74
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.74
PRK15494	339	era GTPase Era; Provisional	99.74
PRK03003	472	GTP-binding protein Der; Reviewed	99.73
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.73
PRK00093	435	GTP-binding protein Der; Reviewed	99.72
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.72
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.72
cd00881	189	GTP_translation_factor GTP translation factor fami	99.71
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.71
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.7
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.7
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.7
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.7
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.69
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.69
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.69
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.69
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.68
PRK11058	426	GTPase HflX; Provisional	99.68
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.68
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.67
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.67
PRK05306	787	infB translation initiation factor IF-2; Validated	99.66
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.66
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.66
CHL00189	742	infB translation initiation factor 2; Provisional	99.66
PRK12297	424	obgE GTPase CgtA; Reviewed	99.66
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.65
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.65
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.65
COG2229	187	Predicted GTPase [General function prediction only	99.65
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.65
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.65
PRK00089	292	era GTPase Era; Reviewed	99.64
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.64
PRK12296	500	obgE GTPase CgtA; Reviewed	99.63
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.63
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.63
PRK10218	607	GTP-binding protein; Provisional	99.63
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.63
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.62
PRK05433	600	GTP-binding protein LepA; Provisional	99.62
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.61
COG1160	444	Predicted GTPases [General function prediction onl	99.61
PRK12298	390	obgE GTPase CgtA; Reviewed	99.61
PRK00093	435	GTP-binding protein Der; Reviewed	99.61
PRK12317	425	elongation factor 1-alpha; Reviewed	99.6
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.59
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.59
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.59
PRK04004	586	translation initiation factor IF-2; Validated	99.59
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.58
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.58
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.58
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.57
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.57
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.57
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.57
PRK13351	687	elongation factor G; Reviewed	99.55
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.55
COG1159	298	Era GTPase [General function prediction only]	99.55
COG0486	454	ThdF Predicted GTPase [General function prediction	99.54
COG0218	200	Predicted GTPase [General function prediction only	99.54
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.54
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.54
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.53
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.53
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.52
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.52
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.5
COG1160	444	Predicted GTPases [General function prediction onl	99.48
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.47
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.46
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.46
COG1084	346	Predicted GTPase [General function prediction only	99.45
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.44
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.43
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.42
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.41
KOG0090	238	consensus Signal recognition particle receptor, be	99.4
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.4
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.38
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.38
PRK12736	394	elongation factor Tu; Reviewed	99.38
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.37
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.37
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.37
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.37
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.36
CHL00071	409	tufA elongation factor Tu	99.36
PRK12735	396	elongation factor Tu; Reviewed	99.36
PRK12739	691	elongation factor G; Reviewed	99.35
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.34
PLN03126	478	Elongation factor Tu; Provisional	99.34
COG3596	296	Predicted GTPase [General function prediction only	99.33
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.31
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.28
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.27
PRK00007	693	elongation factor G; Reviewed	99.27
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.26
PLN03127	447	Elongation factor Tu; Provisional	99.26
PRK00049	396	elongation factor Tu; Reviewed	99.24
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.23
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.22
PLN00043	447	elongation factor 1-alpha; Provisional	99.21
PRK12740	668	elongation factor G; Reviewed	99.21
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.21
PTZ00416	836	elongation factor 2; Provisional	99.2
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.19
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.16
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.16
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.15
COG1163	365	DRG Predicted GTPase [General function prediction	99.14
PTZ00141	446	elongation factor 1- alpha; Provisional	99.14
PRK07560	731	elongation factor EF-2; Reviewed	99.11
COG0536	369	Obg Predicted GTPase [General function prediction	99.09
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.08
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.08
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.05
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.05
COG2262	411	HflX GTPases [General function prediction only]	99.04
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.04
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.03
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.02
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.01
PRK09866	741	hypothetical protein; Provisional	98.99
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.99
KOG1145	683	consensus Mitochondrial translation initiation fac	98.98
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.96
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.96
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.93
PRK09602	396	translation-associated GTPase; Reviewed	98.91
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.87
PRK14845	1049	translation initiation factor IF-2; Provisional	98.84
PRK13768	253	GTPase; Provisional	98.83
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.83
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.82
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.81
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.8
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.77
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.74
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.73
PTZ00258	390	GTP-binding protein; Provisional	98.73
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.72
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.71
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.7
PRK09601	364	GTP-binding protein YchF; Reviewed	98.69
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.69
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.69
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.68
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.68
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.65
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.63
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.62
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.62
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.59
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.57
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.56
KOG2486	320	consensus Predicted GTPase [General function predi	98.53
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.52
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.52
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.5
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.49
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.48
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.38
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.37
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.37
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.37
COG1161	322	Predicted GTPases [General function prediction onl	98.33
PRK12288	347	GTPase RsgA; Reviewed	98.31
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.18
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.18
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.18
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.16
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.16
PRK12289	352	GTPase RsgA; Reviewed	98.12
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.1
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.08
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.08
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.07
COG1162	301	Predicted GTPases [General function prediction onl	98.04
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.02
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.01
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.01
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.01
PRK00098	298	GTPase RsgA; Reviewed	97.98
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.9
PRK13796	365	GTPase YqeH; Provisional	97.87
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.82
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.82
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	97.8
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.8
KOG0467	887	consensus Translation elongation factor 2/ribosome	97.79
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.78
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.77
cd03112	158	CobW_like The function of this protein family is u	97.76
PRK13695	174	putative NTPase; Provisional	97.73
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.73
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.72
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	97.67
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.67
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.65
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.64
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.61
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.58
KOG0410	410	consensus Predicted GTP binding protein [General f	97.56
PRK08118	167	topology modulation protein; Reviewed	97.55
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.53
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.52
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.52
PRK12289	352	GTPase RsgA; Reviewed	97.5
PRK07261	171	topology modulation protein; Provisional	97.5
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.49
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.48
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.47
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.46
PRK00098	298	GTPase RsgA; Reviewed	97.45
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.45
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.41
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.41
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.35
PRK14738	206	gmk guanylate kinase; Provisional	97.35
COG3523	1188	IcmF Type VI protein secretion system component Va	97.32
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.32
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.32
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.29
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.28
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.28
smart00382	148	AAA ATPases associated with a variety of cellular	97.26
PRK06217	183	hypothetical protein; Validated	97.25
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.24
PRK14737	186	gmk guanylate kinase; Provisional	97.24
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.23
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.23
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.21
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.21
PF00004	132	AAA: ATPase family associated with various cellula	97.2
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.19
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.18
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.16
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.16
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.15
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.15
KOG1143	591	consensus Predicted translation elongation factor	97.14
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.13
PRK14530	215	adenylate kinase; Provisional	97.12
PRK03839	180	putative kinase; Provisional	97.11
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.11
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.11
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.11
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.1
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.08
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.08
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.08
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.06
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.06
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.06
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.06
PLN02200	234	adenylate kinase family protein	97.04
PRK14531	183	adenylate kinase; Provisional	97.04
PRK13949	169	shikimate kinase; Provisional	97.02
PRK12288	347	GTPase RsgA; Reviewed	97.01
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.01
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.01
PRK00300	205	gmk guanylate kinase; Provisional	97.0
PRK14532	188	adenylate kinase; Provisional	96.99
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.97
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.97
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.96
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.96
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.94
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.94
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.94
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.94
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.93
PRK01889	356	GTPase RsgA; Reviewed	96.93
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.93
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.92
PTZ00088	229	adenylate kinase 1; Provisional	96.92
PRK02496	184	adk adenylate kinase; Provisional	96.92
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.92
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.91
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	96.91
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.91
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.91
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.9
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.9
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.9
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.9
PLN02459	261	probable adenylate kinase	96.89
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.89
PRK05480	209	uridine/cytidine kinase; Provisional	96.89
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.88
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.88
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.87
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.87
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.87
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.87
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.87
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.87
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.87
KOG3929	363	consensus Uncharacterized conserved protein [Funct	96.86
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.86
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.86
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.86
PRK00625	173	shikimate kinase; Provisional	96.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.85
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.85
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.85
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.85
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.84
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.84
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.84
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.83
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.83
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.82
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.81
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.81
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.81
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.8
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.8
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.8
PRK08233	182	hypothetical protein; Provisional	96.8
PRK05057	172	aroK shikimate kinase I; Reviewed	96.8
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.8
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.79
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.79
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.78
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.78
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.78
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.78
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.78
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.78
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.77
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.77
PF05729	166	NACHT: NACHT domain	96.77
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.76
COG0410	237	LivF ABC-type branched-chain amino acid transport	96.76
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.75
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.75
PRK10908	222	cell division protein FtsE; Provisional	96.75
cd03111	106	CpaE_like This protein family consists of proteins	96.75

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-39  Score=222.60  Aligned_cols=137  Identities=34%  Similarity=0.683  Sum_probs=129.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+|+|++|||||||+.||..+.|.+.|..|++..+. +.+.+++..++++||||+||++|+.+..+||+++|+
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            4567899999999999999999999999999999999999985 488899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS  156 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~  156 (159)
                      +|+|||+++.+||+.+.  .|+.++.++. +++|.+|||||||+.++|+|+.++++.||..
T Consensus        85 ii~vyDiT~~~SF~~v~--~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~  143 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVK--RWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE  143 (205)
T ss_pred             EEEEEEcccHHHhhhHH--HHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHh
Confidence            99999999999999999  9999999998 5789999999999999999999999888753

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-36  Score=205.93  Aligned_cols=136  Identities=29%  Similarity=0.569  Sum_probs=129.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....+|++++|+.|||||+|+.||+...|.+.+..|++..+ ...+.+++..+++++||++|++.|.+....||+.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45678999999999999999999999999999999999999 55889999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS  156 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~  156 (159)
                      ++|||++.+++|+.+.  .|++.++++. ++..|+|+|||+||...|.|+.||+++||.+
T Consensus        83 lLVydit~r~sF~hL~--~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e  140 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLT--SWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFARE  140 (216)
T ss_pred             EEEEEccchhhHHHHH--HHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHH
Confidence            9999999999999999  9999999995 8999999999999999999999999999864

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-34  Score=197.85  Aligned_cols=135  Identities=36%  Similarity=0.561  Sum_probs=125.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .+.+.+|++++|+.+||||||++||+.++|...|.+|++..| .+.+.+.+..+.+++|||.|||+|+.+...|++++.+
T Consensus        18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v   97 (221)
T KOG0094|consen   18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   97 (221)
T ss_pred             ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence            445669999999999999999999999999999999999888 6688889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|+|||+++..+|....  .|++.+.....  ++-|+|||||.||.+.|+|+.+|++.-|
T Consensus        98 aviVyDit~~~Sfe~t~--kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA  155 (221)
T KOG0094|consen   98 AVIVYDITDRNSFENTS--KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA  155 (221)
T ss_pred             EEEEEeccccchHHHHH--HHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH
Confidence            99999999999999999  99999998763  4778999999999999999999987643

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-34  Score=197.44  Aligned_cols=136  Identities=37%  Similarity=0.674  Sum_probs=127.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+|++++|.++||||||+.|+..+.|.+...+|++--| .+.+.+++..++|.||||+|+++|.++-+.||++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4678999999999999999999999999988889998877 678888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIST  157 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~~  157 (159)
                      +|||+++.+||..++  .|+.++.+.. +++-|.|||||+||.+.|+|..++++.||.++
T Consensus        83 vvYDit~~~SF~~aK--~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~  140 (200)
T KOG0092|consen   83 VVYDITDEESFEKAK--NWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQ  140 (200)
T ss_pred             EEEecccHHHHHHHH--HHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhc
Confidence            999999999999999  9999999887 46778889999999999999999999998764

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.9e-34  Score=199.40  Aligned_cols=137  Identities=32%  Similarity=0.616  Sum_probs=130.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      +....+||+++|+++||||+|+.+|..+.|...+..|++..+ .+.+..++..+.+++||+.||++|..+...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            667899999999999999999999999999999999999888 4588899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGAYTIS  156 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~~~~~  156 (159)
                      +++|||+++..+|+.+.  .|+..+.++.+ .+|++|||||+|+.++|+|+.+.++++|..
T Consensus        88 i~LvyDitne~Sfeni~--~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e  146 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIR--NWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALARE  146 (207)
T ss_pred             eEEEEEccchHHHHHHH--HHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHH
Confidence            99999999999999999  89999999985 999999999999999999999999998754

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=8.7e-33  Score=196.09  Aligned_cols=135  Identities=35%  Similarity=0.679  Sum_probs=122.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ...+||+++|++|||||||++++..+.|...|.||.+..+...+.+++..+.+++||++|++.|..++..++++++++|+
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            46789999999999999999999999999999999988887778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCcccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYTI  155 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~~  155 (159)
                      |||++++.+|..+.. .|+..+....++.|++|||||+||.+            ++.|+.++++.||-
T Consensus        83 vyDit~~~Sf~~~~~-~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~  149 (182)
T cd04172          83 CFDISRPETLDSVLK-KWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK  149 (182)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH
Confidence            999999999999843 99999998888999999999999975            35688888887763

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.9e-34  Score=189.80  Aligned_cols=135  Identities=32%  Similarity=0.625  Sum_probs=128.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+|.+++|++|+|||||+.+|..+.|..+|..|++..+. .++.+++..++++|||+.|++.|+.+...|++..+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            4568899999999999999999999999999999999884 488899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCcccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTIST  157 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~~  157 (159)
                      |||+++.++|.+..  +|++++...++.+|-+|||||.|.++.|.|..+++++||.+.
T Consensus        87 VYDVTn~ESF~Nv~--rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~m  142 (198)
T KOG0079|consen   87 VYDVTNGESFNNVK--RWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQM  142 (198)
T ss_pred             EEECcchhhhHhHH--HHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhc
Confidence            99999999999999  999999999999999999999999999999999999999764

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.8e-32  Score=193.48  Aligned_cols=131  Identities=80%  Similarity=1.289  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+.++..+.|...|.+|.+..+...+.+++..+++.+||++|++.|..++..++++++++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            69999999999999999999999999999999988887777788889999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc----------cccccCCCccc
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR----------QFHLDYPGAYT  154 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r----------~v~~~~~~~~~  154 (159)
                      ++++++|..+.. .|+..+....+++|++|||||+||.+++          .|+.++++.||
T Consensus        82 ~~~~~Sf~~~~~-~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a  142 (176)
T cd04133          82 LISRASYENVLK-KWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR  142 (176)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence            999999999843 8999998877899999999999997765          36666665554

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.3e-32  Score=193.28  Aligned_cols=132  Identities=34%  Similarity=0.678  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+++|..+.|...|.||.+..+...+.+++..+.+++||++|++.+..+...++++++++|+|||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd   81 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD   81 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence            69999999999999999999999999999999988887778889999999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCcccc
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYTI  155 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~~  155 (159)
                      ++++++|+.+.. .|+..+....++.|++|||||+||.+            .+.|+.+++++||-
T Consensus        82 it~~~Sf~~~~~-~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~  145 (178)
T cd04131          82 ISRPETLDSVLK-KWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK  145 (178)
T ss_pred             CCChhhHHHHHH-HHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence            999999999633 99999998888999999999999965            35688777777763

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=99.98  E-value=4.6e-32  Score=193.36  Aligned_cols=133  Identities=32%  Similarity=0.563  Sum_probs=121.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|..|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..++++++++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4569999999999999999999999999888888877666 345677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++++|..+.  .|++.+....+++|++|||||+||.+.|+++.++++.||
T Consensus        84 lVfD~t~~~Sf~~~~--~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a  137 (189)
T cd04121          84 LVYDITNRWSFDGID--RWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYA  137 (189)
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHH
Confidence            999999999999998  999999888789999999999999999999988887776

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01875 RhoG RhoG subfamily

Probab=99.98  E-value=6.1e-32  Score=193.09  Aligned_cols=121  Identities=66%  Similarity=1.131  Sum_probs=111.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||++++..+.|...|.||.+..+...+.+++..+.+++||++|++.+..++..++++++++|+||
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy   82 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF   82 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence            48999999999999999999999999989999998888766778888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      |++++++|+.+.. .|+..+....+++|++|||||+||.+.+
T Consensus        83 dit~~~Sf~~~~~-~w~~~i~~~~~~~piilvgNK~DL~~~~  123 (191)
T cd01875          83 SIASPSSYENVRH-KWHPEVCHHCPNVPILLVGTKKDLRNDA  123 (191)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence            9999999999964 6998888777789999999999997654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.7e-32  Score=190.79  Aligned_cols=139  Identities=36%  Similarity=0.575  Sum_probs=131.1

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 044772           16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA   94 (159)
Q Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   94 (159)
                      .......+||+++|+++||||=|+.||..++|.....+|++..+ ...+.++++.++.+||||.||++|+.+...|++.+
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            34667889999999999999999999999999999999999988 55888999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772           95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS  156 (159)
Q Consensus        95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~  156 (159)
                      .++++|||++.+.+|+.+.  +|+.+++.+. ++++|+|||||+||...|.|+.|+++.||..
T Consensus        88 vGAllVYDITr~~Tfenv~--rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~  148 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVE--RWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK  148 (222)
T ss_pred             ceeEEEEechhHHHHHHHH--HHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh
Confidence            9999999999999999998  9999999998 7999999999999999999999999999864

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.98  E-value=6.7e-32  Score=197.64  Aligned_cols=136  Identities=35%  Similarity=0.620  Sum_probs=122.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ....+||++||++|||||||+++|..+.|...|.||.+..+...+.+++..+.+++|||+|++.|..+...++++++++|
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            35678999999999999999999999999999999998888777888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCcccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYTI  155 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~~  155 (159)
                      +|||++++++|..+.. .|+..+....++.|++|||||+||.+            .++|+.++++.||-
T Consensus        90 lVyDit~~~Sf~~~~~-~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~  157 (232)
T cd04174          90 LCFDISRPETVDSALK-KWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK  157 (232)
T ss_pred             EEEECCChHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH
Confidence            9999999999998533 99999998878899999999999975            47788888877764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=2.7e-32  Score=184.08  Aligned_cols=137  Identities=31%  Similarity=0.562  Sum_probs=125.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||++||.+|||||||+.+|..+.|.+....|++..+. +.+.+++.++++-||||.|+++|+.+...||+.+.+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            3456799999999999999999999999998887778999884 577899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS  156 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~  156 (159)
                      +|+|||++.+++|..++  .|++++..|.  +++-.++||||+|.+..|.|+.+|+..||..
T Consensus        87 iIlVYDVT~Rdtf~kLd--~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~  146 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLD--IWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK  146 (209)
T ss_pred             eEEEEEccchhhHHhHH--HHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh
Confidence            99999999999999997  9999999987  4566699999999999999999999988753

>cd04120 Rab12 Rab12 subfamily

Probab=99.98  E-value=6.7e-32  Score=194.28  Aligned_cols=130  Identities=29%  Similarity=0.587  Sum_probs=117.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      ++|+++|++|||||||+++|..+.|...+.+|.+..+ ...+.+++..+.+++||++|++.|..++..|+++++++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3699999999999999999999999988899988666 456788888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++++|+.+.  .|+..+.... +++|++|||||+|+.+.|+++.++++.||
T Consensus        81 Dvtd~~Sf~~l~--~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a  132 (202)
T cd04120          81 DITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFA  132 (202)
T ss_pred             ECcCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence            999999999998  8999887765 58999999999999988999877765544

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=2.4e-31  Score=187.62  Aligned_cols=119  Identities=64%  Similarity=1.165  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+++|..+.|...|.||.+..+...+..++..+.+++||++|++.+...+..++++++++|+|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            79999999999999999999999998899999988887677788888999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++++++|..+.. .|+..+....+++|++|||||+|+.+.
T Consensus        82 ~~~~~s~~~~~~-~w~~~i~~~~~~~piilvgnK~Dl~~~  120 (175)
T cd01874          82 VVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence            999999999974 699998877778999999999999764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-31  Score=176.12  Aligned_cols=137  Identities=28%  Similarity=0.587  Sum_probs=124.9

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 044772           16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA   94 (159)
Q Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   94 (159)
                      .+.-....|++++|++.||||||+.++....|...+..|.+..++ +++.....++++++||+.|+|.++.....+++++
T Consensus        15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            344556679999999999999999999999999999999988884 4666677889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      .++|+|||+++.++|+.++  .|.-.|+.++ .++|+||||||||+.++|.|+.|.++.+|
T Consensus        95 mgfiLmyDitNeeSf~svq--dw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~  153 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQ--DWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLA  153 (193)
T ss_pred             ceEEEEEecCCHHHHHHHH--HHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHH
Confidence            9999999999999999999  9999999887 69999999999999999999999888765

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-31  Score=179.38  Aligned_cols=136  Identities=32%  Similarity=0.588  Sum_probs=126.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+|++++|+.|.|||+|+++|+.+++......|++..+ +..+.+.+..++++|||+.|+++|++..+.|++.+.+
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            345678999999999999999999999999999899999998 5577888999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      .++|||++++++|+.+.  .|+..++... +++.++++|||.||..+|+|+..|+..||-
T Consensus        85 AlLVYD~TsrdsfnaLt--nWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~Faq  142 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALT--NWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ  142 (214)
T ss_pred             eEEEEeccchhhHHHHH--HHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhc
Confidence            99999999999999999  9999999876 588899999999999999999999888763

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=8.3e-31  Score=184.35  Aligned_cols=131  Identities=27%  Similarity=0.490  Sum_probs=117.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||++|++.+..++..++..++++|+||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            47999999999999999999999999888899998877777788888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++.+|..+.  .|...+.+..  +++|++|||||+|+.+.++++.+++..+|
T Consensus        82 d~~~~~Sf~~~~--~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a  134 (172)
T cd04141          82 SVTDRHSFQEAS--EFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA  134 (172)
T ss_pred             ECCchhHHHHHH--HHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH
Confidence            999999999998  7877776643  57999999999999988989887776654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.8e-31  Score=176.81  Aligned_cols=138  Identities=32%  Similarity=0.596  Sum_probs=126.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+++|+.|+|||+|+.+|..+-|++.-..|++..+ .+++.++++++++++||+.|+++|++....|++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            345678999999999999999999999999998889999888 6688999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCcccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGAYTIST  157 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~~~~~~  157 (159)
                      +|++||++-..+|.-+.  +|+.+|..+.. ++--|+||||.|+.+.|+|+...++.|+..+
T Consensus        83 lilvydiscqpsfdclp--ewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~q  142 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLP--EWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ  142 (213)
T ss_pred             EEEEEecccCcchhhhH--HHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh
Confidence            99999999999999999  99999999875 4555999999999999999998888876543

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=2.7e-30  Score=188.17  Aligned_cols=119  Identities=39%  Similarity=0.800  Sum_probs=110.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+|||++|||||||+++|..+.|...|.||.+..+...+.+++..+.+.+||++|++.|..++..+++++|++|+|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999988887778889999999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++++++|+.+.. .|...+....+++|++|||||+||.++
T Consensus        82 is~~~Sf~~i~~-~w~~~~~~~~~~~piiLVgnK~DL~~~  120 (222)
T cd04173          82 ISRPETLDSVLK-KWQGETQEFCPNAKVVLVGCKLDMRTD  120 (222)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEECcccccc
Confidence            999999999965 899888887789999999999999764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=6.1e-31  Score=181.05  Aligned_cols=134  Identities=34%  Similarity=0.619  Sum_probs=122.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      +...+||+++|++|+|||||++++.+++|...|..|++..+ .+.+.++++.+.+++|||+|+++|.++.-.+++++|..
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            35679999999999999999999999999999999999888 77889999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCccccc--CccccccCCCccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRK--DRQFHLDYPGAYT  154 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~--~r~v~~~~~~~~~  154 (159)
                      ++|||++++.+|..+.  .|-.++..+.     +..|++|+|||+|+.+  .|+|+.+.+..|.
T Consensus        86 vlvydv~~~~Sfe~L~--~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC  147 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLE--NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC  147 (210)
T ss_pred             EEEeecCChhhhccHH--HHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHH
Confidence            9999999999999999  9988877664     3689999999999976  3999999887764

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=3.6e-30  Score=181.44  Aligned_cols=119  Identities=73%  Similarity=1.273  Sum_probs=108.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+.+++.+.|...|.++.+..+...+..++..+++.+||++|++.+...+..++++++++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            69999999999999999999999999899999887777677788888999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++++++|..+.. .|+..+....+++|++|||||+|+.+.
T Consensus        82 ~~~~~sf~~~~~-~~~~~~~~~~~~~piilvgnK~Dl~~~  120 (174)
T cd01871          82 LVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDD  120 (174)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEeeChhhccC
Confidence            999999999864 798888877778999999999999653

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=4.5e-30  Score=179.19  Aligned_cols=131  Identities=31%  Similarity=0.620  Sum_probs=115.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..++++++++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            479999999999999999999999998888888776663 4567788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++++|..+.  .|+..+.... ++.|+++||||+|+.+.+.++.++++.++
T Consensus        82 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~  134 (166)
T cd04122          82 YDITRRSTYNHLS--SWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA  134 (166)
T ss_pred             EECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH
Confidence            9999999999998  9998887664 57899999999999988888877666554

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=1.3e-29  Score=180.78  Aligned_cols=121  Identities=50%  Similarity=0.836  Sum_probs=110.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      .||+++|++|||||||+++|..+.+...+.+|.+..+...+..++..+.+++||++|++.+..++..++.+++++|+|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            48999999999999999999999998888999888877667778888999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      ++++++|+.+.. .|+..+....++.|++|||||+|+.+.++
T Consensus        81 v~~~~sf~~~~~-~~~~~i~~~~~~~piilvgNK~Dl~~~~~  121 (189)
T cd04134          81 VDSPDSLENVES-KWLGEIREHCPGVKLVLVALKCDLREARN  121 (189)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence            999999998864 79999988778999999999999987664

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=8.4e-30  Score=176.74  Aligned_cols=128  Identities=30%  Similarity=0.552  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||++++..+.+...+.+|.+..+...+.+++..+.+.+||++|++.+..++..++++++++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888887777777888888999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772          103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++++.+|..+.  .|+..+....  ++.|+++|+||+|+.+.++++.+++..
T Consensus        82 ~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  131 (163)
T cd04136          82 ITSQSSFNDLQ--DLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQA  131 (163)
T ss_pred             CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHH
Confidence            99999999988  8888887653  479999999999998777776654433

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=1.5e-29  Score=176.04  Aligned_cols=130  Identities=35%  Similarity=0.614  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+++||++|++.+...+..++.+++++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            4899999999999999999999999888888888766 456777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++++|..+.  .|++.+.... .+.|+++||||.|+.++|+++.++++.++
T Consensus        81 d~~~~~sf~~~~--~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~  132 (161)
T cd04117          81 DISSERSYQHIM--KWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA  132 (161)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH
Confidence            999999999998  9999888766 47999999999999999988877766654

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=1.6e-29  Score=176.60  Aligned_cols=131  Identities=31%  Similarity=0.622  Sum_probs=115.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+++|++|+|||||++++.+++|...+.++.+..+ ...+..++..+.+++||++|++.+...+..++++++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999999988889887666 3466778888999999999999999888999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |||++++++|..+.  .|+..+.... .++|+++||||+|+.+.+++..++++.+
T Consensus        82 v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  134 (167)
T cd01867          82 VYDITDEKSFENIR--NWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEAL  134 (167)
T ss_pred             EEECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHH
Confidence            99999999999998  8999988765 5799999999999998887776665544

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=8.6e-30  Score=176.75  Aligned_cols=129  Identities=39%  Similarity=0.800  Sum_probs=118.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeee-eEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDN-FSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      ||+++|++|||||||+++|.++.+...+.++.+.. +...+..++..+.+.+||++|++.+...+..++.+++++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998444 46688889999999999999999999888899999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCccc
Q 044772          103 LISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ++++++|..+.  .|++.+....+ ++|++|+|||+|+.+.++++.+++++++
T Consensus        81 ~~~~~S~~~~~--~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~  131 (162)
T PF00071_consen   81 VTDEESFENLK--KWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFA  131 (162)
T ss_dssp             TTBHHHHHTHH--HHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHH
T ss_pred             ccccccccccc--cccccccccccccccceeeeccccccccccchhhHHHHHH
Confidence            99999999999  99999999987 7999999999999999999988777665

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=2.3e-29  Score=181.01  Aligned_cols=130  Identities=28%  Similarity=0.495  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +||+++|++|||||||+++|+++.+...+.+|.+..+ ...+..+ +..+.+.+||++|++.+..++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999999888899988766 3456666 7789999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhh-----CCCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHY-----APSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++++|..+.  .|+..+...     ..++|++|||||+|+.+.+.++.++.++++
T Consensus        81 ~D~t~~~s~~~~~--~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  137 (201)
T cd04107          81 FDVTRPSTFEAVL--KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC  137 (201)
T ss_pred             EECCCHHHHHHHH--HHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH
Confidence            9999999999998  898877653     257899999999999877777776655543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=2.3e-29  Score=174.85  Aligned_cols=129  Identities=30%  Similarity=0.527  Sum_probs=112.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||+++++.+.+...+.++.+..+...+..++..+.+++||++|++.|..++..++++++++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888888877666667778888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |++++++|..+.  .|+..+....  .++|+++|+||+|+..++.+..+++..
T Consensus        81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~  131 (163)
T cd04176          81 SLVNQQTFQDIK--PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRA  131 (163)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHH
Confidence            999999999998  8888887654  589999999999998776666544433

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=1.8e-29  Score=175.60  Aligned_cols=129  Identities=28%  Similarity=0.523  Sum_probs=114.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      ++||+++|.+|||||||+++++.+.+...+.+|.+..+...+.+++..+.+++||++|++.+..++..++++++++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            37999999999999999999999988888888988877777788888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |++++.+|..+.  .|+..+....  ++.|++||+||+|+...+.++.++++.
T Consensus        81 d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  131 (164)
T cd04175          81 SITAQSTFNDLQ--DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN  131 (164)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence            999999999998  8888877543  689999999999998877776554443

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=3.2e-29  Score=178.67  Aligned_cols=130  Identities=34%  Similarity=0.546  Sum_probs=115.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+++|++|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||++|++.+..++..++++++++++|
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            46899999999999999999999999988888998888877778888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ||++++++|..+.  .|+..+....  +++|+++|+||+|+.+.+.+..+++..
T Consensus        84 ~D~s~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~  135 (189)
T PTZ00369         84 YSITSRSSFEEIA--SFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE  135 (189)
T ss_pred             EECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            9999999999998  8888887654  488999999999998877777554443

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.96  E-value=4.3e-29  Score=175.22  Aligned_cols=118  Identities=68%  Similarity=1.207  Sum_probs=107.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI  104 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~  104 (159)
                      |+++|++|||||||++++.++.+...+.++....+...+.+++..+.+.+||++|++.+..++..++++++++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999999888889988888777788888899999999999999999999999999999999999


Q ss_pred             ChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772          105 SRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       105 ~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ++++|..+.. .|+..+....++.|++|||||+|+..++
T Consensus        81 ~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~  118 (174)
T smart00174       81 SPASFENVKE-KWYPEVKHFCPNTPIILVGTKLDLREDK  118 (174)
T ss_pred             CHHHHHHHHH-HHHHHHHhhCCCCCEEEEecChhhhhCh
Confidence            9999999864 7999998877899999999999997643

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.96  E-value=6.4e-29  Score=174.59  Aligned_cols=131  Identities=53%  Similarity=0.978  Sum_probs=114.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|+|||||+.++..+.+...+.+|..+.+...+.+++..+.+++||++|++.+...+..++++++++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999999999899999877777777888888999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCccc
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYT  154 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~  154 (159)
                      ++++++|+.+.. .|+..+....++.|+++|+||+|+..            +|.|..+++..||
T Consensus        81 ~~~~~sf~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a  143 (173)
T cd04130          81 VVNPSSFQNISE-KWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA  143 (173)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence            999999999865 79988887667899999999999964            4556655554443

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=6.3e-29  Score=178.71  Aligned_cols=124  Identities=25%  Similarity=0.378  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEEC-----CeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVD-----GRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      +||+++|++|||||||++++..+.|...+.+|.+..+. +.+.++     +..+.+++||++|++.+..++..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999999999999888999886553 344443     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhh--------------------CCCCCEEEEeeCcccccCcccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHY--------------------APSVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~--------------------~~~~piilv~nK~Dl~~~r~v~~~  148 (159)
                      +|+|||++++.+|+.+.  .|+..+...                    ..++|++|||||+|+.+.|.++.+
T Consensus        81 iIlVyDvtn~~Sf~~l~--~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~  150 (202)
T cd04102          81 IILVHDLTNRKSSQNLQ--RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN  150 (202)
T ss_pred             EEEEEECcChHHHHHHH--HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence            99999999999999998  999998753                    136899999999999888876654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01865 Rab3 Rab3 subfamily

Probab=99.96  E-value=6e-29  Score=173.43  Aligned_cols=127  Identities=31%  Similarity=0.634  Sum_probs=111.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||+++|.++++...+.++.+..+. ..+..++..+.+.+||++|++.+...+..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888876553 35566777889999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCC
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPG  151 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~  151 (159)
                      |++++++|..+.  .|+..+.... .+.|+++|+||+|+.+.+.+..++++
T Consensus        82 d~~~~~s~~~~~--~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~  130 (165)
T cd01865          82 DITNEESFNAVQ--DWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGR  130 (165)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHH
Confidence            999999999998  9999998766 57999999999999887777655443

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=7.6e-29  Score=187.26  Aligned_cols=138  Identities=21%  Similarity=0.334  Sum_probs=117.0

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-------------CeEEEEEEEeCCCcc
Q 044772           16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-------------GRTVNLGLWDTAGQE   81 (159)
Q Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~   81 (159)
                      ...+...+||+|+|+.|||||||+++|+.+.+...+.+|++..+ .+.+.++             +..+.++|||++|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            44567779999999999999999999999999888899998766 3445543             246889999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-------------CCCCEEEEeeCcccccCc---c-
Q 044772           82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-------------PSVPIVLVGTKLDLRKDR---Q-  144 (159)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-------------~~~piilv~nK~Dl~~~r---~-  144 (159)
                      .|..++..++++++++|+|||++++.+|..+.  .|+..+....             .++|++|||||+||..++   + 
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~--kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~  172 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQ--KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS  172 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence            99999999999999999999999999999998  9999998753             258999999999997653   3 


Q ss_pred             --ccccCCCcccc
Q 044772          145 --FHLDYPGAYTI  155 (159)
Q Consensus       145 --v~~~~~~~~~~  155 (159)
                        +..++++.||.
T Consensus       173 s~~~~e~a~~~A~  185 (334)
T PLN00023        173 SGNLVDAARQWVE  185 (334)
T ss_pred             ccccHHHHHHHHH
Confidence              35677777764

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.96  E-value=7.2e-29  Score=172.95  Aligned_cols=130  Identities=32%  Similarity=0.692  Sum_probs=114.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999998888888877655 44667788889999999999999998989999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ||++++++|..+.  .|+..+.... ++.|+++|+||+|+.+.+.+..++++.+
T Consensus        82 ~d~~~~~s~~~l~--~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~  133 (166)
T cd01869          82 YDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF  133 (166)
T ss_pred             EECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH
Confidence            9999999999998  8999988776 5799999999999988887776655444

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=4e-30  Score=173.35  Aligned_cols=140  Identities=33%  Similarity=0.608  Sum_probs=126.5

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772           15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG   93 (159)
Q Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   93 (159)
                      ....+...+|++++|..=||||||+.|++.++|......|.--.| .+.+.+.+....+.|||+.|+++|...-+-||++
T Consensus         6 ~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg   85 (218)
T KOG0088|consen    6 NVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG   85 (218)
T ss_pred             cccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence            334567889999999999999999999999999988777775555 5567778888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS  156 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~  156 (159)
                      ++++++|||++|+++|+.++  .|..+++... ..+-+++||||+||+++|+|+..++++||.|
T Consensus        86 SnGalLVyDITDrdSFqKVK--nWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAes  147 (218)
T KOG0088|consen   86 SNGALLVYDITDRDSFQKVK--NWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAES  147 (218)
T ss_pred             CCceEEEEeccchHHHHHHH--HHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHh
Confidence            99999999999999999999  9999999876 4788999999999999999999999999976

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.96  E-value=6.3e-29  Score=172.29  Aligned_cols=129  Identities=34%  Similarity=0.602  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC--CeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD--GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+.  +..+++++||++|++.+...+..++++++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            4899999999999999999999999888888887766 3455555  677899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCcc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |||++++++|..+.  .|+..+.....++|+++|+||+|+..++.++.++++.+
T Consensus        81 v~d~~~~~s~~~l~--~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~  132 (162)
T cd04106          81 VFSTTDRESFEAIE--SWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEAL  132 (162)
T ss_pred             EEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHH
Confidence            99999999999988  99999887778999999999999988888776654443

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04140 ARHI_like ARHI subfamily

Probab=99.96  E-value=8.3e-29  Score=172.72  Aligned_cols=128  Identities=27%  Similarity=0.466  Sum_probs=111.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+++++++.+...+.++.+..+......+...+.+.+||++|++.+..++..++..++++|+|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888898887777666777788899999999999999888889999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCCc
Q 044772          103 LISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++++++|..+.  .|+..+....    +++|++||+||+|+...+.+..+++..
T Consensus        82 ~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  133 (165)
T cd04140          82 VTSKQSLEELK--PIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA  133 (165)
T ss_pred             CCCHHHHHHHH--HHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH
Confidence            99999999998  7877776543    579999999999998877777655443

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=3.6e-29  Score=178.54  Aligned_cols=128  Identities=37%  Similarity=0.590  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      ||+++|.+|||||||+++|..+.|...+.++.+..+...+..++..+.+.+||++|++.+..++..++++++++|+|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999999988888988877766677888888999999999999999999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          104 ISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +++.+|..+.  .|+..+....    .+.|++|||||+|+...+.++.+++..+
T Consensus        81 ~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~  132 (190)
T cd04144          81 TSRSTFERVE--RFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL  132 (190)
T ss_pred             CCHHHHHHHH--HHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH
Confidence            9999999998  8888776553    4789999999999988888876655443

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=7.8e-29  Score=174.85  Aligned_cols=132  Identities=36%  Similarity=0.610  Sum_probs=113.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVD----------GRTVNLGLWDTAGQEDYNRLRPL   89 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   89 (159)
                      ..+||+++|++|||||||++++..+.+...+.++.+..+. ..+.+.          +..+.+.+||++|++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            4689999999999999999999999999888888876653 334333          45688999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ++++++++++|||++++++|..+.  .|+..+....  +++|+++||||+|+.+.+.++.+++..++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~  147 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVR--NWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA  147 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH
Confidence            999999999999999999999998  9999887654  57899999999999888888776655443

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.96  E-value=9.7e-29  Score=175.51  Aligned_cols=120  Identities=52%  Similarity=1.008  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||+++|.++.+...+.++.+..+...+... +..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999998888898887776556665 67889999999999999989889999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      |++++++|..+.. .|+..+....++.|+++||||+|+...+
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~  121 (187)
T cd04132          81 AVDNPTSLDNVED-KWFPEVNHFCPGTPIMLVGLKTDLRKDK  121 (187)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence            9999999999864 7998887777789999999999997543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=99.96  E-value=1.4e-28  Score=176.76  Aligned_cols=130  Identities=30%  Similarity=0.563  Sum_probs=114.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+||++|++.+...+..++.+++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            468999999999999999999999999888888887655 3466677878899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |||++++++|..+.  .|+..+....+..|++|||||+|+.+.+.++.+++..
T Consensus        85 v~D~~~~~s~~~~~--~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~  135 (199)
T cd04110          85 VYDVTNGESFVNVK--RWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYK  135 (199)
T ss_pred             EEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHH
Confidence            99999999999998  9999998877889999999999998877776555443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.96  E-value=1.2e-28  Score=172.67  Aligned_cols=131  Identities=30%  Similarity=0.599  Sum_probs=114.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCccccc-ccccccccCCcEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYN-RLRPLSYRGADVFIL   99 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~   99 (159)
                      .+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999999998888888877655 4466778888999999999998886 478889999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |||++++++|..+.  .|+..+....  .++|+++|+||+|+.+.++++.+++.+++
T Consensus        82 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  136 (170)
T cd04115          82 VYDVTNMASFHSLP--SWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA  136 (170)
T ss_pred             EEECCCHHHHHhHH--HHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH
Confidence            99999999999998  9999888765  57999999999999998888877665554

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01864 Rab19 Rab19 subfamily

Probab=99.96  E-value=1.7e-28  Score=170.91  Aligned_cols=130  Identities=30%  Similarity=0.616  Sum_probs=112.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999998887777776554 4566778877899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |||++++++|..+.  .|+..+.... .++|+++|+||+|+.+.+.+..++++.
T Consensus        82 v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  133 (165)
T cd01864          82 AYDITRRSSFESVP--HWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACT  133 (165)
T ss_pred             EEECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHH
Confidence            99999999999988  9999988764 589999999999998877666554433

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=3.8e-29  Score=178.87  Aligned_cols=133  Identities=35%  Similarity=0.573  Sum_probs=123.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+|++++|.+|||||+|..+|..+.|...|.||+++.|.+.+.+++..+.+.|+|++|++.+..+...++.+.+++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      |+++++.||+.+.  .+.+.|.+..  .++|+++||||+|+...|+|+.++++++|.
T Consensus        82 ysitd~~SF~~~~--~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~  136 (196)
T KOG0395|consen   82 YSITDRSSFEEAK--QLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR  136 (196)
T ss_pred             EECCCHHHHHHHH--HHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH
Confidence            9999999999999  7888884433  478999999999999999999999777653

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=1.2e-28  Score=171.24  Aligned_cols=128  Identities=34%  Similarity=0.588  Sum_probs=112.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+++++++.+...+.++.+..+......++..+.+.+||++|++.+..++..++++++++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999998888888887777777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772          103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++++++|..+.  .|...+.+..  .+.|+++|+||+|+...+.++.++...
T Consensus        81 ~~~~~s~~~~~--~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~  130 (164)
T smart00173       81 ITDRQSFEEIK--KFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE  130 (164)
T ss_pred             CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH
Confidence            99999999998  7877776543  378999999999998877776555433

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.96  E-value=1.5e-28  Score=170.91  Aligned_cols=129  Identities=25%  Similarity=0.561  Sum_probs=112.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+++||++|++.+..++..++++++++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888899888766 446777888899999999999999989999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC------CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA------PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |++++++|..+.  .|+..+....      .+.|+++|+||+|+.+.+.++.++++.+
T Consensus        81 D~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  136 (168)
T cd04119          81 DVTDRQSFEALD--SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW  136 (168)
T ss_pred             ECCCHHHHHhHH--HHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH
Confidence            999999999988  8999887764      3689999999999986666666555444

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.96  E-value=2.1e-28  Score=169.17  Aligned_cols=123  Identities=37%  Similarity=0.604  Sum_probs=108.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+++||++|++.+..++..++++++++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            36999999999999999999999999888889988777777788888888999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHL  147 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~  147 (159)
                      |++++.+|..+.  .|+..+.+..  .+.|++||+||+|+.+ +.+..
T Consensus        81 ~~~~~~s~~~~~--~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~  125 (162)
T cd04138          81 AINSRKSFEDIH--TYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSS  125 (162)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccc-ceecH
Confidence            999999999987  7888877664  4789999999999975 34433

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=7.6e-28  Score=175.36  Aligned_cols=120  Identities=30%  Similarity=0.523  Sum_probs=109.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.|..++..++++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            6779999999999999999999999999888899987665 345666777789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +|||++++++|..+.  .|+..+....++.|++|||||+|+..
T Consensus        91 lvfD~~~~~s~~~i~--~w~~~i~~~~~~~piilvgNK~Dl~~  131 (219)
T PLN03071         91 IMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKN  131 (219)
T ss_pred             EEEeCCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEEchhhhh
Confidence            999999999999998  99999998888999999999999963

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=3.8e-28  Score=169.88  Aligned_cols=131  Identities=37%  Similarity=0.670  Sum_probs=112.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+++||++|++.+..++..+++.+++++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            3569999999999999999999999999888888877665 456778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|||++++++|..+.  .|+..+....     .++|++||+||+|+. .+.++.++.+++
T Consensus        83 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~  139 (170)
T cd04116          83 LTFAVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAW  139 (170)
T ss_pred             EEEECCCHHHHHhHH--HHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHH
Confidence            999999999999998  8988776543     368999999999996 566666555444

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04128 Spg1 Spg1p

Probab=99.96  E-value=2.8e-28  Score=173.02  Aligned_cols=115  Identities=30%  Similarity=0.635  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||+++|+.+.|...|.+|.+..+ .+.+.+++..+.+++||++|++.+..++..++++++++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999988999998766 457778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLR  140 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~  140 (159)
                      |++++.+|..+.  .|+..+....+ ..| ++||||+|+.
T Consensus        81 D~t~~~s~~~i~--~~~~~~~~~~~~~~p-ilVgnK~Dl~  117 (182)
T cd04128          81 DLTRKSTLNSIK--EWYRQARGFNKTAIP-ILVGTKYDLF  117 (182)
T ss_pred             ECcCHHHHHHHH--HHHHHHHHhCCCCCE-EEEEEchhcc
Confidence            999999999998  89999887654 456 6889999995

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.96  E-value=2.9e-28  Score=169.16  Aligned_cols=129  Identities=33%  Similarity=0.563  Sum_probs=113.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|+|||||+++++++.+...+.++....+.....+++..+.+++||+||++.+..++..++++++++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            47999999999999999999999998888888887777666778888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |++++.+|..+.  .|+..+.+..  .+.|++||+||+|+..++.++.+++.+
T Consensus        82 d~~~~~s~~~~~--~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~  132 (164)
T cd04145          82 SVTDRGSFEEVD--KFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE  132 (164)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH
Confidence            999999999998  8888877653  578999999999998877776555443

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01868 Rab11_like Rab11-like

Probab=99.96  E-value=3e-28  Score=169.54  Aligned_cols=130  Identities=36%  Similarity=0.636  Sum_probs=113.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||++|++.+...+..++++++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            57999999999999999999999998878888887665 45677788888999999999999998889999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCcc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ||++++.+|..+.  .|+..+..... ++|++||+||+|+...+++..++...+
T Consensus        83 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~  134 (165)
T cd01868          83 YDITKKQTFENVE--RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAF  134 (165)
T ss_pred             EECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHH
Confidence            9999999999998  89999887764 699999999999988777766554443

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04125 RabA_like RabA-like subfamily

Probab=99.96  E-value=3.8e-28  Score=172.85  Aligned_cols=130  Identities=30%  Similarity=0.571  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999999877888887665 446677888899999999999999989999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++++|..+.  .|+..+.... .+.|+++|+||+|+.+.+.+..++++.++
T Consensus        81 d~~~~~s~~~i~--~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~  132 (188)
T cd04125          81 DVTDQESFENLK--FWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC  132 (188)
T ss_pred             ECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH
Confidence            999999999998  8999988765 46899999999999988877766655443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04135 Tc10 TC10 subfamily

Probab=99.96  E-value=6.8e-28  Score=169.10  Aligned_cols=119  Identities=60%  Similarity=1.145  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||++|++.+...+..++.+++++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888887776677788888899999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.++.+|+.+.. .|++.+....++.|+++|+||+|+.+.
T Consensus        81 ~~~~~s~~~~~~-~~~~~l~~~~~~~piivv~nK~Dl~~~  119 (174)
T cd04135          81 VVNPASFQNVKE-EWVPELKEYAPNVPYLLVGTQIDLRDD  119 (174)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence            999999999875 798888877778999999999998654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04109 Rab28 Rab28 subfamily

Probab=99.96  E-value=3e-28  Score=176.95  Aligned_cols=130  Identities=31%  Similarity=0.491  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++ ..+.+++||++|++.+...+..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999989999987554 45666654 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++++|..+.  .|+..+.+..    .++|+++|+||+|+.+.|+++.++++.++
T Consensus        81 ~D~t~~~s~~~~~--~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~  136 (215)
T cd04109          81 YDVTNSQSFENLE--DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA  136 (215)
T ss_pred             EECCCHHHHHHHH--HHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH
Confidence            9999999999998  8999888764    25789999999999888888776655443

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=2.6e-28  Score=180.56  Aligned_cols=128  Identities=29%  Similarity=0.471  Sum_probs=112.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+++|+.+.|...|.+|.++.+...+.+++..+.++|||++|++.|..++..++.++|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998888999887677777888989999999999999998888888999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhh----------CCCCCEEEEeeCcccccCccccccCCCc
Q 044772          103 LISRPSYENISKKKWVPELRHY----------APSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~----------~~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++++++|+.+.  .|+..+...          ..++|++||+||+|+...+++..++..+
T Consensus        81 v~~~~Sf~~i~--~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~  138 (247)
T cd04143          81 LDNRESFEEVC--RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQ  138 (247)
T ss_pred             CCCHHHHHHHH--HHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHH
Confidence            99999999998  888877653          2479999999999998777777655443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=1e-28  Score=174.25  Aligned_cols=138  Identities=64%  Similarity=1.109  Sum_probs=123.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+|+++||+.++|||+|+..+..+.|...|.||..++|...+.++ +..+.+.+|||.|++.|.+.+...|+++|.++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35689999999999999999999999999999999999999989995 99999999999999999998888999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc--cccCCCccccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF--HLDYPGAYTISTE  158 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v--~~~~~~~~~~~~~  158 (159)
                      +||++.++.+|.++.. .|+.++.++++++|++|||+|.||.++...  ...+.++-+++.+
T Consensus        82 ~cfsv~~p~S~~nv~~-kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~  142 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKS-KWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYE  142 (198)
T ss_pred             EEEEcCChhhHHHHHh-hhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHH
Confidence            9999999999999988 999999999999999999999999965533  2334455555544

>PLN03110 Rab GTPase; Provisional

Probab=99.95  E-value=5.2e-28  Score=175.91  Aligned_cols=134  Identities=32%  Similarity=0.550  Sum_probs=118.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..++++++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            34678999999999999999999999998878888888766 45777888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |+|||++++.+|..+.  .|+..+.... .++|+++|+||+|+...+.++.++++.++
T Consensus        89 ilv~d~~~~~s~~~~~--~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~  144 (216)
T PLN03110         89 LLVYDITKRQTFDNVQ--RWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA  144 (216)
T ss_pred             EEEEECCChHHHHHHH--HHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH
Confidence            9999999999999998  9999888775 47999999999999888888766655543

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=2e-29  Score=170.65  Aligned_cols=133  Identities=31%  Similarity=0.514  Sum_probs=119.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ..+++++||++-||||||++.|..++|..-..||.+..+ ...+++ ++..+++++|||.|+++|+++.+.|++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            467999999999999999999999999988899998777 334444 578899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC--C-CCCEEEEeeCcccccCccccccCCCcccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA--P-SVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~-~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      +|||++++++|+.+.  .|+.+...+.  + ++.++|||+|+||..+|+|+.||++.+|-
T Consensus        87 lvyditnr~sfehv~--~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa  144 (213)
T KOG0091|consen   87 LVYDITNRESFEHVE--NWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA  144 (213)
T ss_pred             EEEeccchhhHHHHH--HHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH
Confidence            999999999999999  9999887665  2 56679999999999999999999998763

>cd04113 Rab4 Rab4 subfamily

Probab=99.95  E-value=4.2e-28  Score=168.20  Aligned_cols=129  Identities=33%  Similarity=0.623  Sum_probs=111.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||+++|.++++...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887777776655 446677888889999999999999989999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |++++++|..+.  .|+..+.... +++|++||+||+|+.+.+.+..+++..+
T Consensus        81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~  131 (161)
T cd04113          81 DITNRTSFEALP--TWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF  131 (161)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence            999999999998  8998887654 6899999999999988777766555443

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=8.9e-28  Score=172.10  Aligned_cols=130  Identities=43%  Similarity=0.710  Sum_probs=105.5

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCccccee--eeeEEE--------EEECCeEEEEEEEeCCCcccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLI-SYTGNT-----FPTDYVPTVF--DNFSAN--------VMVDGRTVNLGLWDTAGQEDYNR   85 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~-~l~~~~-----~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   85 (159)
                      .+||+++|++|||||||+. ++.++.     +...|.||.+  ..+...        ..+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 555443     4566788885  334322        25678889999999999875  3


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc-------------------Ccccc
Q 044772           86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK-------------------DRQFH  146 (159)
Q Consensus        86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~-------------------~r~v~  146 (159)
                      +...++++++++|+|||++++.+|..+.. .|+..+....++.|++|||||+||.+                   .|.|+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~-~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKT-MWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            45678999999999999999999999974 69999988777899999999999974                   47888


Q ss_pred             ccCCCccc
Q 044772          147 LDYPGAYT  154 (159)
Q Consensus       147 ~~~~~~~~  154 (159)
                      .++++.+|
T Consensus       159 ~~e~~~~a  166 (195)
T cd01873         159 PETGRAVA  166 (195)
T ss_pred             HHHHHHHH
Confidence            88887776

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=6.4e-28  Score=168.75  Aligned_cols=132  Identities=29%  Similarity=0.612  Sum_probs=114.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+++|++|||||||++++.++++...+.++.+..+ ...+..++..+.+.+||++|++.+......+++.++++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999998877777776655 4466778878899999999999998888899999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |||++++++|..+.  .|+..+..+. +++|++||+||.|+...+.++.++++.++
T Consensus        83 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~  136 (168)
T cd01866          83 VYDITRRETFNHLT--SWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFA  136 (168)
T ss_pred             EEECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH
Confidence            99999999999998  9999998765 68999999999999877777766655443

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=2e-27  Score=166.82  Aligned_cols=119  Identities=36%  Similarity=0.597  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      ||+++|++|||||||+++++.+.|...|.+|.+..+. ..+.+++..+.+++||++|++.+..++..++++++++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            7999999999999999999999999999999987764 566778888899999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCcc
Q 044772          103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~  144 (159)
                      ++++++|..+.  .|+..+.+..  .+.|+++|+||+|+.+.+.
T Consensus        82 ~~~~~s~~~~~--~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~  123 (170)
T cd04108          82 LTDVASLEHTR--QWLEDALKENDPSSVLLFLVGTKKDLSSPAQ  123 (170)
T ss_pred             CcCHHHHHHHH--HHHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence            99999999998  8999876543  3578999999999976544

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01892 Miro2 Miro2 subfamily

Probab=99.95  E-value=1.6e-27  Score=167.13  Aligned_cols=126  Identities=21%  Similarity=0.295  Sum_probs=108.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ...+||+++|++|||||||+++|+++.+. ..|.+|.+..+. ..+..++..+.+.+||++|++.+..++..++.++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46789999999999999999999999998 889999887764 4567788778899999999999988889999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~  148 (159)
                      ++|||++++.+|..+.  .|+..+... .++|+++|+||+|+.+.+++..+
T Consensus        82 llv~d~~~~~s~~~~~--~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~  129 (169)
T cd01892          82 CLVYDSSDPKSFSYCA--EVYKKYFML-GEIPCLFVAAKADLDEQQQRYEV  129 (169)
T ss_pred             EEEEeCCCHHHHHHHH--HHHHHhccC-CCCeEEEEEEccccccccccccc
Confidence            9999999999999887  888765432 37999999999999776665443

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.95  E-value=3.3e-28  Score=169.51  Aligned_cols=129  Identities=31%  Similarity=0.489  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCcEEEEEEe
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~i~v~d  102 (159)
                      ||+++|++|||||||+++++.+.+...+.++....+......++..+.+++||++|++. +......+++++|++|+|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            68999999999999999999998888888888766766677888888999999999985 34556778999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          103 LISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ++++++|..+.  .|+..+....   .++|+++|+||+|+...+.++.+++++++
T Consensus        81 ~~~~~s~~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  133 (165)
T cd04146          81 ITDRSSFDEIS--QLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA  133 (165)
T ss_pred             CCCHHHHHHHH--HHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH
Confidence            99999999998  8888777654   48999999999999888877776665543

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=8.4e-28  Score=174.23  Aligned_cols=131  Identities=31%  Similarity=0.517  Sum_probs=112.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+ ++..+.+++||++|++.+...+..++++++++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            48999999999999999999999999888888877555 445555 4667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |||++++++|..+.  .|+..+....  ..+|++|||||+|+.+.+.++.++++.++
T Consensus        82 v~D~~~~~Sf~~l~--~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~  136 (211)
T cd04111          82 VFDITNRESFEHVH--DWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA  136 (211)
T ss_pred             EEECCCHHHHHHHH--HHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence            99999999999998  8999887664  36789999999999988888877665543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=99.95  E-value=4.3e-27  Score=163.54  Aligned_cols=117  Identities=32%  Similarity=0.624  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|.+|||||||+++++.+.+.+.+.++.+... ......++..+.+++||++|++.+..++..++++++++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999999877777765444 445567788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |++++.+|..+.  .|+..+....++.|+++|+||+|+..
T Consensus        81 d~~~~~s~~~~~--~~~~~i~~~~~~~p~ivv~nK~Dl~~  118 (161)
T cd04124          81 DVTRKITYKNLS--KWYEELREYRPEIPCIVVANKIDLDP  118 (161)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEECccCch
Confidence            999999999988  99999988777899999999999853

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=5.7e-27  Score=163.85  Aligned_cols=116  Identities=33%  Similarity=0.587  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||+++++.+.+...+.++.+..+. ..+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888888888876553 34555777889999999999999888889999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      |++++++|..+.  .|+..+....+++|+++||||+|+.
T Consensus        81 d~~~~~s~~~~~--~~~~~i~~~~~~~piiiv~nK~Dl~  117 (166)
T cd00877          81 DVTSRVTYKNVP--NWHRDLVRVCGNIPIVLCGNKVDIK  117 (166)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEEchhcc
Confidence            999999999998  9999999888899999999999997

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.95  E-value=1.3e-27  Score=165.96  Aligned_cols=124  Identities=24%  Similarity=0.345  Sum_probs=104.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+.+++.+.|...+.++ +..+...+.+++..+.+.+||++|++.     ..++++++++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            58999999999999999999999888776655 444556778888888999999999964     346788999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccc--cCccccccCCCccc
Q 044772          103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLR--KDRQFHLDYPGAYT  154 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~--~~r~v~~~~~~~~~  154 (159)
                      ++++.+|+.+.  .|+..+..+.  +++|++|||||+|+.  ..|.|+.++++.++
T Consensus        75 ~~~~~sf~~~~--~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~  128 (158)
T cd04103          75 LENEASFQTVY--NLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLC  128 (158)
T ss_pred             CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHH
Confidence            99999999998  8999998775  579999999999995  36788877665554

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=1.7e-27  Score=172.45  Aligned_cols=133  Identities=28%  Similarity=0.580  Sum_probs=116.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..++++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            4569999999999999999999999998888888887666 446677888889999999999999988899999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++++|..+.  .|+..+.... ++.|+++|+||+|+...+.++.+++++++
T Consensus        84 lv~D~~~~~s~~~l~--~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~  138 (210)
T PLN03108         84 LVYDITRRETFNHLA--SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA  138 (210)
T ss_pred             EEEECCcHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH
Confidence            999999999999988  8988877654 57999999999999988888877766554

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.6e-28  Score=162.05  Aligned_cols=136  Identities=29%  Similarity=0.586  Sum_probs=125.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      ..+..+|.+++|+-|+|||+|+++|...+|..+...|++..+ ...+.+.+.++++++||+.|+++|+...+.|++.+.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            346788999999999999999999999999988888999888 5577889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      .++|||++.+.+++.+.  .|+...+..- ++..|+++|||.||+.+|.|+.|++++||.
T Consensus        87 almvyditrrstynhls--swl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~fae  144 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAE  144 (215)
T ss_pred             eeEEEEehhhhhhhhHH--HHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHh
Confidence            99999999999999999  9998887654 788899999999999999999999999875

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.95  E-value=3.5e-27  Score=165.59  Aligned_cols=119  Identities=60%  Similarity=1.069  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      .||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++.+++++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            68999999999999999999999998888899887776677788888999999999999998888889999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++++++|..+.. .|+..+....++.|+++|+||+|+.+.
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~  120 (175)
T cd01870          82 IDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRND  120 (175)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeeChhcccC
Confidence            999999998865 799888877778999999999998653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=2e-27  Score=169.69  Aligned_cols=128  Identities=34%  Similarity=0.664  Sum_probs=110.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +||+++|++|||||||+++|..+.+. ..+.++.+..+. ..+.+++..+.++|||++|++.+...+..++++++++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999999886 367777776664 3567788889999999999999988888999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ||++++++|..+.  .|+..+.... .++|+++|+||+|+...+.+..++++.
T Consensus        81 ~D~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~  131 (191)
T cd04112          81 YDITNKASFDNIR--AWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGER  131 (191)
T ss_pred             EECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHH
Confidence            9999999999998  8999988876 479999999999998777776655443

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01861 Rab6 Rab6 subfamily

Probab=99.95  E-value=2.4e-27  Score=164.20  Aligned_cols=128  Identities=35%  Similarity=0.584  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+++++||+||++.+..++..++++++++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998877777777655 456677777788999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |++++++|..+.  .|+..+..... +.|+++++||+|+...+++..++...
T Consensus        81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~  130 (161)
T cd01861          81 DITNRQSFDNTD--KWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEK  130 (161)
T ss_pred             ECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHH
Confidence            999999999988  89998876553 79999999999997766666554433

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04126 Rab20 Rab20 subfamily

Probab=99.95  E-value=2e-27  Score=173.03  Aligned_cols=127  Identities=32%  Similarity=0.469  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|.+|||||||+++|+.+.|.. +.+|.+..+...   ....+.+.+||++|++.+..++..++++++++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999999864 567766544321   1245789999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCccccc-------------------CccccccCCCcccc
Q 044772          103 LISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK-------------------DRQFHLDYPGAYTI  155 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~-------------------~r~v~~~~~~~~~~  155 (159)
                      ++++++|..+.  .|+..+.+. .+++|++|||||+|+.+                   .|+|+.++++.||.
T Consensus        77 vt~~~Sf~~l~--~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~  147 (220)
T cd04126          77 VSNVQSLEELE--DRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYK  147 (220)
T ss_pred             CCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHH
Confidence            99999999998  666555544 35799999999999976                   78888888877763

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04177 RSR1 RSR1 subgroup

Probab=99.95  E-value=3.1e-27  Score=165.22  Aligned_cols=128  Identities=33%  Similarity=0.546  Sum_probs=112.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+++||++|++.|..++..+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            37899999999999999999999999888888888777777778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCC
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPG  151 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~  151 (159)
                      |++++++|+.+.  .|...+.+..  .+.|+++++||+|+...+.++.+++.
T Consensus        81 ~~~~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~  130 (168)
T cd04177          81 SVTSEASLNELG--ELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV  130 (168)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH
Confidence            999999999998  8888877543  47999999999999887776655443

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04118 Rab24 Rab24 subfamily

Probab=99.95  E-value=4.5e-27  Score=167.80  Aligned_cols=117  Identities=37%  Similarity=0.627  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +||+++|++|||||||+++|+.+.+.. .+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..++.+++++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999999874 6888887766 44677888889999999999999998988999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ||++++.+|..+.  .|+..+....++.|+++|+||+|+.+
T Consensus        81 ~d~~~~~s~~~~~--~~~~~i~~~~~~~piilv~nK~Dl~~  119 (193)
T cd04118          81 YDLTDSSSFERAK--FWVKELQNLEEHCKIYLCGTKSDLIE  119 (193)
T ss_pred             EECCCHHHHHHHH--HHHHHHHhcCCCCCEEEEEEcccccc
Confidence            9999999999987  89999887767899999999999854

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.95  E-value=3.5e-27  Score=163.88  Aligned_cols=125  Identities=36%  Similarity=0.609  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      +||+++|++|||||||++++..+  .+...+.++.+..+ ...+..+ +..+++.+||++|++.+..++..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  67788888887655 3445554 56789999999999999888899999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      +|||++++++|..+.  .|++.+.....+.|+++|+||+|+..++++..++
T Consensus        81 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  129 (164)
T cd04101          81 LVYDVSNKASFENCS--RWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQ  129 (164)
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECcccccccCCCHHH
Confidence            999999999999887  9999988776789999999999998776665433

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.95  E-value=4.5e-27  Score=163.06  Aligned_cols=129  Identities=40%  Similarity=0.716  Sum_probs=111.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+++||++|++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999998877778877665 346677788889999999999999989999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |+++++++..+.  .|+..+..+. +++|+++|+||+|+...+++..++++.+
T Consensus        81 d~~~~~s~~~~~--~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~  131 (164)
T smart00175       81 DITNRESFENLK--NWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF  131 (164)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH
Confidence            999999999988  8999888776 6899999999999987666665544443

Rab GTPases are implicated in vesicle trafficking.

>cd04142 RRP22 RRP22 subfamily

Probab=99.95  E-value=5.9e-27  Score=168.24  Aligned_cols=127  Identities=24%  Similarity=0.424  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLSYRG   93 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   93 (159)
                      +||+++|.+|||||||+++|.++.|...+.|+.+... ...+..++..+.+++||++|.+.+..        ....++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888886443 44566788889999999999755421        12345789


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCC
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPG  151 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~  151 (159)
                      +|++|+|||++++++|+.+.  .|+..+....    .++|++||+||+|+.+.+.+..++.+
T Consensus        81 ad~iilv~D~~~~~S~~~~~--~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~  140 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVK--LLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLS  140 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHH--HHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHH
Confidence            99999999999999999998  8888777653    57999999999999887777665443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=8.7e-27  Score=167.51  Aligned_cols=116  Identities=30%  Similarity=0.559  Sum_probs=104.6

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh
Q 044772           28 VRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR  106 (159)
Q Consensus        28 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~  106 (159)
                      +|.+|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.|..++..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888899987666 45667788889999999999999999999999999999999999999


Q ss_pred             hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772          107 PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus       107 ~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ++|..+.  .|+..+.+..+++|++|||||+|+.. +.+.
T Consensus        81 ~S~~~i~--~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~  117 (200)
T smart00176       81 VTYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKD-RKVK  117 (200)
T ss_pred             HHHHHHH--HHHHHHHHhCCCCCEEEEEECccccc-ccCC
Confidence            9999998  99999998888999999999999964 4444

Ran is involved in the active transport of proteins through nuclear pores.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.94  E-value=8e-27  Score=161.84  Aligned_cols=127  Identities=38%  Similarity=0.653  Sum_probs=110.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|++|+|||||+++++++++...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998876777777655 55778888889999999999999988888899999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCC
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYP  150 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~  150 (159)
                      ||++++++|..+.  .|+..+.... +.+|+++++||+|+...+.+..++.
T Consensus        81 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~  129 (163)
T cd01860          81 YDITSEESFEKAK--SWVKELQRNASPNIIIALVGNKADLESKRQVSTEEA  129 (163)
T ss_pred             EECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHH
Confidence            9999999999998  8988887766 6799999999999987666555443

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=168.04  Aligned_cols=133  Identities=31%  Similarity=0.536  Sum_probs=110.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+++|++|||||||+++|+++.+. .+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++++
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            3345799999999999999999999988874 5677776655 3456677878899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      +|+|||++++++|..+.. .|...+..+.  .+.|++||+||+|+...+.++.+++..
T Consensus        89 ~vlv~D~~~~~sf~~~~~-~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~  145 (211)
T PLN03118         89 IILVYDVTRRETFTNLSD-VWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA  145 (211)
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence            999999999999999975 5777665443  468999999999998877776555544

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.94  E-value=8.1e-27  Score=162.81  Aligned_cols=118  Identities=19%  Similarity=0.255  Sum_probs=102.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      .|+++|++|||||||+++|.++.+...+.||.+..+   ..++...+.+.+||++|++.+..++..++++++++|+|||.
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            479999999999999999999888888888877543   23445567899999999999999999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772          104 ISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      +++.+|..+.  .|+..+....+++|+++|+||+|+...+.++
T Consensus        78 t~~~s~~~~~--~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~  118 (164)
T cd04162          78 ADSERLPLAR--QELHQLLQHPPDLPLVVLANKQDLPAARSVQ  118 (164)
T ss_pred             CCHHHHHHHH--HHHHHHHhCCCCCcEEEEEeCcCCcCCCCHH
Confidence            9999999887  7888776555789999999999998877665

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00157 Rho Rho (Ras homology) family

Probab=99.94  E-value=6.1e-26  Score=158.46  Aligned_cols=121  Identities=69%  Similarity=1.221  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|+|||||+++|.++.+...+.++....+......++..+.+++||++|++.+......+++.++++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999998778888877776667778888999999999999888888888899999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      ++++++|..... .|+..+.....+.|+++|+||+|+.+.+.
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  121 (171)
T cd00157          81 VDSPSSFENVKT-KWIPEIRHYCPNVPIILVGTKIDLRDDEN  121 (171)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence            999999988876 89998888778999999999999976653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04148 RGK RGK subfamily

Probab=99.94  E-value=1.8e-26  Score=168.31  Aligned_cols=127  Identities=28%  Similarity=0.400  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccee-eeeEEEEEECCeEEEEEEEeCCCccccccccccccc-CCcEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL   99 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~   99 (159)
                      +||+++|++|||||||+++|..+.+. ..+.++.+ ..+...+.+++..+.+.+||++|++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 66777765 44466777888889999999999982  22344566 8999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |||++++++|..+.  .|+..+....  .++|+++|+||+|+.+.++++.++++++
T Consensus        79 V~d~td~~S~~~~~--~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~  132 (221)
T cd04148          79 VYSVTDRSSFERAS--ELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC  132 (221)
T ss_pred             EEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH
Confidence            99999999999988  8888887754  5899999999999988888887765544

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01862 Rab7 Rab7 subfamily

Probab=99.94  E-value=2.4e-26  Score=160.68  Aligned_cols=125  Identities=35%  Similarity=0.652  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..++++++++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998877777776555 445677888889999999999999989999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCC-----CCCEEEEeeCcccccCccccccC
Q 044772          102 SLISRPSYENISKKKWVPELRHYAP-----SVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      |++++.+|..+.  .|...+.....     ++|+++|+||+|+...+.++.++
T Consensus        81 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  131 (172)
T cd01862          81 DVTNPKSFESLD--SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK  131 (172)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH
Confidence            999999998887  88877655543     79999999999998655544444

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04123 Rab21 Rab21 subfamily

Probab=99.94  E-value=3.7e-26  Score=157.90  Aligned_cols=125  Identities=35%  Similarity=0.684  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|+|||||+++|+.+.+...+.++....+ ...+...+..+.+.+||++|++.+...+..++++++++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999988776666664444 445666677788999999999999989999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccC
Q 044772          102 SLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      |+++++++..+.  .|++.+..... ++|+++|+||+|+...+++..++
T Consensus        81 d~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~  127 (162)
T cd04123          81 DITDADSFQKVK--KWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSE  127 (162)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccCCCHHH
Confidence            999999999988  89988887764 78999999999998776665443

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04129 Rho2 Rho2 subfamily

Probab=99.94  E-value=6.6e-26  Score=161.31  Aligned_cols=118  Identities=53%  Similarity=0.936  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      .|++++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||++|++.+......++.++++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988888777788777776666778888889999999998888777778899999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ++++++|..+.. .|+..+....+++|+++||||+|+.+
T Consensus        82 i~~~~s~~~~~~-~~~~~i~~~~~~~piilvgnK~Dl~~  119 (187)
T cd04129          82 VDTPDSLENVRT-KWIEEVRRYCPNVPVILVGLKKDLRQ  119 (187)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEeeChhhhh
Confidence            999999999875 79999988778899999999999964

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01863 Rab18 Rab18 subfamily

Probab=99.94  E-value=7.2e-26  Score=156.86  Aligned_cols=116  Identities=37%  Similarity=0.713  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777777776653 45567777889999999999999888899999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLR  140 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~  140 (159)
                      |++++++|..+.  .|+..+..+.  .+.|+++|+||+|+.
T Consensus        81 d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          81 DVTRRDTFTNLE--TWLNELETYSTNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             ECCCHHHHHhHH--HHHHHHHHhCCCCCCcEEEEEECCccc
Confidence            999999999888  8999888775  589999999999997

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01893 Miro1 Miro1 subfamily

Probab=99.93  E-value=2.3e-25  Score=155.56  Aligned_cols=121  Identities=28%  Similarity=0.448  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+++|..+.+...+.++. ..+.....+++..+.+.+||++|.+.+...+..++..++++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999999876644433 3333444556677899999999998887777778899999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772          103 LISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      ++++.+|..+.. .|++.+.....+.|+++|+||+|+.+.+..
T Consensus        80 ~~~~~s~~~~~~-~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~  121 (166)
T cd01893          80 VDRPSTLERIRT-KWLPLIRRLGVKVPIILVGNKSDLRDGSSQ  121 (166)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhcccccch
Confidence            999999999865 798888876678999999999999776553

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00876 Ras Ras family

Probab=99.93  E-value=6.2e-26  Score=156.47  Aligned_cols=129  Identities=37%  Similarity=0.637  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      ||+++|++|||||||++++++..+...+.++.+..+......++..+.+++||++|++.+...+..++..++++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999988888888888766666667777788999999999998888888999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCccc
Q 044772          104 ISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ++++++..+.  .|...+.....  ..|+++|+||+|+...+.++.+++++++
T Consensus        81 ~~~~s~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  131 (160)
T cd00876          81 TDRESFEEIK--GYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA  131 (160)
T ss_pred             CCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH
Confidence            9999999888  77777776654  8999999999999887777666555443

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04114 Rab30 Rab30 subfamily

Probab=99.93  E-value=2.2e-25  Score=155.51  Aligned_cols=129  Identities=32%  Similarity=0.615  Sum_probs=109.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4568999999999999999999998888777777766444 446677888889999999999989888889999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYP  150 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~  150 (159)
                      +|||+.++.+|..+.  .|+..+.... .++|+++|+||+|+...+++..+..
T Consensus        85 ~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~  135 (169)
T cd04114          85 LTYDITCEESFRCLP--EWLREIEQYANNKVITILVGNKIDLAERREVSQQRA  135 (169)
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHH
Confidence            999999999999887  8998887765 3799999999999987777665433

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.93  E-value=1.2e-25  Score=155.67  Aligned_cols=122  Identities=35%  Similarity=0.610  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||++|++.+...+..+++.++++++|||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999998888888877777777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCcccc
Q 044772          103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ++++.+|..+.  .|+..+....  .++|+++|+||+|+.+.+.+.
T Consensus        81 ~~~~~s~~~~~--~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~  124 (164)
T cd04139          81 ITDMESFTATA--EFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS  124 (164)
T ss_pred             CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEccccccccccC
Confidence            99999999988  7877777663  589999999999997644443

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00154 Rab Rab family

Probab=99.93  E-value=1.5e-25  Score=153.65  Aligned_cols=128  Identities=41%  Similarity=0.772  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+..+...+..++++++++++||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887777777666 446666777789999999999999888999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |+++++++..+.  .|+..+.... ...|+++++||+|+...+++..++.+.
T Consensus        81 d~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  130 (159)
T cd00154          81 DITNRESFENLD--KWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQ  130 (159)
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHH
Confidence            999999999988  8999888877 689999999999997555555554433

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.7e-28  Score=163.06  Aligned_cols=134  Identities=36%  Similarity=0.586  Sum_probs=116.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEE---------CCeEEEEEEEeCCCccccccccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMV---------DGRTVNLGLWDTAGQEDYNRLRP   88 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~   88 (159)
                      ....+|++.+|++|||||||++++..++|......|.+..+. +.+-+         .+.++.+++||+.|+++|++...
T Consensus         6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT   85 (219)
T KOG0081|consen    6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT   85 (219)
T ss_pred             HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence            345679999999999999999999999999888888876663 23332         12468899999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCccc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      .+++++-+++++||+++..+|.++.  .|+..+..+  ++++-|+++|||+||++.|+|+.+.+.+.|
T Consensus        86 AFfRDAMGFlLiFDlT~eqSFLnvr--nWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La  151 (219)
T KOG0081|consen   86 AFFRDAMGFLLIFDLTSEQSFLNVR--NWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALA  151 (219)
T ss_pred             HHHHhhccceEEEeccchHHHHHHH--HHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHH
Confidence            9999999999999999999999999  999988755  478889999999999999999998877654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.93  E-value=4.2e-25  Score=155.70  Aligned_cols=116  Identities=20%  Similarity=0.267  Sum_probs=95.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+++|++|||||||++++..+.+. .+.||.+..+. ....  ..+.+++||++|++.+..++..++++++++|+|
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            4689999999999999999999887774 46777765543 2233  347799999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772          101 FSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      ||++++.+|..+.  .|+..+...  .+++|++||+||+|+.+.
T Consensus        88 ~D~t~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl~~~  129 (175)
T smart00177       88 VDSNDRDRIDEAR--EELHRMLNEDELRDAVILVFANKQDLPDA  129 (175)
T ss_pred             EECCCHHHHHHHH--HHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence            9999999999887  666555432  257999999999999754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=99.92  E-value=4e-25  Score=154.86  Aligned_cols=115  Identities=21%  Similarity=0.287  Sum_probs=94.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+++|++|||||||+++|..+.+. .+.||.+..+. ...  ...+.+++||++|++.+...+..++.+++++|+|
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4689999999999999999999987774 45677665443 222  2457899999999999998999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhh-h-CCCCCEEEEeeCccccc
Q 044772          101 FSLISRPSYENISKKKWVPELRH-Y-APSVPIVLVGTKLDLRK  141 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~-~-~~~~piilv~nK~Dl~~  141 (159)
                      ||++++.+|.++.  .|+..+.. . .+++|++||+||+|+.+
T Consensus        84 ~D~t~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          84 VDSADRDRIDEAR--QELHRIINDREMRDALLLVFANKQDLPD  124 (168)
T ss_pred             EeCCchhhHHHHH--HHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence            9999999999887  55555543 2 35799999999999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=2.5e-24  Score=156.31  Aligned_cols=122  Identities=30%  Similarity=0.553  Sum_probs=107.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+|++++|++|||||||+++++.+.+...+.+|.+..+.. .+..++..+.+++||++|++.+...+..++.++++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            44566899999999999999999999999988889998876643 45557778999999999999998888889999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +++|||++++.+|..+.  .|+..+....+++|+++++||+|+.+
T Consensus        85 ~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVP--NWHRDIVRVCENIPIVLVGNKVDVKD  127 (215)
T ss_pred             EEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccCcc
Confidence            99999999999999998  89999887778899999999999864

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.92  E-value=9.3e-25  Score=156.72  Aligned_cols=122  Identities=30%  Similarity=0.453  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      ||+++|++|||||||+++|+.+.+...+.++....+...+.+.+..+.+++||++|+..+..++..++.+++++|+|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999988888887655555667778778999999999999988888999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc-Cccccc
Q 044772          104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK-DRQFHL  147 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~-~r~v~~  147 (159)
                      +++.+|..+.  .|+..+....  .++|++||+||+|+.. .+.+..
T Consensus        81 ~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~  125 (198)
T cd04147          81 DDPESFEEVE--RLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA  125 (198)
T ss_pred             CCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEEccccccccccccH
Confidence            9999999998  8888887765  3799999999999965 455543

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=3.1e-27  Score=155.39  Aligned_cols=129  Identities=32%  Similarity=0.634  Sum_probs=115.3

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           26 VTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        26 ~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      +++|++++|||+|+-|+..+.|. .+...|.+..|.. .+..++..+++++||+.||++|++....|++++|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999998877775 4456677877755 567789999999999999999999999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccccc
Q 044772          104 ISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTIS  156 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~~  156 (159)
                      .+.-+|++.+  .|+.+|+++. +.+.+.++|||||+.-+|.|..++++..|..
T Consensus        81 ankasfdn~~--~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~  132 (192)
T KOG0083|consen   81 ANKASFDNCQ--AWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA  132 (192)
T ss_pred             ccchhHHHHH--HHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHH
Confidence            9999999999  9999999997 5788999999999999999999999886644

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=5.7e-25  Score=155.87  Aligned_cols=117  Identities=18%  Similarity=0.251  Sum_probs=95.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||++++..+.+. .+.||.+..+. .+..  ..+.+++||++|++.+..+|..++++++++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            34589999999999999999999988775 46777765543 2333  34779999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhh--hCCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRH--YAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~--~~~~~piilv~nK~Dl~~~  142 (159)
                      |||++++++|..+.  .++..+..  ..+++|++||+||+|+++.
T Consensus        91 V~D~s~~~s~~~~~--~~l~~~l~~~~~~~~piilv~NK~Dl~~~  133 (181)
T PLN00223         91 VVDSNDRDRVVEAR--DELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
T ss_pred             EEeCCcHHHHHHHH--HHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence            99999999998877  55555532  2257999999999999754

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.92  E-value=5.3e-25  Score=155.34  Aligned_cols=124  Identities=33%  Similarity=0.504  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      .||+++|++|+|||||++++....+...+.++....+......++..+.+.+||++|++.+...+..++..+++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            68999999999999999999999888878888877666667778778889999999999998888899999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCcccccc
Q 044772          103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~  148 (159)
                      +++..+|+.+.  .|+..+....  .+.|+++|+||+|+...+.+..+
T Consensus        82 ~~~~~~~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~  127 (180)
T cd04137          82 VTSRKSFEVVK--VIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTE  127 (180)
T ss_pred             CCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHH
Confidence            99999999998  6666666543  47899999999999866655543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.92  E-value=1.2e-24  Score=152.27  Aligned_cols=114  Identities=19%  Similarity=0.294  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      +|+++|++|||||||+++|.++ +...+.+|.+... ..+..+  .+.+++||++|++.+..++..++++++++|+|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999976 6677788877543 234443  46799999999999999999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772          104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r  143 (159)
                      +++.+|..+.  .|+..+....  .++|++||+||+|+++.+
T Consensus        77 s~~~s~~~~~--~~l~~l~~~~~~~~~piliv~NK~Dl~~~~  116 (167)
T cd04161          77 SDDDRVQEVK--EILRELLQHPRVSGKPILVLANKQDKKNAL  116 (167)
T ss_pred             CchhHHHHHH--HHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence            9999999888  8888776543  479999999999998766

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.92  E-value=6.7e-25  Score=152.37  Aligned_cols=113  Identities=18%  Similarity=0.272  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|.+|||||||++++..+.+. .+.||.+..+. .+..  ..+.+.+||++|++.+...+..++++++++|+|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            48999999999999999999888876 46777765443 2333  35779999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772          103 LISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK  141 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~  141 (159)
                      ++++.+|..+.  .|+..+...  ..+.|++|++||+|+.+
T Consensus        77 ~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~  115 (159)
T cd04150          77 SNDRERIGEAR--EELQRMLNEDELRDAVLLVFANKQDLPN  115 (159)
T ss_pred             CCCHHHHHHHH--HHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence            99999999887  655555432  24789999999999964

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.92  E-value=1.6e-24  Score=143.26  Aligned_cols=115  Identities=34%  Similarity=0.561  Sum_probs=90.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ||+|+|++|||||||+++|++..+.  ..+.+..+..+. ...........+.+||++|++.+...+..++..++++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988876  122333333333 2445566666699999999998888888889999999999


Q ss_pred             EeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcc
Q 044772          101 FSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLD  138 (159)
Q Consensus       101 ~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~D  138 (159)
                      ||++++++|+.+.. ..|+..+.....++|++|||||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999998753 257888887777899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04158 ARD1 ARD1 subfamily

Probab=99.92  E-value=8e-25  Score=153.30  Aligned_cols=112  Identities=18%  Similarity=0.291  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      ||+++|++|||||||+++|.++.+.. +.+|.+..+. .+..  ..+.+.+||++|++.+...+..++.+++++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999887654 6777665443 2333  346799999999999998999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772          104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK  141 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~  141 (159)
                      +++++|.++.  .|+..+....  .+.|++||+||+|+.+
T Consensus        77 s~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~  114 (169)
T cd04158          77 SHRDRVSEAH--SELAKLLTEKELRDALLLIFANKQDVAG  114 (169)
T ss_pred             CcHHHHHHHH--HHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence            9999999987  7777776432  4689999999999964

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=1.8e-24  Score=153.45  Aligned_cols=116  Identities=20%  Similarity=0.281  Sum_probs=94.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ...+||+++|++|||||||++++..+.+.. +.||.+..+. .+..  ..+.+++||++|++.+..++..++++++++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            345899999999999999999998887764 5677765543 2333  44779999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK  141 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~  141 (159)
                      |||++++++|..+.  .++..+...  ..++|++||+||+|+.+
T Consensus        91 v~D~t~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl~~  132 (182)
T PTZ00133         91 VVDSNDRERIGDAR--EELERMLSEDELRDAVLLVFANKQDLPN  132 (182)
T ss_pred             EEeCCCHHHHHHHH--HHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence            99999999999887  555544322  24789999999999965

>cd04157 Arl6 Arl6 subfamily

Probab=99.91  E-value=4.3e-24  Score=147.84  Aligned_cols=114  Identities=21%  Similarity=0.257  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT-FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +|+++|++|||||||+++|.+.. +...+.+|.+.... ..  ....+.+.+||+||++.+..++..++++++++|+|||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            58999999999999999999876 35567777764332 12  2335679999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhh----CCCCCEEEEeeCcccccC
Q 044772          103 LISRPSYENISKKKWVPELRHY----APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~  142 (159)
                      ++++.+|..+.  .|+..+...    ..++|+++|+||+|+.+.
T Consensus        78 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          78 SSDRLRLVVVK--DELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             CCcHHHHHHHH--HHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence            99999998877  777766543    147999999999999754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04154 Arl2 Arl2 subfamily

Probab=99.91  E-value=1.2e-23  Score=147.81  Aligned_cols=118  Identities=17%  Similarity=0.275  Sum_probs=95.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ....+||+++|++|||||||+++|.+..+ ..+.+|.+... ..+..+  .+.+.+||++|++.+..++..++.++++++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            34568999999999999999999997754 45566665332 233444  367999999999998888899999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      +|||++++.+|....  .|+..+...  ..+.|++||+||+|+.+.
T Consensus        87 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (173)
T cd04154          87 WVVDSSDRLRLDDCK--RELKELLQEERLAGATLLILANKQDLPGA  130 (173)
T ss_pred             EEEECCCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence            999999999998887  676666432  258999999999999754

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.91  E-value=1.4e-23  Score=148.89  Aligned_cols=118  Identities=22%  Similarity=0.343  Sum_probs=96.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEE-CCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      +.+||+++|++|||||||++++..+.+... .+|.+... ...+.. ++..+.+.+||++|++.+..++..+++++++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            358999999999999999999998887654 56655443 223333 345688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK  141 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~  141 (159)
                      +|||++++.++..+.  .|+..+....  .+.|++||+||+|+.+
T Consensus        81 ~v~D~~~~~~~~~~~--~~~~~i~~~~~~~~~p~iiv~NK~D~~~  123 (183)
T cd04152          81 FVVDSVDVERMEEAK--TELHKITRFSENQGVPVLVLANKQDLPN  123 (183)
T ss_pred             EEEECCCHHHHHHHH--HHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence            999999999998887  7777766543  4799999999999864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.90  E-value=3e-23  Score=150.59  Aligned_cols=124  Identities=41%  Similarity=0.696  Sum_probs=107.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|++|||||||+++|..+.+...+.++.+..+.. ........+++.+||++|++.+..++..|+.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            3899999999999999999999999999999998877754 334444478899999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCcccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ||..+..++.++.. .|.+.+.... .+.|+++++||+|+...+...
T Consensus        85 ~d~~~~~~~~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~  130 (219)
T COG1100          85 YDSTLRESSDELTE-EWLEELRELAPDDVPILLVGNKIDLFDEQSSS  130 (219)
T ss_pred             EecccchhhhHHHH-HHHHHHHHhCCCCceEEEEecccccccchhHH
Confidence            99999667766666 9999998888 479999999999998875433

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.90  E-value=6e-23  Score=142.02  Aligned_cols=113  Identities=21%  Similarity=0.317  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      +|+++|++|||||||+++|.++.+.. +.+|.+..+. .+.. +..+.+.+||++|++.+...+..++.+++++|+|||+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            58999999999999999999988764 3566654432 2333 3447899999999999988888999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772          104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK  141 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~  141 (159)
                      +++.++..+.  .|+..+....  .+.|+++|+||+|+..
T Consensus        78 ~~~~~~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~  115 (160)
T cd04156          78 SDEARLDESQ--KELKHILKNEHIKGVPVVLLANKQDLPG  115 (160)
T ss_pred             CcHHHHHHHH--HHHHHHHhchhhcCCCEEEEEECccccc
Confidence            9999998887  6666655432  5899999999999964

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.90  E-value=4.9e-23  Score=144.92  Aligned_cols=115  Identities=20%  Similarity=0.279  Sum_probs=93.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+++|++|+|||||++++..+.+.. +.++.+..+. ....+  .+.+.+||++|++.+...+..++.+++++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            35899999999999999999999888764 4666665543 23333  46799999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK  141 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~  141 (159)
                      ||++++++|....  .++..+....  .++|+++++||+|+.+
T Consensus        90 ~D~s~~~~~~~~~--~~l~~~~~~~~~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          90 IDSTDRERLPLTK--EELYKMLAHEDLRKAVLLVLANKQDLKG  130 (174)
T ss_pred             EECCCHHHHHHHH--HHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence            9999999998877  5555554332  5799999999999865

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-25  Score=153.03  Aligned_cols=135  Identities=33%  Similarity=0.512  Sum_probs=122.4

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      ..-...+|++++|..+|||||++++++.+-|...|..+++..+. ..+.+++..+.+.+||++|++.|....+.|++++.
T Consensus        15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq   94 (246)
T KOG4252|consen   15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ   94 (246)
T ss_pred             hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence            34567899999999999999999999999999999999988774 35566666677889999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCcc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +.++||+.+|+.+|+...  .|.+.+..-.+.+|.++|-||+||.++.++..++.+..
T Consensus        95 a~vLVFSTTDr~SFea~~--~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~l  150 (246)
T KOG4252|consen   95 ASVLVFSTTDRYSFEATL--EWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGL  150 (246)
T ss_pred             ceEEEEecccHHHHHHHH--HHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHH
Confidence            999999999999999999  99999999889999999999999999999998877654

>cd04151 Arl1 Arl1 subfamily

Probab=99.89  E-value=7.1e-23  Score=141.71  Aligned_cols=114  Identities=17%  Similarity=0.243  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      ||+++|++++|||||++++..+.+. .+.+|.+..+. .+..  ..+.+++||++|++.+..++..++..++++|+|||+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            6899999999999999999877765 34566654432 2233  346799999999999999999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCcccccC
Q 044772          104 ISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~  142 (159)
                      +++.++..... .|...+... ..+.|+++|+||+|+.+.
T Consensus        77 ~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          77 TDRDRLGTAKE-ELHAMLEEEELKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             CCHHHHHHHHH-HHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence            99988877663 344333322 247999999999999753

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.89  E-value=9.1e-23  Score=143.88  Aligned_cols=118  Identities=25%  Similarity=0.368  Sum_probs=95.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ..+.+||+++|+.|+|||||++++..+.+. ...||.+.... .+..++  +.+.+||++|+..+...|+.|+.+++++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~-~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE-EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE-EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc-eeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            468899999999999999999999976653 35666654432 334444  56899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      ||+|.++++.+.+..  ..+..+...  ..+.|++|++||+|+++.
T Consensus        87 fVvDssd~~~l~e~~--~~L~~ll~~~~~~~~piLIl~NK~D~~~~  130 (175)
T PF00025_consen   87 FVVDSSDPERLQEAK--EELKELLNDPELKDIPILILANKQDLPDA  130 (175)
T ss_dssp             EEEETTGGGGHHHHH--HHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred             EEEecccceeecccc--cchhhhcchhhcccceEEEEeccccccCc
Confidence            999999999998887  444444432  258999999999998753

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.89  E-value=1.5e-22  Score=143.75  Aligned_cols=116  Identities=16%  Similarity=0.267  Sum_probs=92.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.++|+++|++|||||||++++.++.+. .+.+|.+... ..+..+  .+++.+||++|++.+...+..++.+++++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            56699999999999999999999988764 3445544322 223333  3678999999999998899999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK  141 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~  141 (159)
                      |+|++++.++....  .++..+...  ..+.|+++|+||+|++.
T Consensus        91 vvD~~~~~~~~~~~--~~l~~l~~~~~~~~~piliv~NK~Dl~~  132 (184)
T smart00178       91 LVDAYDKERFAESK--RELDALLSDEELATVPFLILGNKIDAPY  132 (184)
T ss_pred             EEECCcHHHHHHHH--HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence            99999999998887  566655543  25789999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.89  E-value=1.7e-22  Score=139.62  Aligned_cols=114  Identities=21%  Similarity=0.307  Sum_probs=92.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      ||+++|.+|||||||++++.++.+ ..+.++.+.... .+.++  .+.+.+||+||++.+...+..++.+++++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999998874 344555554332 23333  46799999999999988999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772          104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r  143 (159)
                      +++.++..+.  .|+..+....  .+.|+++|+||+|+...+
T Consensus        77 ~~~~~~~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~~~~~  116 (158)
T cd00878          77 SDRERIEEAK--EELHKLLNEEELKGVPLLIFANKQDLPGAL  116 (158)
T ss_pred             CCHHHHHHHH--HHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence            9999999887  6776665543  589999999999997644

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.89  E-value=3.1e-22  Score=137.32  Aligned_cols=115  Identities=25%  Similarity=0.383  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      .|+++|++|||||||+++|.+.++...+.++.+..+.. +..++  +.+.+||++|++.+...+..++.+++++++|+|+
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            37999999999999999999999988888887765542 33333  6799999999999999999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772          104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r  143 (159)
                      +++.++....  .|+..+....  .++|+++|+||+|+....
T Consensus        78 ~~~~~~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  117 (159)
T cd04159          78 ADRTALEAAK--NELHDLLEKPSLEGIPLLVLGNKNDLPGAL  117 (159)
T ss_pred             CCHHHHHHHH--HHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence            9998888776  5555554322  578999999999987654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd00879 Sar1 Sar1 subfamily

Probab=99.88  E-value=7.2e-22  Score=140.52  Aligned_cols=116  Identities=20%  Similarity=0.307  Sum_probs=93.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||++++.++.+. .+.+|.+... ..+.+++  ..+.+||++|++.+...+..+++.++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35789999999999999999999988764 4566665433 2344454  568999999999888888899999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK  141 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~  141 (159)
                      |+|+.++.+|....  .|+..+....  .+.|++|++||+|+.+
T Consensus        93 V~D~~~~~s~~~~~--~~~~~i~~~~~~~~~pvivv~NK~Dl~~  134 (190)
T cd00879          93 LVDAADPERFQESK--EELDSLLSDEELANVPFLILGNKIDLPG  134 (190)
T ss_pred             EEECCcHHHHHHHH--HHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence            99999999998777  6666665433  4799999999999863

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.88  E-value=5.4e-22  Score=138.14  Aligned_cols=114  Identities=23%  Similarity=0.338  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF------PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      +|+++|++|+|||||+++|.....      ...+.+|.+..+. .+..+  ...+.+||++|++.+..++..++..++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999976432      2234445544442 23344  46799999999999998889999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~  142 (159)
                      ++|+|..+++++....  .|+..+....  .+.|++|++||+|+...
T Consensus        78 v~vvd~~~~~~~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          78 IYVIDSTDRERFEESK--SALEKVLRNEALEGVPLLILANKQDLPDA  122 (167)
T ss_pred             EEEEECchHHHHHHHH--HHHHHHHhChhhcCCCEEEEEEccccccC
Confidence            9999999988888877  6776665542  47999999999998653

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=4.6e-22  Score=137.59  Aligned_cols=124  Identities=22%  Similarity=0.279  Sum_probs=102.8

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      .....+..+|+++|..++||||++++|..+++... .||++.+.. .+.+.  .+.+.+||.+|+++++..|++|+.+.+
T Consensus        11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~   86 (181)
T KOG0070|consen   11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQ   86 (181)
T ss_pred             hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCc
Confidence            34567889999999999999999999998887655 888886654 23344  467999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCcc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~  144 (159)
                      ++|||+|.+|++.+.++.. .+...+.... ...|+++++||.|+++.-.
T Consensus        87 ~lIfVvDS~Dr~Ri~eak~-eL~~~l~~~~l~~~~llv~aNKqD~~~als  135 (181)
T KOG0070|consen   87 GLIFVVDSSDRERIEEAKE-ELHRMLAEPELRNAPLLVFANKQDLPGALS  135 (181)
T ss_pred             EEEEEEeCCcHHHHHHHHH-HHHHHHcCcccCCceEEEEechhhccccCC
Confidence            9999999999999999885 5544444433 5899999999999986544

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-21  Score=131.79  Aligned_cols=134  Identities=28%  Similarity=0.386  Sum_probs=112.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcccc-cccccccccCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVD-GRTVNLGLWDTAGQEDY-NRLRPLSYRGAD   95 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~   95 (159)
                      .+..|++++|..++|||+|+.+++.+...  ..+.||+++.|...+..+ +.+-.+.++||.|-... ..+-++|+.-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            35679999999999999999999966654  457889999997766654 45667999999997665 445678999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      ++++||+..|++||+.+.  .+...|.+..  ..+||++++||+|+.+.++|..+-+..||-
T Consensus        87 afVLVYs~~d~eSf~rv~--llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~  146 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVE--LLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK  146 (198)
T ss_pred             eEEEEecCCCHHHHHHHH--HHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh
Confidence            999999999999999887  6666666655  479999999999999999999998888774

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.86  E-value=3.2e-21  Score=130.76  Aligned_cols=117  Identities=16%  Similarity=0.267  Sum_probs=90.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ..+.++|+++|..|+|||+++++|.+.. .+...||.+.... .+  ....+.+++||.+|+-.+++.|++||..+|++|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-tl--~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-TL--EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-EE--EecceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            4568999999999999999999998766 3344555543222 22  334477999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCcccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLR  140 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~  140 (159)
                      +|+|.+|+..|++... .+-+.+..- ....|++|++||.|++
T Consensus        89 wvvDssD~~r~~e~~~-~L~~lL~eerlaG~~~Lvlank~dl~  130 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQ-ELTELLVEERLAGAPLLVLANKQDLP  130 (185)
T ss_pred             EEEECchHHHHHHHHH-HHHHHHhhhhhcCCceEEEEecCcCc
Confidence            9999999999987663 222222221 1368999999999997

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=5.5e-21  Score=137.79  Aligned_cols=118  Identities=11%  Similarity=0.205  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCC-cEEEEEEe
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS  102 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~d  102 (159)
                      +|+++|++|||||||+++|..+.+...+.++............+....+.+||+||++.+...+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988876654442221121111123456799999999999988888889998 99999999


Q ss_pred             CCCh-hhHHhhhhhhHHHHHh----hhCCCCCEEEEeeCcccccCc
Q 044772          103 LISR-PSYENISKKKWVPELR----HYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       103 ~~~~-~s~~~~~~~~~~~~i~----~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +.+. .++..+.  .|+..+.    ....++|++|++||+|+...+
T Consensus        82 ~~~~~~~~~~~~--~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~  125 (203)
T cd04105          82 SATFQKNLKDVA--EFLYDILTDLEKVKNKIPVLIACNKQDLFTAK  125 (203)
T ss_pred             CccchhHHHHHH--HHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence            9987 6677665  4433332    223589999999999987543

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.85  E-value=1.9e-20  Score=127.79  Aligned_cols=120  Identities=42%  Similarity=0.608  Sum_probs=96.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|.+|+|||||++++....+...+.++.+..+.. .+..++..+.+.+||++|+..+..++..+++.+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            3799999999999999999999988776766666655533 455666668899999999998888888889999999999


Q ss_pred             EeCCCh-hhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccC
Q 044772          101 FSLISR-PSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKD  142 (159)
Q Consensus       101 ~d~~~~-~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~  142 (159)
                      +|.... .++..... .|...+..... +.|+++++||+|+...
T Consensus        81 ~d~~~~v~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        81 FDIVILVLDVEEILE-KQTKEIIHHAESNVPIILVGNKIDLRDA  123 (161)
T ss_pred             EEEeeeehhhhhHhH-HHHHHHHHhcccCCcEEEEEEcccCCcc
Confidence            998876 56655443 56666665554 8999999999999764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.84  E-value=2.6e-20  Score=130.44  Aligned_cols=117  Identities=21%  Similarity=0.310  Sum_probs=91.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.++|+++|++|+|||||++++.+..+. .+.++.+... ..+..++  ..+.+||++|+..+...+..++..++++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            45799999999999999999999987653 3455555332 2334444  568999999998888888889999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~  142 (159)
                      |||+.+..++....  .|+..+....  .++|+++++||+|+.+.
T Consensus        88 v~D~~~~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (173)
T cd04155          88 VIDSADKKRLEEAG--AELVELLEEEKLAGVPVLVFANKQDLATA  130 (173)
T ss_pred             EEeCCCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence            99999988888776  5554443322  47999999999998654

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3e-20  Score=123.23  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=96.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .++++|+++|..++||||++.+|.-+.. ....||.+.... .+.+.+  +++++||.+|+++.+..|++||....++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve-tVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE-EEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            4588999999999999999999986664 344566664332 334444  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v  145 (159)
                      |.|..+.+..+++.. ++..-|.... ++.|++|++||.|+++.+.+
T Consensus        91 V~Dsa~~dr~eeAr~-ELh~ii~~~em~~~~~LvlANkQDlp~A~~p  136 (180)
T KOG0071|consen   91 VVDSADRDRIEEARN-ELHRIINDREMRDAIILILANKQDLPDAMKP  136 (180)
T ss_pred             EEeccchhhHHHHHH-HHHHHhCCHhhhcceEEEEecCcccccccCH
Confidence            999999888887775 5555444333 58999999999999986654

>cd01890 LepA LepA subfamily

Probab=99.83  E-value=4.2e-20  Score=130.03  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=83.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------CCCCcccce------eeeeE-E--EEEE---CCeEEEEEEEeCCCccccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT-------FPTDYVPTV------FDNFS-A--NVMV---DGRTVNLGLWDTAGQEDYN   84 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~~~-~--~~~~---~~~~~~~~i~D~~g~~~~~   84 (159)
                      +|+++|++++|||||+++|++..       +...+.++.      +..+. .  ...+   ++..+.+++||++|++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998742       222222222      11111 1  1222   5567889999999999998


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ..+..++..+|++|+|||+++..++....  .|.....   .++|+++|+||+|+.+.
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~--~~~~~~~---~~~~iiiv~NK~Dl~~~  134 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLA--NFYLALE---NNLEIIPVINKIDLPSA  134 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHH--HHHHHHH---cCCCEEEEEECCCCCcC
Confidence            88888999999999999999877666655  4443222   46899999999998653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PTZ00099 rab6; Provisional

Probab=99.82  E-value=3.9e-20  Score=130.59  Aligned_cols=107  Identities=34%  Similarity=0.547  Sum_probs=92.5

Q ss_pred             CCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhh
Q 044772           45 NTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRH  123 (159)
Q Consensus        45 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~  123 (159)
                      +.|.+.|.+|.+..+ ...+.+++..+.+.|||++|++.+..++..++++++++|+|||++++.+|..+.  .|+..+..
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~--~w~~~i~~   80 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT--KWIQDILN   80 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH--HHHHHHHH
Confidence            467788899998776 456778888999999999999999999999999999999999999999999997  89998876


Q ss_pred             hC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          124 YA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       124 ~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      .. +.+|++|||||+||.+.+.++.+++..+
T Consensus        81 ~~~~~~piilVgNK~DL~~~~~v~~~e~~~~  111 (176)
T PTZ00099         81 ERGKDVIIALVGNKTDLGDLRKVTYEEGMQK  111 (176)
T ss_pred             hcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence            54 5789999999999988787876665443

>cd01898 Obg Obg subfamily

Probab=99.82  E-value=1.2e-19  Score=126.55  Aligned_cols=118  Identities=20%  Similarity=0.196  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-cc-cceeeeeEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTD-YV-PTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRPLS---YRGA   94 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~   94 (159)
                      +|+++|++|||||||+++|.+...... +. .+.... ...+..++ ...+.+||+||...    ...+...+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~-~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN-LGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc-ceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            689999999999999999997654211 11 111111 11222233 24699999999632    12222333   3469


Q ss_pred             cEEEEEEeCCCh-hhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccc
Q 044772           95 DVFILAFSLISR-PSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        95 ~~~i~v~d~~~~-~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v  145 (159)
                      +++++|+|++++ .++..+.  .|++.+....   .+.|+++|+||+|+.+.+.+
T Consensus        80 d~vi~v~D~~~~~~~~~~~~--~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~  132 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYK--TIRNELELYNPELLEKPRIVVLNKIDLLDEEEL  132 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHH--HHHHHHHHhCccccccccEEEEEchhcCCchhh
Confidence            999999999998 7888887  8888877664   36899999999999765443

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.82  E-value=2.7e-19  Score=124.56  Aligned_cols=120  Identities=19%  Similarity=0.154  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCccccccccc---------cccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRP---------LSYR   92 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---------~~~~   92 (159)
                      .+|+++|++|+|||||+++|.+..+... +..+........  .....+.+.+||+||+.......+         ....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            3799999999999999999998876422 211111111111  222346799999999743211001         0112


Q ss_pred             CCcEEEEEEeCCChhhH--HhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           93 GADVFILAFSLISRPSY--ENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      .++++++|+|++++.++  ....  .|+..+.....+.|+++|+||+|+.+.+.+.
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~--~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~  132 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQL--SLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS  132 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHH--HHHHHHHhhcCcCCeEEEEEccccCchhhHH
Confidence            35899999999987664  3333  7888877665689999999999997665544

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.81  E-value=1.4e-19  Score=129.49  Aligned_cols=117  Identities=16%  Similarity=0.127  Sum_probs=83.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc--CCCCCCcc------------cceeeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYV------------PTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL   86 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   86 (159)
                      ..+|+++|.+++|||||+++|+.  +.+...+.            .+.+... .....+....+.+.+||++|++.|...
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence            35899999999999999999997  55544321            1122222 222334444577999999999999998


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +..+++++|++++|||+.+.. +....  .|+..+..  .++|+++|+||+|+.+.+
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~  133 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQTR--FVLKKALE--LGLKPIVVINKIDRPDAR  133 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHHH--HHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence            899999999999999998742 22222  34443332  368999999999996544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.81  E-value=2.3e-20  Score=126.83  Aligned_cols=96  Identities=25%  Similarity=0.269  Sum_probs=70.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCCcEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI   98 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~i   98 (159)
                      ||+++|++|||||||+++|.++.+.  +.+|.+..      ...     .+||++|+.     .+.... ..++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEEE
Confidence            8999999999999999999987652  33333221      111     689999972     233332 3478999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +|||++++.++...   .|...+     ..|+++|+||+|+.+
T Consensus        68 lv~d~~~~~s~~~~---~~~~~~-----~~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        68 LVQSATDPESRFPP---GFASIF-----VKPVIGLVTKIDLAE  102 (142)
T ss_pred             EEecCCCCCcCCCh---hHHHhc-----cCCeEEEEEeeccCC
Confidence            99999999988652   555432     239999999999964

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.81  E-value=2.3e-20  Score=124.69  Aligned_cols=117  Identities=22%  Similarity=0.333  Sum_probs=98.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ....+.++|..++|||||++.+..+.+.....||.+.+..+   +....+.+.+||+||+..|+.+|..|++.++++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            35679999999999999999999888888888888765543   344446799999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK  141 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  141 (159)
                      +|..+++.+..... ++...+.+.. .++|++++|||.|+++
T Consensus        96 VDaad~~k~~~sr~-EL~~LL~k~~l~gip~LVLGnK~d~~~  136 (186)
T KOG0075|consen   96 VDAADPDKLEASRS-ELHDLLDKPSLTGIPLLVLGNKIDLPG  136 (186)
T ss_pred             eecCCcccchhhHH-HHHHHhcchhhcCCcEEEecccccCcc
Confidence            99999988876664 5555555544 5899999999999975

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.80  E-value=9e-19  Score=118.20  Aligned_cols=115  Identities=44%  Similarity=0.820  Sum_probs=90.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC
Q 044772           27 TVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS  105 (159)
Q Consensus        27 vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~  105 (159)
                      ++|++|+|||||++++.+... ...+.++....+............+.+||++|...+...+..+++.++++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998876 4455555533334455556667889999999998888777888999999999999999


Q ss_pred             hhhHHhhhhhhH--HHHHhhhCCCCCEEEEeeCcccccCc
Q 044772          106 RPSYENISKKKW--VPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       106 ~~s~~~~~~~~~--~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +.++....  .|  .........+.|+++++||+|+....
T Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~  118 (157)
T cd00882          81 RESFENVK--EWLLLILINKEGENIPIILVGNKIDLPEER  118 (157)
T ss_pred             HHHHHHHH--HHHHHHHHhhccCCCcEEEEEecccccccc
Confidence            99888887  54  33333344689999999999986543

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01878 HflX HflX subfamily

Probab=99.79  E-value=6.6e-19  Score=126.74  Aligned_cols=121  Identities=19%  Similarity=0.195  Sum_probs=83.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC--cccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------ccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD--YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRP   88 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~   88 (159)
                      ...++|+++|++|||||||++++.+..+...  +.++.... ...+..++. ..+.+||++|....         ...+ 
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT-TRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce-eEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            3457999999999999999999998864322  22333222 223333332 26899999997321         1111 


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v  145 (159)
                      ..+.++|++++|+|++++.++....  .|.+.+.... .+.|+++|+||+|+......
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~--~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~  171 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIE--TVEKVLKELGAEDIPMILVLNKIDLLDDEEL  171 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHH--HHHHHHHHcCcCCCCEEEEEEccccCChHHH
Confidence            1356899999999999988887765  6666665543 46899999999999765543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.79  E-value=5.1e-19  Score=119.32  Aligned_cols=120  Identities=27%  Similarity=0.555  Sum_probs=108.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||-++|++..|||||+-++.++.+.+.+..+.+.++ .+.+.+.+..+.+.+||.+|++++..+....++++-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            566789999999999999999999999998888888888887 5688889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      ++|+||.+++.+++.+.  .|+...+..+...--|+||+|.|+
T Consensus        96 IlFmFDLt~r~TLnSi~--~WY~QAr~~NktAiPilvGTKyD~  136 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIK--EWYRQARGLNKTAIPILVGTKYDL  136 (205)
T ss_pred             EEEEEecCchHHHHHHH--HHHHHHhccCCccceEEeccchHh
Confidence            99999999999999999  999999888765445788999996

>cd04171 SelB SelB subfamily

Probab=99.79  E-value=1.1e-18  Score=120.73  Aligned_cols=110  Identities=23%  Similarity=0.214  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC---CCCCccc--ceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT---FPTDYVP--TVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      .|+++|++|||||||+++|.+..   +...+.+  |....+. .....+ ...+.+||+||++.+......++.++|+++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFA-YLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeE-EEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            58999999999999999998642   3222222  2232222 233332 347999999999888766667788999999


Q ss_pred             EEEeCCCh---hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           99 LAFSLISR---PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        99 ~v~d~~~~---~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +|+|+++.   +++..+      ..+.. ....|+++++||+|+...
T Consensus        80 ~V~d~~~~~~~~~~~~~------~~~~~-~~~~~~ilv~NK~Dl~~~  119 (164)
T cd04171          80 LVVAADEGIMPQTREHL------EILEL-LGIKRGLVVLTKADLVDE  119 (164)
T ss_pred             EEEECCCCccHhHHHHH------HHHHH-hCCCcEEEEEECccccCH
Confidence            99999863   232222      11111 123499999999999754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.79  E-value=1.3e-18  Score=121.00  Aligned_cols=113  Identities=17%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .|+++|++|+|||||+++|..+.+...+.++..... ...+..+ .....+.+||+||++.+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999998887655333332222 1222332 23567999999999888888888899999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |+++.......   ..+..+..  .+.|+++|+||+|+.+
T Consensus        82 d~~~~~~~~~~---~~~~~~~~--~~~p~ivv~NK~Dl~~  116 (168)
T cd01887          82 AADDGVMPQTI---EAIKLAKA--ANVPFIVALNKIDKPN  116 (168)
T ss_pred             ECCCCccHHHH---HHHHHHHH--cCCCEEEEEEceeccc
Confidence            99874322211   11222222  3689999999999864

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.6e-18  Score=119.33  Aligned_cols=120  Identities=30%  Similarity=0.486  Sum_probs=108.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...++++++|..|.|||+++.+.+.+.|..+|.+|.+......+...+ ..+.+..||+.|++.+.....-|+-....+|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            457899999999999999999999999999999999887765444443 3599999999999999999999998999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ++||+.++-++..+.  +|...+.+.++++||++.|||.|...
T Consensus        88 imFdVtsr~t~~n~~--rwhrd~~rv~~NiPiv~cGNKvDi~~  128 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVP--RWHRDLVRVRENIPIVLCGNKVDIKA  128 (216)
T ss_pred             EEeeeeehhhhhcch--HHHHHHHHHhcCCCeeeeccceeccc
Confidence            999999999999999  99999999999999999999999853

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.77  E-value=5.4e-18  Score=134.64  Aligned_cols=115  Identities=23%  Similarity=0.283  Sum_probs=85.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PL   89 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~   89 (159)
                      ...+||+++|++|||||||+|+|++..  +...+.++..+.....+.+++.  .+.+|||+|...+...+        ..
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            456899999999999999999999875  3455555554444556666664  47899999986544322        35


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +++++|++++|||++++.++...    |+..+..  .+.|+++|+||+|+.+.
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~----~l~~~~~--~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF----LIIDLNK--SKKPFILVLNKIDLKIN  325 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH----HHHHHhh--CCCCEEEEEECccCCCc
Confidence            77899999999999988776532    5554432  36899999999999653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.76  E-value=4e-18  Score=131.92  Aligned_cols=121  Identities=20%  Similarity=0.190  Sum_probs=85.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-C-cccceeeeeEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPT-D-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQE---------DYNRLRPL   89 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~   89 (159)
                      ..++|+++|.+|+|||||+|+|.+..+.. + +.+|... ....+.+.+. ..+.+|||+|..         .|...+ .
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~-~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDP-TTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCC-EEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            34899999999999999999999876532 2 2333333 3344555322 368999999972         222221 2


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCcccc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~  146 (159)
                      .+.++|++++|+|++++.++..+.  .|...+.... .+.|+++|+||+|+...+.+.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~--~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~  320 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIE--AVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE  320 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHH--HHHHHHHHhccCCCCEEEEEEeecCCChHhHH
Confidence            477899999999999988877765  5555555443 478999999999997654443

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.76  E-value=5.7e-18  Score=116.53  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=77.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCccc-ceeeeeEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCCcEE
Q 044772           27 TVRDGAVGKTCLLISYTGNTFPTDYVP-TVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF   97 (159)
Q Consensus        27 vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~   97 (159)
                      ++|.+|+|||||++++.+..+...+.+ +........+..++  ..+.+|||||+..+...      ...++  +.++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998764433223 22222234455555  46899999998766542      34555  489999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ++|+|..+++...     .|+..+..  .+.|+++|+||+|+.+.+.+.
T Consensus        79 i~v~d~~~~~~~~-----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~  120 (158)
T cd01879          79 VNVVDATNLERNL-----YLTLQLLE--LGLPVVVALNMIDEAEKRGIK  120 (158)
T ss_pred             EEEeeCCcchhHH-----HHHHHHHH--cCCCEEEEEehhhhcccccch
Confidence            9999998754432     44444433  368999999999997665443

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=4.1e-18  Score=131.01  Aligned_cols=120  Identities=20%  Similarity=0.188  Sum_probs=84.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCCc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRL---RPLSYRGAD   95 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~   95 (159)
                      .|.|||.|+||||||+++|.+.+.. ..|..|+-.-....+.+. ....+.+||+||.-.    ...+   +...+..++
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~  238 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  238 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence            5999999999999999999975532 233333222222233332 223589999999632    1112   233466899


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCcccccCcccc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~r~v~  146 (159)
                      ++|+|+|+++.++++.+.  .|..++..+.+   +.|++||+||+|+.+.+.+.
T Consensus       239 vlI~ViD~s~~~s~e~~~--~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~  290 (335)
T PRK12299        239 LLLHLVDIEAVDPVEDYK--TIRNELEKYSPELADKPRILVLNKIDLLDEEEER  290 (335)
T ss_pred             EEEEEEcCCCCCCHHHHH--HHHHHHHHhhhhcccCCeEEEEECcccCCchhHH
Confidence            999999999887888887  89888887753   78999999999997655443

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.75  E-value=9.5e-18  Score=133.69  Aligned_cols=116  Identities=25%  Similarity=0.283  Sum_probs=85.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL--------RPLS   90 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   90 (159)
                      ..++|+++|.+|+|||||+|+|.+...  ......+..+.....+..++  ..+.+|||+|...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            447999999999999999999998763  34444444444444555655  45899999998654432        2236


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      +.++|++++|||++++.++....  .|..     ..+.|+++|+||+|+...+.+
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~--~l~~-----~~~~piiiV~NK~DL~~~~~~  339 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDE--ILEE-----LKDKPVIVVLNKADLTGEIDL  339 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHH--HHHh-----cCCCCcEEEEEhhhccccchh
Confidence            78899999999999888777543  4433     347899999999999765544

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.75  E-value=1.1e-17  Score=111.36  Aligned_cols=117  Identities=25%  Similarity=0.340  Sum_probs=94.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|..++|||||+..|..... ....||.+.... .+..++. +.+++||++|+...+..|..||.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k-~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTK-KVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceE-EEeecCc-EEEEEEecCCccccchhhhhhhhccceEEE
Confidence            6889999999999999999999986554 445667665544 3444443 689999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR  140 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~  140 (159)
                      |+|.+|...|+++.. .+.+.+..-. ..+|+.+.+||.|+.
T Consensus        92 VIDS~D~krfeE~~~-el~ELleeeKl~~vpvlIfankQdll  132 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISE-ELVELLEEEKLAEVPVLIFANKQDLL  132 (185)
T ss_pred             EEeCCchHhHHHHHH-HHHHHhhhhhhhccceeehhhhhHHH
Confidence            999999999998875 4444333322 479999999999974

>PRK04213 GTP-binding protein; Provisional

Probab=99.75  E-value=3.1e-18  Score=122.93  Aligned_cols=116  Identities=22%  Similarity=0.150  Sum_probs=73.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG-----------QEDYNRLRP   88 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~   88 (159)
                      ...++|+++|++|||||||+++|.+..+...+.++.... ......+    .+.+||++|           ++.+...+.
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            456899999999999999999999887665444433211 1122222    489999999           455555555


Q ss_pred             cccc----CCcEEEEEEeCCChhhHHh---------hhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           89 LSYR----GADVFILAFSLISRPSYEN---------ISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        89 ~~~~----~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      .++.    .++++++|+|..+...+..         ... .++..+..  .++|+++|+||+|+.+.+
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~  146 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDV-EMFDFLRE--LGIPPIVAVNKMDKIKNR  146 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHH-HHHHHHHH--cCCCeEEEEECccccCcH
Confidence            5543    3567778887654221100         000 11222222  379999999999996543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=1.3e-17  Score=133.80  Aligned_cols=113  Identities=22%  Similarity=0.282  Sum_probs=79.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccc-eeeeeEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPT-VFDNFSANVMVDGRTVNLGLWDTAGQED--------YNRLRPLSY   91 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   91 (159)
                      ..+|+|+|.+|||||||+++|++.... ....+. ..+........++.  .+.+|||+|.+.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            468999999999999999999987642 122222 22222334444554  488999999763        223345578


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +.+|++|+|||+++..++...   .|...+..  .+.|+++|+||+|+.+
T Consensus       116 ~~aD~il~VvD~~~~~s~~~~---~i~~~l~~--~~~piilV~NK~Dl~~  160 (472)
T PRK03003        116 RTADAVLFVVDATVGATATDE---AVARVLRR--SGKPVILAANKVDDER  160 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccCCc
Confidence            899999999999987665432   44444443  4689999999999864

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.75  E-value=8.7e-18  Score=117.54  Aligned_cols=117  Identities=22%  Similarity=0.237  Sum_probs=78.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCCcEEE
Q 044772           27 TVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLR---PLSYRGADVFI   98 (159)
Q Consensus        27 vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~i   98 (159)
                      ++|++|||||||+++|.+... ...+..+........+..++ ...+.+||+||...    ...+.   ..++..+++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998864 23333332222222333441 34589999999632    22222   23467899999


Q ss_pred             EEEeCCCh------hhHHhhhhhhHHHHHhhhC--------CCCCEEEEeeCcccccCcccc
Q 044772           99 LAFSLISR------PSYENISKKKWVPELRHYA--------PSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        99 ~v~d~~~~------~s~~~~~~~~~~~~i~~~~--------~~~piilv~nK~Dl~~~r~v~  146 (159)
                      +|+|+.++      ..+....  .|...+....        .+.|+++|+||+|+...+.+.
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~  139 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYE--ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE  139 (176)
T ss_pred             EEEeccCCccccccCHHHHHH--HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHH
Confidence            99999987      4666665  5666665432        368999999999997655544

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.74  E-value=3.7e-17  Score=112.05  Aligned_cols=113  Identities=26%  Similarity=0.314  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL--------RPLSYR   92 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   92 (159)
                      ++|+++|++|+|||||++++.+....  ....++...........++  ..+.+||+||...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642  2222332222233334443  46899999997554322        224567


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      .++++++|+|+.++.+.....  .|..     ..+.|+++|+||+|+.....
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~--~~~~-----~~~~~vi~v~nK~D~~~~~~  124 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLE--ILEL-----PADKPIIVVLNKSDLLPDSE  124 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHH--HHHh-----hcCCCEEEEEEchhcCCccc
Confidence            899999999999877766554  2222     34789999999999975443

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=99.74  E-value=1.4e-17  Score=114.28  Aligned_cols=113  Identities=24%  Similarity=0.236  Sum_probs=76.5

Q ss_pred             EEEcCCCCCHHHHHHHHhcCC--CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCCc
Q 044772           26 VTVRDGAVGKTCLLISYTGNT--FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLSYRGAD   95 (159)
Q Consensus        26 ~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~   95 (159)
                      +++|.+|+|||||+++|.+..  +...+.++...........++  ..+.+||+||...+..        ....++..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999775  233333333333333444444  5689999999877543        2345678899


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      ++++|+|..+..+....   .+...+..  .+.|+++|+||+|+......
T Consensus        79 ~ii~v~d~~~~~~~~~~---~~~~~~~~--~~~piiiv~nK~D~~~~~~~  123 (157)
T cd01894          79 VILFVVDGREGLTPADE---EIAKYLRK--SKKPVILVVNKVDNIKEEDE  123 (157)
T ss_pred             EEEEEEeccccCCccHH---HHHHHHHh--cCCCEEEEEECcccCChHHH
Confidence            99999999875444332   22222322  25899999999999765443

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK15494 era GTPase Era; Provisional

Probab=99.74  E-value=6e-17  Score=125.02  Aligned_cols=116  Identities=19%  Similarity=0.304  Sum_probs=78.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccc-------
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP---TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLR-------   87 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------   87 (159)
                      ..+..+|+++|++|||||||+++|++.++.   +.+..| .......+..++  .++.+|||||... +..+.       
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tT-r~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~  125 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTT-RSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA  125 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCc-cCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence            456679999999999999999999988764   222222 222233444454  3589999999843 22211       


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ...+.++|++++|+|..+  +|..... .|+..+...  +.|.++|+||+|+.+.
T Consensus       126 ~~~l~~aDvil~VvD~~~--s~~~~~~-~il~~l~~~--~~p~IlViNKiDl~~~  175 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLK--SFDDITH-NILDKLRSL--NIVPIFLLNKIDIESK  175 (339)
T ss_pred             HHHhhhCCEEEEEEECCC--CCCHHHH-HHHHHHHhc--CCCEEEEEEhhcCccc
Confidence            124679999999999664  5655543 566665542  4677889999998653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.73  E-value=2.6e-17  Score=132.10  Aligned_cols=114  Identities=24%  Similarity=0.254  Sum_probs=82.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE----------DYNRLR-   87 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-   87 (159)
                      ..+||+++|.+|||||||+++|++...  ...+.++..+.....+..++..  +.+|||+|..          .+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998764  2333334333334455566654  5799999952          222221 


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..+++++|++|+|||+++..++..+   .++..+..  .+.|++||+||+|+.+
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~---~~~~~~~~--~~~piIiV~NK~Dl~~  336 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ---RVLSMVIE--AGRALVLAFNKWDLVD  336 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECcccCC
Confidence            2357899999999999988887766   34444433  4789999999999964

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.73  E-value=3.1e-17  Score=115.91  Aligned_cols=117  Identities=17%  Similarity=0.121  Sum_probs=77.1

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcc----------cccc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE----------DYNR   85 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~----------~~~~   85 (159)
                      .+..+..+|+++|++|+|||||++++.+..+...+.++.+.+... ....++   .+.+||+||..          .+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            345778899999999999999999999886544434444332221 122232   58999999952          2222


Q ss_pred             ccccccc---CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           86 LRPLSYR---GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        86 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +...+++   .++++++|+|.+++-+....   .++..+..  .+.|+++++||+|+..
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~---~~~~~~~~--~~~pviiv~nK~D~~~  143 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL---EMLEWLRE--RGIPVLIVLTKADKLK  143 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECcccCC
Confidence            3334444   36799999999875444433   22333322  3689999999999864

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.72  E-value=3.9e-17  Score=129.91  Aligned_cols=112  Identities=22%  Similarity=0.185  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED--------YNRLRPLSYR   92 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   92 (159)
                      .+|+++|.+|||||||+++|.+...  ...+.++..+.....+..++  ..+.+|||||.+.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998764  23333333333334445555  5699999999876        2222345678


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .+|++++|+|..+..+........|+..     .+.|+++|+||+|+.+
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~D~~~  123 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK-----SNKPVILVVNKVDGPD  123 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCcEEEEEECccCcc
Confidence            9999999999987544332211144443     2689999999999754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.72  E-value=1.6e-17  Score=131.89  Aligned_cols=124  Identities=26%  Similarity=0.353  Sum_probs=100.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|+.|+||||||-.+...++.+.-.+..+ ............+...+.|++..++-......-++.++++.+
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            5679999999999999999999999999866333332 222222333445568999998766666666778899999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v  145 (159)
                      +|+++++++.+.++. .|++.+++..   .++||||||||+|+.+...-
T Consensus        86 vyavd~~~T~D~ist-~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   86 VYAVDDESTVDRIST-KWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             EEecCChHHhhhhhh-hhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            999999999999998 9999999988   68999999999999765544

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.72  E-value=4.5e-17  Score=133.48  Aligned_cols=116  Identities=18%  Similarity=0.159  Sum_probs=85.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCcccce------eeee-EEE--EEE---CCeEEEEEEEeCCCcc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNT-------FPTDYVPTV------FDNF-SAN--VMV---DGRTVNLGLWDTAGQE   81 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~~-~~~--~~~---~~~~~~~~i~D~~g~~   81 (159)
                      ...+|+++|+.++|||||+++|+...       +...+..+.      +.+. ...  +.+   ++..+.+++|||||+.
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            35689999999999999999998642       112222211      2222 112  222   4566889999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .|...+..++..+|++|+|||+++..+++...  .|...+.   .++|+++|+||+|+..
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~--~~~~~~~---~~ipiIiViNKiDl~~  136 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLA--NVYLALE---NDLEIIPVINKIDLPS  136 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHH--HHHHHHH---cCCCEEEEEECcCCCc
Confidence            99988889999999999999999877776665  5544332   3689999999999964

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.71  E-value=5.8e-17  Score=114.50  Aligned_cols=113  Identities=18%  Similarity=0.063  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccee--------------eeeE-EEEEECCeEEEEEEEeCCCccccccccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF--------------DNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRP   88 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------------~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~   88 (159)
                      +|+++|.+|+|||||+++|++......+.....              .... ...........+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            489999999999999999998776543211110              0000 0111122245799999999988888888


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .++..+|++++|+|..++......   .++..+..  .+.|+++++||+|+..
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~~--~~~~i~iv~nK~D~~~  128 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR---EHLRIARE--GGLPIIVAINKIDRVG  128 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH---HHHHHHHH--CCCCeEEEEECCCCcc
Confidence            889999999999999876544332   34444433  4799999999999875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00436 era GTP-binding protein Era

Probab=99.71  E-value=7.2e-17  Score=121.07  Aligned_cols=111  Identities=19%  Similarity=0.225  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLSYRG   93 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   93 (159)
                      +|+++|.+|||||||+|+|++.++.  .....|+..... .+...+. .++.+|||||......        ....++.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999988753  222333333222 2222222 4589999999753211        12346789


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +|++++|+|+++..++.  .  .++..+..  .+.|+++|+||+|+...
T Consensus        80 aDvvl~VvD~~~~~~~~--~--~i~~~l~~--~~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--E--FVLTKLQN--LKRPVVLTRNKLDNKFK  122 (270)
T ss_pred             CCEEEEEEECCCCCchH--H--HHHHHHHh--cCCCEEEEEECeeCCCH
Confidence            99999999999876654  2  44544443  36899999999999643

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04163 Era Era subfamily

Probab=99.70  E-value=1.1e-16  Score=110.32  Aligned_cols=113  Identities=18%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--cccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTD--YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLSY   91 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~   91 (159)
                      ..+|+++|++|+|||||++++.+..+...  ...+...  ............+.+||+||......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN--RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec--eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            57899999999999999999998764321  1112111  11111223346789999999754332        223457


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..++++++|+|..++  +..... .+...+...  +.|+++|+||+|+..
T Consensus        81 ~~~d~i~~v~d~~~~--~~~~~~-~~~~~~~~~--~~~~iiv~nK~Dl~~  125 (168)
T cd04163          81 KDVDLVLFVVDASEP--IGEGDE-FILELLKKS--KTPVILVLNKIDLVK  125 (168)
T ss_pred             HhCCEEEEEEECCCc--cCchHH-HHHHHHHHh--CCCEEEEEEchhccc
Confidence            889999999999977  222221 333333332  589999999999974

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.70  E-value=1.1e-16  Score=122.88  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----cccccc---cccCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY----NRLRPL---SYRGA   94 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~   94 (159)
                      ..|++||.++||||||+++|...+.. ..|..|+-.-....+.+++ ...+.+||+||....    ..+...   .+.++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            36999999999999999999976532 2333232111122333333 246899999997421    122222   35579


Q ss_pred             cEEEEEEeCCCh---hhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCc
Q 044772           95 DVFILAFSLISR---PSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        95 ~~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r  143 (159)
                      +++++|+|+++.   +.+..+.  .|.+++..+.   .+.|++||+||+|+...+
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~--~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~  289 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYE--IIRNELKKYSPELAEKPRIVVLNKIDLLDEE  289 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHH--HHHHHHHHhhhhhccCCEEEEEeCccCCChH
Confidence            999999999976   5667766  7877777664   478999999999997543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01895 EngA2 EngA2 subfamily

Probab=99.70  E-value=1.7e-16  Score=110.28  Aligned_cols=115  Identities=22%  Similarity=0.267  Sum_probs=76.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL-----------RP   88 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~   88 (159)
                      .++|+++|.+|+|||||+++|++....  .....+........+..++.  .+.+||++|.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            578999999999999999999987632  22222222222233344443  4789999996543110           12


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ..+..+|++++|+|+.++.++...   .++..+..  .+.|+++++||+|+.+.+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~---~~~~~~~~--~~~~~iiv~nK~Dl~~~~  129 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL---RIAGLILE--EGKALVIVVNKWDLVEKD  129 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH---HHHHHHHh--cCCCEEEEEeccccCCcc
Confidence            245789999999999988765543   33333322  368999999999997653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.70  E-value=4.1e-16  Score=123.83  Aligned_cols=114  Identities=22%  Similarity=0.245  Sum_probs=81.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR----------   87 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------   87 (159)
                      ...++|+++|.+|+|||||+++|++...  .....++..+.....+..++.  .+.+|||+|........          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            4568999999999999999999998763  233444444444444445554  58899999975543321          


Q ss_pred             -cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           88 -PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        88 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                       ..+++.+|++|+|+|+.+..+....   .++..+..  .+.|+++|+||+|+.
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~---~~~~~~~~--~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDL---RIAGLILE--AGKALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHH---HHHHHHHH--cCCcEEEEEECcccC
Confidence             2357899999999999987666654   33343333  368999999999997

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.69  E-value=3.1e-16  Score=128.17  Aligned_cols=118  Identities=18%  Similarity=0.220  Sum_probs=84.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      ...+..+|+++|+.++|||||+++|.+..+...+.+...... ...+..++. ..+.+|||||++.|..++...+..+|+
T Consensus        83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi  161 (587)
T TIGR00487        83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI  161 (587)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence            345778999999999999999999998877655443332222 223334332 268999999999999998888999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +|+|||+++....+...  . +....  ..++|+++++||+|+.+
T Consensus       162 aILVVda~dgv~~qT~e--~-i~~~~--~~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       162 VVLVVAADDGVMPQTIE--A-ISHAK--AANVPIIVAINKIDKPE  201 (587)
T ss_pred             EEEEEECCCCCCHhHHH--H-HHHHH--HcCCCEEEEEECccccc
Confidence            99999988643222221  1 11111  13689999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04167 Snu114p Snu114p subfamily

Probab=99.69  E-value=7e-17  Score=117.15  Aligned_cols=112  Identities=19%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------ccce------eeee-E--EEEEE---CCeEEEEEEEeCCCc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDY-----------VPTV------FDNF-S--ANVMV---DGRTVNLGLWDTAGQ   80 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------~~t~------~~~~-~--~~~~~---~~~~~~~~i~D~~g~   80 (159)
                      +|+++|+.++|||||+.+|+........           ..+.      +... .  ..+..   ++..+.+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999975543210           0110      0111 0  11111   345688999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      ..|......++..+|++++|+|+.+..++...   .|+.....  .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~---~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE---RLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECcccC
Confidence            99888888889999999999999876655432   44444332  358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.69  E-value=2.2e-16  Score=125.39  Aligned_cols=113  Identities=25%  Similarity=0.272  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc--------cccccccccccC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE--------DYNRLRPLSYRG   93 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~   93 (159)
                      +|+++|.+|||||||+++|.+...  ...+.++..+.....+..++.  .+.+|||||..        .+......++..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998763  233333333333334445554  48999999963        233445567889


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +|++++|+|..+..+....   .+...+.+  .+.|+++|+||+|+...+
T Consensus        79 ad~vl~vvD~~~~~~~~d~---~i~~~l~~--~~~piilVvNK~D~~~~~  123 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE---EIAKWLRK--SGKPVILVANKIDGKKED  123 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH---HHHHHHHH--hCCCEEEEEECccCCccc
Confidence            9999999999875443332   22333332  368999999999987544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.69  E-value=2e-19  Score=124.62  Aligned_cols=121  Identities=30%  Similarity=0.497  Sum_probs=105.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEEC-CeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      ....+|++|+|.-|+|||+++.+.....|...|+.|++..+.. .+..+ ...+++++||+.||++|..+..-|++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            3567899999999999999999999999999999999988844 34444 456789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRK  141 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~  141 (159)
                      .++|||+++.-+|+...  .|.+.+....     .-+|+++++||||+..
T Consensus       102 ~~iVfdvt~s~tfe~~s--kwkqdldsk~qLpng~Pv~~vllankCd~e~  149 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVS--KWKQDLDSKLQLPNGTPVPCVLLANKCDQEK  149 (229)
T ss_pred             eEEEEEccccccccHHH--HHHHhccCcccCCCCCcchheeccchhccCh
Confidence            99999999999999998  9999887543     2467899999999864

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.68  E-value=1.9e-16  Score=112.92  Aligned_cols=118  Identities=18%  Similarity=0.106  Sum_probs=75.9

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE----------DYNRL   86 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~   86 (159)
                      ......++|+++|++|+|||||+++|++.++...+.++.+.+........  ...+.+||+||..          .+...
T Consensus        19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            34557789999999999999999999987765555555443222111111  2568999999942          23333


Q ss_pred             ccccccC---CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           87 RPLSYRG---ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        87 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ...++..   .+++++++|..++.+....   .+...+..  .+.|+++++||+|+..
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---~i~~~l~~--~~~~~iiv~nK~Dl~~  149 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL---QMIEWLKE--YGIPVLIVLTKADKLK  149 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH---HHHHHHHH--cCCcEEEEEECcccCC
Confidence            3444543   4678888998765443322   22222222  3689999999999864

>PRK11058 GTPase HflX; Provisional

Probab=99.68  E-value=2.1e-16  Score=124.98  Aligned_cols=116  Identities=22%  Similarity=0.139  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-C-cccceeeeeEEEEEECCeEEEEEEEeCCCcccc--cccc------ccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPT-D-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY--NRLR------PLSYR   92 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~   92 (159)
                      .+|+++|.+|+|||||+|+|.+.++.. + ...|... ....+...+. ..+.+|||+|....  ...+      ...+.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~-~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDP-TLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCC-ceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            589999999999999999999876432 2 2223222 2233444432 24789999997332  1122      22367


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccC
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~  142 (159)
                      .+|++++|+|++++.++..+.  .|...+.... .+.|+++|+||+|+...
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~--~v~~iL~el~~~~~pvIiV~NKiDL~~~  324 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIE--AVNTVLEEIDAHEIPTLLVMNKIDMLDD  324 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHH--HHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence            899999999999988877765  4444333332 47899999999998643

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.68  E-value=1.2e-16  Score=110.02  Aligned_cols=117  Identities=18%  Similarity=0.222  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR------LRPLSY--RG   93 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~   93 (159)
                      ++|+++|.||||||||+|+|.+.+.. .++..++-......+..++  ..+.++|+||...+..      ....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            58999999999999999999988854 3333333332334555566  4589999999543322      223343  57


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccccc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~  148 (159)
                      .|++|.|.|.++.+.-.     .+...+.+  -++|++++.||+|+.+.+.+..+
T Consensus        79 ~D~ii~VvDa~~l~r~l-----~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id  126 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL-----YLTLQLLE--LGIPVVVVLNKMDEAERKGIEID  126 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH-----HHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-
T ss_pred             CCEEEEECCCCCHHHHH-----HHHHHHHH--cCCCEEEEEeCHHHHHHcCCEEC
Confidence            99999999998654322     33333333  26999999999999877666543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.67  E-value=2.3e-16  Score=116.21  Aligned_cols=113  Identities=19%  Similarity=0.095  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-C-------Cc-----cc---ceeeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-T-------DY-----VP---TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL   86 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~-------~~-----~~---t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   86 (159)
                      +|+++|+.|+|||||+++|+...-. .       ..     .+   ..+... .....+.....++.+||+||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999854211 0       00     00   000011 112223334567999999999999888


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +..+++.+|++++|+|..+...... .  .++..+..  .++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~-~--~~~~~~~~--~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT-R--ILWRLLRK--LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH-H--HHHHHHHH--cCCCEEEEEECccccC
Confidence            8889999999999999987543322 2  45444443  3689999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.67  E-value=4.2e-17  Score=114.67  Aligned_cols=119  Identities=17%  Similarity=0.146  Sum_probs=71.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccc---cccCCcEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPL---SYRGADVFI   98 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~i   98 (159)
                      .-.|+++|++|+|||+|..+|..+...+..... +......+ -+.....+.+.|+||+.+.+.....   +..++.++|
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            456999999999999999999998765443333 33222111 1223345899999999988874444   478899999


Q ss_pred             EEEeCCC-hhhHHhhhhhhHHHHHh---hhCCCCCEEEEeeCcccccCc
Q 044772           99 LAFSLIS-RPSYENISKKKWVPELR---HYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        99 ~v~d~~~-~~s~~~~~~~~~~~~i~---~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ||+|.+. +..+.+..+ .++.-+.   .....+|++|++||+|+...+
T Consensus        81 fvvDSs~~~~~~~~~Ae-~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAE-YLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEETTTHHHHHHHHHH-HHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEeCccchhhHHHHHH-HHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            9999873 344444443 3333222   223589999999999987544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.66  E-value=1.3e-15  Score=127.65  Aligned_cols=117  Identities=18%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      ...+...|+++|+.++|||||+++|....+.....+...... ...+.+++  ..+.||||||++.|..++...+..+|+
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence            356788999999999999999999998777644333221111 22344444  568999999999999999888999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +|+|||+++...-....  .| ..+.  ..++|++|++||+|+..
T Consensus       364 aILVVdAddGv~~qT~e--~i-~~a~--~~~vPiIVviNKiDl~~  403 (787)
T PRK05306        364 VVLVVAADDGVMPQTIE--AI-NHAK--AAGVPIIVAINKIDKPG  403 (787)
T ss_pred             EEEEEECCCCCCHhHHH--HH-HHHH--hcCCcEEEEEECccccc
Confidence            99999998742222111  22 1111  13689999999999965

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.5e-16  Score=108.42  Aligned_cols=118  Identities=19%  Similarity=0.308  Sum_probs=91.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.-|++++|..|+|||||++.|..++. ..+.||.-++.. ++.+.+  +++..+|++|+......|+.|+..++++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE-~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSE-ELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChH-HheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            456899999999999999999987775 344666544322 345555  5699999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHh-hhCCCCCEEEEeeCcccccCc
Q 044772          101 FSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~-~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +|+.|.+.|.+... .+-..+. +....+|+++++||+|.+..-
T Consensus        95 vda~d~er~~es~~-eld~ll~~e~la~vp~lilgnKId~p~a~  137 (193)
T KOG0077|consen   95 VDAYDQERFAESKK-ELDALLSDESLATVPFLILGNKIDIPYAA  137 (193)
T ss_pred             eehhhHHHhHHHHH-HHHHHHhHHHHhcCcceeecccccCCCcc
Confidence            99999999998874 2211111 112479999999999987643

>cd01889 SelB_euk SelB subfamily

Probab=99.66  E-value=6e-16  Score=110.47  Aligned_cols=114  Identities=18%  Similarity=0.113  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC----CCCCCc-----ccceeeeeEE-EEE----------ECCeEEEEEEEeCCCccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN----TFPTDY-----VPTVFDNFSA-NVM----------VDGRTVNLGLWDTAGQED   82 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~----~~~~~~-----~~t~~~~~~~-~~~----------~~~~~~~~~i~D~~g~~~   82 (159)
                      ++|+++|++++|||||+++|+..    .+...+     ..|....+.. .+.          .++..+.+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862    121111     1222322221 211          123356799999999865


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +..........+|++++|+|+.+........  .+..  ... .+.|+++++||+|+..
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~--~~~~--~~~-~~~~~iiv~NK~Dl~~  134 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE--CLVI--GEI-LCKKLIVVLNKIDLIP  134 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHH--HHHH--HHH-cCCCEEEEEECcccCC
Confidence            5433334456789999999998754443332  2211  111 2579999999999863

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.66  E-value=6.1e-16  Score=128.62  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=84.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceee---eeEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD---NFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      ..+..+|+++|+.++|||||+++|....+.....+....   .+......++....+.+|||||++.|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            457789999999999999999999987765433322211   12222333345578999999999999999989999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ++|+|+|+++........  .| ..+.  ..++|++|++||+|+..
T Consensus       321 iaILVVDA~dGv~~QT~E--~I-~~~k--~~~iPiIVViNKiDl~~  361 (742)
T CHL00189        321 IAILIIAADDGVKPQTIE--AI-NYIQ--AANVPIIVAINKIDKAN  361 (742)
T ss_pred             EEEEEEECcCCCChhhHH--HH-HHHH--hcCceEEEEEECCCccc
Confidence            999999998743322221  11 1121  13689999999999975

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.66  E-value=3.1e-15  Score=118.02  Aligned_cols=114  Identities=23%  Similarity=0.246  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccc-eeeeeEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPT-VFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRPLS---YRGA   94 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~   94 (159)
                      .|.+||.|+||||||+++|.+.+.. .+|..| ...... .+.+++ ...+.+||+||.-.    ...+...+   +.++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            7999999999999999999976632 233332 222221 233331 24589999999632    11222233   5569


Q ss_pred             cEEEEEEeCCCh---hhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCccccc
Q 044772           95 DVFILAFSLISR---PSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRK  141 (159)
Q Consensus        95 ~~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  141 (159)
                      +++|+|+|+++.   +.+....  .|..++..+.+   +.|++||+||+|+.+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~--~i~~EL~~y~~~L~~kP~IVV~NK~DL~~  288 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYE--KINKELKLYNPRLLERPQIVVANKMDLPE  288 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHH--HHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence            999999999864   4566665  78777777653   789999999999854

>cd01850 CDC_Septin CDC/Septin

Probab=99.65  E-value=3.8e-15  Score=112.01  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=74.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------cccceeee-eEEEEEECCeEEEEEEEeCCCcccccc----
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTD----------YVPTVFDN-FSANVMVDGRTVNLGLWDTAGQEDYNR----   85 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~----   85 (159)
                      ..++|+++|.+|+|||||+++|++..+...          ..+|.... +...+..++..+.+.+|||||...+..    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            568999999999999999999998886543          23333222 233455577788999999999433211    


Q ss_pred             ----------------------cccccccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           86 ----------------------LRPLSYRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        86 ----------------------~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                                            .+...+.+  +|+++++++.+. ..+...+. ..+..+.   .++|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~-~~lk~l~---~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDI-EFMKRLS---KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHH-HHHHHHh---ccCCEEEEEECCCcCC
Confidence                                  11134444  555666666543 12222221 4444444   3689999999999844

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04169 RF3 RF3 subfamily

Probab=99.65  E-value=1.2e-15  Score=114.26  Aligned_cols=116  Identities=17%  Similarity=0.097  Sum_probs=77.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc---------ccce----------eee-eEEEEEECCeEEEEEEEeCCCc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTF-PTDY---------VPTV----------FDN-FSANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~---------~~t~----------~~~-~~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      ..+|+++|++|+|||||+++|+...- ....         ..+.          +.. ......+....+++++|||||+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            36899999999999999999984321 1110         0000          000 1122234445578999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ..|......+++.+|++|+|+|.++..... ..  .++.....  .++|+++++||+|+...
T Consensus        82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~--~i~~~~~~--~~~P~iivvNK~D~~~a  138 (267)
T cd04169          82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TR--KLFEVCRL--RGIPIITFINKLDREGR  138 (267)
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HH--HHHHHHHh--cCCCEEEEEECCccCCC
Confidence            988876777889999999999998653222 11  33333322  36899999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.65  E-value=5.1e-16  Score=113.48  Aligned_cols=116  Identities=22%  Similarity=0.330  Sum_probs=76.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEE-CCeEEEEEEEeCCCcccccc-----cccccccCCcE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMV-DGRTVNLGLWDTAGQEDYNR-----LRPLSYRGADV   96 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~   96 (159)
                      ||+++|++++||||+.+-+..+..+.. ....+.+.. ....+ ....+.+++||+||+..+..     .....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999888876543322 222222221 11122 23345799999999975543     34667899999


Q ss_pred             EEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           97 FILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      +|+|+|+.+.+-.+.+.. ..+++.+.++++++.+.|+.||+|+.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l  124 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL  124 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence            999999996554444432 37788888889999999999999984

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.65  E-value=2e-15  Score=104.73  Aligned_cols=123  Identities=20%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCC--------CCccc----ceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFP--------TDYVP----TVFDNFSANVMVDGRTVNLGLWDTAGQEDYN   84 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------~~~~~----t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   84 (159)
                      .......||+++|+-++||||++.++......        ..+..    |....|. .+..++ ...+.++++|||++|.
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g-~~~~~~-~~~v~LfgtPGq~RF~   82 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG-SIELDE-DTGVHLFGTPGQERFK   82 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc-ceEEcC-cceEEEecCCCcHHHH
Confidence            34567789999999999999999999866531        11111    1111111 222232 2458999999999999


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      -+|..+++.+.++|+++|.+.+..|. ..  ..+..+.... .+|++|++||.||...+..
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~~-a~--~ii~f~~~~~-~ip~vVa~NK~DL~~a~pp  139 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITFH-AE--EIIDFLTSRN-PIPVVVAINKQDLFDALPP  139 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcchH-HH--HHHHHHhhcc-CCCEEEEeeccccCCCCCH
Confidence            99999999999999999999999882 22  3343333322 2999999999999876544

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.65  E-value=9.6e-16  Score=111.75  Aligned_cols=120  Identities=15%  Similarity=0.096  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccc------e------eee---eEEEEEEC--------CeEEEEEEEeCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPT------V------FDN---FSANVMVD--------GRTVNLGLWDTA   78 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t------~------~~~---~~~~~~~~--------~~~~~~~i~D~~   78 (159)
                      +|+++|+.++|||||+.+|+...-.  .....+      .      +..   ....+...        +..+.+++||+|
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            7999999999999999999854311  100000      0      000   00011222        346889999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc-cCcccccc
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR-KDRQFHLD  148 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~-~~r~v~~~  148 (159)
                      |+..|......++..+|++++|||+.+....+..   ..+.....  .++|++|++||+|+. .+++++.+
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~---~~l~~~~~--~~~p~ilviNKiD~~~~e~~~~~~  147 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE---TVLRQALK--ERVKPVLVINKIDRLILELKLSPE  147 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECCCcchhhhcCCHH
Confidence            9999998888999999999999999976555433   22222222  368999999999976 34444433

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.65  E-value=1.1e-15  Score=127.92  Aligned_cols=114  Identities=25%  Similarity=0.267  Sum_probs=82.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----------YNRLR-   87 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~-   87 (159)
                      ..+||+++|.+|||||||+++|++.+.  ...+.+|..+.+...+.+++..  +.+|||+|...          +..+. 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999998874  3444555544444455566654  66999999532          11111 


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..+++.+|++++|+|+++..++....   ++..+..  .+.|++||+||+|+.+
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~---i~~~~~~--~~~piIiV~NK~DL~~  575 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK---VMSMAVD--AGRALVLVFNKWDLMD  575 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH---HHHHHHH--cCCCEEEEEEchhcCC
Confidence            23468899999999999887777653   3444433  3689999999999964

>PRK00089 era GTPase Era; Reviewed

Probab=99.64  E-value=5e-16  Score=117.67  Aligned_cols=115  Identities=23%  Similarity=0.223  Sum_probs=74.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------ccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPT--DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR--------LRPLS   90 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~   90 (159)
                      +.-.|+++|++|||||||+|+|++.++..  ....|...........+  ..++.+|||||......        .....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            45579999999999999999999887532  21222222222112222  26799999999643321        22335


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.++|++++|+|+++.  +..... .++..+..  .+.|+++|+||+|+...
T Consensus        82 ~~~~D~il~vvd~~~~--~~~~~~-~i~~~l~~--~~~pvilVlNKiDl~~~  128 (292)
T PRK00089         82 LKDVDLVLFVVDADEK--IGPGDE-FILEKLKK--VKTPVILVLNKIDLVKD  128 (292)
T ss_pred             HhcCCEEEEEEeCCCC--CChhHH-HHHHHHhh--cCCCEEEEEECCcCCCC
Confidence            6789999999999873  222221 33333332  36899999999999743

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.64  E-value=2.7e-15  Score=125.65  Aligned_cols=118  Identities=21%  Similarity=0.199  Sum_probs=78.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------ccccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED--------YNRLR   87 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~   87 (159)
                      .+....+|+++|.++||||||+++|++....  .....+..+........++  ..+.+|||+|.+.        +....
T Consensus       271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~  348 (712)
T PRK09518        271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA  348 (712)
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence            3445678999999999999999999987642  2222222221122233344  4588999999753        22233


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ..++..+|++|+|+|+.+.  +..... .|...+..  .+.|+++|+||+|+.+.
T Consensus       349 ~~~~~~aD~iL~VvDa~~~--~~~~d~-~i~~~Lr~--~~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        349 QIAVSLADAVVFVVDGQVG--LTSTDE-RIVRMLRR--AGKPVVLAVNKIDDQAS  398 (712)
T ss_pred             HHHHHhCCEEEEEEECCCC--CCHHHH-HHHHHHHh--cCCCEEEEEECcccccc
Confidence            4567899999999999853  333332 45555543  47899999999998653

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.63  E-value=1.6e-15  Score=121.30  Aligned_cols=118  Identities=18%  Similarity=0.143  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----ccc---cccccccCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNR---LRPLSYRGA   94 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~---~~~~~~~~~   94 (159)
                      .+|+|||.||||||||+++|.+.+.. .+|..|+-......+..++  ..+.+||+||.-.    ...   .....+.++
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            37999999999999999999976532 2333332221222334444  4689999999521    111   112346789


Q ss_pred             cEEEEEEeCCCh----hhHHhhhhhhHHHHHhhhC------------CCCCEEEEeeCcccccCcc
Q 044772           95 DVFILAFSLISR----PSYENISKKKWVPELRHYA------------PSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        95 ~~~i~v~d~~~~----~s~~~~~~~~~~~~i~~~~------------~~~piilv~nK~Dl~~~r~  144 (159)
                      +++|+|+|+++.    +.+..+.  .|..++..+.            .+.|++||+||+|+.+.+.
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~--~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e  301 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDID--ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE  301 (500)
T ss_pred             CEEEEEECCcccccccCchhhHH--HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH
Confidence            999999999853    2344443  4444554432            3689999999999976543

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.63  E-value=1.8e-15  Score=108.60  Aligned_cols=112  Identities=15%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceee-eeEE-EEEEC-CeEEEEEEEeCCCcccccccccc-----cccC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD-NFSA-NVMVD-GRTVNLGLWDTAGQEDYNRLRPL-----SYRG   93 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~-~~~~~-~~~~~~~i~D~~g~~~~~~~~~~-----~~~~   93 (159)
                      .+||+++|++|+|||||+|.|.+.........+.+. .... ...+. .....+.+||++|..........     .+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            378999999999999999999986543321111111 0110 00111 11235899999997543222222     3567


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      +|.++++.+    ..|...+. .|++.+...  +.|+++|+||+|+-
T Consensus        81 ~d~~l~v~~----~~~~~~d~-~~~~~l~~~--~~~~ilV~nK~D~~  120 (197)
T cd04104          81 YDFFIIISS----TRFSSNDV-KLAKAIQCM--GKKFYFVRTKVDRD  120 (197)
T ss_pred             cCEEEEEeC----CCCCHHHH-HHHHHHHHh--CCCEEEEEecccch
Confidence            888888733    34555554 677766664  57999999999983

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.63  E-value=8.3e-16  Score=106.69  Aligned_cols=99  Identities=20%  Similarity=0.127  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----cccccccCCcEEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR----LRPLSYRGADVFIL   99 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~~~~~~~~i~   99 (159)
                      +|+++|.+|+|||||+++|.+....  ...+..      +.++..    .+||+||......    .....+..+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--CccceE------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            7999999999999999998754311  112222      122222    2699999732221    11234689999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |+|+++.+++.  .  .|+..+   ..+.|+++++||+|+..
T Consensus        71 v~d~~~~~s~~--~--~~~~~~---~~~~~ii~v~nK~Dl~~  105 (158)
T PRK15467         71 VHGANDPESRL--P--AGLLDI---GVSKRQIAVISKTDMPD  105 (158)
T ss_pred             EEeCCCccccc--C--HHHHhc---cCCCCeEEEEEccccCc
Confidence            99999887662  2  454443   23679999999999965

>PRK10218 GTP-binding protein; Provisional

Probab=99.63  E-value=3.7e-15  Score=122.23  Aligned_cols=118  Identities=16%  Similarity=0.111  Sum_probs=83.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCCcc------------cceeeee-EEEEEECCeEEEEEEEeCCCcccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG--NTFPTDYV------------PTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR   85 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~   85 (159)
                      ...+|+++|+.++|||||+.+|+.  +.+...+.            .+.+... .....+....+++++||+||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            467999999999999999999996  33432211            1112222 23334455567899999999999999


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      .+..+++.+|++|+|+|+.+....+..   .++..+..  .++|++++.||+|+...+
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~---~~l~~a~~--~gip~IVviNKiD~~~a~  136 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR---FVTKKAFA--YGLKPIVVINKVDRPGAR  136 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH---HHHHHHHH--cCCCEEEEEECcCCCCCc
Confidence            999999999999999999865333222   22222222  368999999999987543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.63  E-value=2.8e-15  Score=122.85  Aligned_cols=112  Identities=21%  Similarity=0.224  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT---FPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      +.|+++|+.++|||||+++|.+..   +...+.++..... ...+..++  ..+.+||+||++.|......++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            368999999999999999998633   3222222222212 22334444  67999999999999888788889999999


Q ss_pred             EEEeCCCh---hhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccccCcc
Q 044772           99 LAFSLISR---PSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRKDRQ  144 (159)
Q Consensus        99 ~v~d~~~~---~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~r~  144 (159)
                      +|+|+++.   +++..+   .++..     .++| +++|+||+|+.+...
T Consensus        79 LVVDa~~G~~~qT~ehl---~il~~-----lgi~~iIVVlNK~Dlv~~~~  120 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL---AVLDL-----LGIPHTIVVITKADRVNEEE  120 (581)
T ss_pred             EEEECCCCCcHHHHHHH---HHHHH-----cCCCeEEEEEECCCCCCHHH
Confidence            99999973   343332   22221     2577 999999999976543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.62  E-value=2.4e-15  Score=122.91  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=78.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc----ceeeeeEEEEEEC-------------CeEEEEEEEeCCCcccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP----TVFDNFSANVMVD-------------GRTVNLGLWDTAGQEDY   83 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~   83 (159)
                      +..-|+++|++++|||||+++|.+..+.....+    +.+..+.......             .....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            345699999999999999999998877543222    2222221100000             00123889999999999


Q ss_pred             cccccccccCCcEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           84 NRLRPLSYRGADVFILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        84 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..++..++..+|++++|||+++   +.++..+   .++.   .  .++|+++++||+|+..
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i---~~l~---~--~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL---NILR---M--YKTPFVVAANKIDRIP  135 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH---HHHH---H--cCCCEEEEEECCCccc
Confidence            9988889999999999999987   4444433   2221   1  3689999999999964

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.62  E-value=3.3e-15  Score=122.75  Aligned_cols=118  Identities=18%  Similarity=0.148  Sum_probs=83.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----Ccccc------eeeee-EEE--EEE---CCeEEEEEEEeCCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT--FPT-----DYVPT------VFDNF-SAN--VMV---DGRTVNLGLWDTAGQ   80 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~-----~~~~t------~~~~~-~~~--~~~---~~~~~~~~i~D~~g~   80 (159)
                      ....+++++|+.++|||||+.+|+...  +..     .+..+      .+.+. ...  +.+   ++..+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            456799999999999999999998532  111     01000      11111 111  111   455788999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ..|...+..++..+|++|+|+|+++........  .|.....   .++|+++|+||+|+...
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~--~~~~~~~---~~lpiIvViNKiDl~~a  141 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLA--NVYLALE---NDLEIIPVLNKIDLPAA  141 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH--HHHHHHH---CCCCEEEEEECCCCCcc
Confidence            999988899999999999999999876655554  4443322   36899999999999653

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.3e-16  Score=109.40  Aligned_cols=119  Identities=21%  Similarity=0.264  Sum_probs=88.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCC---C----CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF---P----TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLS   90 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~---~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   90 (159)
                      .....+.++++|..++|||+|+.++.....   -    ....+|.+-+. .++..+  ...+.+||.+|++..+++|..|
T Consensus        13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~--~~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVC--NAPLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeec--cceeEEEEcCChHHHHHHHHHH
Confidence            345568899999999999999987753321   0    11223333222 122333  3458999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK  141 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~  141 (159)
                      |..+|++|+++|.++++.|....  .-++.+...  .+++|+++.+||.|+.+
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~--t~~~~v~~~E~leg~p~L~lankqd~q~  140 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESK--TAFEKVVENEKLEGAPVLVLANKQDLQN  140 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHH--HHHHHHHHHHHhcCCchhhhcchhhhhh
Confidence            99999999999999999999887  444444433  36999999999999875

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.61  E-value=1.4e-15  Score=118.62  Aligned_cols=130  Identities=23%  Similarity=0.261  Sum_probs=87.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN---------RLRPLSY   91 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   91 (159)
                      ..|+++|.||||||||.|||++.+..  .++..++.+.........+..  +.+.||+|-+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999988743  555555555444444555544  8999999965322         1223457


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccccc-----CCCccccccCC
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD-----YPGAYTISTEQ  159 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~-----~~~~~~~~~~~  159 (159)
                      ..+|+++||+|....-+-.+.   ...+.++  ..+.|++||.||+|-.+......|     .++-+++|++|
T Consensus        82 ~eADvilfvVD~~~Git~~D~---~ia~~Lr--~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~H  149 (444)
T COG1160          82 EEADVILFVVDGREGITPADE---EIAKILR--RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEH  149 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH---HHHHHHH--hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhh
Confidence            889999999998753332222   3333333  246899999999998755543333     45557777765

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.61  E-value=3.9e-15  Score=116.67  Aligned_cols=117  Identities=19%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN-------RLRPLSYRGAD   95 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~   95 (159)
                      .|.|||.||||||||+|+|.+.+.. ..|..|+-......+..++ ...+.++|+||.-.-.       ......+.+++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            6999999999999999999976643 2333333222222333332 2348999999963211       11123478899


Q ss_pred             EEEEEEeCC---ChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCc
Q 044772           96 VFILAFSLI---SRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        96 ~~i~v~d~~---~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r  143 (159)
                      ++++|+|++   +.+.+....  .|+..+..+.   .+.|++||+||+|+....
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~--~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~  291 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENAR--IIINELEKYSPKLAEKPRWLVFNKIDLLDEE  291 (390)
T ss_pred             EEEEEeccCcccccChHHHHH--HHHHHHHhhhhhhcCCCEEEEEeCCccCChH
Confidence            999999988   445566665  7888777664   368999999999996543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.61  E-value=1.2e-14  Score=115.63  Aligned_cols=115  Identities=23%  Similarity=0.249  Sum_probs=78.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL-----------   86 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   86 (159)
                      ...++|+++|.+|+|||||+++|++...  .....++........+..++  ..+.+|||+|.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3579999999999999999999997652  23333333333333334444  34789999996432211           


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ...++..+|++|+|+|+.++.+....   .++..+..  .+.|+++|+||+|+.+
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~---~i~~~~~~--~~~~~ivv~NK~Dl~~  298 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL---RIAGLALE--AGRALVIVVNKWDLVD  298 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCcEEEEEECccCCC
Confidence            12357889999999999987666554   33333332  3689999999999874

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.60  E-value=7.7e-15  Score=116.53  Aligned_cols=121  Identities=12%  Similarity=0.036  Sum_probs=75.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCc-------------cc---------------ceeeee-EEEEEECCe
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDY-------------VP---------------TVFDNF-SANVMVDGR   68 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~-------------~~---------------t~~~~~-~~~~~~~~~   68 (159)
                      ....++|+++|+.++|||||+++|+...-. ...             ..               ..+.+. .....+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            356789999999999999999999843211 000             00               001000 111123334


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .+.+.+||+||++.|.......+..+|++++|+|++++..+..... .++..+. .....|+++++||+|+.+
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~-~~~~~~~-~~~~~~iivviNK~Dl~~  153 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR-EHVFLAR-TLGINQLIVAINKMDAVN  153 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH-HHHHHHH-HcCCCeEEEEEEcccccc
Confidence            5679999999998876655556788999999999986322322221 2222222 222346999999999975

>cd00880 Era_like Era (E

Probab=99.59  E-value=1.1e-14  Score=99.22  Aligned_cols=112  Identities=21%  Similarity=0.207  Sum_probs=74.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-C-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc-------cccccCCcEE
Q 044772           27 TVRDGAVGKTCLLISYTGNTFP-T-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR-------PLSYRGADVF   97 (159)
Q Consensus        27 vvG~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~~~~~   97 (159)
                      ++|++|+|||||++++.+.... . ...++...........+. ...+.+||++|...+....       ..++..++++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999976544 2 222223332232322221 3569999999987654433       3467899999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      ++|+|..+........   |.....  ..+.|+++|+||+|+.....
T Consensus        80 l~v~~~~~~~~~~~~~---~~~~~~--~~~~~~ivv~nK~D~~~~~~  121 (163)
T cd00880          80 LFVVDADLRADEEEEK---LLELLR--ERGKPVLLVLNKIDLLPEEE  121 (163)
T ss_pred             EEEEeCCCCCCHHHHH---HHHHHH--hcCCeEEEEEEccccCChhh
Confidence            9999999876655442   222222  14789999999999875443

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.59  E-value=2.5e-14  Score=94.17  Aligned_cols=105  Identities=23%  Similarity=0.259  Sum_probs=67.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRPLSYR   92 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   92 (159)
                      +|+++|.+|+|||||+++|++.+..  ....++........+..++..  +.++|+||-..-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999975431  222222222223344556655  579999995321         111223347


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeC
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK  136 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK  136 (159)
                      .+|++++|+|..++.. ....  .++..+.   .+.|+++|.||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~--~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDK--NILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHH--HHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHH--HHHHHHh---cCCCEEEEEcC
Confidence            8999999999776322 1111  4444443   57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.59  E-value=9.2e-15  Score=116.12  Aligned_cols=122  Identities=11%  Similarity=0.009  Sum_probs=77.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc--CCCCCCc----------c-----------c------ceeeee-EEEEEECCe
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG--NTFPTDY----------V-----------P------TVFDNF-SANVMVDGR   68 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~~----------~-----------~------t~~~~~-~~~~~~~~~   68 (159)
                      ....++|+++|+.++|||||+.+|+.  +.+....          .           .      ..+.+. .....+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            35678999999999999999999985  2221100          0           0      000000 111123334


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .+.+.+||+||++.|.......+..+|++++|+|+++.+++..... .+...+.......|++|++||+|+.+
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t-~~~~~~~~~~~~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQT-REHAFLARTLGINQLIVAINKMDSVN  155 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCch-HHHHHHHHHcCCCeEEEEEEChhccC
Confidence            4679999999998887655666789999999999998754422221 11112222223457999999999964

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.59  E-value=1.2e-14  Score=119.12  Aligned_cols=113  Identities=22%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc----ceeeeeEEEEEE---CCeE-----E-----EEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP----TVFDNFSANVMV---DGRT-----V-----NLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~---~~~~-----~-----~~~i~D~~g~~~   82 (159)
                      .+...|+++|+.++|||||+++|.+..+.....+    +.+..+......   .+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            4566799999999999999999986654333221    222211110000   0111     1     168999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      |..++...+..+|++++|+|+++   +.++..+.   ++   ..  .++|+++++||+|+.
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~---~~---~~--~~vpiIvviNK~D~~  136 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN---IL---KR--RKTPFVVAANKIDRI  136 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH---HH---HH--cCCCEEEEEECcCCc
Confidence            99888888899999999999987   45554442   22   11  378999999999985

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.58  E-value=1.1e-14  Score=105.42  Aligned_cols=112  Identities=18%  Similarity=0.079  Sum_probs=69.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCC-c------------------------------ccceeeeeEEEEEECCeEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF-PTD-Y------------------------------VPTVFDNFSANVMVDGRTVN   71 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~-~~~-~------------------------------~~t~~~~~~~~~~~~~~~~~   71 (159)
                      ||+++|++++|||||+++|+...- ... .                              ....-......+  ......
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~--~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF--STPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE--ecCCce
Confidence            589999999999999999975331 110 0                              000000001111  222346


Q ss_pred             EEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           72 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        72 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +.+|||||++.|.......+..+|++|+|+|+++...-...   .....+ ......++++|.||+|+..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~---~~~~~~-~~~~~~~iIvviNK~D~~~  144 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR---RHSYIL-SLLGIRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH---HHHHHH-HHcCCCcEEEEEEchhccc
Confidence            88999999988766666678899999999999865322211   111111 1122345788999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.58  E-value=1.4e-14  Score=121.68  Aligned_cols=116  Identities=14%  Similarity=0.135  Sum_probs=78.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL----------RPLS   90 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~   90 (159)
                      .++|+++|++|||||||+|+|.+.+.. .++..+.-+  .++-.+.....++.+||+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve--~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVE--RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEe--eEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            478999999999999999999977643 222222221  222223444467999999998766432          1123


Q ss_pred             c--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           91 Y--RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        91 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      +  ..+|++++|+|.++.+.-.     .|...+.+  .++|++++.||+|+.+.+.+.
T Consensus        81 l~~~~aD~vI~VvDat~ler~l-----~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~  131 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL-----YLTLQLLE--LGIPCIVALNMLDIAEKQNIR  131 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH-----HHHHHHHH--cCCCEEEEEEchhhhhccCcH
Confidence            2  4799999999998755422     33333433  368999999999998666554

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.58  E-value=9.3e-15  Score=108.81  Aligned_cols=131  Identities=17%  Similarity=0.217  Sum_probs=87.7

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------
Q 044772           14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN---------   84 (159)
Q Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------   84 (159)
                      +......+...|++||.||+|||||.|.+++.+................-.+-....++.++|+||--.-.         
T Consensus        64 rde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~  143 (379)
T KOG1423|consen   64 RDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMM  143 (379)
T ss_pred             CCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHH
Confidence            33456789999999999999999999999999976443322222222111122233579999999942211         


Q ss_pred             ---ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccccc
Q 044772           85 ---RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus        85 ---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~  148 (159)
                         ..-...+.++|.+++++|+++...  .+.. ..+..+..+. ++|-++|.||.|+..++.+..+
T Consensus       144 s~lq~~~~a~q~AD~vvVv~Das~tr~--~l~p-~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~  206 (379)
T KOG1423|consen  144 SVLQNPRDAAQNADCVVVVVDASATRT--PLHP-RVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLN  206 (379)
T ss_pred             HhhhCHHHHHhhCCEEEEEEeccCCcC--ccCh-HHHHHHHHHh-cCCceeeccchhcchhhhHHhh
Confidence               112234567999999999997433  3332 4555555543 7999999999999887776543

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.57  E-value=3.4e-14  Score=104.49  Aligned_cols=82  Identities=21%  Similarity=0.214  Sum_probs=57.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN-------RLRPLSYRGAD   95 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~   95 (159)
                      +++++|++|+|||||+++|.+.... ..+..+........+.+++  ..+++||+||.....       .....++++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999977632 3333333222233444554  468999999974322       12235688999


Q ss_pred             EEEEEEeCCChh
Q 044772           96 VFILAFSLISRP  107 (159)
Q Consensus        96 ~~i~v~d~~~~~  107 (159)
                      ++++|+|++++.
T Consensus        80 ~il~V~D~t~~~   91 (233)
T cd01896          80 LILMVLDATKPE   91 (233)
T ss_pred             EEEEEecCCcch
Confidence            999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.57  E-value=1.4e-14  Score=118.78  Aligned_cols=116  Identities=16%  Similarity=0.116  Sum_probs=81.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCCccc------------ceeeee-EEEEEECCeEEEEEEEeCCCcccccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN--TFPTDYVP------------TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLR   87 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~------------t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~   87 (159)
                      .+|+++|+.++|||||+.+|+..  .+......            ..+.+. .....+....+++++|||||+..|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            47999999999999999999863  33221100            001111 2222334445779999999999999888


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ..++..+|++++|+|+.+.. +....  .|+..+..  .++|+++++||+|+...+
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~--~~l~~a~~--~~ip~IVviNKiD~~~a~  132 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTR--FVLKKALE--LGLKPIVVINKIDRPSAR  132 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHH--HHHHHHHH--CCCCEEEEEECCCCCCcC
Confidence            89999999999999998642 22222  55555444  368999999999997544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.57  E-value=1.2e-14  Score=108.89  Aligned_cols=114  Identities=19%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccce----------------eeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV----------------FDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL   86 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   86 (159)
                      +|+++|++|+|||||+++|+............                +... .....+....+.+++||+||+..|...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999998543211100000                0000 111112223357899999999888777


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ...++..+|++++|+|.++........  .| ..+..  .++|+++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~--~~-~~~~~--~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEK--LW-EFADE--AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH--HH-HHHHH--cCCCEEEEEECCccCCC
Confidence            788899999999999998765443332  22 22222  36899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.9e-15  Score=100.94  Aligned_cols=117  Identities=16%  Similarity=0.204  Sum_probs=92.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+..+++++|.-|+|||+++.++.-++.. ...|+++....   .+.....++++||++|+...+..|+.||.+.+++|+
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            37889999999999999999999876654 34667665443   223345679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK  141 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  141 (159)
                      |+|.+|+........ .+...+.+-. .+..++|++||.|...
T Consensus        92 VVDssd~dris~a~~-el~~mL~E~eLq~a~llv~anKqD~~~  133 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGV-ELYSMLQEEELQHAKLLVFANKQDYSG  133 (182)
T ss_pred             EEeccchhhhhhhHH-HHHHHhccHhhcCceEEEEeccccchh
Confidence            999999887766554 5555554332 3578999999999854

>PRK13351 elongation factor G; Reviewed

Probab=99.55  E-value=1.1e-14  Score=121.75  Aligned_cols=116  Identities=19%  Similarity=0.134  Sum_probs=82.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------CC-------cccceeeeeEEEEEECCeEEEEEEEeCC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP-------------TD-------YVPTVFDNFSANVMVDGRTVNLGLWDTA   78 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-------------~~-------~~~t~~~~~~~~~~~~~~~~~~~i~D~~   78 (159)
                      .....+|+|+|+.++|||||+++|+...-.             .+       +..|....   ..........+++||+|
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~---~~~~~~~~~~i~liDtP   81 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA---ATSCDWDNHRINLIDTP   81 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc---eEEEEECCEEEEEEECC
Confidence            346789999999999999999999853210             00       01111111   11222334679999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |+..|...+..+++.+|++++|+|.++...+....  .| ..+..  .++|+++++||+|+...
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~-~~~~~--~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTET--VW-RQADR--YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HH-HHHHh--cCCCEEEEEECCCCCCC
Confidence            99998888888999999999999999876665443  34 32322  36899999999998754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.55  E-value=2.7e-14  Score=117.28  Aligned_cols=109  Identities=14%  Similarity=0.183  Sum_probs=73.8

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCccc-ceeeeeEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCCcEEEE
Q 044772           29 RDGAVGKTCLLISYTGNTFPTDYVP-TVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFIL   99 (159)
Q Consensus        29 G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~i~   99 (159)
                      |++|||||||+|++.+..+...+.+ +..+.....+..++.  .+++||+||+..+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998876433333 322222334455553  4799999999876543      23333  37899999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      |+|.++.+...     .+...+.+  .+.|+++|+||+|+.+++.+.
T Consensus        79 VvDat~ler~l-----~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~  118 (591)
T TIGR00437        79 VVDASNLERNL-----YLTLQLLE--LGIPMILALNLVDEAEKKGIR  118 (591)
T ss_pred             EecCCcchhhH-----HHHHHHHh--cCCCEEEEEehhHHHHhCCCh
Confidence            99998743321     33333332  368999999999997766554

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1159 Era GTPase [General function prediction only]

Probab=99.55  E-value=4e-14  Score=105.27  Aligned_cols=118  Identities=18%  Similarity=0.187  Sum_probs=78.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL--------RPL   89 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   89 (159)
                      .+.--|+++|.|+||||||+|++++.+..  +....|+.......+..+  ..++.+.||||-..-...        ...
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            34567999999999999999999999864  222223232223333333  456899999995332222        233


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      .+.++|.++||.|+++...-  -+. ..++.++.  .+.|++++.||+|......
T Consensus        82 sl~dvDlilfvvd~~~~~~~--~d~-~il~~lk~--~~~pvil~iNKID~~~~~~  131 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGP--GDE-FILEQLKK--TKTPVILVVNKIDKVKPKT  131 (298)
T ss_pred             HhccCcEEEEEEeccccCCc--cHH-HHHHHHhh--cCCCeEEEEEccccCCcHH
Confidence            47889999999999975443  221 33444443  3579999999999876555

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.54  E-value=6.3e-14  Score=109.69  Aligned_cols=117  Identities=23%  Similarity=0.317  Sum_probs=85.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PL   89 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~   89 (159)
                      ...+|++++|.||||||||+|.|++..  +..+..+|+.+.....+.++|  +.+.+.||.|--......        ..
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            456899999999999999999999766  335556666666666777777  558999999965444332        23


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      .+..+|.+++|+|.+.+..-...   ..+.   ....+.|+++|.||.||.....
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~---~~~~---~~~~~~~~i~v~NK~DL~~~~~  341 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDL---ALIE---LLPKKKPIIVVLNKADLVSKIE  341 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhH---HHHH---hcccCCCEEEEEechhcccccc
Confidence            46789999999999986332222   2222   2335789999999999986544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.54  E-value=4.9e-14  Score=99.60  Aligned_cols=118  Identities=19%  Similarity=0.157  Sum_probs=78.1

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc----------ccccc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ----------EDYNR   85 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~----------~~~~~   85 (159)
                      .++.....|+++|.+|||||||+|.|++++-......|.|.+- ..-..+++.   +.+.|.||.          +.+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            4555677899999999999999999999773222222333322 223334443   789999983          23344


Q ss_pred             cccccccC---CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           86 LRPLSYRG---ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        86 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +..+|+..   ..++++++|+..+-.-.+...++|+..     .++|++||+||+|....
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~  150 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-----LGIPVIVVLTKADKLKK  150 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-----cCCCeEEEEEccccCCh
Confidence            55666643   567888889886655444433355544     36999999999997654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.54  E-value=5e-14  Score=101.52  Aligned_cols=115  Identities=19%  Similarity=0.125  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC---C--cccceeeeeEEEEEEC---------------------------C---
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPT---D--YVPTVFDNFSANVMVD---------------------------G---   67 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~---~--~~~t~~~~~~~~~~~~---------------------------~---   67 (159)
                      ++|.++|+.|+|||||+..+.+.....   .  ..-+....+.. +...                           +   
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYAN-AKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET   79 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccc-cccccccCcCCCCccccccccccccccccccCCcc
Confidence            478999999999999999996542111   0  00011111100 0000                           1   


Q ss_pred             -eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           68 -RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        68 -~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                       ....+.+||+||++.|.......+..+|++++|+|+.++.......  ..+..+.. ....|++||+||+|+..
T Consensus        80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~--~~l~~~~~-~~~~~iiivvNK~Dl~~  151 (203)
T cd01888          80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTS--EHLAALEI-MGLKHIIIVQNKIDLVK  151 (203)
T ss_pred             ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchH--HHHHHHHH-cCCCcEEEEEEchhccC
Confidence             1156899999999988777777788899999999998632111111  11111211 12357999999999975

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.54  E-value=3.8e-14  Score=97.80  Aligned_cols=109  Identities=19%  Similarity=0.192  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQED----------YNRLRPLSYR   92 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~   92 (159)
                      +|+++|.+|+|||||++.+.++.+.....++.+.+.. .....++   .+.+||++|...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            4899999999999999999976665554444433221 1222222   689999998432          2233333443


Q ss_pred             ---CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           93 ---GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        93 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                         +.+.+++++|..+..+........|+...     +.|+++++||+|+.
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~  123 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKL  123 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcC
Confidence               45788899998765322222111454432     48999999999984

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.53  E-value=7.6e-14  Score=99.34  Aligned_cols=115  Identities=23%  Similarity=0.210  Sum_probs=77.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------------------ccceeeeeEEEEEECCeEEEEEEEeCCCc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDY--------------------VPTVFDNFSANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      +.++|+++|+.++|||||+.+|+........                    .-|... .......+.....+.++|+||+
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~-~~~~~~~~~~~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDL-SFISFEKNENNRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSS-EEEEEEBTESSEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccc-ccccccccccccceeecccccc
Confidence            4579999999999999999999854422110                    000111 1112221234456999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..|.......+..+|++|+|+|+.+.-.....   ..+..+..  .++|++++.||+|+.+
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~---~~l~~~~~--~~~p~ivvlNK~D~~~  136 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTE---EHLKILRE--LGIPIIVVLNKMDLIE  136 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH---HHHHHHHH--TT-SEEEEEETCTSSH
T ss_pred             cceeecccceecccccceeeeecccccccccc---cccccccc--cccceEEeeeeccchh
Confidence            98888777788999999999999865333322   23333332  3688999999999973

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.53  E-value=4.1e-14  Score=114.65  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=79.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc--CCCC--C-------------Ccccc---eeeee-EEEEEECCeEEEEEEEeCC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG--NTFP--T-------------DYVPT---VFDNF-SANVMVDGRTVNLGLWDTA   78 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~--~~~~--~-------------~~~~t---~~~~~-~~~~~~~~~~~~~~i~D~~   78 (159)
                      .+..+|+++|+.++|||||.++|+.  +...  .             ++.+.   .+... .....+....+.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4677999999999999999999973  2111  0             00000   01111 1122334445779999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      |+..|......++..+|++|+|+|+.+..... ..  .++.....  .++|+++++||+|+....
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~--~l~~~~~~--~~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TR--KLMEVCRL--RDTPIFTFINKLDRDGRE  147 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HH--HHHHHHHh--cCCCEEEEEECCcccccC
Confidence            99998887777889999999999998643221 11  33333322  479999999999987533

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.52  E-value=4.9e-14  Score=105.65  Aligned_cols=113  Identities=16%  Similarity=0.049  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CC------------ccc---ceeeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-TD------------YVP---TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL   86 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~~------------~~~---t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   86 (159)
                      +|+++|++++|||||+++|+...-. ..            +.+   ..+... .....+.....++.+|||||+..|...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            5899999999999999999742210 00            000   000000 011112223467899999999888888


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +..+++.+|++|+|+|..+...-...   .++..+..  .++|++++.||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t~---~~~~~~~~--~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQTE---TVWRQADR--YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECCCCCC
Confidence            88899999999999998864322211   33333332  3589999999999874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR00503 prfC peptide chain release factor 3

Probab=99.52  E-value=8.6e-14  Score=112.83  Aligned_cols=117  Identities=17%  Similarity=0.106  Sum_probs=78.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc-CCCCCCc-----cc----c----------eeeee-EEEEEECCeEEEEEEEeCC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG-NTFPTDY-----VP----T----------VFDNF-SANVMVDGRTVNLGLWDTA   78 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~-~~~~~~~-----~~----t----------~~~~~-~~~~~~~~~~~~~~i~D~~   78 (159)
                      .+..+|+++|++++|||||+++|+. .......     ..    +          .+... .....++...+.+++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4678999999999999999999863 2211110     00    0          01111 1223345556789999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |+..|......++..+|++|+|+|..+.  +..... .+++....  .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~-~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTR-KLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHH-HHHHHHHh--cCCCEEEEEECccccC
Confidence            9988887667788999999999998863  222221 44443332  4689999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.50  E-value=4.8e-14  Score=93.16  Aligned_cols=102  Identities=25%  Similarity=0.282  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-cceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYV-PTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +|++++|..|+|||+|+.++....+...+. ++.+                          +......+.+.++.+++||
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998777754433 3322                          2223345667889999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +..+++++..+    |...+.... .++|+++++||.|+.+.+++..+++..|+
T Consensus        55 ~~~~~~s~~~~----~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~  104 (124)
T smart00010       55 RVDDRDSADNK----NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLEFA  104 (124)
T ss_pred             EccCHHHHHHH----hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHHHH
Confidence            99999988633    666665544 47889999999999665566555444443

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.48  E-value=3.9e-13  Score=105.01  Aligned_cols=123  Identities=25%  Similarity=0.287  Sum_probs=86.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccc-
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE----------DYNRL-   86 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~-   86 (159)
                      ...+||+++|.|++|||||+|+|+++.-  .+....|..+.....+..++..  +.+.||.|--          .|... 
T Consensus       176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~r  253 (444)
T COG1160         176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVAR  253 (444)
T ss_pred             CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehh
Confidence            4679999999999999999999998763  3444445555445555666654  8899999832          22221 


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccC
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      ....+..++.+++|.|...+-+-++.   .....+.+  .+.++++|.||.|+.+.+..+.++
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD~---~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~  311 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQDL---RIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEE  311 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHHH---HHHHHHHH--cCCCeEEEEEccccCCchhhHHHH
Confidence            12346789999999999977665544   33333333  468999999999987765555443

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.47  E-value=3.1e-13  Score=113.03  Aligned_cols=116  Identities=15%  Similarity=0.054  Sum_probs=78.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-C---cc---------------cceeeeeEEEEEECCeEEEEEEEeCCC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPT-D---YV---------------PTVFDNFSANVMVDGRTVNLGLWDTAG   79 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~---~~---------------~t~~~~~~~~~~~~~~~~~~~i~D~~g   79 (159)
                      ..+..+|+++|+.++|||||+++|+...-.. .   ..               .+.-......+..  ...++.+|||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCC
Confidence            3457799999999999999999997422110 0   00               0000001112222  346799999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +..|......++..+|++++|+|+.+.......   .++..+..  .++|+++++||+|+..
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~---~~~~~~~~--~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE---TVWRQANR--YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH---HHHHHHHH--cCCCEEEEEECCCCCC
Confidence            988877778889999999999999875444433   33333332  3689999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd00066 G-alpha G protein alpha subunit

Probab=99.46  E-value=3.6e-13  Score=103.17  Aligned_cols=75  Identities=13%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHhhhhhhHHHHHhhhC--CCCCEEEEee
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR----------PSYENISKKKWVPELRHYA--PSVPIVLVGT  135 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~i~~~~--~~~piilv~n  135 (159)
                      ..+.+.+||++|+...+..|.+++.++++++||+|+++-          ..+.+..  ..+..+....  .+.|++|++|
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl--~~f~~i~~~~~~~~~pill~~N  236 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESL--NLFDSICNSRWFANTSIILFLN  236 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHH--HHHHHHHhCccccCCCEEEEcc
Confidence            346788999999999999999999999999999999874          3344444  4444444432  5899999999


Q ss_pred             CcccccCcc
Q 044772          136 KLDLRKDRQ  144 (159)
Q Consensus       136 K~Dl~~~r~  144 (159)
                      |.|+.+++.
T Consensus       237 K~D~f~~ki  245 (317)
T cd00066         237 KKDLFEEKI  245 (317)
T ss_pred             ChHHHHHhh
Confidence            999865443

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.46  E-value=2.4e-13  Score=99.07  Aligned_cols=114  Identities=12%  Similarity=0.038  Sum_probs=70.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-C---------------C-------cccce----eeee---EEEEEECCeEEEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-T---------------D-------YVPTV----FDNF---SANVMVDGRTVNLG   73 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~---------------~-------~~~t~----~~~~---~~~~~~~~~~~~~~   73 (159)
                      +|+++|+.++|||||+.+|+...-. .               .       .....    +...   .....+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999999732110 0               0       00000    0000   11112222346799


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEeCCChhh---HH---hhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS---YE---NISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      +||+||+..|...+...+..+|++|+|+|+.+...   |.   ...  ..+... ......|+++++||+|+.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~iiivvNK~Dl~  150 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR--EHALLA-RTLGVKQLIVAVNKMDDV  150 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH--HHHHHH-HHcCCCeEEEEEEccccc
Confidence            99999998777666667788999999999987521   11   111  112222 222246899999999997

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.45  E-value=5.3e-13  Score=100.39  Aligned_cols=118  Identities=20%  Similarity=0.196  Sum_probs=79.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-c-ccccc------cccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-D-YNRLR------PLSY   91 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~-~~~~~------~~~~   91 (159)
                      ....|+|.|.||||||||++++.+.+-. ..|..|+...+..++..++  ..+|+.||||-- + +..+.      ...+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            4567999999999999999999977643 4566665544444444444  469999999941 1 11110      1112


Q ss_pred             c-CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           92 R-GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        92 ~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      + -.++++|+||.+..-.+.--.-+.++++++.... .|+++|.||.|+.+
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~  294 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIAD  294 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccc
Confidence            2 2668899999886544322211377888887775 89999999999874

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.44  E-value=8.5e-13  Score=94.58  Aligned_cols=115  Identities=23%  Similarity=0.191  Sum_probs=73.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC------CCc-----cc---ceeeee-EEEEEECCeEEEEEEEeCCCccccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP------TDY-----VP---TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL   86 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~-----~~---t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   86 (159)
                      .++|+++|..++|||||+++|+.....      ..+     .+   ..+... .....+.....++.+.|+||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            478999999999999999999854100      000     00   001111 111223333456899999999888776


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      ....+..+|++++|+|+...-.-...   ..+..+..  .++| ++++.||+|+..
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~~---~~~~~~~~--~~~~~iIvviNK~D~~~  132 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQTR---EHLLLARQ--VGVPYIVVFLNKADMVD  132 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCcEEEEEeCCCCCC
Confidence            67778899999999998754221111   33333332  2456 789999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.43  E-value=4.3e-13  Score=112.61  Aligned_cols=117  Identities=19%  Similarity=0.078  Sum_probs=78.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC---------------CCCC---cccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT---------------FPTD---YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~---------------~~~~---~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      ....+|+++|+.++|||||+++|+...               +...   +..|..... ......++..+.+++|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            456899999999999999999997431               1110   111222111 112234566788999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..|.......+..+|++|+|+|+.+........  .| ..+..  .+.|+++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~--~~-~~~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET--VL-RQALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHH--HH-HHHHH--cCCCEEEEEEChhccc
Confidence            988877788899999999999987643222221  22 22211  3678899999999863

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.42  E-value=5e-13  Score=105.63  Aligned_cols=119  Identities=16%  Similarity=0.058  Sum_probs=74.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc------ceeeeeEE-------------EEEE----CC------eEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP------TVFDNFSA-------------NVMV----DG------RTV   70 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~------t~~~~~~~-------------~~~~----~~------~~~   70 (159)
                      ...++|+++|..++|||||+++|.+... ..+..      |....+..             .+..    +.      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            3578999999999999999999964321 11111      11111100             0000    11      135


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        71 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      .+.+||+||++.|...+......+|++++|+|+++........  ..+..+. .....|+++++||+|+...
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~--e~l~~l~-~~gi~~iIVvvNK~Dl~~~  149 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK--EHLMALE-IIGIKNIVIVQNKIDLVSK  149 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH--HHHHHHH-HcCCCeEEEEEEccccCCH
Confidence            6899999999999877777778899999999998643111111  2222221 1223469999999999753

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.41  E-value=3e-12  Score=91.74  Aligned_cols=113  Identities=20%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcc--cceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYV--PTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR-----------LRP   88 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   88 (159)
                      ++|+++|.+|+|||||+|.+++.+.. ....  +............++.  .+.++||||-.....           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987643 2211  1111111222234443  589999999644321           112


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCccccc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRK  141 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  141 (159)
                      ...++.+++++|.++.+ .+-...   ..++.+.+...   -.++++|.|+.|...
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d~---~~l~~l~~~fg~~~~~~~ivv~T~~d~l~  130 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEEE---QAVETLQELFGEKVLDHTIVLFTRGDDLE  130 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHHH---HHHHHHHHHhChHhHhcEEEEEECccccC
Confidence            23467899999999876 222222   33444444321   257888888888543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=6.7e-13  Score=94.28  Aligned_cols=113  Identities=16%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc---CCcEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR---GADVFIL   99 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~i~   99 (159)
                      -.|+++|+++||||+|..+|..+.+... .++++++.. ...++..  ...+.|.||+.+.+.....+++   .+.++||
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn~a-~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPNEA-TYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCe-eeeecccee-eEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            4699999999999999999998865443 222333221 1112222  2789999999999988878877   7899999


Q ss_pred             EEeCCC-hhhHHhhhhhhHHHHHhhh---CCCCCEEEEeeCcccc
Q 044772          100 AFSLIS-RPSYENISKKKWVPELRHY---APSVPIVLVGTKLDLR  140 (159)
Q Consensus       100 v~d~~~-~~s~~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~  140 (159)
                      |+|... +....+..+ .++.-+...   ...+|+++++||.|+.
T Consensus       115 VVDSa~f~k~vrdvae-fLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAE-FLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEeccccchhhHHHHH-HHHHHHHhhccccCCCCEEEEecchhhh
Confidence            999752 222333332 333333333   2578999999999985

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.40  E-value=2.2e-12  Score=106.45  Aligned_cols=112  Identities=22%  Similarity=0.194  Sum_probs=71.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC---CCCCc--ccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT---FPTDY--VPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      -|.++|+.++|||||+++|.+..   +....  ..|+...+......++  ..+.+||+||++.|.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            47889999999999999998632   22221  2233333322111123  34899999999998776667788999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRKD  142 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~  142 (159)
                      +|+|+++...-+..   ..+..+.. . ++| ++||+||+|+.+.
T Consensus        80 LVVda~eg~~~qT~---ehl~il~~-l-gi~~iIVVlNKiDlv~~  119 (614)
T PRK10512         80 LVVACDDGVMAQTR---EHLAILQL-T-GNPMLTVALTKADRVDE  119 (614)
T ss_pred             EEEECCCCCcHHHH---HHHHHHHH-c-CCCeEEEEEECCccCCH
Confidence            99999863222211   12222211 1 345 6899999999753

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.38  E-value=3.3e-12  Score=96.63  Aligned_cols=123  Identities=13%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------ccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR-------LRPLS   90 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~   90 (159)
                      ...++|+++|.+|+||||++|+|++....  +...+............++  ..+.++||||......       ....+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            46789999999999999999999987642  2222111111111122333  5699999999653321       11222


Q ss_pred             c--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCcccccCcccc
Q 044772           91 Y--RGADVFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        91 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~r~v~  146 (159)
                      +  ...|++++|..++.. .+...+. ..++.+.....   -.+.+|+.|+.|.......+
T Consensus       114 l~~~g~DvVLyV~rLD~~-R~~~~Dk-qlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAY-RVDTLDG-QVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             hhcCCCCEEEEEeccCcc-cCCHHHH-HHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence            2  258899999766532 2333322 44444444431   35689999999965433333

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.38  E-value=2.8e-12  Score=101.05  Aligned_cols=117  Identities=21%  Similarity=0.163  Sum_probs=73.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC------------CCC-----cccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF------------PTD-----YVPTVFDNFSANVMVDGRTVNLGLWDTAGQE   81 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~------------~~~-----~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~   81 (159)
                      ....++|+++|+.++|||||+.+|++...            ...     .+...-+  .....+......+.+||+||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence            35678999999999999999999974310            000     0111111  1122333344568999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCE-EEEeeCcccccC
Q 044772           82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKLDLRKD  142 (159)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~~  142 (159)
                      .|..........+|++++|+|+.+.......   ..+..+..  .++|. +++.||+|+.+.
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~---e~l~~~~~--~gi~~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDMVDD  143 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCEEEEEEEecccCCH
Confidence            8876555556788999999999863222221   22222222  25675 468999998653

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.38  E-value=3e-12  Score=100.85  Aligned_cols=118  Identities=20%  Similarity=0.167  Sum_probs=74.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---C---cc---c-----ceeeee-EEEEEECCeEEEEEEEeCCCcccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPT---D---YV---P-----TVFDNF-SANVMVDGRTVNLGLWDTAGQEDY   83 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~---~~---~-----t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   83 (159)
                      ....++|+++|+.++|||||+.+|++.....   .   +.   .     ..+.+. .....+......+.++|+||++.|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            3457899999999999999999998531100   0   00   0     001100 111223333456889999999888


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      .......+..+|++++|+|+.+...-...   .++..+..  .++| ++++.||+|+.+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~---~~~~~~~~--~g~~~~IvviNK~D~~~  142 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQTR---EHILLARQ--VGVPYLVVFLNKVDLVD  142 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCEEEEEEEecCCcc
Confidence            76555666789999999998863222221   22232322  2577 688999999874

>smart00275 G_alpha G protein alpha subunit

Probab=99.37  E-value=1.6e-12  Score=100.45  Aligned_cols=72  Identities=14%  Similarity=0.242  Sum_probs=57.3

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR----------PSYENISKKKWVPELRHYA--PSVPIVLVGTKL  137 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~  137 (159)
                      +.+.+||.+|+...+..|.+++.+++++|||+|+++-          ..+.+..  ..++.+....  .+.|++|++||.
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl--~~f~~l~~~~~~~~~piil~~NK~  261 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESL--NLFESICNSRWFANTSIILFLNKI  261 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHH--HHHHHHHcCccccCCcEEEEEecH
Confidence            5688999999999999999999999999999999963          3455444  4555555432  589999999999


Q ss_pred             ccccCc
Q 044772          138 DLRKDR  143 (159)
Q Consensus       138 Dl~~~r  143 (159)
                      |+..++
T Consensus       262 D~~~~K  267 (342)
T smart00275      262 DLFEEK  267 (342)
T ss_pred             HhHHHH
Confidence            987544

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.37  E-value=2.9e-12  Score=102.99  Aligned_cols=120  Identities=17%  Similarity=0.062  Sum_probs=73.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc-----------ccce-------------------eeee-EEEEEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDY-----------VPTV-------------------FDNF-SANVMV   65 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~-----------~~t~-------------------~~~~-~~~~~~   65 (159)
                      .....++|+++|+.++|||||+.+|+...- ....           ..+.                   +.+. ......
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            345679999999999999999999984431 1100           0000                   0000 011112


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           66 DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        66 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .....++.++|+||++.|.......+..+|++++|+|+.....-....  .+. .+.. ....|++|+.||+|+.+
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~--~~~-l~~~-lg~~~iIvvvNKiD~~~  174 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR--HSF-IATL-LGIKHLVVAVNKMDLVD  174 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH--HHH-HHHH-hCCCceEEEEEeecccc
Confidence            233456899999999888655455578999999999987542211111  111 1111 11247899999999874

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.37  E-value=6.4e-12  Score=91.88  Aligned_cols=112  Identities=17%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccc-----------------------eeeeeE----------------EEEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPT-----------------------VFDNFS----------------ANVM   64 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-----------------------~~~~~~----------------~~~~   64 (159)
                      ||+++|+.++|||||+.+|..+.+.......                       .+....                ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999977664321100                       000000                0001


Q ss_pred             ECCeEEEEEEEeCCCccccccccccccc--CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           65 VDGRTVNLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        65 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      .  ....+.+.|+||++.|.......+.  .+|++++|+|+.....-...   .++..+..  .++|+++|.||+|+...
T Consensus        81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~---~~l~~l~~--~~ip~ivvvNK~D~~~~  153 (224)
T cd04165          81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK---EHLGLALA--LNIPVFVVVTKIDLAPA  153 (224)
T ss_pred             e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCEEEEEECccccCH
Confidence            1  1245889999999888654444443  68999999998764332222   33443333  35899999999998543

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.37  E-value=2.3e-12  Score=102.00  Aligned_cols=119  Identities=18%  Similarity=0.082  Sum_probs=71.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc------cceeeeeEE-E------------EE----EC--C----eE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV------PTVFDNFSA-N------------VM----VD--G----RT   69 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~------~t~~~~~~~-~------------~~----~~--~----~~   69 (159)
                      ....++|+++|+.++|||||+.+|.+.. ...+.      -|....+.. .            ..    .+  +    ..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            4566999999999999999999986431 11111      111111100 0            00    00  0    12


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ..+.+||+||++.|..........+|++++|+|+.++. ......  .+ ..+.. ....|+++|+||+|+.+.
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l-~~l~~-~~i~~iiVVlNK~Dl~~~  154 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HL-MALDI-IGIKNIVIVQNKIDLVSK  154 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HH-HHHHH-cCCCcEEEEEEeeccccc
Confidence            57899999999887665555556789999999998643 111111  11 11111 122469999999999653

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.36  E-value=6.6e-12  Score=93.11  Aligned_cols=119  Identities=14%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCccccc--c--------
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPT--DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN--R--------   85 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~--------   85 (159)
                      .....++|+|+|.+|||||||+|.|++.....  ...++...........++  ..+.+|||||-....  .        
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            44567899999999999999999999876432  222222111112222334  468999999965431  1        


Q ss_pred             ccccccc--CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCcccc
Q 044772           86 LRPLSYR--GADVFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLR  140 (159)
Q Consensus        86 ~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  140 (159)
                      ....++.  ..+++++|..++.. .+...+. ..++.+.....   -.++++|.||+|..
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~-r~~~~d~-~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMY-RRDYLDL-PLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCC-CCCHHHH-HHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence            0122333  46777787666543 2333322 44444444332   25799999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>CHL00071 tufA elongation factor Tu

Probab=99.36  E-value=5.9e-12  Score=99.64  Aligned_cols=118  Identities=20%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC------Ccccc--------eeeee-EEEEEECCeEEEEEEEeCCCcccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPT------DYVPT--------VFDNF-SANVMVDGRTVNLGLWDTAGQEDY   83 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~t--------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   83 (159)
                      ....++|+++|++++|||||+++|++..-..      .+...        .+.+. .....+.....++.+.|+||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            4566899999999999999999999642110      00000        00000 011122233346789999999877


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      .......+..+|++++|+|+.....-+..   ..+..+..  .++| ++++.||+|+.+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~---~~~~~~~~--~g~~~iIvvvNK~D~~~  142 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQTK---EHILLAKQ--VGVPNIVVFLNKEDQVD  142 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCEEEEEEEccCCCC
Confidence            66656667889999999998854322211   23333322  2578 778999999975

>PRK12735 elongation factor Tu; Reviewed

Probab=99.36  E-value=6.3e-12  Score=99.10  Aligned_cols=117  Identities=19%  Similarity=0.144  Sum_probs=73.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-Cccc-c-----eeeee-EEEEEECCeEEEEEEEeCCCccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT-------FPT-DYVP-T-----VFDNF-SANVMVDGRTVNLGLWDTAGQEDYN   84 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~-~~~~-t-----~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   84 (159)
                      ...++|+++|+.++|||||+++|++..       +.. .... +     .+.+. .....+.....++.++|+||+..|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            456899999999999999999998621       100 0000 0     01100 1112233334568999999998876


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEE-EEeeCccccc
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIV-LVGTKLDLRK  141 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~  141 (159)
                      ......+..+|++++|+|+.+...-...   .++..+..  .++|.+ ++.||+|+.+
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~qt~---e~l~~~~~--~gi~~iivvvNK~Dl~~  142 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCeEEEEEEecCCcc
Confidence            6556667889999999999864322211   23333322  257755 6799999964

>PRK12739 elongation factor G; Reviewed

Probab=99.35  E-value=8.9e-12  Score=104.39  Aligned_cols=115  Identities=16%  Similarity=0.048  Sum_probs=77.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CC------------------cccceeeeeEEEEEECCeEEEEEEEeCCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TD------------------YVPTVFDNFSANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~------------------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      .+..+|+++|+.++|||||+++|+...-. ..                  .+...-......+..  ...++.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCCH
Confidence            46789999999999999999999742110 00                  000000101112222  3356899999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..|...+...+..+|++|+|+|+.+...-...   ..+..+..  .++|++++.||+|+..
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~---~i~~~~~~--~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE---TVWRQADK--YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECCCCCC
Confidence            88877788889999999999998865332222   33333332  3589999999999875

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.34  E-value=1.3e-12  Score=94.04  Aligned_cols=119  Identities=24%  Similarity=0.329  Sum_probs=84.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---cccceeeeeEEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTD---YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY-----NRLRPLSYR   92 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~   92 (159)
                      ...||+++|.+|+|||||-.-++.+....+   ..+|+..+.+ ++.+-|. +.+++||++|++.+     ....+..+.
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs-h~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~   80 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS-HVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFR   80 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh-hhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhe
Confidence            457999999999999999766664443211   2233333222 2222332 45999999999843     234567789


Q ss_pred             CCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           93 GADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +.++++++||+...+-..++.. +..++.+.++.+...+.+..+|.|+..
T Consensus        81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence            9999999999998876666553 356778888888999999999999853

>PLN03126 Elongation factor Tu; Provisional

Probab=99.34  E-value=8.3e-12  Score=100.26  Aligned_cols=118  Identities=20%  Similarity=0.150  Sum_probs=75.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC------CCCCcc---cce-----eeee-EEEEEECCeEEEEEEEeCCCcccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNT------FPTDYV---PTV-----FDNF-SANVMVDGRTVNLGLWDTAGQEDY   83 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~------~~~~~~---~t~-----~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   83 (159)
                      ....++|+++|+.++|||||+++|+...      ....+.   .+.     +... .....+......+.++|+||++.|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            4457899999999999999999998521      111110   000     0000 011112223346899999999988


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      .......+..+|++++|+|+.+...-...   .++..+..  .++| ++++.||+|+..
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~---e~~~~~~~--~gi~~iIvvvNK~Dl~~  211 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQTK---EHILLAKQ--VGVPNMVVFLNKQDQVD  211 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCeEEEEEecccccC
Confidence            77666677889999999998864322222   33333332  2577 788999999864

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.33  E-value=2e-12  Score=95.37  Aligned_cols=117  Identities=18%  Similarity=0.201  Sum_probs=83.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---ccceeeeeEEEEEECCeEEEEEEEeCCCccc-------cccccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY---VPTVFDNFSANVMVDGRTVNLGLWDTAGQED-------YNRLRP   88 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~   88 (159)
                      ...+++++++|..|+|||||+|.|+.+...+..   ..+....+ ....++++  .+.+||+||.++       +.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~  112 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYR  112 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhhcccc--ceEEecCCCcccchhhhHHHHHHHH
Confidence            457789999999999999999999965543221   11111111 12234443  389999999665       555667


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .++...|.++++.+..|+  +...++ +++..+....-+.+++++.|-+|...
T Consensus       113 d~l~~~DLvL~l~~~~dr--aL~~d~-~f~~dVi~~~~~~~~i~~VtQ~D~a~  162 (296)
T COG3596         113 DYLPKLDLVLWLIKADDR--ALGTDE-DFLRDVIILGLDKRVLFVVTQADRAE  162 (296)
T ss_pred             HHhhhccEEEEeccCCCc--cccCCH-HHHHHHHHhccCceeEEEEehhhhhc
Confidence            788999988888998865  555555 77777766665689999999999754

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.31  E-value=2.2e-11  Score=99.24  Aligned_cols=122  Identities=16%  Similarity=0.207  Sum_probs=85.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc------ccccc--
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL------RPLSY--   91 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--   91 (159)
                      +..+++++|+||||||||.|+|.+.+.. .++...+-+.........+..  +++.|+||--.+...      -++|+  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            3467999999999999999999987754 555555444344455555544  899999996544322      23343  


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCC
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPG  151 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~  151 (159)
                      .+.|.+|-|.|.++.+.=..+.. ++++      -+.|++++.|++|..+++.+..+..+
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltl-QLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~  132 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTL-QLLE------LGIPMILALNMIDEAKKRGIRIDIEK  132 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHH-HHHH------cCCCeEEEeccHhhHHhcCCcccHHH
Confidence            35799999999998765443331 2222      26899999999999998888876543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.28  E-value=6e-11  Score=94.98  Aligned_cols=126  Identities=23%  Similarity=0.290  Sum_probs=92.3

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772           15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG   93 (159)
Q Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   93 (159)
                      ......+.+++.++|+.++|||.|++.|+++.+..++..+....+ ...+...+....+.+.|++-. ... .....=..
T Consensus       418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~-~l~~ke~~  495 (625)
T KOG1707|consen  418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQD-FLTSKEAA  495 (625)
T ss_pred             cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccc-cccCccce
Confidence            345667888999999999999999999999998877767666655 345556677777888888753 111 11111178


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      ||+++++||.+++.+|..+.  ..+. +.....+.||++|++|+|+.+..|.
T Consensus       496 cDv~~~~YDsS~p~sf~~~a--~v~~-~~~~~~~~Pc~~va~K~dlDe~~Q~  544 (625)
T KOG1707|consen  496 CDVACLVYDSSNPRSFEYLA--EVYN-KYFDLYKIPCLMVATKADLDEVPQR  544 (625)
T ss_pred             eeeEEEecccCCchHHHHHH--HHHH-HhhhccCCceEEEeeccccchhhhc
Confidence            99999999999999998775  2222 2222258999999999999876543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.27  E-value=1.4e-11  Score=97.44  Aligned_cols=115  Identities=17%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CC------------cccc------------e------eeee-EEEEEECCeEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TD------------YVPT------------V------FDNF-SANVMVDGRTV   70 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~------------~~~t------------~------~~~~-~~~~~~~~~~~   70 (159)
                      ++|+++|+.++|||||+.+|+...-. ..            ...+            .      +.+. .....+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            48999999999999999999743211 10            0000            0      0000 00111222335


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        71 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ++.++|+||++.|.......+..+|++++|+|+.....-+...  .|. .+.. ....+++++.||+|+.+
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~-~~~~-~~~~~iivviNK~D~~~  147 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSY-IASL-LGIRHVVLAVNKMDLVD  147 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHH-HHHH-cCCCcEEEEEEeccccc
Confidence            6899999999988765556788999999999987543222111  111 1111 12346899999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00007 elongation factor G; Reviewed

Probab=99.27  E-value=2.3e-11  Score=101.99  Aligned_cols=116  Identities=13%  Similarity=0.059  Sum_probs=76.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC--C---------------cccceeeeeEEEEEECCeEEEEEEEeCCC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG--NTFPT--D---------------YVPTVFDNFSANVMVDGRTVNLGLWDTAG   79 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~--~---------------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g   79 (159)
                      ..+..+|+++|+.++|||||+++|+.  +....  .               .+...-......+...  ...+++.||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence            34678999999999999999999973  21110  0               0001011111122223  35699999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +..|.......+..+|++|+|+|.......+..   ..+..+..  .+.|++++.||+|+.+
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~---~~~~~~~~--~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE---TVWRQADK--YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH---HHHHHHHH--cCCCEEEEEECCCCCC
Confidence            987766666778899999999998755333332   22233332  3589999999999874

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.26  E-value=1.7e-11  Score=83.03  Aligned_cols=97  Identities=22%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----ccccccccccCCcEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRPLSYRGADVFI   98 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~~~~i   98 (159)
                      .||++||+.|+|||||+++|.+....  |..|...      .+.     =.+.|+||.-.    +.......-.+++.++
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i------~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAI------EYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCC--cCcccee------Eec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            48999999999999999999886643  2222221      111     23589998522    2222223345899999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      ++.|.+++.+.-.-   .+...+     +.|+|=|.||+|+.
T Consensus        69 ll~dat~~~~~~pP---~fa~~f-----~~pvIGVITK~Dl~  102 (143)
T PF10662_consen   69 LLQDATEPRSVFPP---GFASMF-----NKPVIGVITKIDLP  102 (143)
T ss_pred             EEecCCCCCccCCc---hhhccc-----CCCEEEEEECccCc
Confidence            99999986542111   122111     47999999999998

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN03127 Elongation factor Tu; Provisional

Probab=99.26  E-value=5e-11  Score=95.19  Aligned_cols=115  Identities=20%  Similarity=0.171  Sum_probs=72.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC------CCCCCc-----------ccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN------TFPTDY-----------VPTVFDNFSANVMVDGRTVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~------~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~   82 (159)
                      ...++|+++|+.++|||||+++|.+.      .....+           +...-+  .....+.....++.+.|+||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence            46688999999999999999999622      100000           011111  11222333345689999999987


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      |.......+..+|++++|+|..+...-+..   ..+..+..  .++| ++++.||+|+.+
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt~---e~l~~~~~--~gip~iIvviNKiDlv~  191 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQTK---EHILLARQ--VGVPSLVVFLNKVDVVD  191 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCeEEEEEEeeccCC
Confidence            765555556679999999998754322211   22222222  2578 578999999974

>PRK00049 elongation factor Tu; Reviewed

Probab=99.24  E-value=8.4e-11  Score=92.74  Aligned_cols=117  Identities=21%  Similarity=0.177  Sum_probs=74.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CC---cc-----c---ceeeee-EEEEEECCeEEEEEEEeCCCccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP---TD---YV-----P---TVFDNF-SANVMVDGRTVNLGLWDTAGQEDYN   84 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~---~~-----~---t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   84 (159)
                      ...++|+++|+.++|||||+++|++....   ..   +.     +   ..+.+. .....+.....++.+.|+||+..|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            46689999999999999999999863110   00   00     0   000000 1122233334568899999998877


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEE-EEeeCccccc
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIV-LVGTKLDLRK  141 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~  141 (159)
                      ......+..+|++++|+|+.+...-...   .++..+..  .++|++ ++.||+|+..
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~---~~~~~~~~--~g~p~iiVvvNK~D~~~  142 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchHHH---HHHHHHHH--cCCCEEEEEEeecCCcc
Confidence            6666677899999999998864322211   33333332  257865 6899999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.23  E-value=3.7e-11  Score=99.86  Aligned_cols=118  Identities=18%  Similarity=0.076  Sum_probs=71.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CC-----------cccc--eeeee------------------EEEEEECC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TD-----------YVPT--VFDNF------------------SANVMVDG   67 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~-----------~~~t--~~~~~------------------~~~~~~~~   67 (159)
                      ...++|+++|++++|||||+++|+...-. ..           ...+  ....+                  .....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            45578999999999999999999854311 10           0001  00000                  00111222


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ...++.++|+||++.|.......+..+|++++|+|+.....-+..   ..+..+.. ....+++|+.||+|+.+
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~---e~~~~~~~-~~~~~iivvvNK~D~~~  171 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR---RHSFIASL-LGIRHVVLAVNKMDLVD  171 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH---HHHHHHHH-hCCCeEEEEEEeccccc
Confidence            234578999999988765545567899999999998754322111   11111211 12357899999999864

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.22  E-value=3.5e-11  Score=102.62  Aligned_cols=117  Identities=15%  Similarity=0.104  Sum_probs=78.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccc-e-----------eeee---EEEEEE--------------CC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPT-V-----------FDNF---SANVMV--------------DG   67 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t-~-----------~~~~---~~~~~~--------------~~   67 (159)
                      +.+..+|+|+|+.++|||||+.+|+...-.  .....+ .           +...   ...+..              .+
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            456789999999999999999999854311  100000 0           0000   011111              12


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      ..+.++++|+||+..|.......+..+|++|+|+|+...-......  .|-..+.   .++|++++.||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~--~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH--HHHHHHH---CCCCEEEEEECCccc
Confidence            3567899999999999888888889999999999988654333222  3332222   378999999999987

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.21  E-value=4.5e-11  Score=95.48  Aligned_cols=116  Identities=13%  Similarity=0.052  Sum_probs=74.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CC----Cc------------------ccce-ee--ee---EEEEEECCeE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PT----DY------------------VPTV-FD--NF---SANVMVDGRT   69 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~----~~------------------~~t~-~~--~~---~~~~~~~~~~   69 (159)
                      ...++|+++|+.++|||||+.+|+...-  ..    .+                  .... +.  ..   .....+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            4568999999999999999998874221  00    00                  0000 00  00   0111233345


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHH-------hhhhhhHHHHHhhhCCCC-CEEEEeeCcccc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYE-------NISKKKWVPELRHYAPSV-PIVLVGTKLDLR  140 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~i~~~~~~~-piilv~nK~Dl~  140 (159)
                      ..+.+.|+||+++|.......+..+|++|+|+|+.+ ..|+       ...  +.+..+.  ..++ +++|+.||+|+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~--eh~~~~~--~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTR--EHALLAF--TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHH--HHHHHHH--HcCCCcEEEEEEcccCC
Confidence            678999999999999888888999999999999986 3332       111  1111111  1256 478899999986

>PRK12740 elongation factor G; Reviewed

Probab=99.21  E-value=2.9e-11  Score=101.12  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             EcCCCCCHHHHHHHHhcCCCC--C--Cccc--ce----------eeee-EEEEEECCeEEEEEEEeCCCccccccccccc
Q 044772           28 VRDGAVGKTCLLISYTGNTFP--T--DYVP--TV----------FDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLS   90 (159)
Q Consensus        28 vG~~~~GKSsli~~l~~~~~~--~--~~~~--t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   90 (159)
                      +|+.++|||||+++|+...-.  .  ....  +.          +.+. .....+....+.+++||+||+..|...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999643211  0  0000  00          0000 1111222234679999999998887777788


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +..+|++++|+|.+.........  .| ..+..  .++|+++|+||+|+...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~--~~-~~~~~--~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTET--VW-RQAEK--YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHH--HH-HHHHH--cCCCEEEEEECCCCCCC
Confidence            99999999999998765554432  23 22322  36899999999998753

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.21  E-value=1.3e-10  Score=87.28  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCCc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRL---RPLSYRGAD   95 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~   95 (159)
                      .+=+||-|++|||||++++...+- ...|..|+-.-....+..++ ...+.+-|+||--.    -+.+   .-..+++|.
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            466899999999999999987663 23444443221111223332 23489999998422    1222   122357899


Q ss_pred             EEEEEEeCCCh---hhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccc
Q 044772           96 VFILAFSLISR---PSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLR  140 (159)
Q Consensus        96 ~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~  140 (159)
                      .++||+|++..   +-++.++  .+..++..+.   .+.|.+||+||+|++
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~--lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQ--LLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHH--HHHHHHHHHhhhhccCceEEEEeccCch
Confidence            99999999987   6666666  5566666554   378999999999995

>PTZ00416 elongation factor 2; Provisional

Probab=99.20  E-value=5.7e-11  Score=101.26  Aligned_cols=117  Identities=13%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccce------ee----ee-----EEEEEEC--------CeEEEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTV------FD----NF-----SANVMVD--------GRTVNLG   73 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~------~~----~~-----~~~~~~~--------~~~~~~~   73 (159)
                      ..+..+|+++|+.++|||||+.+|+...-  ......+.      ..    ..     ...+..+        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            34567999999999999999999985321  11000000      00    00     0011111        2256789


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      +.||||+..|.......+..+|++|+|+|+.+.-.....   ..+..+..  .++|++++.||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~---~~~~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE---TVLRQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH---HHHHHHHH--cCCCEEEEEEChhhh
Confidence            999999998887778888999999999998864333322   22233322  358999999999986

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.19  E-value=1e-10  Score=84.86  Aligned_cols=117  Identities=22%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCc-c--cceeeeeEEEEEECCeEEEEEEEeCCCccccc-------ccc----c
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDY-V--PTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN-------RLR----P   88 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~----~   88 (159)
                      ++|+|+|.+|+||||++|.+++....... .  +............++..  +.++||||-....       ..+    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999987753221 1  11111112233556654  7899999942211       111    1


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ...+..+++++|+... +-+-.+.....++..+....--.-++||.|..|....
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~  131 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED  131 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence            2346799999999988 2222222211333333221111347788887775443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=2.2e-10  Score=90.34  Aligned_cols=121  Identities=24%  Similarity=0.218  Sum_probs=78.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cccc--------cc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRL--------RP   88 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--------~~   88 (159)
                      ...++|+++|+||||||||+|.|.+....  +.-..|+.+.....++++|  +.+.+.||.|--+ -...        -+
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence            45589999999999999999999977643  3334444454444556666  4588999999533 1111        12


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-------CCCCEEEEeeCcccccC
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-------PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-------~~~piilv~nK~Dl~~~  142 (159)
                      ..+..+|.+++|+|....+.-.++.-.+.++......       .+.|++++.||+|+...
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            2367899999999994322222222114444333221       35899999999998654

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.16  E-value=2.2e-10  Score=86.51  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCC---
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA---   94 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~---   94 (159)
                      -+...+|+|+|..++|||||+.+|.+.+. .+.....+..|-. +....+...++.+|-+.|.-....+....+...   
T Consensus        49 lpsgk~VlvlGdn~sGKtsLi~klqg~e~-~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   49 LPSGKNVLVLGDNGSGKTSLISKLQGSET-VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCCCeEEEEccCCCchhHHHHHhhcccc-cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            34557899999999999999999998662 2323333443321 222223456788999999877777766666543   


Q ss_pred             c-EEEEEEeCCChhhHHhhhhhhHHHHHhhh
Q 044772           95 D-VFILAFSLISRPSYENISKKKWVPELRHY  124 (159)
Q Consensus        95 ~-~~i~v~d~~~~~s~~~~~~~~~~~~i~~~  124 (159)
                      + .+|++.|++++|...+... .|..-+.++
T Consensus       128 etlviltasms~Pw~~lesLq-kWa~Vl~eh  157 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQ-KWASVLREH  157 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHH-HHHHHHHHH
Confidence            2 5789999999987644333 776554443

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.15  E-value=5.9e-11  Score=87.66  Aligned_cols=124  Identities=15%  Similarity=0.216  Sum_probs=74.6

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce--------eeeeEEEEE---------------E-------
Q 044772           16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV--------FDNFSANVM---------------V-------   65 (159)
Q Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------~~~~~~~~~---------------~-------   65 (159)
                      +....++.-|+++|..|+|||||++||...-......|-.        ..-|...+.               .       
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~   92 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV   92 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence            3345567889999999999999999997543322111100        000000000               0       


Q ss_pred             -------------------CCeEEEEEEEeCCCc-ccc-----cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHH
Q 044772           66 -------------------DGRTVNLGLWDTAGQ-EDY-----NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE  120 (159)
Q Consensus        66 -------------------~~~~~~~~i~D~~g~-~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  120 (159)
                                         ......+.+.||||| +.|     ...+...+....-.|++|-++.+.+-...   .|+.+
T Consensus        93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~---tFMSN  169 (366)
T KOG1532|consen   93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPT---TFMSN  169 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCch---hHHHH
Confidence                               012356889999998 333     23444555555556666666555443332   77777


Q ss_pred             HhhhC-----CCCCEEEEeeCcccccC
Q 044772          121 LRHYA-----PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       121 i~~~~-----~~~piilv~nK~Dl~~~  142 (159)
                      +...+     -++|+|++.||+|+.+.
T Consensus       170 MlYAcSilyktklp~ivvfNK~Dv~d~  196 (366)
T KOG1532|consen  170 MLYACSILYKTKLPFIVVFNKTDVSDS  196 (366)
T ss_pred             HHHHHHHHHhccCCeEEEEeccccccc
Confidence            66554     38999999999999764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.14  E-value=1.1e-09  Score=82.64  Aligned_cols=89  Identities=22%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-cc---c---ccccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-DY---N---RLRPL   89 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~---~---~~~~~   89 (159)
                      .++...++++||.|+||||||+++|.+.+.. ..|..|+-......+.+++  .++++.|+||-- -.   .   ...-.
T Consensus        59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls  136 (365)
T COG1163          59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS  136 (365)
T ss_pred             eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence            4556678999999999999999999977643 4566665554555566666  458999999731 11   1   23345


Q ss_pred             cccCCcEEEEEEeCCChhh
Q 044772           90 SYRGADVFILAFSLISRPS  108 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s  108 (159)
                      ..++||.+++|.|+.....
T Consensus       137 v~R~ADlIiiVld~~~~~~  155 (365)
T COG1163         137 VARNADLIIIVLDVFEDPH  155 (365)
T ss_pred             eeccCCEEEEEEecCCChh
Confidence            6789999999999985554

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.14  E-value=4e-10  Score=90.10  Aligned_cols=116  Identities=15%  Similarity=0.072  Sum_probs=73.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------------Cccc-ceeeeeE---EEEEECCeE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT--FPT------------------------DYVP-TVFDNFS---ANVMVDGRT   69 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------------------------~~~~-t~~~~~~---~~~~~~~~~   69 (159)
                      ...++|+++|+.++|||||+.+|+...  ...                        +..+ ..+...+   ....+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            456899999999999999999997521  110                        0000 0000000   111223344


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---H---HhhhhhhHHHHHhhhCCCCC-EEEEeeCccc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS---Y---ENISKKKWVPELRHYAPSVP-IVLVGTKLDL  139 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl  139 (159)
                      ..+.+.|+||+.+|.......+..+|++++|+|+.....   |   ....  +.+..+..  .++| ++++.||+|.
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~--eh~~~~~~--~gi~~iiv~vNKmD~  157 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTR--EHALLAFT--LGVKQMIVCINKMDD  157 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHH--HHHHHHHH--cCCCeEEEEEEcccc
Confidence            679999999999998877777889999999999886421   1   1111  11221211  2555 7899999994

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.11  E-value=3.7e-10  Score=95.23  Aligned_cols=117  Identities=17%  Similarity=0.087  Sum_probs=76.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc-cc--c----ee------ee---eEEEE--EECCeEEEEEEEeCCC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDY-VP--T----VF------DN---FSANV--MVDGRTVNLGLWDTAG   79 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~-~~--t----~~------~~---~~~~~--~~~~~~~~~~i~D~~g   79 (159)
                      ..+..+|+++|+.++|||||+.+|+...- .... ..  +    ..      .+   ....+  ..++..+.++++||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            34667899999999999999999985321 1100 00  0    00      00   00011  1244467799999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      +..|.......+..+|++|+|+|...........  .|.....   .+.|++++.||+|+.
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~--~~~~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET--VLRQALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHH--HHHHHHH---cCCCeEEEEECchhh
Confidence            9988877788889999999999987643322221  3332222   256889999999975

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.09  E-value=1.3e-09  Score=82.73  Aligned_cols=115  Identities=23%  Similarity=0.188  Sum_probs=75.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCCcE
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRL---RPLSYRGADV   96 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~~   96 (159)
                      |=+||-|++|||||++.+...+- ..+|.-|+-.-.-..+.+++ .-.|.+-|+||--.    =..+   .-..+.+|..
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            55899999999999999986653 34555554322222333322 12388999998311    1111   1233568999


Q ss_pred             EEEEEeCCChhh---HHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccC
Q 044772           97 FILAFSLISRPS---YENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        97 ~i~v~d~~~~~s---~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  142 (159)
                      ++.|+|++..+.   .+...  ....++..|.   .+.|.+||+||+|+...
T Consensus       241 L~hviD~s~~~~~dp~~~~~--~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~  290 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQ--TIRNELEKYSPKLAEKPRIVVLNKIDLPLD  290 (369)
T ss_pred             eEEEEecCcccCCCHHHHHH--HHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence            999999986553   34444  6666777765   37899999999996543

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.08  E-value=4.6e-10  Score=86.19  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHH-------hhhh-hhHHHHHhhhC--CCCCEEEEeeCccc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYE-------NISK-KKWVPELRHYA--PSVPIVLVGTKLDL  139 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~-~~~~~~i~~~~--~~~piilv~nK~Dl  139 (159)
                      ..+.++|.|||-.-+..|.++|.+++++|||.++++-+...       .+.+ ..+++.|..+.  .+.++||+.||.||
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            56889999999888899999999999999999988544321       1111 25566666554  48999999999999


Q ss_pred             ccCcccccc
Q 044772          140 RKDRQFHLD  148 (159)
Q Consensus       140 ~~~r~v~~~  148 (159)
                      -+.+.....
T Consensus       275 FeEKi~~~~  283 (354)
T KOG0082|consen  275 FEEKIKKVP  283 (354)
T ss_pred             HHHHhccCc
Confidence            877665544

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.08  E-value=2.1e-10  Score=88.96  Aligned_cols=112  Identities=18%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccce--eeee-EEEEEECCeEEEEEEEeCCCccccccc-----cccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV--FDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL-----RPLS   90 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~--~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~   90 (159)
                      ...++|+|+|.+|+|||||||.|.+-... +...++.  +.+. ...+.... .-.+.+||+||.....-.     ....
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            35689999999999999999999753222 1112221  2111 11222221 123889999996432211     1233


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      +...|.+|++.+    +.|...+. .+...+.+.  +.|+.+|-+|+|.
T Consensus       112 ~~~yD~fiii~s----~rf~~ndv-~La~~i~~~--gK~fyfVRTKvD~  153 (376)
T PF05049_consen  112 FYRYDFFIIISS----ERFTENDV-QLAKEIQRM--GKKFYFVRTKVDS  153 (376)
T ss_dssp             GGG-SEEEEEES----SS--HHHH-HHHHHHHHT--T-EEEEEE--HHH
T ss_pred             ccccCEEEEEeC----CCCchhhH-HHHHHHHHc--CCcEEEEEecccc
Confidence            567888887666    45655542 444555543  6889999999996

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.05  E-value=1.4e-09  Score=86.97  Aligned_cols=88  Identities=15%  Similarity=0.209  Sum_probs=61.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEE--CCeEEEEEEEeCCCcccccccccccccC---
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMV--DGRTVNLGLWDTAGQEDYNRLRPLSYRG---   93 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~---   93 (159)
                      .....|+|+|..++|||||+.+|.+.+   .+.++.+-.|.+ .+..  .+...++.+|.+.|...+..+++..+..   
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345789999999999999999997644   234444444432 1211  2234679999999877777666555543   


Q ss_pred             -CcEEEEEEeCCChhhHH
Q 044772           94 -ADVFILAFSLISRPSYE  110 (159)
Q Consensus        94 -~~~~i~v~d~~~~~s~~  110 (159)
                       --.+|+|.|++.|+.+-
T Consensus       100 ~~t~vvIvlDlS~PW~~~  117 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIM  117 (472)
T ss_pred             cceEEEEEecCCChHHHH
Confidence             22688999999999864

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.05  E-value=5.7e-09  Score=78.75  Aligned_cols=115  Identities=14%  Similarity=0.158  Sum_probs=68.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----------cceee-eeEEEEEECCeEEEEEEEeCCCcccccc----
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV----------PTVFD-NFSANVMVDGRTVNLGLWDTAGQEDYNR----   85 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----------~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~----   85 (159)
                      ..++|+|+|.+|+|||||++.|++........          .+... .....+.-++..+.+.++||||......    
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            56899999999999999999999876543310          11111 1123444567889999999998332110    


Q ss_pred             ---------------------cccccc--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           86 ---------------------LRPLSY--RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        86 ---------------------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                                           ..+..+  ...|+++++.+.+.. ....++    ++.+++....+++|-|..|+|.-
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D----i~~mk~Ls~~vNvIPvIaKaD~l  155 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD----IEFMKRLSKRVNVIPVIAKADTL  155 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH----HHHHHHHTTTSEEEEEESTGGGS
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH----HHHHHHhcccccEEeEEeccccc
Confidence                                 001111  247788888887642 333333    33444445578999999999974

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.04  E-value=2.2e-09  Score=83.27  Aligned_cols=118  Identities=19%  Similarity=0.161  Sum_probs=78.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccc-------cc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLR-------PL   89 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~   89 (159)
                      .....|.++|-.|+|||||+|.|.+....  .....|...+.+ .+.+.+ ...+.+-||-|.-. .....       -.
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR-~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR-RIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCcee-EEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence            34568999999999999999999966543  334445554443 334443 23477889888421 11111       11


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK  141 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  141 (159)
                      -...+|.++.|+|++++.....+.  .-..-+.+.. ..+|+++|.||+|+..
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~--~v~~vL~el~~~~~p~i~v~NKiD~~~  318 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLE--AVEDVLAEIGADEIPIILVLNKIDLLE  318 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHH--HHHHHHHHcCCCCCCEEEEEecccccC
Confidence            235799999999999996666555  4444444442 4699999999999654

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.04  E-value=4.8e-10  Score=85.90  Aligned_cols=80  Identities=25%  Similarity=0.260  Sum_probs=53.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-CCc-----ccceeeeeEEE----------------EEECC-eEEEEEEEeCCCc-
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFP-TDY-----VPTVFDNFSAN----------------VMVDG-RTVNLGLWDTAGQ-   80 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~-~~~-----~~t~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~-   80 (159)
                      |.++|.++||||||+++|.+.... .+|     .|+.+..+...                ...++ ..+.+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            578999999999999999987753 122     23333222110                00122 4477999999997 


Q ss_pred             ---ccccccccc---cccCCcEEEEEEeCC
Q 044772           81 ---EDYNRLRPL---SYRGADVFILAFSLI  104 (159)
Q Consensus        81 ---~~~~~~~~~---~~~~~~~~i~v~d~~  104 (159)
                         +....+...   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               334443333   488999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01882 BMS1 Bms1

Probab=99.03  E-value=1.9e-09  Score=78.95  Aligned_cols=109  Identities=22%  Similarity=0.183  Sum_probs=65.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .....|+++|.+|+|||+|++.+.............+. +  .+ .......+.++|+||.-  ..+ ....+.+|.+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll  109 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL  109 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence            44577999999999999999999864221111111111 1  11 11233458899999853  212 233578999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLR  140 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~  140 (159)
                      ++|..........   .++..+...  +.| +++|.||+|+.
T Consensus       110 viDa~~~~~~~~~---~i~~~l~~~--g~p~vi~VvnK~D~~  146 (225)
T cd01882         110 LIDASFGFEMETF---EFLNILQVH--GFPRVMGVLTHLDLF  146 (225)
T ss_pred             EEecCcCCCHHHH---HHHHHHHHc--CCCeEEEEEeccccC
Confidence            9998754332221   334433332  466 45699999985

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=3.2e-09  Score=84.63  Aligned_cols=117  Identities=19%  Similarity=0.163  Sum_probs=83.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-eeeEEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      +..=|+++|+-.-|||||+..+-+.+........+. .....++..+. ..-.+.|.||||++.|..++..-..-+|++|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            445689999999999999999987776544333322 22244555541 2235899999999999999999889999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +|++++|--.-+.+..+...+.     .++|++++.||+|.++.
T Consensus        84 LVVa~dDGv~pQTiEAI~hak~-----a~vP~iVAiNKiDk~~~  122 (509)
T COG0532          84 LVVAADDGVMPQTIEAINHAKA-----AGVPIVVAINKIDKPEA  122 (509)
T ss_pred             EEEEccCCcchhHHHHHHHHHH-----CCCCEEEEEecccCCCC
Confidence            9999997543333321111221     47999999999999743

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.01  E-value=1.4e-09  Score=75.66  Aligned_cols=62  Identities=19%  Similarity=0.124  Sum_probs=41.9

Q ss_pred             EEEEeCCCccc----ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCc
Q 044772           72 LGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL  137 (159)
Q Consensus        72 ~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~  137 (159)
                      +.|+|+||...    ....+..+++.+|++|+|.+.++..+-....  .|.+......  ..+++|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~--~l~~~~~~~~--~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME--FLKQMLDPDK--SRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH--HHHHHHTTTC--SSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH--HHHHHhcCCC--CeEEEEEcCC
Confidence            67899999643    2245677889999999999999755544333  4554444433  3489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK09866 hypothetical protein; Provisional

Probab=98.99  E-value=2.7e-09  Score=87.37  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCcccc-----cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           70 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        70 ~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .++.+.||||-...     .......+..+|.++||+|.....+..+.   ..++.+.+...+.|+++|.||+|+.+
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De---eIlk~Lkk~~K~~PVILVVNKIDl~d  303 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE---EVREAILAVGQSVPLYVLVNKFDQQD  303 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH---HHHHHHHhcCCCCCEEEEEEcccCCC
Confidence            34678999996432     11223468899999999999865444432   44555555444469999999999853

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.99  E-value=3.6e-09  Score=86.91  Aligned_cols=118  Identities=15%  Similarity=0.138  Sum_probs=70.4

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCc--ccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNT-FPTDY--VPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR---------   85 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------   85 (159)
                      +-...++|+|+|.+|+||||++|.|++.. +....  ..|... .......++  ..+.++||||-.....         
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL  190 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL  190 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence            33466899999999999999999999876 33221  122221 111122344  4589999999653311         


Q ss_pred             -ccccccc--CCcEEEEEEeCCChhhH-HhhhhhhHHHHHhhhCC---CCCEEEEeeCccccc
Q 044772           86 -LRPLSYR--GADVFILAFSLISRPSY-ENISKKKWVPELRHYAP---SVPIVLVGTKLDLRK  141 (159)
Q Consensus        86 -~~~~~~~--~~~~~i~v~d~~~~~s~-~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  141 (159)
                       ....++.  ..|++++|..++..... .+.   .++..+...+.   -...|||.|+.|...
T Consensus       191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~---~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDL---PLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHhcCCCCEEEEEEeCCCccccHHHH---HHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence             1122333  47899999887633222 222   45555554442   235788888888643

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=4.3e-09  Score=84.22  Aligned_cols=117  Identities=17%  Similarity=0.237  Sum_probs=83.3

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEE-CCeEEEEEEEeCCCcccccccccccccCC
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGA   94 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   94 (159)
                      -..+++.=|.++|.-.=|||||+..|-+..........+.... ...+.. +|  -.+.|.||||+..|..|+.+--.-+
T Consensus       148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vt  225 (683)
T KOG1145|consen  148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVT  225 (683)
T ss_pred             hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccc
Confidence            3445667799999999999999999987665433222221111 223333 34  4589999999999999999988999


Q ss_pred             cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772           95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK  141 (159)
Q Consensus        95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  141 (159)
                      |++|+|+..+|.-.-+.+.      .|.... .++|+++..||+|.++
T Consensus       226 DIvVLVVAadDGVmpQT~E------aIkhAk~A~VpiVvAinKiDkp~  267 (683)
T KOG1145|consen  226 DIVVLVVAADDGVMPQTLE------AIKHAKSANVPIVVAINKIDKPG  267 (683)
T ss_pred             cEEEEEEEccCCccHhHHH------HHHHHHhcCCCEEEEEeccCCCC
Confidence            9999999998754433332      222222 4799999999999874

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=6.9e-09  Score=82.98  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccc------------ceeeee-EE---EEEECCeEEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDYVP------------TVFDNF-SA---NVMVDGRTVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~------------t~~~~~-~~---~~~~~~~~~~~~i~D~~g~~~   82 (159)
                      .+..++.||-+-.=|||||..||+...- ..+...            .-+-+. .+   ....++..+.+++.||||+.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            5677899999999999999999984332 111000            001111 11   222346778999999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      |.....+-+..|+++++++|++..-.-+.+.  .+...+.   .+..+|.|.||+|++..+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~a--nf~lAfe---~~L~iIpVlNKIDlp~ad  193 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVA--NFYLAFE---AGLAIIPVLNKIDLPSAD  193 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHH--HHHHHHH---cCCeEEEeeeccCCCCCC
Confidence            9999999999999999999998655555444  3333333   368899999999998544

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=4.8e-09  Score=81.44  Aligned_cols=130  Identities=14%  Similarity=0.079  Sum_probs=81.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------------cccce-----eeee-EEEEEECCe
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTD----------------------YVPTV-----FDNF-SANVMVDGR   68 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~----------------------~~~t~-----~~~~-~~~~~~~~~   68 (159)
                      ....++++++|+..+|||||+-||+.+.  +...                      ...+.     +.+. .....+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            3467899999999999999999887443  2110                      00000     0111 112223445


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhh--h-hHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISK--K-KWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~--~-~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      .+.+.|.|+||+-.|-.....-...+|+.|+|+|+.+.+....+..  + +=...+.+...--.+|++.||+|+.+.++-
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~  163 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence            5679999999998887766677788999999999997753222111  0 111111222223458999999999876654


Q ss_pred             ccc
Q 044772          146 HLD  148 (159)
Q Consensus       146 ~~~  148 (159)
                      ..+
T Consensus       164 rf~  166 (428)
T COG5256         164 RFE  166 (428)
T ss_pred             HHH
Confidence            443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=6.3e-09  Score=84.86  Aligned_cols=117  Identities=20%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc---------ce----eeeeE-----EEEE---ECCeEEEEEEEe
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP---------TV----FDNFS-----ANVM---VDGRTVNLGLWD   76 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~---------t~----~~~~~-----~~~~---~~~~~~~~~i~D   76 (159)
                      .+....++.++|+-+.|||+|+..|..+..+.-+..         +.    +...+     .++-   ..+..+-++++|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            445778999999999999999999987765432111         11    00000     0111   135668899999


Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        77 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      +||+-.|.......++.+|++++++|+...-.++.-   +.+....+  .+.|+++|.||.|.
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE---r~ikhaiq--~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE---RIIKHAIQ--NRLPIVVVINKVDR  261 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH---HHHHHHHh--ccCcEEEEEehhHH
Confidence            999999999888999999999999999977666544   33332222  47999999999995

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.91  E-value=9.8e-09  Score=80.92  Aligned_cols=82  Identities=26%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccccce-eeeeEE-EE-------------------EEC-CeEEEEEEEeCCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTV-FDNFSA-NV-------------------MVD-GRTVNLGLWDTAG   79 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~-~~~~~~-~~-------------------~~~-~~~~~~~i~D~~g   79 (159)
                      ++|.+||.|+||||||+++|.+..+.. +|..+. ...... .+                   ..+ .....+++||++|
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            589999999999999999999877642 342222 222211 10                   011 2346799999999


Q ss_pred             c----cccccccccc---ccCCcEEEEEEeCC
Q 044772           80 Q----EDYNRLRPLS---YRGADVFILAFSLI  104 (159)
Q Consensus        80 ~----~~~~~~~~~~---~~~~~~~i~v~d~~  104 (159)
                      .    .....+-..+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    2233333334   78999999999996

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.87  E-value=9.8e-10  Score=86.96  Aligned_cols=120  Identities=15%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----cccc----cc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR----LRPL----SY   91 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~----~~   91 (159)
                      ....++++|-|+||||||++.+...... ..|..|..-.+..++  +.....+++.||||--....    .+..    .+
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            4567999999999999999988866643 456555544444332  33445699999999432211    1110    11


Q ss_pred             -cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           92 -RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        92 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                       .--.+++++.|++..=.+.-..-..++..|+....+.|.|+|.||+|+-.-
T Consensus       245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~  296 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP  296 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc
Confidence             112368899998854333222212788888888889999999999998543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.84  E-value=1.7e-08  Score=87.23  Aligned_cols=100  Identities=23%  Similarity=0.300  Sum_probs=65.6

Q ss_pred             CHHHHHHHHhcCCCCCCcccceeeee-EEEEEECC-e----------EE-----EEEEEeCCCcccccccccccccCCcE
Q 044772           34 GKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG-R----------TV-----NLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        34 GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~----------~~-----~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      +||||+.++.+..........+.... ...+..+. .          ..     .+.+|||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            39999999987776543222221111 11122211 0          01     27999999999998887778888999


Q ss_pred             EEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           97 FILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        97 ~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +++|+|+++   +.++..+.      .+..  .++|+++|+||+|+..
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~------~lk~--~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN------ILRQ--YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH------HHHH--cCCCEEEEEECCCCcc
Confidence            999999986   34443332      2222  2689999999999964

>PRK13768 GTPase; Provisional

Probab=98.83  E-value=3.8e-09  Score=78.66  Aligned_cols=72  Identities=17%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             EEEEEeCCCccccc---cccccc---ccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           71 NLGLWDTAGQEDYN---RLRPLS---YRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        71 ~~~i~D~~g~~~~~---~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      .+.+||+||+....   ..+..+   +..  .+++++++|.....+........|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            58899999975532   222222   222  7899999999765544443332444433333347999999999998654

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.83  E-value=1.7e-08  Score=79.61  Aligned_cols=72  Identities=18%  Similarity=0.258  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh----------HHhhhhhhHHHHHhhhC--CCCCEEEEeeCc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS----------YENISKKKWVPELRHYA--PSVPIVLVGTKL  137 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~i~~~~--~~~piilv~nK~  137 (159)
                      ..+.++|.+|+...+..|.++|.+.+++|||+++++-+.          +.+..  .+++.+....  .+.|++|+.||.
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl--~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESL--NLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHH--HHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHH--HHHHHHHhCcccccCceEEeeecH
Confidence            458999999998889999999999999999999864322          22222  4555555432  489999999999


Q ss_pred             ccccCc
Q 044772          138 DLRKDR  143 (159)
Q Consensus       138 Dl~~~r  143 (159)
                      |+-.++
T Consensus       314 D~f~~K  319 (389)
T PF00503_consen  314 DLFEEK  319 (389)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            986543

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=1.3e-08  Score=69.23  Aligned_cols=53  Identities=19%  Similarity=0.163  Sum_probs=36.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-eeeEEEEEECCeEEEEEEEeCCCc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      +++++|.+|+|||||+|++.+...... ....+ ......+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            899999999999999999998775421 11111 11233334444   4789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=2.7e-08  Score=83.07  Aligned_cols=118  Identities=20%  Similarity=0.107  Sum_probs=82.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc--cc----c---e------eee-eEEEEEECCe-EEEEEEEeCCCc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDY--VP----T---V------FDN-FSANVMVDGR-TVNLGLWDTAGQ   80 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~--~~----t---~------~~~-~~~~~~~~~~-~~~~~i~D~~g~   80 (159)
                      ..+..+|-++|+-.+|||||..+++...- ....  ..    +   .      +.+ .+.....-.. .+.+++.||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            56778999999999999999999983321 1110  00    0   0      011 1111122223 478999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      -+|.......++-+|++|+|+|+...-..+.-.  -|.+....   ++|.+++.||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt--v~rqa~~~---~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET--VWRQADKY---GVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHH--HHHHHhhc---CCCeEEEEECccccc
Confidence            999999999999999999999998654444443  55554433   789999999999753

>smart00053 DYNc Dynamin, GTPase

Probab=98.81  E-value=4.6e-08  Score=72.13  Aligned_cols=68  Identities=19%  Similarity=0.105  Sum_probs=41.2

Q ss_pred             EEEEEEeCCCcccc-------------cccccccccC-CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEee
Q 044772           70 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGT  135 (159)
Q Consensus        70 ~~~~i~D~~g~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~n  135 (159)
                      ..+.+.|+||-...             ..+...|+++ .+++++|.|+...-.-....  .+...+..  ...|+++|.|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l--~ia~~ld~--~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL--KLAKEVDP--QGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH--HHHHHHHH--cCCcEEEEEE
Confidence            45789999996421             1234556774 45888889876432211111  22222222  3689999999


Q ss_pred             Cccccc
Q 044772          136 KLDLRK  141 (159)
Q Consensus       136 K~Dl~~  141 (159)
                      |+|..+
T Consensus       201 K~D~~~  206 (240)
T smart00053      201 KLDLMD  206 (240)
T ss_pred             CCCCCC
Confidence            999864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.80  E-value=3e-08  Score=78.19  Aligned_cols=119  Identities=16%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcc-------c-cee-----eeeEEEEEECCeEEEEEEEeCCCcccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYV-------P-TVF-----DNFSANVMVDGRTVNLGLWDTAGQEDYNR   85 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~-------~-t~~-----~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   85 (159)
                      ...+|++|-+-.=|||||+..|+.+.  |.....       . ..+     ....+...+....+++++.||||+..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            34689999999999999999998665  322100       0 001     11233334455567899999999999999


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      .....+.-.|++++++|+.+..--+.--  -+-+.+.   .+.+-|+|.||+|.+..|.
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQTrF--VlkKAl~---~gL~PIVVvNKiDrp~Arp  137 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQTRF--VLKKALA---LGLKPIVVINKIDRPDARP  137 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCchhh--hHHHHHH---cCCCcEEEEeCCCCCCCCH
Confidence            9999999999999999988643222111  1111111   3678889999999987664

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=1.7e-08  Score=73.57  Aligned_cols=115  Identities=16%  Similarity=0.247  Sum_probs=74.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEE---EECCeEEEEEEEeCCCccccccc---ccccccCC
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV---MVDGRTVNLGLWDTAGQEDYNRL---RPLSYRGA   94 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~   94 (159)
                      .+.+|+++|...+||||+..-. -.+..++  .|.-.+.+..+   .+.+..+.+++||.|||-.+...   ....++.+
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVV-FhkMsPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~  102 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVV-FHKMSPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV  102 (347)
T ss_pred             CCceEEEEeecccCcchhhhee-eeccCCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence            3456999999999999985433 3333333  12211111111   23446788999999999655432   24458899


Q ss_pred             cEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           95 DVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        95 ~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      .++|+|.|..+. -.+.+.. +.......+.++++.+-+..+|.|-
T Consensus       103 gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDG  147 (347)
T KOG3887|consen  103 GALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDG  147 (347)
T ss_pred             CeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccC
Confidence            999999998853 3333331 1334444455689999999999995

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.74  E-value=8.4e-09  Score=67.77  Aligned_cols=104  Identities=26%  Similarity=0.221  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc----ccccccCCcEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL----RPLSYRGADVFI   98 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~~~~~~~~i   98 (159)
                      .|+++||..|+|||+|.+.|.+....  |..|...+|      ++.    -..|+||.---...    +.....+++.++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhh--hcccceeec------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            47999999999999999999876643  223333222      221    14578874221222    233356899999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      +|-+++++++.-.       ..+.... ..|+|=|.+|.||+++..++
T Consensus        70 ~v~~and~~s~f~-------p~f~~~~-~k~vIgvVTK~DLaed~dI~  109 (148)
T COG4917          70 YVHAANDPESRFP-------PGFLDIG-VKKVIGVVTKADLAEDADIS  109 (148)
T ss_pred             eeecccCccccCC-------ccccccc-ccceEEEEecccccchHhHH
Confidence            9999999876321       1111111 34589999999999665554

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.73  E-value=2.2e-07  Score=71.38  Aligned_cols=117  Identities=18%  Similarity=0.216  Sum_probs=74.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------cccceeeee-EEEEEECCeEEEEEEEeCCCcccccc--
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD----------YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR--   85 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--   85 (159)
                      ....++|+++|++|.|||||+|.|++......          ..++..... ...+.-++..+.+.+.||||...+..  
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs   99 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS   99 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence            45678999999999999999999998754332          122332222 33444567789999999999433211  


Q ss_pred             -cc----------------------cc-ccc--CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           86 -LR----------------------PL-SYR--GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        86 -~~----------------------~~-~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                       +|                      +. .+.  +.|++++....+. .....++. ..|..+..   .+.+|=|.-|+|.
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DI-e~Mk~ls~---~vNlIPVI~KaD~  174 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDI-EAMKRLSK---RVNLIPVIAKADT  174 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHH-HHHHHHhc---ccCeeeeeecccc
Confidence             11                      11 122  4677777777653 34555543 55555554   5677778889996


Q ss_pred             c
Q 044772          140 R  140 (159)
Q Consensus       140 ~  140 (159)
                      -
T Consensus       175 l  175 (373)
T COG5019         175 L  175 (373)
T ss_pred             C
Confidence            3

>PTZ00258 GTP-binding protein; Provisional

Probab=98.73  E-value=2.4e-08  Score=78.32  Aligned_cols=84  Identities=19%  Similarity=0.102  Sum_probs=54.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccce-eeeeEEEEEECCe---------------EEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV-FDNFSANVMVDGR---------------TVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   82 (159)
                      ....+|.+||.||||||||+|+|.+.... .+|..++ .... ..+.+.+.               ..++.+.|+||-..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~-g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNT-ARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceE-EEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            45679999999999999999999876643 3344333 2222 22222221               23589999999432


Q ss_pred             c-------cccccccccCCcEEEEEEeCC
Q 044772           83 Y-------NRLRPLSYRGADVFILAFSLI  104 (159)
Q Consensus        83 ~-------~~~~~~~~~~~~~~i~v~d~~  104 (159)
                      -       .......++++|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1       111223467899999999973

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.72  E-value=1.4e-07  Score=74.05  Aligned_cols=115  Identities=13%  Similarity=0.157  Sum_probs=73.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC----CCC-------------CCcc----cceeeee----EEEEE-ECCeEEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGN----TFP-------------TDYV----PTVFDNF----SANVM-VDGRTVNLGL   74 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~----~~~-------------~~~~----~t~~~~~----~~~~~-~~~~~~~~~i   74 (159)
                      ..+-|.++|+-++|||||+++|.+.    ...             ++..    .|.+..+    ..++. .++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3467999999999999999999988    322             1111    2334444    11222 2455678999


Q ss_pred             EeCCCccccc--------c------cc---------------ccccc-CCcEEEEEE-eCC----ChhhHHhhhhhhHHH
Q 044772           75 WDTAGQEDYN--------R------LR---------------PLSYR-GADVFILAF-SLI----SRPSYENISKKKWVP  119 (159)
Q Consensus        75 ~D~~g~~~~~--------~------~~---------------~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~  119 (159)
                      .||.|...-.        .      -|               +.-+. .+++.|+|. |.+    .++.+..... +|+.
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe-~~i~  174 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE-RVIE  174 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH-HHHH
Confidence            9999843211        0      01               11123 677778777 653    2234555554 7888


Q ss_pred             HHhhhCCCCCEEEEeeCcc
Q 044772          120 ELRHYAPSVPIVLVGTKLD  138 (159)
Q Consensus       120 ~i~~~~~~~piilv~nK~D  138 (159)
                      +++..  ++|+++|.||+|
T Consensus       175 eLk~~--~kPfiivlN~~d  191 (492)
T TIGR02836       175 ELKEL--NKPFIILLNSTH  191 (492)
T ss_pred             HHHhc--CCCEEEEEECcC
Confidence            87763  599999999999

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.71  E-value=4.6e-08  Score=78.43  Aligned_cols=120  Identities=14%  Similarity=0.102  Sum_probs=73.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCC---CCC--cccceeeeeEEE------------E--EEC------------
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF---PTD--YVPTVFDNFSAN------------V--MVD------------   66 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~--~~~t~~~~~~~~------------~--~~~------------   66 (159)
                      .....++|.++|+-..|||||+..|.+...   ...  ..-|+.-.|...            .  ...            
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            446778999999999999999999986432   110  000111111100            0  000            


Q ss_pred             C----eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           67 G----RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        67 ~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .    ....+.+.|+||++.|.......+..+|++++|+|+.+.. ..+..   ..+.. .....-.+++++.||+|+.+
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~---ehl~i-~~~lgi~~iIVvlNKiDlv~  185 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS---EHLAA-VEIMKLKHIIILQNKIDLVK  185 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH---HHHHH-HHHcCCCcEEEEEecccccC
Confidence            0    0135889999999988776666677899999999998631 22111   11211 11112346899999999874

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.70  E-value=1.4e-07  Score=74.67  Aligned_cols=120  Identities=19%  Similarity=0.134  Sum_probs=84.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC--------------ccc-cee-eeeEEEEE-ECCeEEEEEEEeCC
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF--PTD--------------YVP-TVF-DNFSANVM-VDGRTVNLGLWDTA   78 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~--------------~~~-t~~-~~~~~~~~-~~~~~~~~~i~D~~   78 (159)
                      ......++.+|-+-.=|||||..||+...-  ...              .+. |+. ....-... -++..+.+++.|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            345667899999999999999999974332  110              000 110 00111112 24578999999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |+-.|.....+.+..|.++++++|++..-.-+.+.  ..+..+.   .+.-++-|.||+||+..
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlA--N~YlAle---~~LeIiPViNKIDLP~A  143 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA--NVYLALE---NNLEIIPVLNKIDLPAA  143 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHH--HHHHHHH---cCcEEEEeeecccCCCC
Confidence            99999999999999999999999998655555554  4444443   37889999999999853

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.69  E-value=5.7e-08  Score=75.46  Aligned_cols=81  Identities=21%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccce-eeeeEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV-FDNFSANVMVDGR---------------TVNLGLWDTAGQEDYN-   84 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-   84 (159)
                      ++|.+||.|+||||||+++|.+.... .+|..++ .... ..+.+.+.               ...+.+.|+||-..-. 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~-G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV-GVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE-EEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            68999999999999999999987743 3333333 2222 22222221               1358999999943211 


Q ss_pred             ------ccccccccCCcEEEEEEeCC
Q 044772           85 ------RLRPLSYRGADVFILAFSLI  104 (159)
Q Consensus        85 ------~~~~~~~~~~~~~i~v~d~~  104 (159)
                            ......++.+|++++|+|+.
T Consensus        82 ~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                  11223467899999999974

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.69  E-value=1.6e-08  Score=74.97  Aligned_cols=63  Identities=17%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             ccccccccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL  147 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~  147 (159)
                      +++..+.+.++.++|.+++|||+.++. +|..+.  +|+..+..  .++|++||+||+||.+.+.+..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~--r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~   87 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD--RFLVVAEA--QNIEPIIVLNKIDLLDDEDMEK   87 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHH--HHHHHHHH--CCCCEEEEEECcccCCCHHHHH
Confidence            566777788999999999999999887 888888  89876654  5799999999999977666553

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=8.2e-08  Score=75.23  Aligned_cols=119  Identities=18%  Similarity=0.156  Sum_probs=81.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh--cCCCCCC---------cccce---------e-eeeEEEEEECCeEEEEEEEeCC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYT--GNTFPTD---------YVPTV---------F-DNFSANVMVDGRTVNLGLWDTA   78 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~--~~~~~~~---------~~~t~---------~-~~~~~~~~~~~~~~~~~i~D~~   78 (159)
                      .+...++||-+|.+|||||-.+|+  ++.+...         ...+.         + ...+..++++...+.+++.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            455678999999999999998886  3333210         00000         1 1123344566666789999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      |++.|..-.-.-+..+|.+|+|+|+...-.-+.+   .+++-.+  ..++||+-+.||.|.+...
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~---KLfeVcr--lR~iPI~TFiNKlDR~~rd  149 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL---KLFEVCR--LRDIPIFTFINKLDREGRD  149 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccCccHHHH---HHHHHHh--hcCCceEEEeeccccccCC
Confidence            9999988777778899999999998854332322   3333222  1489999999999986433

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.68  E-value=4.1e-09  Score=77.77  Aligned_cols=68  Identities=19%  Similarity=0.162  Sum_probs=35.2

Q ss_pred             EEEEEeCCCcccccccccc------ccc--CCcEEEEEEeCC---ChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           71 NLGLWDTAGQEDYNRLRPL------SYR--GADVFILAFSLI---SRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        71 ~~~i~D~~g~~~~~~~~~~------~~~--~~~~~i~v~d~~---~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      .+.++|||||.++...+..      .+.  ..-+++++.|..   ++..|-...   ++.......-+.|.+.|.||+|+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~---L~s~s~~~~~~lP~vnvlsK~Dl  168 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSL---LLSLSIMLRLELPHVNVLSKIDL  168 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHH---HHHHHHHHHHTSEEEEEE--GGG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHH---HHHHHHHhhCCCCEEEeeeccCc
Confidence            6889999999766544322      222  344677888865   444443332   22211111237999999999999


Q ss_pred             cc
Q 044772          140 RK  141 (159)
Q Consensus       140 ~~  141 (159)
                      ..
T Consensus       169 ~~  170 (238)
T PF03029_consen  169 LS  170 (238)
T ss_dssp             S-
T ss_pred             cc
Confidence            76

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01900 YchF YchF subfamily

Probab=98.68  E-value=3.1e-08  Score=74.43  Aligned_cols=79  Identities=19%  Similarity=0.069  Sum_probs=49.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-CCcccce-eeeeEEEEEECCe---------------EEEEEEEeCCCccccc---
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV-FDNFSANVMVDGR---------------TVNLGLWDTAGQEDYN---   84 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~---   84 (159)
                      |.+||.|+||||||+++|.+.+.. .+|..++ .... ..+.+.+.               ...+.++|+||-..-.   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~-g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV-GIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee-eeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            478999999999999999987753 2333333 2222 22223222               2358999999943211   


Q ss_pred             -c---cccccccCCcEEEEEEeCC
Q 044772           85 -R---LRPLSYRGADVFILAFSLI  104 (159)
Q Consensus        85 -~---~~~~~~~~~~~~i~v~d~~  104 (159)
                       .   ..-..++++|+++.|+|+.
T Consensus        80 ~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          80 EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hHHHHHHHHHHHhCCEEEEEEeCc
Confidence             1   1122357899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01858 NGP_1 NGP-1

Probab=98.65  E-value=1.1e-07  Score=65.74  Aligned_cols=55  Identities=16%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG   79 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g   79 (159)
                      ...+++++|.+|+|||||+|+|.+.+.... .+..+.+. ...+..+.   .+.+.|+||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            457899999999999999999997664321 11112211 11222222   267999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=4.3e-07  Score=70.12  Aligned_cols=118  Identities=17%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------cccceeeee-EEEEEECCeEEEEEEEeCCCcccccc--
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD---------YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR--   85 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--   85 (159)
                      .....+.++++|++|.|||||+|.|+...+..+         ...+..... ...+.-++..+.+.+.||||...+..  
T Consensus        17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns   96 (366)
T KOG2655|consen   17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS   96 (366)
T ss_pred             hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence            445678999999999999999999998765533         111112211 22333456788899999998432211  


Q ss_pred             -----------------------ccccccc--CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           86 -----------------------LRPLSYR--GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        86 -----------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                                             ..+..+.  +.|++++...... ..+..++. ..+..+..   .+.+|-|.-|.|..
T Consensus        97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di-~~Mk~l~~---~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen   97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDI-EFMKKLSK---KVNLIPVIAKADTL  171 (366)
T ss_pred             ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhH-HHHHHHhc---cccccceeeccccC
Confidence                                   1122233  5677777777553 23444443 55555554   66777777899964

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.62  E-value=1.4e-07  Score=66.29  Aligned_cols=55  Identities=24%  Similarity=0.115  Sum_probs=36.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG   79 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g   79 (159)
                      ..++++++|.+|+|||||+|+|.+...... .+..+.+. ...+..+.   .+.++|+||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            347999999999999999999997664211 11112222 22333332   378999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01859 MJ1464 MJ1464

Probab=98.62  E-value=1.5e-07  Score=64.88  Aligned_cols=55  Identities=24%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEE-EEECCeEEEEEEEeCCC
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAG   79 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~g   79 (159)
                      ...+++++|.+++|||||++++.++.. ..+.++.+.+.... ...+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            457899999999999999999996553 23344444433322 22222   489999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.59  E-value=1.8e-07  Score=65.61  Aligned_cols=57  Identities=19%  Similarity=0.130  Sum_probs=38.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      ...++++++|.+|+|||||++++.+..+... .+..+.+. ...+.++   ..+.++||||-
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3457999999999999999999998775321 22222222 2233333   34789999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.57  E-value=2e-08  Score=80.39  Aligned_cols=124  Identities=24%  Similarity=0.347  Sum_probs=92.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+|+-|||..++|||+|+++++.+.+.+... +.+..|++++..++....+-+.|-+|..     -..|....|++|||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence            46799999999999999999999999876633 4455677777888888888899987732     22455679999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |.+.+..+|..+.  .+...+..+.  ..+|+++++++.=....+.-...+++.
T Consensus       103 f~~~d~~s~q~v~--~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~  154 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQ--ALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRA  154 (749)
T ss_pred             EEeccccCHHHHH--HHHhhcccccccccchHHhhcCcchhhcccccccchHHH
Confidence            9999999999887  4444444332  478999999887665555444444443

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=2.6e-07  Score=76.52  Aligned_cols=119  Identities=22%  Similarity=0.272  Sum_probs=79.9

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc----eeeeeEEEEEE---------CCe-EE---EEEEEeCCC
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPT----VFDNFSANVMV---------DGR-TV---NLGLWDTAG   79 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~---------~~~-~~---~~~i~D~~g   79 (159)
                      ....+..-|||+|+-..|||-|+..+-+.+........    ++-+|.....+         ++. .+   -+.++||||
T Consensus       470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg  549 (1064)
T KOG1144|consen  470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG  549 (1064)
T ss_pred             chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence            34556667999999999999999999876654332222    12222111100         111 01   167899999


Q ss_pred             cccccccccccccCCcEEEEEEeCCCh---hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISR---PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ++.|.+.+...-..|+.+|+|+|+...   .+...+      ..++.  .+.|+||..||+|....+
T Consensus       550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi------~lLR~--rktpFivALNKiDRLYgw  608 (1064)
T KOG1144|consen  550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI------NLLRM--RKTPFIVALNKIDRLYGW  608 (1064)
T ss_pred             chhhhhhhhccccccceEEEEeehhccCCcchhHHH------HHHHh--cCCCeEEeehhhhhhccc
Confidence            999999999999999999999998753   333322      22222  479999999999976433

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.53  E-value=1.9e-07  Score=69.43  Aligned_cols=119  Identities=17%  Similarity=0.079  Sum_probs=69.8

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-ceeeeeE-EEEEECCeEEEEEEEeCCCc----------cc
Q 044772           15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP-TVFDNFS-ANVMVDGRTVNLGLWDTAGQ----------ED   82 (159)
Q Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~-~~~~~~~~~~~~~i~D~~g~----------~~   82 (159)
                      ...+..+..+++++|.++||||||++.+...+....... ..+.+-. ....++.   .+.+.|.||.          +.
T Consensus       129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d  205 (320)
T KOG2486|consen  129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPAD  205 (320)
T ss_pred             ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcch
Confidence            334567889999999999999999999987665422111 2222111 1222222   3678888882          22


Q ss_pred             ccccccccccCCc---EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           83 YNRLRPLSYRGAD---VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        83 ~~~~~~~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +..+...|+.+-+   -+++..|.+.  .++..+. ..++.+.+  .++|..+|.||||...
T Consensus       206 ~~~~t~~Y~leR~nLv~~FLLvd~sv--~i~~~D~-~~i~~~ge--~~VP~t~vfTK~DK~k  262 (320)
T KOG2486|consen  206 WDKFTKSYLLERENLVRVFLLVDASV--PIQPTDN-PEIAWLGE--NNVPMTSVFTKCDKQK  262 (320)
T ss_pred             HhHhHHHHHHhhhhhheeeeeeeccC--CCCCCCh-HHHHHHhh--cCCCeEEeeehhhhhh
Confidence            3344455554332   3445555553  3444443 22333332  4699999999999753

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.52  E-value=2.4e-06  Score=62.96  Aligned_cols=94  Identities=18%  Similarity=0.198  Sum_probs=64.6

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----c---cccc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY----N---RLRP   88 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~   88 (159)
                      ..++...+++++|-|.||||||+..+..... ...|..|.-......+.+++..  +++.|+||.-.-    .   +...
T Consensus        57 V~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQvi  134 (364)
T KOG1486|consen   57 VLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVI  134 (364)
T ss_pred             eeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEE
Confidence            3566778999999999999999999885442 2345555544445556667654  899999984211    1   1223


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhh
Q 044772           89 LSYRGADVFILAFSLISRPSYENI  112 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~  112 (159)
                      ..-+.+|.+++|.|.+..+.-..+
T Consensus       135 avArtaDlilMvLDatk~e~qr~~  158 (364)
T KOG1486|consen  135 AVARTADLILMVLDATKSEDQREI  158 (364)
T ss_pred             EEeecccEEEEEecCCcchhHHHH
Confidence            445779999999999876654433

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.52  E-value=4e-07  Score=68.67  Aligned_cols=56  Identities=21%  Similarity=0.181  Sum_probs=37.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      ..++++++|.+|||||||+|+|.+.+.... ....+.+. ...+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            468999999999999999999997664322 11112111 22333332   3789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.50  E-value=7.8e-07  Score=65.03  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=71.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccc--------ceeeee-EEEEEECCeEEEEEEEeCCCcccc---c
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVP--------TVFDNF-SANVMVDGRTVNLGLWDTAGQEDY---N   84 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~--------t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~---~   84 (159)
                      .....++|+|||.+|.|||||+|.++......+ ..+        |.+-.. ...+.-++...++.+.||||...+   .
T Consensus        42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~  121 (336)
T KOG1547|consen   42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND  121 (336)
T ss_pred             hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence            344778999999999999999999986655432 111        222211 223334667888999999995432   2


Q ss_pred             ccccc-----------------------cccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           85 RLRPL-----------------------SYRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        85 ~~~~~-----------------------~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      .+|..                       .+.+  .+.+++....+. .++..++. .+++.+.+   -+.++-|.-|.|-
T Consensus       122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDi-eflkrLt~---vvNvvPVIakaDt  196 (336)
T KOG1547|consen  122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDI-EFLKRLTE---VVNVVPVIAKADT  196 (336)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccH-HHHHHHhh---hheeeeeEeeccc
Confidence            23321                       2233  556666666554 34554543 56666554   3456666778884

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2.8e-06  Score=68.72  Aligned_cols=129  Identities=15%  Similarity=0.121  Sum_probs=80.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCC--C------------------CCCcccce---------eeee-EEEEEECC
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNT--F------------------PTDYVPTV---------FDNF-SANVMVDG   67 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~------------------~~~~~~t~---------~~~~-~~~~~~~~   67 (159)
                      .+...+.++++|.-.+|||||+-+++..-  .                  .-.|....         +... ....+++.
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            44477899999999999999998776331  1                  11111111         1111 22334455


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHh-hhh---hhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYEN-ISK---KKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~---~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ....+.+.|.||+-.|-.....-...+|.+|+|+|++-.. |+. ...   -+=...+.+...-..++|+.||+|+.++.
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws  331 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS  331 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence            5667999999998888776666677899999999998543 321 111   01111222222245689999999998766


Q ss_pred             cccc
Q 044772          144 QFHL  147 (159)
Q Consensus       144 ~v~~  147 (159)
                      +-..
T Consensus       332 q~RF  335 (603)
T KOG0458|consen  332 QDRF  335 (603)
T ss_pred             HHHH
Confidence            5443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.48  E-value=6.9e-07  Score=67.76  Aligned_cols=56  Identities=20%  Similarity=0.201  Sum_probs=37.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      ..++++++|.+|||||||+|+|.+.+.... .+..+.+. ...+..+.   .+.++||||-
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            468999999999999999999998764321 11222222 12233332   3789999996

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.38  E-value=1.4e-06  Score=60.02  Aligned_cols=55  Identities=24%  Similarity=0.231  Sum_probs=35.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcc-cceeeeeEEEEEECCeEEEEEEEeCCC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYV-PTVFDNFSANVMVDGRTVNLGLWDTAG   79 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g   79 (159)
                      ....+++++|.+|+|||||+|.+.+.... .... .+...  ......+   ..+.+.||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence            35678999999999999999999976532 1111 11111  1222222   2378999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.37  E-value=4e-07  Score=63.10  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ..++++|++|||||||+|.|.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            578999999999999999999774

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.37  E-value=4.6e-06  Score=64.09  Aligned_cols=123  Identities=18%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--C----------Ccccceeee-------------eEE--EE-----EECC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--T----------DYVPTVFDN-------------FSA--NV-----MVDG   67 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~----------~~~~t~~~~-------------~~~--~~-----~~~~   67 (159)
                      ...++++.+|.-.-||||||-||+.+.-.  +          ....+.+..             ..+  ++     .+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            45689999999999999999999866421  0          001111100             000  01     1122


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      .+-+|.+-||||+++|....-.--..|+.+|+++|.-.. -......+.++..+..   =..++|..||+||.+..+-.
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLG---IrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLG---IRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhC---CcEEEEEEeeecccccCHHH
Confidence            334588999999999987766667789999999998532 1222222233333332   23589999999998766544

>cd01855 YqeH YqeH

Probab=98.37  E-value=6.4e-07  Score=63.74  Aligned_cols=25  Identities=20%  Similarity=0.110  Sum_probs=22.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ..+++++|.+|+|||||+|.|.+..
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999999754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.33  E-value=1.5e-06  Score=66.98  Aligned_cols=55  Identities=24%  Similarity=0.231  Sum_probs=38.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      +..++.+||-|+||||||||+|.+.+... ...|  +.+. ...+..+..   +.++||||-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence            45789999999999999999999877532 2222  3222 223333433   789999994

>PRK12288 GTPase RsgA; Reviewed

Probab=98.31  E-value=8.5e-07  Score=68.91  Aligned_cols=24  Identities=21%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      -++|+|.+|||||||+|+|++...
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~  230 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAE  230 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccc
Confidence            378999999999999999997653

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.18  E-value=7e-06  Score=62.67  Aligned_cols=25  Identities=16%  Similarity=0.064  Sum_probs=20.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .....|.|+|++|+|||||+..+..
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3456788999999999999998764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.18  E-value=1.4e-06  Score=64.42  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=50.6

Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh-------HHhhhh-hhHHHHHhhhC--CCCCEEEEeeC
Q 044772           67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS-------YENISK-KKWVPELRHYA--PSVPIVLVGTK  136 (159)
Q Consensus        67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~-~~~~~~i~~~~--~~~piilv~nK  136 (159)
                      -..++++.+|.+|+-.-+..|..++.+.-++|||..+++-..       -+.+.+ ..+++.+-...  ..+.+||..||
T Consensus       199 Vdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNK  278 (379)
T KOG0099|consen  199 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNK  278 (379)
T ss_pred             ccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecH
Confidence            345679999999999999999999999999999988764221       111110 02222221111  25789999999


Q ss_pred             cccc
Q 044772          137 LDLR  140 (159)
Q Consensus       137 ~Dl~  140 (159)
                      .|+.
T Consensus       279 qDll  282 (379)
T KOG0099|consen  279 QDLL  282 (379)
T ss_pred             HHHH
Confidence            9985

>TIGR00092 GTP-binding protein YchF

Probab=98.18  E-value=6.6e-06  Score=64.16  Aligned_cols=81  Identities=17%  Similarity=0.034  Sum_probs=53.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC-C-CCcccc-eeeeeEEEEEECCe---------------EEEEEEEeCCCccc--
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTF-P-TDYVPT-VFDNFSANVMVDGR---------------TVNLGLWDTAGQED--   82 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~-~-~~~~~t-~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--   82 (159)
                      .++-+||.|++|||||++.|.+... . .+|..+ .+... ..+.+.+.               ...+.+.|++|--.  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~-g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNA-GVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCce-eEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            6899999999999999999997765 3 334433 33322 22333321               23578999998432  


Q ss_pred             -----ccccccccccCCcEEEEEEeCC
Q 044772           83 -----YNRLRPLSYRGADVFILAFSLI  104 (159)
Q Consensus        83 -----~~~~~~~~~~~~~~~i~v~d~~  104 (159)
                           .....-..++++|+++.|+++.
T Consensus        82 s~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 1223334578899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=3.9e-06  Score=61.82  Aligned_cols=124  Identities=15%  Similarity=0.269  Sum_probs=73.1

Q ss_pred             EEEEEcCCCC--CHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEE--EEEEeCC-CcccccccccccccCCcEEE
Q 044772           24 KCVTVRDGAV--GKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVN--LGLWDTA-GQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        24 ki~vvG~~~~--GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~i~D~~-g~~~~~~~~~~~~~~~~~~i   98 (159)
                      -++|+|-+||  ||.+|+++|....|...........+. .-+++++.|.  +++.-.+ ..+.|... ...-.-..++|
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h-gwtid~kyysadi~lcishicde~~lpn-~~~a~pl~a~v   83 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH-GWTIDNKYYSADINLCISHICDEKFLPN-AEIAEPLQAFV   83 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeee-ceEecceeeecceeEEeecccchhccCC-cccccceeeEE
Confidence            4688999998  999999999988876543333222221 1123333221  1111111 01222221 11122356889


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++||.+....+..++  .|+....-..-++ ++++|||.|...+...+-+..++
T Consensus        84 mvfdlse~s~l~alq--dwl~htdinsfdi-llcignkvdrvphhlahdeyrrr  134 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQ--DWLPHTDINSFDI-LLCIGNKVDRVPHHLAHDEYRRR  134 (418)
T ss_pred             EEEeccchhhhHHHH--hhccccccccchh-heecccccccccchhhhhHHHHH
Confidence            999999999999888  9988543222222 57889999987766655554443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.16  E-value=4.3e-06  Score=74.18  Aligned_cols=112  Identities=23%  Similarity=0.209  Sum_probs=63.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCc----ccc--eeeeeEEEEEECCeEEEEEEEeCCCcccc--------ccccccc
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFPTDY----VPT--VFDNFSANVMVDGRTVNLGLWDTAGQEDY--------NRLRPLS   90 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~   90 (159)
                      .+|||++|+||||++.+- +-.+.-..    ..+  .+.+.....++.+   +..++|++|....        ...|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            799999999999999876 44443211    011  1111111112222   2569999983211        1234444


Q ss_pred             c---------cCCcEEEEEEeCCChhh-----HHhhhh--hhHHHHHhhhC-CCCCEEEEeeCcccc
Q 044772           91 Y---------RGADVFILAFSLISRPS-----YENISK--KKWVPELRHYA-PSVPIVLVGTKLDLR  140 (159)
Q Consensus        91 ~---------~~~~~~i~v~d~~~~~s-----~~~~~~--~~~~~~i~~~~-~~~piilv~nK~Dl~  140 (159)
                      +         .-.+++|+++|+.+.-.     ......  -..+.++.... -.+|+.|+.||+|+.
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            3         24899999999764321     111110  03344444443 489999999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.12  E-value=3.4e-06  Score=65.67  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++|+|++|||||||+|.|++..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc
Confidence            47999999999999999999765

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.10  E-value=6.3e-06  Score=63.61  Aligned_cols=61  Identities=18%  Similarity=0.097  Sum_probs=37.5

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .+.+.|.||+|..+-...   ....+|.++++.+....+....+.. ..++        ..-++|.||+|+..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~-gi~E--------~aDIiVVNKaDl~~  208 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK-GIME--------LADLIVINKADGDN  208 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh-hhhh--------hhheEEeehhcccc
Confidence            367889999986432222   3556999999876444444443321 1111        23489999999864

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=1.7e-05  Score=61.41  Aligned_cols=123  Identities=20%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---ccceeeeeEEEEEE------CCeE-------------------
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY---VPTVFDNFSANVMV------DGRT-------------------   69 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~------~~~~-------------------   69 (159)
                      .-....=|+++|+-..|||||++.|+.+.+....   .||.. .+...++.      ++..                   
T Consensus        54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd-~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af  132 (532)
T KOG1954|consen   54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD-RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF  132 (532)
T ss_pred             ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc-eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence            3344456999999999999999999999987542   22221 11111111      1100                   


Q ss_pred             --------------EEEEEEeCCCcc-----------cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh
Q 044772           70 --------------VNLGLWDTAGQE-----------DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY  124 (159)
Q Consensus        70 --------------~~~~i~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~  124 (159)
                                    -.+.+.|+||.-           .|...+.=+...+|.|+++||....+--.+.+  ..+..++.+
T Consensus       133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~--~vi~aLkG~  210 (532)
T KOG1954|consen  133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK--RVIDALKGH  210 (532)
T ss_pred             HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH--HHHHHhhCC
Confidence                          126689999831           12233344567899999999976544333333  445555443


Q ss_pred             CCCCCEEEEeeCcccccCccc
Q 044772          125 APSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus       125 ~~~~piilv~nK~Dl~~~r~v  145 (159)
                        .-.+=||.||.|..+..|.
T Consensus       211 --EdkiRVVLNKADqVdtqqL  229 (532)
T KOG1954|consen  211 --EDKIRVVLNKADQVDTQQL  229 (532)
T ss_pred             --cceeEEEeccccccCHHHH
Confidence              3456778899998875553

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.08  E-value=4.9e-06  Score=63.15  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      ..++++|++|+|||||+|.|.+...
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~  186 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLD  186 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhh
Confidence            5799999999999999999997653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.07  E-value=4.6e-06  Score=61.91  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ..++++|++|||||||+|+|.+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh
Confidence            468999999999999999999764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.04  E-value=1e-05  Score=61.16  Aligned_cols=22  Identities=23%  Similarity=0.296  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -.+++|++|||||||+|+|...
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCch
Confidence            6789999999999999999864

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.02  E-value=1e-05  Score=63.36  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+++++|.+|||||||+|+|++..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~  178 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQN  178 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhc
Confidence            489999999999999999999753

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.01  E-value=3.3e-05  Score=59.90  Aligned_cols=83  Identities=23%  Similarity=0.141  Sum_probs=54.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccc-ceeeeeEE-EEE----------EC----CeEEEEEEEeCCCcc---
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVP-TVFDNFSA-NVM----------VD----GRTVNLGLWDTAGQE---   81 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~~~-~~~----------~~----~~~~~~~i~D~~g~~---   81 (159)
                      .+++-+||.|+||||||.|.+...... .+|.- |++.+... .+.          ..    -....+.++|++|--   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            368899999999999999999977643 44443 33433311 111          01    134668899998732   


Q ss_pred             ----cccccccccccCCcEEEEEEeCC
Q 044772           82 ----DYNRLRPLSYRGADVFILAFSLI  104 (159)
Q Consensus        82 ----~~~~~~~~~~~~~~~~i~v~d~~  104 (159)
                          -..+..-..++.+|+++-|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                12233345578899999998876

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.01  E-value=1.2e-06  Score=63.81  Aligned_cols=75  Identities=16%  Similarity=0.245  Sum_probs=50.5

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHhhhhhhHHHHHhhhC--CCCCEEEEee
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SRPSYENISKKKWVPELRHYA--PSVPIVLVGT  135 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~i~~~~--~~~piilv~n  135 (159)
                      ..+.+.+.|.+|+-.-...|.+++.+.-.++|....+          +....++..  .++..|..+.  .+.++|+..|
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESk--ALFrTIi~yPWF~nssVIlFLN  274 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESK--ALFRTIITYPWFQNSSVILFLN  274 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH--HHHHHHhccccccCCceEEEec
Confidence            3455778888888777788888888876666654433          233333333  4555555553  5789999999


Q ss_pred             CcccccCcc
Q 044772          136 KLDLRKDRQ  144 (159)
Q Consensus       136 K~Dl~~~r~  144 (159)
                      |.|+.+++-
T Consensus       275 KkDlLEekI  283 (359)
T KOG0085|consen  275 KKDLLEEKI  283 (359)
T ss_pred             hhhhhhhhh
Confidence            999876554

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.01  E-value=2.7e-05  Score=57.01  Aligned_cols=84  Identities=20%  Similarity=0.147  Sum_probs=47.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCc--ccceeeeeEEEEEE-CCeEEEEEEEeCCCcccccc------cccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGN--TFPTDY--VPTVFDNFSANVMV-DGRTVNLGLWDTAGQEDYNR------LRPL   89 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~~~~   89 (159)
                      ...-|.|+|++++|||+|+|+|++.  .|....  .+++.-.......+ .+....+.++||+|......      ....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            3456889999999999999999988  554221  11111111111111 12345799999999654322      1122


Q ss_pred             cccC--CcEEEEEEeCC
Q 044772           90 SYRG--ADVFILAFSLI  104 (159)
Q Consensus        90 ~~~~--~~~~i~v~d~~  104 (159)
                      .+..  ++.+|+..+..
T Consensus        86 ~l~~llss~~i~n~~~~  102 (224)
T cd01851          86 ALATLLSSVLIYNSWET  102 (224)
T ss_pred             HHHHHHhCEEEEeccCc
Confidence            2223  66666655544

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK00098 GTPase RsgA; Reviewed

Probab=97.98  E-value=1e-05  Score=61.77  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ...++++|++|+|||||+|.|++..
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCc
Confidence            3468999999999999999998755

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=9e-05  Score=57.11  Aligned_cols=113  Identities=20%  Similarity=0.178  Sum_probs=66.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC----CCCCcccc-----eeeeeEEEEEE-------CCeEEEEEEEeCCCccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNT----FPTDYVPT-----VFDNFSANVMV-------DGRTVNLGLWDTAGQEDYN   84 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~----~~~~~~~t-----~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~   84 (159)
                      ..+++-++|.-.+|||+|..+|..-.    |......+     ..-.++. +..       .++..++.+.|+||+...-
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~-~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFST-MTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeeccee-eecccccccCccccceeEEEeCCCcHHHH
Confidence            34899999999999999999986322    21111111     1111211 111       3455788999999987554


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      +.....-.-.|..++|+|+...-.-+.+.. ..+..+.    ....++|.||+|+
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEc-Liig~~~----c~klvvvinkid~  134 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAEC-LIIGELL----CKKLVVVINKIDV  134 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchh-hhhhhhh----ccceEEEEecccc
Confidence            433333334567789999875444444432 3333333    2456777777775

>PRK13796 GTPase YqeH; Provisional

Probab=97.87  E-value=1.9e-05  Score=61.90  Aligned_cols=25  Identities=20%  Similarity=0.080  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ..++.++|.+|||||||+|+|++..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~  184 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEI  184 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhc
Confidence            3479999999999999999998643

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.82  E-value=4.4e-05  Score=61.24  Aligned_cols=55  Identities=16%  Similarity=0.125  Sum_probs=40.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-eeeEEEEEECCeEEEEEEEeCCCc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      .+.|=+||-|||||||+||.|.+.+-.+-. .|.| +.+.+++.+...   +.++|+||-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~~---v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSPS---VCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCCC---ceecCCCCc
Confidence            688999999999999999999998865442 2333 333445555543   679999994

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=3.6e-05  Score=58.03  Aligned_cols=121  Identities=19%  Similarity=0.125  Sum_probs=71.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC---CCC---CCcccce--------e-eeeEEEEEECCeEEEEEEEeCCCccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN---TFP---TDYVPTV--------F-DNFSANVMVDGRTVNLGLWDTAGQEDYN   84 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~---~~~---~~~~~t~--------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~   84 (159)
                      ...++|-.||.-.=|||||...+..-   ++.   ..|..-.        + .....++.+....-.+...|+||+..|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            35689999999999999998766421   110   1111100        0 1111222332222236688999998776


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCC-CEEEEeeCcccccCccc
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSV-PIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl~~~r~v  145 (159)
                      .....--.+.|+.|+|++.++-.--+.... -++...   . .+ .++++.||+|+.+++..
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEH-iLlarq---v-Gvp~ivvflnK~Dmvdd~el  146 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREH-ILLARQ---V-GVPYIVVFLNKVDMVDDEEL  146 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhh-hhhhhh---c-CCcEEEEEEecccccCcHHH
Confidence            544444457899999999987544443331 222211   1 34 47889999999875543

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00015  Score=59.97  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=70.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccceeeee---------------------------------------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPTVFDNF---------------------------------------   59 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~---------------------------------------   59 (159)
                      ...-||++.|..+.||||++|.++..+..+. -.+++....                                       
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4567999999999999999999998876432 111111000                                       


Q ss_pred             ----EEEEEECCe-----EEEEEEEeCCCcc---cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCC
Q 044772           60 ----SANVMVDGR-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS  127 (159)
Q Consensus        60 ----~~~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~  127 (159)
                          --.+..+..     .-.+.+.|.||-.   ....-...++.++|++|+|.+..+.-+..  .. .++....+-  +
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s--ek-~Ff~~vs~~--K  261 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS--EK-QFFHKVSEE--K  261 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH--HH-HHHHHhhcc--C
Confidence                000111111     0135567777743   23334466778899999999887644333  32 565555442  5


Q ss_pred             CCEEEEeeCcccccC
Q 044772          128 VPIVLVGTKLDLRKD  142 (159)
Q Consensus       128 ~piilv~nK~Dl~~~  142 (159)
                      +.|.|+-||.|....
T Consensus       262 pniFIlnnkwDasas  276 (749)
T KOG0448|consen  262 PNIFILNNKWDASAS  276 (749)
T ss_pred             CcEEEEechhhhhcc
Confidence            557778888897544

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.80  E-value=6.3e-05  Score=42.83  Aligned_cols=45  Identities=20%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD  138 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~D  138 (159)
                      .++++|++|.+..-.+.-.+-..++.+++....+.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            568999999986655422221278889998888999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=8.6e-05  Score=62.07  Aligned_cols=115  Identities=16%  Similarity=0.205  Sum_probs=76.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccce------eeeeE-------EEEEECCeEEEEEEEeCCCccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYVPTV------FDNFS-------ANVMVDGRTVNLGLWDTAGQED   82 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~------~~~~~-------~~~~~~~~~~~~~i~D~~g~~~   82 (159)
                      ......+++++.+-.=|||||...|+...  +.+...++.      +++-.       ..+..-...+.+++.|.||+-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            34567789999999999999999887433  222211111      11111       1112223557799999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHhhhh--hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLISRPSYENISK--KKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~--~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      |.+.......-+|++++.+|+...-.-+....  .-|.+       +...++|.||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehhhh
Confidence            99998888888999999999875432222210  13444       5778999999993

>cd01855 YqeH YqeH

Probab=97.78  E-value=2.4e-05  Score=55.60  Aligned_cols=52  Identities=23%  Similarity=0.407  Sum_probs=38.7

Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |...+..++++++++++|+|+.++..       .|...+.....+.|+++|+||+|+..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-------~~~~~l~~~~~~~~~ilV~NK~Dl~~   75 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-------SLIPRLRLFGGNNPVILVGNKIDLLP   75 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-------ccchhHHHhcCCCcEEEEEEchhcCC
Confidence            57778889999999999999987542       23333322234689999999999864

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.77  E-value=0.00015  Score=58.99  Aligned_cols=72  Identities=18%  Similarity=0.151  Sum_probs=46.0

Q ss_pred             EEEEEEeCCCcc-------------cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeC
Q 044772           70 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK  136 (159)
Q Consensus        70 ~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK  136 (159)
                      -.+++.|+||.-             ....+.++|+.+.+++|+|+.-.+-+....... ++...+..  .+..-|+|.+|
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVT-DLVsq~DP--~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVT-DLVSQMDP--HGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHH-HHHHhcCC--CCCeeEEEEee
Confidence            457889999831             223456788999999999986443333322222 33333332  25667999999


Q ss_pred             cccccCcc
Q 044772          137 LDLRKDRQ  144 (159)
Q Consensus       137 ~Dl~~~r~  144 (159)
                      .|+.+...
T Consensus       489 VDlAEknl  496 (980)
T KOG0447|consen  489 VDLAEKNV  496 (980)
T ss_pred             cchhhhcc
Confidence            99987643

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.76  E-value=0.00014  Score=50.44  Aligned_cols=21  Identities=29%  Similarity=0.112  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      ++++|..|+|||||+++++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            678999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13695 putative NTPase; Provisional

Probab=97.73  E-value=9.2e-05  Score=51.94  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|++++|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998653

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=8.4e-06  Score=64.06  Aligned_cols=122  Identities=19%  Similarity=0.110  Sum_probs=87.3

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC--C--cccce----------eeee-EEEEEECCeEEEEEEEe
Q 044772           14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGN--TFPT--D--YVPTV----------FDNF-SANVMVDGRTVNLGLWD   76 (159)
Q Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~--~--~~~t~----------~~~~-~~~~~~~~~~~~~~i~D   76 (159)
                      ...+...+..+|-++..-.+|||+.-.|++.-  ....  .  ...|.          +.+. +.-+.+++...++++.|
T Consensus        29 ~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlid  108 (753)
T KOG0464|consen   29 IINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLID  108 (753)
T ss_pred             CCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeec
Confidence            33455667778999999999999999988632  1110  0  00010          1111 23455677888899999


Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        77 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      +||+-.|.-....+++-.|+++.|||.+....-+.+.  .|-+.-+   -++|-+++.||+|..
T Consensus       109 tpghvdf~leverclrvldgavav~dasagve~qtlt--vwrqadk---~~ip~~~finkmdk~  167 (753)
T KOG0464|consen  109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLT--VWRQADK---FKIPAHCFINKMDKL  167 (753)
T ss_pred             CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceee--eehhccc---cCCchhhhhhhhhhh
Confidence            9999999999999999999999999988665555555  6655432   378999999999964

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.72  E-value=4.1e-05  Score=51.92  Aligned_cols=52  Identities=15%  Similarity=0.211  Sum_probs=35.9

Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ..+.++|.+++|+|+.++.+........|+...   ..+.|+++|+||+|+..+.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~   58 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEE   58 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHH
Confidence            446789999999999887654422111444432   2468999999999996433

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.67  E-value=0.0002  Score=54.98  Aligned_cols=83  Identities=19%  Similarity=0.107  Sum_probs=52.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccc-ceeeeeEEEEEE---------------CCeEEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVP-TVFDNFSANVMV---------------DGRTVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~-t~~~~~~~~~~~---------------~~~~~~~~i~D~~g~~~   82 (159)
                      ...+++=+||.|+||||||+|.|........ +.- |++.+.. .+.+               ...+..++++|+.|--.
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a-~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEA-RVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccc-eeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            4567999999999999999999997765433 222 3443332 1222               12456799999987322


Q ss_pred             -------ccccccccccCCcEEEEEEeC
Q 044772           83 -------YNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        83 -------~~~~~~~~~~~~~~~i~v~d~  103 (159)
                             ..+..-..++.+|+++=|+++
T Consensus        97 GAs~G~GLGN~FLs~iR~vDaifhVVr~  124 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRHVDAIFHVVRA  124 (391)
T ss_pred             CcccCcCchHHHHHhhhhccceeEEEEe
Confidence                   122233445678888777664

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.67  E-value=0.00012  Score=57.52  Aligned_cols=26  Identities=23%  Similarity=0.107  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      .-.|++|||.||||||-+.+|.....
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~  228 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYV  228 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56799999999999999988765443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.00026  Score=53.12  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=71.0

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-----EEEEEECCeEEEEEEEeCCCccc-------cc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-----SANVMVDGRTVNLGLWDTAGQED-------YN   84 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~~~i~D~~g~~~-------~~   84 (159)
                      ......++|+-||..|.|||||+..|++.+|.....+-.....     .+.+.-.+...++.+.|+.|...       +.
T Consensus        37 v~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk  116 (406)
T KOG3859|consen   37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYK  116 (406)
T ss_pred             HhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccc
Confidence            3456889999999999999999999999998655332222111     12223356678899999988321       11


Q ss_pred             c-------cccc-------------cccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           85 R-------LRPL-------------SYRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        85 ~-------~~~~-------------~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      .       ....             .+.+  .++.++.+..+. .++..++. ..+..+.   .++.||-|+-|.|..
T Consensus       117 ~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDL-vtmk~Ld---skVNIIPvIAKaDti  189 (406)
T KOG3859|consen  117 PIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDL-VTMKKLD---SKVNIIPVIAKADTI  189 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHH-HHHHHHh---hhhhhHHHHHHhhhh
Confidence            1       0111             1233  445555555553 35666554 3444443   355666666677754

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.64  E-value=0.00073  Score=46.82  Aligned_cols=56  Identities=20%  Similarity=0.194  Sum_probs=37.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCC
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTA   78 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~   78 (159)
                      ...||.+-|+||||||||+.++...--...  -+.+-.+..++.-++...-|.+.|+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            457999999999999999998863221111  11222334455566777777888876

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.61  E-value=2.4e-05  Score=61.28  Aligned_cols=55  Identities=22%  Similarity=0.439  Sum_probs=43.5

Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .+.|..+...+++.++.+++|+|+.+...       .|.+.+.+...+.|+++|+||+|+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-------s~~~~l~~~~~~~piilV~NK~DLl~  104 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-------SLIPELKRFVGGNPVLLVGNKIDLLP  104 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-------CccHHHHHHhCCCCEEEEEEchhhCC
Confidence            45677788888889999999999865442       66666666656789999999999854

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.58  E-value=6.8e-05  Score=49.13  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999753

...

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=97.56  E-value=0.00011  Score=56.14  Aligned_cols=116  Identities=18%  Similarity=0.145  Sum_probs=69.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--cccceeeeeEEEEEECCeEEEEEEEeCCCcc-cccc-c------ccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTD--YVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-DYNR-L------RPLSY   91 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~-~------~~~~~   91 (159)
                      ..-|.+||-.|+|||||+++|.+....++  ...|...+.. ..... ....+.+-||-|.- +..- .      .-.-.
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h-~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF~ATLeeV  255 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH-SAHLP-SGNFVLLTDTVGFISDLPIQLVAAFQATLEEV  255 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh-hccCC-CCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence            34589999999999999999996555433  2333333221 11122 12236677887741 1111 1      12234


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCC----CEEEEeeCccccc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSV----PIVLVGTKLDLRK  141 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~----piilv~nK~Dl~~  141 (159)
                      ..+|.++=|.|+++|.-.....  ..+..+.... +..    .++=|-||+|...
T Consensus       256 aeadlllHvvDiShP~ae~q~e--~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~  308 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRE--TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE  308 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHH--HHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence            6799999999999997665554  5555555443 222    3466778888754

>PRK08118 topology modulation protein; Reviewed

Probab=97.55  E-value=7.4e-05  Score=52.26  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .||+|+|++|||||||..+|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988744

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.53  E-value=0.00043  Score=55.28  Aligned_cols=23  Identities=22%  Similarity=0.008  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .+.-|+++|++||||||++.+|.
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35679999999999999998885

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.0004  Score=56.87  Aligned_cols=111  Identities=19%  Similarity=0.168  Sum_probs=63.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEE-EECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV-MVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      +.++-++|+|+||.|||||+..|...-...    |+... ...+ -..+..-.+.++++|.  ....++ ..-+-+|.++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i-~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEI-RGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhcc-CCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeE
Confidence            455678899999999999998887432111    11111 1111 1345555688999883  333332 2234588899


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.+|.+=.-.....   .++.-+.. ..-+.++-|.++.|+...
T Consensus       139 LlIdgnfGfEMETm---EFLnil~~-HGmPrvlgV~ThlDlfk~  178 (1077)
T COG5192         139 LLIDGNFGFEMETM---EFLNILIS-HGMPRVLGVVTHLDLFKN  178 (1077)
T ss_pred             EEeccccCceehHH---HHHHHHhh-cCCCceEEEEeecccccC
Confidence            99997732111111   33333332 223447889999998653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.52  E-value=0.00015  Score=55.09  Aligned_cols=51  Identities=20%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             cccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           88 PLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +..+.++|.+++|+|+.++. ++..+.  +|+..+..  .++|+++|+||+||...
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ld--r~L~~~~~--~~ip~iIVlNK~DL~~~  124 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLD--RYLVAAEA--AGIEPVIVLTKADLLDD  124 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHH--HHHHHHHH--cCCCEEEEEEHHHCCCh
Confidence            34478999999999999887 777777  78776654  36899999999999654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.50  E-value=0.00018  Score=56.16  Aligned_cols=53  Identities=26%  Similarity=0.341  Sum_probs=39.7

Q ss_pred             cccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           86 LRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        86 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.+..+.++|.+++|+|+.++. .+..+.  .|+..+..  .++|++||+||+||...
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld--R~L~~a~~--~~ip~ILVlNK~DLv~~  135 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLS--RFLVKAES--TGLEIVLCLNKADLVSP  135 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHH--HHHHHHHH--CCCCEEEEEEchhcCCh
Confidence            3345688999999999998775 444455  77765532  47999999999999643

>PRK07261 topology modulation protein; Provisional

Probab=97.50  E-value=9.1e-05  Score=51.98  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|+|+|++|+|||||...|..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.49  E-value=9.2e-05  Score=49.87  Aligned_cols=20  Identities=15%  Similarity=0.130  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      |+++|++|||||||+..+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999873

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.48  E-value=0.0001  Score=52.08  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .||+|+|+||+||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999765

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.47  E-value=0.00051  Score=45.56  Aligned_cols=24  Identities=17%  Similarity=0.099  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .-+++.|++|+|||+|++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999999998654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.46  E-value=0.00023  Score=58.05  Aligned_cols=24  Identities=17%  Similarity=0.036  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..-.++|+|++|+||||++.+|..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999988764

>PRK00098 GTPase RsgA; Reviewed

Probab=97.45  E-value=0.00023  Score=54.29  Aligned_cols=49  Identities=16%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ..++|.+++|+|+.++..+..... .|+..+..  .++|+++|+||+|+.+.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~id-r~L~~~~~--~~ip~iIVlNK~DL~~~  126 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLD-RFLVLAEA--NGIKPIIVLNKIDLLDD  126 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEEhHHcCCC
Confidence            589999999999988866555433 77776653  47899999999999643

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00011  Score=53.24  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|||||||++++-+-+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            58999999999999999886544

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.41  E-value=0.00018  Score=41.82  Aligned_cols=20  Identities=20%  Similarity=0.212  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      -.+|.|++|+|||||+..+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48899999999999998775

>cd01858 NGP_1 NGP-1

Probab=97.41  E-value=0.00023  Score=49.05  Aligned_cols=51  Identities=18%  Similarity=0.111  Sum_probs=34.3

Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      .+.++|.+++|.|+.++..-...   .+...+.....+.|+++|.||+|+....
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~---~i~~~l~~~~~~~p~ilVlNKiDl~~~~   55 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCK---HVEEYLKKEKPHKHLIFVLNKCDLVPTW   55 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCH---HHHHHHHhccCCCCEEEEEEchhcCCHH
Confidence            46789999999999886432111   3333333333458999999999996443

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.00017  Score=53.19  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ++++|++|||||||++-+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999998876544

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.35  E-value=0.00026  Score=51.19  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +.+..-|+|+|++|+|||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            345567889999999999999999743

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.00027  Score=62.36  Aligned_cols=113  Identities=25%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCC----cccceeeeeEEEEEECCeEEEEEEEeCCCcccc--------ccccccc--
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFPTD----YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY--------NRLRPLS--   90 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~--   90 (159)
                      .+|||++|+||||++..- +..|.-.    .....+.. +..+. ..-.-+-.++||.|....        ...|..+  
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            689999999999997532 2333211    01111111 11111 011123678898884221        2234333  


Q ss_pred             -------ccCCcEEEEEEeCCChhhHHhhhhh----hH---HHHHhhhC-CCCCEEEEeeCcccc
Q 044772           91 -------YRGADVFILAFSLISRPSYENISKK----KW---VPELRHYA-PSVPIVLVGTKLDLR  140 (159)
Q Consensus        91 -------~~~~~~~i~v~d~~~~~s~~~~~~~----~~---~~~i~~~~-~~~piilv~nK~Dl~  140 (159)
                             .+-.++||+..|+.+.-+-......    .+   ++++.... -..|+.|++||.|+.
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll  269 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL  269 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence                   2458899999998643222111100    11   33444333 489999999999985

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.32  E-value=0.00018  Score=52.56  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++++|++|||||||++-+-+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            389999999999999997754

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.32  E-value=0.00041  Score=52.69  Aligned_cols=29  Identities=17%  Similarity=0.244  Sum_probs=23.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ...+...++++|++|.|||+++++|....
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence            33455679999999999999999998644

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.29  E-value=0.00069  Score=45.82  Aligned_cols=106  Identities=13%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh
Q 044772           27 TVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR  106 (159)
Q Consensus        27 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~  106 (159)
                      .-|.+|+|||++...+...-.... ..+.-...-  .......+.+.++|+++..  .......+..+|.++++.+.+ .
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D--~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLG-KRVLLLDAD--LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-P   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECC--CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-h
Confidence            346889999999765542211000 000000000  0001112678999998742  223346788899999998876 4


Q ss_pred             hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772          107 PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus       107 ~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      .++....  ..++.+.......++.+|.|+++-.
T Consensus        79 ~s~~~~~--~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 TSITDAY--ALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             hHHHHHH--HHHHHHHHhcCCCCEEEEEeCCCCH
Confidence            4555544  4455554444566788999999754

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.28  E-value=0.00025  Score=47.47  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999887543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.28  E-value=0.00018  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999755

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.26  E-value=0.0003  Score=46.21  Aligned_cols=26  Identities=23%  Similarity=0.133  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP   48 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~   48 (159)
                      -.++++|++|+|||+++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999865543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK06217 hypothetical protein; Validated

Probab=97.25  E-value=0.00027  Score=49.97  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+|+|+|.+|||||||..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988743

>cd01859 MJ1464 MJ1464

Probab=97.24  E-value=0.00021  Score=49.06  Aligned_cols=52  Identities=17%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .++++.++++|.+++|+|+.++......   .+...+..  .+.|+++|+||+|+..
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~---~l~~~~~~--~~~p~iiv~NK~Dl~~   55 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR---KLERYVLE--LGKKLLIVLNKADLVP   55 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH---HHHHHHHh--CCCcEEEEEEhHHhCC
Confidence            3456777889999999999876433221   22222211  3689999999999854

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.24  E-value=0.00032  Score=49.95  Aligned_cols=23  Identities=9%  Similarity=0.082  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .=|+|+|++|||||||+++|+..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34889999999999999999864

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.23  E-value=0.00031  Score=53.35  Aligned_cols=60  Identities=20%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce----eeee--EEEEEECCeEEEEEEEeCCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV----FDNF--SANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~--~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      ...++++|+|-||+|||||+|.+.............    +.+.  ...+.+..+. .+.+.|+||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            467899999999999999999887554322211111    1111  1123333333 2778999983

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.23  E-value=0.00029  Score=49.98  Aligned_cols=22  Identities=18%  Similarity=0.154  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.21  E-value=0.00036  Score=41.41  Aligned_cols=21  Identities=10%  Similarity=0.118  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |++.|++|+|||++.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999988753

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.21  E-value=0.00032  Score=47.42  Aligned_cols=21  Identities=29%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999854

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.20  E-value=0.00034  Score=46.19  Aligned_cols=21  Identities=19%  Similarity=0.099  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998754

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.19  E-value=0.00033  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.129  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988653

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00235 udk uridine kinase

Probab=97.18  E-value=0.00046  Score=49.77  Aligned_cols=26  Identities=19%  Similarity=-0.036  Sum_probs=21.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +....-|.|+|++|+|||||++.+.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            34456789999999999999998874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.16  E-value=0.00042  Score=48.54  Aligned_cols=52  Identities=21%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT   77 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~   77 (159)
                      +|++.|++|+|||||+++++..--... .+..+. +...+.-++.++-+.+.|+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~Gf-~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGGF-YTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEEE-EEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC-CccceE-EeecccCCCceEEEEEEEC
Confidence            689999999999999999874321111 111121 2223334555666666666

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.00042  Score=49.01  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .=+++.||+|+|||||+++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            447888999999999999998655

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.15  E-value=0.00038  Score=48.84  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -|+|+|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.15  E-value=0.00036  Score=52.00  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      =++++|++|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999998875

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.14  E-value=0.0014  Score=51.32  Aligned_cols=118  Identities=16%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------ccc-----ceeeee-EEEEEE----------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD------------------YVP-----TVFDNF-SANVMV----------   65 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~------------------~~~-----t~~~~~-~~~~~~----------   65 (159)
                      --.++++++|...+|||+|+--|..++....                  ...     ..+... .+.+.+          
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            3567999999999999999865554433210                  000     011100 001111          


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccC--CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           66 DGRTVNLGLWDTAGQEDYNRLRPLSYRG--ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        66 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.....+.+.|+.|+.+|..-..+.+..  .|.++++++.+..-....-   +.+..+..  -++|+.++.+|+|+.+.
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr---EHLgl~~A--L~iPfFvlvtK~Dl~~~  318 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR---EHLGLIAA--LNIPFFVLVTKMDLVDR  318 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH---HHHHHHHH--hCCCeEEEEEeeccccc
Confidence            1122347799999998876654444432  5667777777643222211   22222222  26999999999999765

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.13  E-value=0.002  Score=51.07  Aligned_cols=111  Identities=19%  Similarity=0.045  Sum_probs=69.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC----Ccccce-eeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFPT----DYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      |...|+---|||||+..+.+.....    ..+.+. .-.|.+   .+-....+.+.|.||++++-...-..+...|.+++
T Consensus         3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y---~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYY---RKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEe---ccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            5566788899999999988655321    112222 222221   12222368999999999988777777788999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |++.++.-..+.......+..+    .-...++|.||+|..+.
T Consensus        80 vV~~deGl~~qtgEhL~iLdll----gi~~giivltk~D~~d~  118 (447)
T COG3276          80 VVAADEGLMAQTGEHLLILDLL----GIKNGIIVLTKADRVDE  118 (447)
T ss_pred             EEeCccCcchhhHHHHHHHHhc----CCCceEEEEeccccccH
Confidence            9999643332222210112211    23457999999999853

>PRK14530 adenylate kinase; Provisional

Probab=97.12  E-value=0.00045  Score=50.14  Aligned_cols=21  Identities=10%  Similarity=0.053  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .+|+|+|+|||||||+.++|.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La   24 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLA   24 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999886

>PRK03839 putative kinase; Provisional

Probab=97.11  E-value=0.00045  Score=48.61  Aligned_cols=22  Identities=18%  Similarity=0.086  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +|+++|.+|+||||+..+|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888643

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.11  E-value=0.00046  Score=44.66  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      -.++++|++|+|||||+..+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            358999999999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.11  E-value=0.00041  Score=53.67  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ++++||+|||||||++.+.+=.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8899999999999999887644

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.11  E-value=0.00046  Score=50.98  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ...++++|+|++|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999888754

This is thought to be an ATPase involved in viral DNA packaging [].

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.10  E-value=0.00046  Score=45.35  Aligned_cols=21  Identities=14%  Similarity=-0.018  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988754

...

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.08  E-value=0.00055  Score=48.33  Aligned_cols=22  Identities=18%  Similarity=0.080  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.++++|++|+|||||++.+..
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999998763

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.08  E-value=0.0011  Score=48.05  Aligned_cols=20  Identities=20%  Similarity=0.267  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      =.+++||+|||||||+..|-
T Consensus        35 VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHH
Confidence            46899999999999998774

>TIGR00101 ureG urease accessory protein UreG

Probab=97.08  E-value=0.00055  Score=49.24  Aligned_cols=24  Identities=25%  Similarity=0.163  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +++|.++|++|+|||||++++.+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            368999999999999999988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.06  E-value=0.00065  Score=47.80  Aligned_cols=25  Identities=20%  Similarity=0.048  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +..-+.|+|.+|+|||||+.+++..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3446899999999999999999854

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.06  E-value=0.00052  Score=48.36  Aligned_cols=21  Identities=14%  Similarity=-0.054  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .-|+++|++||||||+++++.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999887

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.06  E-value=0.00058  Score=46.40  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .|+|+|+.|+|||||+..|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998754

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.06  E-value=0.00059  Score=45.84  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PLN02200 adenylate kinase family protein

Probab=97.04  E-value=0.00087  Score=49.44  Aligned_cols=26  Identities=8%  Similarity=-0.065  Sum_probs=21.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ......|+|+|+|||||||+..+|..
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            33456799999999999999988863

>PRK14531 adenylate kinase; Provisional

Probab=97.04  E-value=0.00063  Score=48.13  Aligned_cols=23  Identities=9%  Similarity=-0.010  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+|+++|+||+||||+..+|..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999988853

>PRK13949 shikimate kinase; Provisional

Probab=97.02  E-value=0.00064  Score=47.62  Aligned_cols=21  Identities=24%  Similarity=0.115  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|+|+|++|+||||+...|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987763

>PRK12288 GTPase RsgA; Reviewed

Probab=97.01  E-value=0.0015  Score=51.02  Aligned_cols=47  Identities=15%  Similarity=0.241  Sum_probs=38.5

Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..++|.+++|++.....++..+.  .|+..+..  .++|++||+||+||..
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ld--r~L~~a~~--~~i~~VIVlNK~DL~~  164 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIID--RYLVACET--LGIEPLIVLNKIDLLD  164 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHH--HHHHHHHh--cCCCEEEEEECccCCC
Confidence            35699999999998888888888  88775542  4689999999999965

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.01  E-value=0.0012  Score=54.32  Aligned_cols=117  Identities=19%  Similarity=0.100  Sum_probs=76.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----CCc--ccce----------eeee-EEEEEECCeEEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP----TDY--VPTV----------FDNF-SANVMVDGRTVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~----~~~--~~t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~   82 (159)
                      .+..+|=++-.-.+|||++-+|++.-.-.    ..-  ..+.          +.+- +.-....++.+.+++.||||+-.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            45567777778889999998887632211    110  0000          0000 11112233467899999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |.-.....++-.|++|++++....-.-+...  -|.+.-+.   ++|.+...||.|.-.
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~t--V~rQ~~ry---~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTET--VWRQMKRY---NVPRICFINKMDRMG  170 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHH--HHHHHHhc---CCCeEEEEehhhhcC
Confidence            9888888999999999999876543333333  56554333   689999999999754

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.01  E-value=0.0034  Score=46.85  Aligned_cols=92  Identities=20%  Similarity=0.202  Sum_probs=58.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cc------ccccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YN------RLRPLSY   91 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~------~~~~~~~   91 (159)
                      ....+|=++|=|.+||||++..+.+.... ..|..|.-.+......+.+  -++++.|+||.-. ..      .....-.
T Consensus        57 tg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviava  134 (358)
T KOG1487|consen   57 TGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVA  134 (358)
T ss_pred             ecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEe
Confidence            34458999999999999999999865432 2333333222222223333  4589999998421 11      1223345


Q ss_pred             cCCcEEEEEEeCCChhhHHhhh
Q 044772           92 RGADVFILAFSLISRPSYENIS  113 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~  113 (159)
                      +.|+.+++|.|+-.|-+-..+.
T Consensus       135 rtcnli~~vld~~kp~~hk~~i  156 (358)
T KOG1487|consen  135 RTCNLIFIVLDVLKPLSHKKII  156 (358)
T ss_pred             ecccEEEEEeeccCcccHHHHH
Confidence            6799999999998886655443

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.00  E-value=0.00062  Score=48.81  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .-|+|+|++|+|||||++.|.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999988754

>PRK14532 adenylate kinase; Provisional

Probab=96.99  E-value=0.00069  Score=47.98  Aligned_cols=21  Identities=14%  Similarity=0.045  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|+++|+|||||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.97  E-value=0.00075  Score=48.89  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            58999999999999999988653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.97  E-value=0.00074  Score=47.70  Aligned_cols=24  Identities=21%  Similarity=0.118  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -.++++|++|+|||||++.+.+-.
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            368999999999999999887643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.96  E-value=0.00077  Score=47.83  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      +++|+|++|+|||||+|-+.+=..
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccC
Confidence            689999999999999998765443

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.96  E-value=0.0056  Score=37.76  Aligned_cols=74  Identities=22%  Similarity=0.183  Sum_probs=44.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-ccccccCCcEEEEEEeC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL  103 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~  103 (159)
                      +++.|..|+|||++...+...-....         .+...++    .+.+.|+++....... .......++.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            57889999999999887763321111         1112223    5889998875433221 13455678888888886


Q ss_pred             CChhhHHhh
Q 044772          104 ISRPSYENI  112 (159)
Q Consensus       104 ~~~~s~~~~  112 (159)
                      ... +....
T Consensus        69 ~~~-~~~~~   76 (99)
T cd01983          69 EAL-AVLGA   76 (99)
T ss_pred             chh-hHHHH
Confidence            643 34433

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.94  E-value=0.00069  Score=47.98  Aligned_cols=22  Identities=9%  Similarity=0.046  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +|+|+|++|+||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988743

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.94  E-value=0.00071  Score=47.32  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=15.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ....++|.|++|+|||+|++++.
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~   45 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALL   45 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34678999999999999999775

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.94  E-value=0.00084  Score=48.61  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.94  E-value=0.00072  Score=52.61  Aligned_cols=22  Identities=27%  Similarity=0.290  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ++++||+||||||+++.+.+=.
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999998887544

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.93  E-value=0.0008  Score=47.33  Aligned_cols=20  Identities=10%  Similarity=0.032  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      |+++|+|||||||+..+|..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK01889 GTPase RsgA; Reviewed

Probab=96.93  E-value=0.001  Score=52.06  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+++++|.+|+|||||++.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            479999999999999999998654

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.93  E-value=0.00081  Score=47.73  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.92  E-value=0.00081  Score=48.48  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999888643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.92  E-value=0.00094  Score=49.12  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ..+|+|+|+|||||||+..+|...
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            367999999999999999988643

>PRK02496 adk adenylate kinase; Provisional

Probab=96.92  E-value=0.00093  Score=47.18  Aligned_cols=22  Identities=9%  Similarity=0.122  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+++|+|++|+||||+...|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.92  E-value=0.00091  Score=48.06  Aligned_cols=23  Identities=22%  Similarity=0.153  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999887643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.91  E-value=0.00091  Score=49.09  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=96.91  E-value=0.028  Score=44.94  Aligned_cols=114  Identities=17%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------Ccccceeeee----EEEEEE-CCeEEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPT---------------------DYVPTVFDNF----SANVMV-DGRTVNLGLW   75 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~----~~~~~~-~~~~~~~~i~   75 (159)
                      .+=|=||||-..|||||+.||...-..+                     ...-|.+..|    ...+.+ ++..+++.+.
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            3557899999999999999996433221                     1122234433    224444 4667889999


Q ss_pred             eCCCcc--------c--ccc----ccccc---c--------------cCCcEEEEEEeCC----ChhhHHhhhhhhHHHH
Q 044772           76 DTAGQE--------D--YNR----LRPLS---Y--------------RGADVFILAFSLI----SRPSYENISKKKWVPE  120 (159)
Q Consensus        76 D~~g~~--------~--~~~----~~~~~---~--------------~~~~~~i~v~d~~----~~~s~~~~~~~~~~~~  120 (159)
                      |+-|.-        .  -.+    -|-.+   |              ...-++|+.-|.+    .++.+..+.+ +.+.+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe-rvI~E  175 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEE-RVIEE  175 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHH-HHHHH
Confidence            987621        1  011    12111   1              1233566665533    2455555554 66666


Q ss_pred             HhhhCCCCCEEEEeeCcc
Q 044772          121 LRHYAPSVPIVLVGTKLD  138 (159)
Q Consensus       121 i~~~~~~~piilv~nK~D  138 (159)
                      ++..  +.|++++.|-.+
T Consensus       176 Lk~i--gKPFvillNs~~  191 (492)
T PF09547_consen  176 LKEI--GKPFVILLNSTK  191 (492)
T ss_pred             HHHh--CCCEEEEEeCCC
Confidence            6654  489999999776

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.91  E-value=0.00095  Score=47.38  Aligned_cols=24  Identities=21%  Similarity=0.090  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .-.++++|++|+|||||++.+++-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346999999999999999988754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.91  E-value=0.00096  Score=48.14  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=22.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .....|.++|..|+|||||+++++..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            35778999999999999999999754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.90  E-value=0.00086  Score=48.38  Aligned_cols=22  Identities=18%  Similarity=0.086  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.90  E-value=0.00087  Score=44.30  Aligned_cols=23  Identities=22%  Similarity=0.143  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+++.|++|+|||++++++....
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998643

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.90  E-value=0.00096  Score=48.15  Aligned_cols=22  Identities=23%  Similarity=0.154  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.00086  Score=49.22  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      |++||++|+|||||++.+-+
T Consensus        33 VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          33 VAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            89999999999999988865

>PLN02459 probable adenylate kinase

Probab=96.89  E-value=0.0015  Score=48.95  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +..+++|+|+||+||+|+..+|..
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~   51 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSK   51 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999888763

>TIGR01351 adk adenylate kinases

Probab=96.89  E-value=0.00076  Score=48.75  Aligned_cols=21  Identities=14%  Similarity=0.058  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ||+|+|+|||||||+..+|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.89  E-value=0.0012  Score=47.62  Aligned_cols=26  Identities=19%  Similarity=0.068  Sum_probs=22.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+...|.|.|++|||||||.+.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999888753

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.88  E-value=0.001  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.203  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+.++|++|+|||||++.+.+-
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.88  E-value=0.0009  Score=48.04  Aligned_cols=22  Identities=14%  Similarity=0.148  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (159)
                      |+|.|++|+||||+++.++...
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.87  E-value=0.001  Score=47.94  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.87  E-value=0.00094  Score=47.96  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++++|++|||||||+|-+.+
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            488999999999999997754

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.87  E-value=0.001  Score=48.99  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.87  E-value=0.00076  Score=46.61  Aligned_cols=21  Identities=14%  Similarity=0.164  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+++|++|+||||+.+.|...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999988754

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.87  E-value=0.0011  Score=47.61  Aligned_cols=23  Identities=17%  Similarity=0.107  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998643

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.87  E-value=0.00093  Score=47.74  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |.|.|++|||||||.+.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999988653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.87  E-value=0.001  Score=48.30  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999887543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.00031  Score=52.22  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=54.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE--EEEEECCeEEEEEEEeCCCccccccc-----cccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS--ANVMVDGRTVNLGLWDTAGQEDYNRL-----RPLS   90 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~   90 (159)
                      ......-|++.|+.+.  |++|++++...-. ...|+..-.|+  .....+...-..++|+++|.......     ....
T Consensus        41 ~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~  117 (363)
T KOG3929|consen   41 AEKFEFFIGSKGNGGK--TTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDT  117 (363)
T ss_pred             hccceeEEEEecCCce--eEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccc
Confidence            3446677888887655  8888888755532 23455443343  33322323344889999987654433     3333


Q ss_pred             ccCCcEEEEEEeCCChhhHH
Q 044772           91 YRGADVFILAFSLISRPSYE  110 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~  110 (159)
                      +..+ .+|++.|+++++.|.
T Consensus       118 l~~~-slIL~LDls~p~~~W  136 (363)
T KOG3929|consen  118 LRTF-SLILVLDLSKPNDLW  136 (363)
T ss_pred             hhhh-hheeeeecCChHHHH
Confidence            3333 678899999987764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.86  E-value=0.0011  Score=47.93  Aligned_cols=22  Identities=27%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.86  E-value=0.00097  Score=48.38  Aligned_cols=23  Identities=26%  Similarity=0.211  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.86  E-value=0.0011  Score=48.16  Aligned_cols=22  Identities=18%  Similarity=0.030  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00625 shikimate kinase; Provisional

Probab=96.85  E-value=0.0011  Score=46.70  Aligned_cols=21  Identities=19%  Similarity=0.083  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|+++|.+||||||+...|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988853

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.85  E-value=0.0011  Score=47.75  Aligned_cols=23  Identities=17%  Similarity=0.065  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999998653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.85  E-value=0.0032  Score=47.78  Aligned_cols=24  Identities=13%  Similarity=-0.017  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +...|=+.|.||+|||||+..|..
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~   73 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGR   73 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHH
Confidence            445788999999999999987753

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.85  E-value=0.0058  Score=38.86  Aligned_cols=82  Identities=15%  Similarity=0.144  Sum_probs=47.9

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           25 CVTVR-DGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        25 i~vvG-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      |.+.| ..|+|||++...+..--. ..-.+.      --+..+. .+.+.++|+|+....  .....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~v------l~~d~d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRV------LLIDLDP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcE------EEEeCCC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            56677 568999999766542211 110011      1111222 267899999876322  223667789999999887


Q ss_pred             CChhhHHhhhhhhHHH
Q 044772          104 ISRPSYENISKKKWVP  119 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~  119 (159)
                      + ..++..+.  .+++
T Consensus        72 ~-~~s~~~~~--~~~~   84 (104)
T cd02042          72 S-PLDLDGLE--KLLE   84 (104)
T ss_pred             C-HHHHHHHH--HHHH
Confidence            5 45566555  4444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.85  E-value=0.0011  Score=48.47  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          28 IVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.84  E-value=0.001  Score=48.33  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.84  E-value=0.0011  Score=45.19  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999987654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.84  E-value=0.0012  Score=47.15  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.83  E-value=0.0012  Score=47.97  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999988653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.83  E-value=0.0011  Score=48.63  Aligned_cols=22  Identities=23%  Similarity=0.178  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          28 IHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999988764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.82  E-value=0.0012  Score=48.34  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          33 IFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.81  E-value=0.0011  Score=48.05  Aligned_cols=24  Identities=21%  Similarity=0.069  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -.+.++|++|+|||||++.+.+-.
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            358899999999999999888653

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.81  E-value=0.0012  Score=48.09  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999888654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.81  E-value=0.0013  Score=46.23  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+.++|++|+|||||++.+.+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.80  E-value=0.0011  Score=48.67  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          29 FVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999998643

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.80  E-value=0.0013  Score=48.30  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        37 ~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         37 MMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998653

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.80  E-value=0.0012  Score=47.70  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999888653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK08233 hypothetical protein; Provisional

Probab=96.80  E-value=0.0014  Score=45.87  Aligned_cols=22  Identities=23%  Similarity=0.018  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+|.|.+|+|||||.++|..
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5577789999999999999874

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.80  E-value=0.0013  Score=46.24  Aligned_cols=23  Identities=13%  Similarity=0.034  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+|+++|++|+|||||...+...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988743

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.80  E-value=0.0014  Score=45.55  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999887654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.79  E-value=0.0013  Score=46.94  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        28 ALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999888643

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.79  E-value=0.0013  Score=47.95  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          33 TLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999888653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.0012  Score=49.08  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -+.++||+|+|||||+..+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999987

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.78  E-value=0.0013  Score=47.57  Aligned_cols=23  Identities=22%  Similarity=0.117  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          33 VTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999887643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.78  E-value=0.0013  Score=49.01  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++|+|++|+|||||++.+.+-.
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         29 LLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988653

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.78  E-value=0.0012  Score=47.42  Aligned_cols=23  Identities=17%  Similarity=0.052  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          28 IYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            58899999999999999988643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.78  E-value=0.0014  Score=45.59  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          29 RLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999988653

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.78  E-value=0.0013  Score=47.55  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          27 FLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            58999999999999999887643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.77  E-value=0.0014  Score=46.93  Aligned_cols=23  Identities=26%  Similarity=0.143  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         29 LLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999887654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.77  E-value=0.0015  Score=46.10  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          27 IVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999887643

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF05729 NACHT: NACHT domain

Probab=96.77  E-value=0.0013  Score=45.04  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      ++|.|++|+|||+++.++...
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            688999999999999988743

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.76  E-value=0.0014  Score=47.18  Aligned_cols=23  Identities=30%  Similarity=0.232  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         30 ALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999988754

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=96.76  E-value=0.0013  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+--
T Consensus        31 iv~llG~NGaGKTTlLkti~Gl~   53 (237)
T COG0410          31 IVALLGRNGAGKTTLLKTIMGLV   53 (237)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998644

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.75  E-value=0.0015  Score=46.16  Aligned_cols=23  Identities=17%  Similarity=-0.083  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          28 IVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999888654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.75  E-value=0.0013  Score=48.42  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          30 LVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999998653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=96.75  E-value=0.0015  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         30 MAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988643

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.75  E-value=0.0052  Score=39.57  Aligned_cols=101  Identities=20%  Similarity=0.105  Sum_probs=55.8

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           25 CVTVR-DGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        25 i~vvG-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      |+++| ..|+|||++...|...-.......+.      -+..| .....+.+.|+++....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~------l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVL------LVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEE------EEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence            34444 67899999876654221111000110      00111 00116899999875322  23356778999999887


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC-C-CCCEEEEeeC
Q 044772          103 LISRPSYENISKKKWVPELRHYA-P-SVPIVLVGTK  136 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~-~-~~piilv~nK  136 (159)
                      .+ ..+...+.  .+++.+.+.. + ...+.+|.|+
T Consensus        74 ~~-~~s~~~~~--~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QD-LPSIRNAK--RLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CC-hHHHHHHH--HHHHHHHHcCCCCcCceEEEecC
Confidence            66 44566555  5666555443 2 3567777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-66
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		4e-66
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		4e-66
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-57
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-49
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-49
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		4e-49
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		4e-49
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		4e-49
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-49
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-49
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-49
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		5e-49
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-48
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-48
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-48
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-48
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-48
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-48
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-48
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-48
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-48
1mh1_A	186	Small G-Protein Length = 186		4e-48
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-48
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-48
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		5e-48
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		5e-48
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-48
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-48
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-47
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-47
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-47
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-46
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		5e-43
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		6e-43
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		6e-43
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		6e-43
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		6e-43
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		7e-43
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		7e-43
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		7e-43
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		7e-43
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		7e-43
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		7e-43
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		7e-43
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		7e-43
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		7e-43
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		7e-43
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-42
2kb0_A	178	Cdc42(T35a) Length = 178		2e-42
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-42
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-42
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		5e-42
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		5e-42
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		7e-42
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		8e-42
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-40
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-39
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		9e-38
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-37
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-37
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-37
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-37
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-37
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-37
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-37
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-37
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-37
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-37
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		4e-37
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		4e-37
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-37
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		4e-37
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-37
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-36
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-36
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		4e-36
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-34
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-33
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-33
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		7e-30
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-23
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-23
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-23
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-22
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-22
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-22
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-18
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-18
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-18
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-18
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-18
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		6e-18
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-18
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-18
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		9e-18
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-17
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-17
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-17
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-17
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-17
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-17
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-17
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-17
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-17
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-17
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-17
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-17
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		6e-17
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		7e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		7e-17
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		7e-17
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		8e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		8e-17
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		9e-17
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-15
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-15
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-15
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-15
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-15
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-15
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-15
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-15
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-15
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-15
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-15
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-15
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		7e-15
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-14
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-14
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-14
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-14
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-14
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-14
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-14
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-14
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-14
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-14
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-14
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-14
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-14
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-14
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-14
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-14
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-14
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-14
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-14
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-14
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-14
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		5e-14
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-14
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-14
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		6e-14
6q21_A	171	Molecular Switch For Signal Transduction: Structura		6e-14
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		6e-14
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-14
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-14
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		6e-14
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		7e-14
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		7e-14
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		7e-14
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		8e-14
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		8e-14
4q21_A	189	Molecular Switch For Signal Transduction: Structura		8e-14
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		8e-14
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		9e-14
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-13
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-13
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-13
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-13
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-13
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-13
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-13
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-13
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-13
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-13
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-13
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-13
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-13
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-13
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-13
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-13
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-13
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-13
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-13
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-13
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-13
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-13
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-13
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-13
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-13
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		3e-13
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-13
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-13
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		3e-13
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-13
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-13
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-13
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-13
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-13
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-13
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		5e-13
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		5e-13
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-13
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-13
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-13
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		6e-13
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		7e-13
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		7e-13
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-13
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		7e-13
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		8e-13
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-13
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-12
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-12
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-12
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-12
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-12
1byu_A	216	Canine Gdp-Ran Length = 216		1e-12
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-12
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-12
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-12
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-12
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-12
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-12
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-12
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		4e-12
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		5e-12
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		6e-12
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-12
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		8e-12
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-11
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-11
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-11
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-11
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-11
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-11
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-11
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-11
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-11
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-11
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-11
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		5e-11
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		7e-11
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		7e-11
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-10
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-10
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-10
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-10
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		3e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		4e-10
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-10
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-10
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-09
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-09
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-09
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-09
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		4e-09
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-08
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-08
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-07
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-07
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		4e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		5e-07
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		5e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-05
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		6e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		8e-05
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-04
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-04
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		5e-04
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		6e-04

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  248 bits (633), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/139 (83%), Positives = 128/139 (92%), Gaps = 1/139 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           +FIKCVTV DGAVGKTC+LISYT NTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ 64
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDYNRLRPLSYRGADVFILAFSLIS+ SYEN++ KKW+PELRHYAP VPI+LVGTKLDLR
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLDLR 123
Query: 141 KDRQFHLDYPGAYTISTEQ 159
            D+QF +D+PGA  I+T Q
Sbjct: 124 DDKQFFIDHPGAVPITTNQ 142

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  246 bits (628), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 116/139 (83%), Positives = 128/139 (92%), Gaps = 1/139 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           +FIKCVTV DGAVGKTC+LISYTGNTFPTDYVPTVFDNFSANV+VDG TVNLGLWDTAGQ
Sbjct: 5   RFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDYNRLRPLSYRGADVF+LAFSLIS+ SYENI  KKW+PEL+HYAP +PIVLVGTKLDLR
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENI-HKKWLPELKHYAPGIPIVLVGTKLDLR 123
Query: 141 KDRQFHLDYPGAYTISTEQ 159
            D+QF  D+PGA +I+T Q
Sbjct: 124 DDKQFLKDHPGAASITTAQ 142

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  246 bits (628), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 128/139 (92%), Gaps = 1/139 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           +FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDTAGQ
Sbjct: 7   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDYNRLRPLSYRGADVFILAFSLIS+ SYEN+S KKW+PEL+HYAP VPIVLVGTKLDLR
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIVLVGTKLDLR 125
Query: 141 KDRQFHLDYPGAYTISTEQ 159
            D+QF +D+PGA  I+T Q
Sbjct: 126 DDKQFFIDHPGAVPITTVQ 144

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  217 bits (553), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/134 (76%), Positives = 116/134 (86%), Gaps = 1/134 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           KFIKCVTV DGAVGKTC+LI YT N FPTDY+PTVFDNFSANV VDG+ VNLGLWDTAGQ
Sbjct: 8   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDY+RLRPLSYRGAD+F+LAFSLIS+ SYEN+  KKW+PELR +AP+VPIVLVGTKLDLR
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENV-LKKWMPELRRFAPNVPIVLVGTKLDLR 126
Query: 141 KDRQFHLDYPGAYT 154
            D+ +  D+    T
Sbjct: 127 DDKGYLADHTNVIT 140

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVD + VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  SYEN+ + KW PE+RH+ PS PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENV-RAKWFPEVRHHCPSTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  190 bits (483), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 141
Query: 143 R 143
           +
Sbjct: 142 K 142

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  189 bits (481), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  189 bits (480), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 149
Query: 143 R 143
           +
Sbjct: 150 K 150

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  189 bits (480), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  188 bits (477), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P  PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPHTPILLVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  188 bits (477), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P  PI+LVGTKLDLR D
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPHTPILLVGTKLDLRDD 123
Query: 143 R 143
           +
Sbjct: 124 K 124

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGK CLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 70
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 129
Query: 143 R 143
           +
Sbjct: 130 K 130

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P  PI+LVGTKLDLR D
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPHTPILLVGTKLDLRDD 123
Query: 143 R 143
           +
Sbjct: 124 K 124

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N  P +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 149
Query: 143 R 143
           +
Sbjct: 150 K 150

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  187 bits (474), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N F  +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 132
Query: 143 R 143
           +
Sbjct: 133 K 133

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  186 bits (473), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V D AVGKTCLLISYT N FP +Y+PTVFDN+SANVMVD + VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  SYEN+ + KW PE+RH+ PS PI+LVGTKLDLR D
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENV-RAKWFPEVRHHCPSTPIILVGTKLDLRDD 129
Query: 143 R 143
           +
Sbjct: 130 K 130

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  186 bits (473), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DV ++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  186 bits (473), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V D AVGKTCLLISYT N FP +Y+PTVFDN+SANVMVD + VNLGLWDTAGQED
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  SYEN+ + KW PE+RH+ PS PI+LVGTKLDLR D
Sbjct: 70  YDRLRPLSYPQTDVFLICFSLVSPASYENV-RAKWFPEVRHHCPSTPIILVGTKLDLRDD 128
Query: 143 R 143
           +
Sbjct: 129 K 129

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  186 bits (473), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DV ++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 124
Query: 143 R 143
           +
Sbjct: 125 K 125

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  186 bits (473), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DV ++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 126
Query: 143 R 143
           +
Sbjct: 127 K 127

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  186 bits (473), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG ED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 125
Query: 143 R 143
           +
Sbjct: 126 K 126

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DV ++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG ED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 149
Query: 143 R 143
           +
Sbjct: 150 K 150

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  186 bits (471), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 122
Query: 143 R 143
           +
Sbjct: 123 K 123

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG 
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDY+RLRPLSY   DVF++ FSL+S  S+ ++ + KW PE+RH+ P+ PI+LVGTKLDLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHV-RAKWYPEVRHHCPNTPIILVGTKLDLR 272
Query: 141 KDR 143
            D+
Sbjct: 273 DDK 275

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG 
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDY+RLRPLSY   DVF++ FSL+S  S+ ++ + KW PE+RH+ P+ PI+LVGTKLDLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHV-RAKWYPEVRHHCPNTPIILVGTKLDLR 272
Query: 141 KDR 143
            D+
Sbjct: 273 DDK 275

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAG 
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDY+RLRPLSY   DVF++ FSL+S  S+ ++ + KW PE+RH+ P+ PI+LVGTKLDLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHV-RAKWYPEVRHHCPNTPIILVGTKLDLR 272
Query: 141 KDR 143
            D+
Sbjct: 273 DDK 275

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 106/140 (75%), Gaps = 20/140 (14%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 83  YNRLRPLSY--------------RG-----ADVFILAFSLISRPSYENISKKKWVPELRH 123
           Y+RLRPLSY              RG     ADVF++ FSL+S  S+EN+ + KW PE+RH
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENV-RAKWYPEVRH 124
Query: 124 YAPSVPIVLVGTKLDLRKDR 143
           + P+ PI+LVGTKLDLR D+
Sbjct: 125 HCPNTPIILVGTKLDLRDDK 144

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  169 bits (428), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 132

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  169 bits (428), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 124

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  169 bits (428), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 70
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 129

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  169 bits (428), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  169 bits (428), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 124

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 123

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 126

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  169 bits (428), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  169 bits (427), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 125

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  169 bits (427), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  169 bits (427), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  169 bits (427), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 125

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  167 bits (424), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  167 bits (424), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVP VFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGK CLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 70
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 129

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N  P++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  166 bits (420), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  166 bits (420), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  166 bits (419), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAG ED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 126

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  166 bits (419), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V D AVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 98/121 (80%), Gaps = 1/121 (0%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE 81
            +KCV V DGAVGKTCLL+SY  + FP +YVPTVFD+++ +V V G+   LGL+DTAGQE
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
           DY+RLRPLSY   DVF++ FS+++  S++N+ K++WVPEL+ YAP+VP +L+GT++DLR 
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNV-KEEWVPELKEYAPNVPFLLIGTQIDLRD 136
Query: 142 D 142
           D
Sbjct: 137 D 137

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 98/126 (77%), Gaps = 1/126 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           +KCV V DGAVGKT L++SYT N +PT+Y+PT FDNFSA V VDGR V L L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +++LRPL Y   D+F+L FS++S  S++N+S +KWVPE+R + P  PI+LVGT+ DLR+D
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVS-EKWVPEIRCHCPKAPIILVGTQSDLRED 139
Query: 143 RQFHLD 148
            +  ++
Sbjct: 140 VKVLIE 145

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  152 bits (383), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR+D 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 144 Q 144
Sbjct: 146 H 146

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  152 bits (383), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR+D 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 144 Q 144
Sbjct: 146 H 146

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  152 bits (383), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 144 Q 144
Sbjct: 128 H 128

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  152 bits (383), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 144 Q 144
Sbjct: 127 H 127

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 144 Q 144
Sbjct: 128 H 128

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 144 Q 144
Sbjct: 129 H 129

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 144 Q 144
Sbjct: 128 H 128

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 71  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 144 Q 144
Sbjct: 130 H 130

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KWVPE++H+ P+VPI+LV  K DLR D 
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIP-EKWVPEVKHFCPNVPIILVANKKDLRSDE 145
Query: 144 QFHLD 148
               +
Sbjct: 146 HVRTE 150

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI  + + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR+D 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 144 Q 144
Sbjct: 126 H 126

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI  + + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI  + + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 144 Q 144
Sbjct: 124 H 124

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI  + + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI  + + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 144 Q 144
Sbjct: 124 H 124

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI  + + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V D A GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 144 Q 144
Sbjct: 127 H 127

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  146 bits (369), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V D A GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQEDY
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +R RPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 67  DRARPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 144 Q 144
Sbjct: 126 H 126

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  146 bits (369), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI  + + FP  YVPTVF+N+ A++ VDG+ V L LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D 
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 144 Q 144
Sbjct: 129 H 129

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DGA GKTCLLI  +   FP  YVPTVF+N+ A+V VDGR V L LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           +RLRPLSY  ++V ++ FS+    S EN+ ++KW+ E+ H+   VPI+LVG K+DLR D 
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENV-QEKWIAEVLHFCQGVPIILVGCKVDLRNDP 130
Query: 144 Q 144
           Q
Sbjct: 131 Q 131

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           K +K V V DGAVGKTCLL++++    PT YVPTVF+NFS  +        L LWDTAGQ
Sbjct: 21  KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           E+Y+RLRPLSY  +DV +L F++ +R S++NIS  KW PE++HY  +   VLVG K+DLR
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS-TKWEPEIKHYIDTAKTVLVGLKVDLR 139
Query: 141 KD 142
           KD
Sbjct: 140 KD 141

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           K +K V V DGAVGKTCLL++++    PT YVPTVF+NFS  +        L LWDTAGQ
Sbjct: 22  KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           E+Y+RLRPLSY  +DV +L F++ +R S++NIS  KW PE++HY  +   VLVG K+DLR
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS-TKWEPEIKHYIDTAKTVLVGLKVDLR 140
Query: 141 KD 142
           KD
Sbjct: 141 KD 142

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           +K V V DG  GKT LL+ +    FP  Y PTVF+ +  N+ V G+ V+L +WDTAGQ+D
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPL Y  A V +L F + S  S++NI   +W PE+ H+   VPI++VG K DLRKD
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIF-NRWYPEVNHFCKKVPIIVVGCKTDLRKD 153
Query: 143 RQF 145
           +  
Sbjct: 154 KSL 156

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 23  IKC--VTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           +KC  V V D   GKT LL  +  + FP +YVPTVF+N++A+  +D + + L LWDT+G 
Sbjct: 22  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 81
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             Y+ +RPLSY  +D  ++ F  ISRP   +   KKW  E++ + P+  ++LVG K DLR
Sbjct: 82  PYYDNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 140
Query: 141 KD 142
            D
Sbjct: 141 TD 142

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 23  IKC--VTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           +KC  V V D   GKT LL  +  + FP +YVPTVF+N++A+  +D + + L LWDT+G 
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             Y+ +RPLSY  +D  ++ F  ISRP   +   KKW  E++ + P+  ++LVG K DLR
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124
Query: 141 KD 142
            D
Sbjct: 125 TD 126

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 23  IKC--VTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           +KC  V V D   GKT LL  +  + FP +YVPTVF+N++A+  +D + + L LWDT+G 
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
             Y+ +RPLSY  +D  ++ F  ISRP   +   KKW  E++ + P+  ++LVG K DLR
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145
Query: 141 KD 142
            D
Sbjct: 146 TD 147

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V V D   GKT +L     + +P  YVPTVF+N++A +  + + V L LWDT+G   
Sbjct: 12  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+ +RPL Y  +D  +L F  ISRP   + + KKW  E+  Y PS  ++L+G K DLR D
Sbjct: 72  YDNVRPLCYSDSDAVLLCFD-ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
Query: 143 RQ--FHLDYPGAYTISTEQ 159
                 L +     IS EQ
Sbjct: 131 LSTLMELSHQKQAPISYEQ 149

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V V D   GKT +L     + +P  YVPTVF+N++A +  + + V L LWDT+G   
Sbjct: 11  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+ +RPL Y  +D  +L F  ISRP   + + KKW  E+  Y PS  ++L+G K DLR D
Sbjct: 71  YDNVRPLCYSDSDAVLLCFD-ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
Query: 143 RQ--FHLDYPGAYTISTEQ 159
                 L +     IS EQ
Sbjct: 130 LSTLMELSHQKQAPISYEQ 148

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V V D   GKT +L     + +P  YVPTVF+N++A +  + + V L LWDT+G   
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+ +RPL Y  +D  +L F  ISRP   + + KKW  E+  Y PS  ++L+G K DLR D
Sbjct: 88  YDNVRPLCYSDSDAVLLCFD-ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
Query: 143 RQ--FHLDYPGAYTISTEQ 159
                 L +     IS EQ
Sbjct: 147 LSTLMELSHQKQAPISYEQ 165

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + +G VGKT L++ Y  N F   ++ T+  +F +  + + G+ VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK 141
           ++ L P+ YR ++  IL + +    S++ +  K WV ELR      + + +VG K+DL K
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 142 DRQFHLDYPGAYTIS 156
           +R   +    +Y  S
Sbjct: 126 ERHVSIQEAESYAES 140

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T N F  +   T+   F+  ++ VDG+T+   +WDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E Y R+    YRGA   +L + +    +YEN+  ++W+ ELR +A S + I+LVG K DL
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 140 RKDRQFHLDYPGAY 153
           R  R    D   A+
Sbjct: 123 RHLRAVPTDEARAF 136

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + +G VGKT L++ Y  N F   ++ T+  +F +  + + G+ VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK 141
           ++ L P+ YR ++  IL + +    S++ +  K WV ELR      + + +VG K+DL K
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 142 DRQFHLDYPGAYTIS 156
           +R   +    +Y  S
Sbjct: 126 ERHVSIQEAESYAES 140

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + +G VGKT L++ Y  N F   ++ T+  +F +  + + G+ VNL +WDTAGQE 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRK 141
           ++ L P+ YR ++  IL + +    S++ +  K WV ELR      + + +VG K+DL K
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 142 DRQFHLDYPGAYTIS 156
           +R   +    +Y  S
Sbjct: 140 ERHVSIQEAESYAES 154

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
            +K + + DG VGK+ L+  Y  N F +    T+   F + ++ VDGR V L +WDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGT 135
           E +  LR   YRGAD  +L FS+  R S+EN+    W  E  +YA        P V++G 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG--NWQKEFIYYADVKDPEHFPFVVLGN 124
Query: 136 KLDLRKDRQ 144
           K+D ++DRQ
Sbjct: 125 KVD-KEDRQ 132

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
             K + + +  VGK+CLL+ ++ +T+  DY+ T+  +F    V +DG+TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKLDL 139
           E +  +    YRG+   I+ + +  + S+  +  K W+ E+  YA S  + +LVG K DL
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV--KMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 140 RKDRQFHLDYPGAY 153
           +  R    D    +
Sbjct: 126 KDKRVVEYDVAKEF 139

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T N F  +   T+   F+  ++ VDG+T+   +WDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E Y  +    YRGA   +L + +    +YEN+  ++W+ ELR +A S + I+LVG K DL
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 140 RKDRQFHLDYPGAY 153
           R  R    D   A+
Sbjct: 138 RHLRAVPTDEARAF 151

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
             K + + +  VGK+CLL+ ++ +T+  DY+ T+  +F    V +DG+TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKLDL 139
           E +  +    YRG+   I+ + +  + S+  +  K W+ E+  YA S  + +LVG K DL
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV--KMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 140 RKDRQFHLDYPGAY 153
           +  R    D    +
Sbjct: 126 KDKRVVEYDVAKEF 139

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T N F  +   T+   F+  ++ VDG+T+   +WDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E Y  +    YRGA   +L + +    +YEN+  ++W+ ELR +A S + I+LVG K DL
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 140 RKDRQFHLDYPGAY 153
           R  R    D   A+
Sbjct: 147 RHLRAVPTDEARAF 160

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
             K + + +  VGK+CLL+ ++ +T+  DY+ T+  +F    V +DG+TV L +WDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKLDL 139
           E +  +    YRG+   I+ + +  + S+  +  K W+ E+  YA S  + +LVG K DL
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV--KMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 140 RKDRQFHLD 148
           +  R    D
Sbjct: 139 KDKRVVEYD 147

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + SY N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV--KQWLQEIDRYASENVNKLLVGNKSDL 126

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + SY N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV--KQWLQEIDRYASENVNKLLVGNKSDL 126

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 116

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 123

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 123

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + ++ +TV L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  R S++N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV--KQWIQEIDRYAMENVNKLLVGNKCDL 126
Query: 140 RKDR 143
              R
Sbjct: 127 VSKR 130

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 150

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 142

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGIKCDL 125

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 133

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T N F  +   T+   F+  ++ VDG+T+   +WDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E Y  +    YRGA   +L + +    +YEN+  ++W+ ELR +A S + I+LVG K DL
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 140 RKDRQFHLDYPGAY 153
           R  R    D   A+
Sbjct: 126 RHLRAVPTDEARAF 139

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 133

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T N F  +   T+   F+  ++ VDG+T+   +WDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E Y  +    YRGA   +L + +    +YEN+  ++W+ ELR +A S + I+LVG K DL
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 140 RKDRQFHLDYPGAY 153
           R  R    D   A+
Sbjct: 147 RHLRAVPTDEARAF 160

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
            K + + DG VGK+ L+  Y  N F T    T+   F + ++ VDG  V + +WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTK 136
            +  LR   YRG+D  +L FS+    S++N+S   W  E  +YA      S P V++G K
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNK 125
Query: 137 LDLRKDRQFHLDYPGAY 153
           +D+  +RQ   +   A+
Sbjct: 126 IDI-SERQVSTEEAQAW 141

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
           IK V V +GAVGK+ ++  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
           +++ +    YRGA   +L FS   R S+E IS   W  ++      +P  LV  K+DL  
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAIS--SWREKVVAEVGDIPTALVQNKIDLLD 123
Query: 142 D 142
           D
Sbjct: 124 D 124

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
            K + + DG VGK+ L+  Y  N F T    T+   F + ++ VDG  V + +WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTK 136
            +  LR   YRG+D  +L FS+    S++N+S   W  E  +YA      S P V++G K
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNK 127
Query: 137 LDLRKDRQFHLDYPGAY 153
           +D+  +RQ   +   A+
Sbjct: 128 IDI-SERQVSTEEAQAW 143

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T N F  +   T+   F+  ++ VDG+T+   +WDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E Y  +    YRGA   +L + +    +YEN+  ++W+ ELR +A S + I LVG K DL
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 140 RKDRQFHLDYPGAY 153
           R  R    D   A+
Sbjct: 123 RHLRAVPTDEARAF 136

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 28  VRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRL 86
           + D  VGK+CLL+ +  +T+   Y+ T+  +F    + +DG+T+ L +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 87  RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
               YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T N F  +   T+   F+  ++ VDG+T+   +WDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E Y  +    YRGA   +L + +    +YEN+  ++W+ ELR +A S + I LVG K DL
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIXLVGNKSDL 128
Query: 140 RKDRQFHLDYPGAY 153
           R  R    D   A+
Sbjct: 129 RHLRAVPTDEARAF 142

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
            K + + DG VGK+ L+  Y  N F +    T+   F + ++ VDG  V + +WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTK 136
            +  LR   YRG+D  +L FS+    S++N+S   W  E  +YA      S P V++G K
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNK 129
Query: 137 LDLRKDRQFHLDYPGAY 153
            D+ K+RQ   +   A+
Sbjct: 130 TDI-KERQVSTEEAQAW 145

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+   F + +V +D  TV   +WDTAGQE 
Sbjct: 10  KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + ++ ++     K WV EL R  +PS+ I L G K DL  
Sbjct: 70  YHSLAPMYYRGAQAAIVVYDITNQETFAR--AKTWVKELQRQASPSIVIALAGNKADLAN 127
Query: 142 DRQFHLDYPGAYT 154
            R    +   AY 
Sbjct: 128 KRMVEYEEAQAYA 140

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R   +R  + F+L FS+    S+   ++ ++ +  ++     +P+++VG K DL + 
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 143 RQ 144
           RQ
Sbjct: 125 RQ 126

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R   +R  + F+L FS+    S+   ++ ++ +  ++     +P+++VG K DL + 
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 143 RQ 144
           RQ
Sbjct: 129 RQ 130

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V    VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + +R    R  + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQE 81
           K + V D  VGKTCLL+ +    F    ++ TV  +F   V+ VDG  V L +WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLR 140
            +  +    YR A   +L + + ++ S++NI  + W+ E+  YA   V ++L+G K+D  
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNI--QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 141 KDR 143
            +R
Sbjct: 130 HER 132

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V    VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + +R    R  + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 64/116 (55%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V    VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + +R    R  + F+  F++ +  S+E+I   +   +    +  VP+VLVG K DL
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  ++     K WV EL R  +P++ I L G K DL  
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR--AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 142 DRQFHLDYPGAY 153
            R        AY
Sbjct: 125 KRAVEFQEAQAY 136

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V    VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + +R    R  + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V    VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + +R    R  + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R   +R  + F+  FS+    S+   +  ++ +  ++    +VP +LVG K DL   
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 138
Query: 143 RQFHLD 148
           RQ  ++
Sbjct: 139 RQVSVE 144

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R   +R  + F+  FS+    S+   +  ++ +  ++    +VP +LVG K DL   
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 143 RQFHLD 148
           RQ  ++
Sbjct: 127 RQVSVE 132

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 5   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  ++     K WV EL R  +P++ I L G K DL  
Sbjct: 65  YHSLAPMYYRGAQAAIVVYDITNTDTFAR--AKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 142 DRQFHLDYPGAY 153
            R        AY
Sbjct: 123 KRAVEFQEAQAY 134

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGKTC+L  ++ + F + ++ T+  +F    + +DG+ + L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLRK 141
           +  +    YRGA   +L + + +  S++NI  + W+  +  +A + V  +++G K D+  
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVND 125
Query: 142 DRQ 144
            RQ
Sbjct: 126 KRQ 128

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 64/116 (55%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V    VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + +R    R  + F+  F++ +  S+E+I   +   +    +  VP+VLVG K DL
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R   +R  + F+  FS+    S+   +  ++ +  ++    +VP +LVG K DL   
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 143 RQFHLD 148
           RQ  ++
Sbjct: 125 RQVSVE 130

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGKTC+L  ++ + F + ++ T+  +F    + +DG+ + L +WDTAGQE 
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLRK 141
           +  +    YRGA   +L + + +  S++NI  + W+  +  +A + V  +++G K D+  
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVND 127
Query: 142 DRQ 144
            RQ
Sbjct: 128 KRQ 130

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R   +R  + F+  FS+    S+   +  ++ +  ++    +VP +LVG K DL   
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 134
Query: 143 RQFHLD 148
           RQ  ++
Sbjct: 135 RQVSVE 140

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 9   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 69  YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 127 KRAVDFQEAQSYA 139

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 126 KRAVDFQEAQSYA 138

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I +  + F TDY PT+ D+++   ++D R   L + DTAGQE++  +R    R  
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 95  DVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
           + F+L FS+  R S+E I K ++ +  ++      P++L+G K DL   RQ
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADLDHQRQ 127

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 9   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P  YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 69  YHSLAPXYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 127 KRAVDFQEAQSYA 139

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
             K V + +  VGKTCL+  +T   FP     T+  +F    V ++G  V L +WDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E +  +    YR A+  IL + +    S+  +   +W+ E+  YA + V  VLVG K+DL
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLP--EWLREIEQYASNKVITVLVGNKIDL 143
Query: 140 RKDRQ 144
            + R+
Sbjct: 144 AERRE 148

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+ LL+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD 138
           E +  +    YRG    I+ + + S  S+ N+  K+W+ E+      V  +LVG K D
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV--KRWLHEINQNCDDVCRILVGNKND 124

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +T   F   +  T+   F A ++ +DG+ + L +WDTAGQ
Sbjct: 10  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E +  +    YRGA   +L + +  R ++ +++   W+ + R ++ S + I+L+G K DL
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLT--TWLEDARQHSNSNMVIMLIGNKSDL 127
Query: 140 RKDRQFHLDYPGAY 153
              R+   +   A+
Sbjct: 128 ESRREVKKEEGEAF 141

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
             K + +     GK+CLL  +  N F  D   T+   F + V+ V G+TV L +WDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   +L + + SR +Y +++   W+ + R  A P++ ++L G K DL
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA--AWLTDARTLASPNIVVILCGNKKDL 142
Query: 140 RKDRQ 144
             +R+
Sbjct: 143 DPERE 147

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQ 80
             K + + D  VGK+CLL+ +T   F   +  T+   F A  V +DG+ + L +WDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDL 139
           E +  +    YRGA   +L + +  R ++ +++   W+ + R H + ++ I+L+G K DL
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLT--SWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 140 RKDRQFHLDYPGAYT 154
              R    +   A+ 
Sbjct: 139 ESRRDVKREEGEAFA 153

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + +  VGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 8   KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 126 KRAVDFQEAQSYA 138

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + +  VGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 8   KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 126 KRAVDFQEAQSYA 138

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + +  VGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 8   KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 126 KRAVDFQEAQSYA 138

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + +  VGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 8   KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 126 KRAVDFQEAQSYA 138

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + +  VGK+ L++ +    F      T+   F +  V +D  TV   +WDTAGQE 
Sbjct: 8   KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 126 KRAVDFQEAQSYA 138

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+   F +  V +D  TV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  ++     K WV EL R  +P++ I L G K DL  
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR--AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 142 DRQFHLDYPGAYT 154
            R        AY 
Sbjct: 125 KRAVEFQEAQAYA 137

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             +R   +R  + F+  FS+    S+   +  ++ +  ++    +VP +LVG K DL   
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 143 RQFHLD 148
           RQ  ++
Sbjct: 127 RQVSVE 132

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + D   GK+ L++ +  + F      T+   F S  + V+  TV   +WDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ F + ++ S+E    KKWV EL+    P++ + L G K DL  
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER--AKKWVQELQAQGNPNMVMALAGNKSDLLD 131
Query: 142 DRQ 144
            R+
Sbjct: 132 ARK 134

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
             K V V D +VGKTC++  +    F      T+  +F+   + + G+ V L +WDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDL 139
           E +  +    YR A+  ILA+ +  R S+  +S   W+ ++R YA S +  +L+G K DL
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSF--LSVPHWIEDVRKYAGSNIVQLLIGNKSDL 146
Query: 140 RKDRQFHL 147
            + R+  L
Sbjct: 147 SELREVSL 154

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
            +K + + D  VGKT L+  Y    F   Y  T+  +F +  VMVD R V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP----SVPIVLVGT 135
           E +  L    YRGAD  +L F + +  +++ +    W  E L   +P    + P V++G 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KLDLRKDRQFHLDYPGAYTIS 156
           K+DL ++RQ       A+  S
Sbjct: 126 KIDL-ENRQVATKRAQAWCYS 145

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG-RTVNLGLWDTAG 79
            +K + + D  VGKT L+  Y  + +   Y  T+  +F +  V VDG +   + +WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVG 134
           QE +  L    YRGAD  +L + + +  S+ENI  K W  E   +A      + P V++G
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENI--KSWRDEFLVHANVNSPETFPFVILG 125
Query: 135 TKLDLRKDRQF 145
            K+D  + ++ 
Sbjct: 126 NKIDAEESKKI 136

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
            +K + + D  VGKT L+  Y    F   Y  T+  +F +  VMVD R V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP----SVPIVLVGT 135
           E +  L    YRGAD  +L F + +  +++ +    W  E L   +P    + P V++G 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KLDLRKDRQFHLDYPGAYTIS 156
           K+DL ++RQ       A+  S
Sbjct: 126 KIDL-ENRQVATKRAQAWCYS 145

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+   F +  V +D  TV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL R  +P++ I L G K DL  
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNEESFAR--AKNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 142 DRQFHLDYPGAYT 154
            R        +Y 
Sbjct: 125 KRAVDFQEAQSYA 137

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQE 81
           +K + + +  VGK+ LL+ +T +TF  +   T+  +F    + VDG    L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIV--LVGTKLDL 139
            +  L P  YRGA   IL + +  R ++  +    W+ EL  Y     IV  LVG K+D 
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNXLVGNKID- 132
Query: 140 RKDRQ 144
           +++R+
Sbjct: 133 KENRE 137

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV--MVDGRTVNLGLWDTAG 79
             K V + D  VGK+ LL  +T + F  +   T+   F+     + + + +   +WDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLD 138
           QE Y  +    YRGA   +L + +  + S+ENI  +KW+ ELR  A S + I+LVG K D
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENI--EKWLKELRDNADSNIVILLVGNKSD 124
Query: 139 LRKDR 143
           L+  R
Sbjct: 125 LKHLR 129

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL  +T   F  D   T+   F   ++ V G+ + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           +  +    YRGA   ++ + +  R +Y ++S   W+ + R+   P+  I+L+G K DL  
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIILIGNKADLEA 134
Query: 142 DR 143
            R
Sbjct: 135 QR 136

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQ 80
            +K + + D  VGK+CLL+ +  + F   ++ T+  +F    V ++G+ V L LWDTAGQ
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YRGA   IL + +    ++ NI  K+W   +  +A     ++LVG K D+
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 140 R 140
Sbjct: 138 E 138

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T N F  D   T+   F+   + ++G+ +   +WDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E Y  +    YRGA   ++ + +    SYEN +   W+ ELR  A  +V + L+G K DL
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCN--HWLSELRENADDNVAVGLIGNKSDL 130

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 83  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 127

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
           IK V + + AVGK+ +++ +  N F  +  PT+   F +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLD 138
            +  L P  YR A   ++ + +    S+  I  + WV EL   A   + I LVG K+D
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKID 119

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQE 81
           +K + + D  VGK+CLL+ +  + F   ++ T+  +F    V ++G+ V L LWDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRGA   IL + +    ++ NI  K+W   +  +A     ++LVG K D+ 
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSDME 125

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQE 81
            K + + + +VGKT  L  Y  +TF   +V TV  +F    V    + V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            Y  +    YRGA  FIL + + +  S+  +  + W  +++ Y+  +  ++LVG K D+ 
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAV--QDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 141 KDR 143
           ++R
Sbjct: 142 EER 144

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K  L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
            +K + + D  VGKT L+  Y    F   Y  T+  +F +  VMVD R V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP----SVPIVLVGT 135
           E +  L    YRGAD  +L F + +  +++ +    W  E L   +P    + P V++G 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KLDLRKDRQFHLDYPGAYTIS 156
           K+D  ++RQ       A+  S
Sbjct: 126 KIDF-ENRQVATKRAQAWCYS 145

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQE 81
           +K + + D  VGK+CLL+ +  + F   ++ T+  +F    V ++G+ V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRGA   IL + +    ++ NI  K+W   +  +A     ++LVG K D+ 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSDME 121

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F   Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + +VGKT L+  +  ++F   Y  T+  D  S  + ++ RTV L LWDTAGQE 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
           +  L P   R + V ++ + + +  S++  S  KW+ ++R      V I+LVG K DL  
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS--KWIDDVRTERGSDVIIMLVGNKTDLAD 121
Query: 142 DRQFHLD 148
            RQ  ++
Sbjct: 122 KRQITIE 128

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL+ +  + F   ++ T+  +F    V ++G+ V L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLD 138
           +  +    YRGA   IL + +    ++ NI  K+W   +  +A     ++LVG K D
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSD 119

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG + DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL 120

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F   Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y P++ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  ++ PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y P++ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 82  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 126

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I   +   +    +  VP+VLVG K DL
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I   +   +    +  VP+VLVG K DL
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL+ +  + F   ++ T+  +F    V ++G+ V L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLD 138
           +  +    YRGA   IL + +    ++ NI  K+W   +  +A     ++LVG K D
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSD 119

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ +++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV---------DGRT--V 70
            IK + + D  VGKT  L  YT N F   ++ TV  +F    +V          G+   V
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
           +L LWDTAGQE +  L    +R A  F+L F L S+ S+ N+  + W+ +L+   Y  + 
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENP 142
Query: 129 PIVLVGTKLDLRKDRQFH 146
            IVL+G K DL   R+ +
Sbjct: 143 DIVLIGNKADLPDQREVN 160

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG+E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG    L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K V + +  VGKT LL  +T N F  D   T+   FS   VM+    V   +WDTAG E 
Sbjct: 12  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y  +    YRGA   +L F L    +Y  +  ++W+ EL  H   ++ ++LVG K DL +
Sbjct: 72  YRAITSAYYRGAVGALLVFDLTKHQTYAVV--ERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 142 DRQ 144
            R+
Sbjct: 130 ARE 132

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
             K + + +   GK+CLL  +    F  D   T+   F + ++ V G+ V L +WDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDL 139
           E +  +    YRGA   +L + + SR +Y  ++   W+ + R  A  ++ I+L G K DL
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDL 127
Query: 140 RKDRQ 144
             DR+
Sbjct: 128 DADRE 132

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + +VGKT L+  +  ++F   Y  T+  D  S  + ++ RTV L LWDTAGQE 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
           +  L P   R + V ++ + + +  S++  +  KW+ ++R      V I+LVG K DL  
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 142 DRQFHLD 148
            RQ  ++
Sbjct: 121 KRQVSIE 127

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAG 79
           K  K V   D AVGK+  L+    N F  +   T+  +F    ++VDG    L LWDTAG
Sbjct: 27  KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAG 86
Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLD 138
           QE +  +    +R AD  +L + +    S+ NI  ++WV  +   A  +VPI+LVG K D
Sbjct: 87  QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI--REWVDMIEDAAHETVPIMLVGNKAD 144
Query: 139 LR 140
           +R
Sbjct: 145 IR 146

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
             K + + +   GK+CLL  +    F  D   T+   F + ++ V G+ V L +WDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDL 139
           E +  +    YRGA   +L + + SR +Y  ++   W+ + R  A  ++ I+L G K DL
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDL 128
Query: 140 RKDRQ 144
             DR+
Sbjct: 129 DADRE 133

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ 80
            +K + + D  VGKT L+  Y    F   Y  T+  +F +  VMVD R V + +WDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAP----SVPIVLVGT 135
           E +  L    YRGAD  +L F + +  +++ +    W  E L   +P    + P V++G 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGN 125
Query: 136 KLDLRKDRQFHLDYPGAYTIS 156
           K+DL ++RQ       A+  S
Sbjct: 126 KIDL-ENRQVATKRAQAWCYS 145

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL  +T   F  D   T+   F   ++ V G+ + L +WDTAGQ  
Sbjct: 32  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           +  +    YRGA   ++ + +  R +Y ++S   W+ + R+   P+  I+L+G K DL  
Sbjct: 92  FRAVTRSYYRGAAGALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIILIGNKADLEA 149
Query: 142 DR 143
            R
Sbjct: 150 QR 151

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K V + +  VGKT LL  +T N F  D   T+   FS   VM+    V   +WDTAG E 
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL-RHYAPSVPIVLVGTKLDLRK 141
           Y  +    YRGA   +L F L    +Y  +  ++W+ EL  H   ++ ++LVG K DL +
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYAVV--ERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 142 DRQ 144
            R+
Sbjct: 145 ARE 147

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + +VGKT L+  +  ++F   Y  T+  D  S  + ++ RTV L LWDTAGQE 
Sbjct: 16  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
           +  L P   R + V ++ + + +  S+   S  KW+ ++R      V I+LVG K DL  
Sbjct: 76  FRSLIPSYIRDSTVAVVVYDITNTNSFHQTS--KWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 142 DRQ 144
            RQ
Sbjct: 134 KRQ 136

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 58/105 (55%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG E+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I   +   +    +  VP+VLVG K DL
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 138

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV------DGRT-----V 70
            IK + + D  VGKT  L  YT N F   ++ TV  +F    +V      DG +     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ N+  + W+ +L+   Y  + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENP 128
Query: 129 PIVLVGTKLDLRKDRQFH 146
            IVL+G K DL   R+ +
Sbjct: 129 DIVLIGNKADLPDQREVN 146

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGKT ++  +  +TF  +Y  T+  D  S  + +D   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYAPSVPIVLVGTKLDL 139
           +  L P   R +   I+ + + +R S+EN +  KW+ + L      V I LVG K DL
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTT--KWIQDILNERGKDVIIALVGNKTDL 118

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV------DGRT-----V 70
            IK + + D  VGKT  L  YT N F   ++ TV  +F    +V      DG +     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ N+  + W  +L+   Y  + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV--RNWXSQLQANAYCENP 128
Query: 129 PIVLVGTKLDLRKDRQFH 146
            IVL+G K DL   R+ +
Sbjct: 129 DIVLIGNKADLPDQREVN 146

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+ + +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV------DGRT-----V 70
            IK + + D  VGKT  L  YT N F   ++ TV  +F    +V      DG +     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ N+  + W  +L+   Y  + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV--RNWXSQLQANAYCENP 128
Query: 129 PIVLVGTKLDLRKDRQFH 146
            IVL+G K DL   R+ +
Sbjct: 129 DIVLIGNKADLPDQREVN 146

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV------DGRT-----V 70
            IK + + D  VGKT  L  YT N F   ++ TV  +F    +V      DG +     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSV 128
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ N+  + W+ +L+   Y  + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENP 128
Query: 129 PIVLVGTKLDLRKDRQFH 146
            IVL+G K DL   R+ +
Sbjct: 129 DIVLIGNKADLPDQREVN 146

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQE 81
           ++ + +    VGKT L+  +T +TF      TV  +F    V + G+ + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-VPIVLVGTKLDLR 140
            +N +    YR A   IL + +  + +++++   KW+  +  YA     ++LVG KLD  
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 141 KDRQ 144
            DR+
Sbjct: 145 TDRE 148

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 31  GAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLS 90
           G VGK+ L++ +   TF   Y+PTV D +   +  D     L + DT G   +  ++ LS
Sbjct: 12  GGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLS 71
Query: 91  YRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH 146
                 FIL +S+ SR S E +    + + E++    S+PI+LVG K D    R+  
Sbjct: 72  ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ 128

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG E+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-DGRTVNLGLWDTAGQED 82
           K + + + +VGKT  L  Y  ++F   +V TV  +F    +  + + + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y  +    YRGA  FIL + + +  S+  +  + W  +++ Y+  +  ++LVG K D+  
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAV--QDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 142 DR 143
           +R
Sbjct: 125 ER 126

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT-VNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YVPT+       V    R  +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +  PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+E+I + +   +    +  VP+VLVG K DL
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN-VMVDGRTVNLGLWDTAGQED 82
           K + + + +VGKT  L  Y  ++F   +V TV  +F    V    + + L +WDTAGQE 
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y  +    YRGA  F+L + + ++ S+  +  + W  +++ Y+  +  ++LVG K DL  
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAV--QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 142 DR 143
           +R
Sbjct: 142 ER 143

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           + F+  F++ +  S+ +I+  +   +    +  VP+VLVG K DL
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-----------DGRTV 70
            IK + + D  VGKT +L  YT   F + ++ TV  +F    +V            G+ +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSV-- 128
           +L LWDTAG E +  L    +R A  F+L F L +  S+ N+  + W+ +L+ +A S   
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV--RNWISQLQMHAYSENP 128
Query: 129 PIVLVGTKLDLRKDR 143
            IVL G K DL   R
Sbjct: 129 DIVLCGNKSDLEDQR 143

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YVPT+       V    R  +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + +VGKT L+  +  ++F   Y  T+  D  S  + ++ RT+ L LWDTAGQE 
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
           +  L P   R +   ++ + + +  S++  +  KW+ ++R      V I+LVG K DL  
Sbjct: 68  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 142 DRQFHLD 148
            RQ  ++
Sbjct: 126 KRQVSIE 132

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +    F  +Y PT+ D++   V VD +   L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
             +R L  +    F L +S+ ++ ++ ++   +           VP++LVG K DL  +R
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +    F   Y PT+ D++   V VD +   L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
             +R L  +    F L +S+ ++ ++ ++   +           VP++LVG K DL  +R
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER 124

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQ 80
             K + + +   GK+CLL  +    F  D   T+   F + ++ V G+ V L +WDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDL 139
           E +  +    YRGA   +L + + SR +Y  ++   W+ + R  A  ++ I+L G K DL
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDL 125
Query: 140 RKDRQ 144
             DR+
Sbjct: 126 DADRE 130

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGL-WDTAGQE 81
           +K   + D  VGK+ ++  +  + F  +  PT+  +F    +  G  ++  L WDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLR 140
            ++ L P+ YRG+   ++ + +  + S+  +  KKWV EL+ + P ++ + + G K DL 
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTL--KKWVKELKEHGPENIVMAIAGNKCDLS 141
Query: 141 KDRQFHLDYPGAYTIS 156
             R+  L     Y  S
Sbjct: 142 DIREVPLKDAKEYAES 157

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +    F   Y PT+ D++   V VD +   L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
             +R L  +    F L +S+ ++ ++ ++   +           VP++LVG K DL  +R
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + +VGKT L+  +  ++F   Y  T+  D  S  + ++ RTV L LWDTAG E 
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
           +  L P   R + V ++ + + +  S++  +  KW+ ++R      V I+LVG K DL  
Sbjct: 68  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 142 DRQFHLD 148
            RQ  ++
Sbjct: 126 KRQVSIE 132

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAG 79
           +  K + + D  VGKTCL   +    FP     T+  +F    + +DG  + + LWDTAG
Sbjct: 19  RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 78
Query: 80  QEDYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTK 136
           QE + + +    YR     +  + + +  S+ ++    W+ E + +  A  +P +LVG K
Sbjct: 79  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP--AWIEECKQHLLANDIPRILVGNK 136
Query: 137 LDLRKDRQFHLDYPGAYT 154
            DLR   Q   D    + 
Sbjct: 137 CDLRSAIQVPTDLAQKFA 154

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  YGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K V + + +VGKT L+  +  ++F   Y  T+  +F +  M ++ RTV L LWDTAG E 
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
           +  L P   R + V ++ + + +  S++  +  KW+ ++R      V I+LVG K DL  
Sbjct: 78  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 142 DRQFHLD 148
            RQ  ++
Sbjct: 136 KRQVSIE 142

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I +  + F +DY PT+ D+++    VDG    L + DTAGQE++  +R    R  
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 95  DVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRKDRQ 144
             F+L F++  R S+  +  K +   LR       P+VLVG K DL   RQ
Sbjct: 82  HGFLLVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT-VNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
           +K   + D  VGK+ ++  +  ++F  +  PT+  +F +  V          +WDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLR 140
            +  L P+ YRG+   I+ + +    ++  +  K WV ELR H  PS+ + + G K DL 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTL--KNWVRELRQHGPPSIVVAIAGNKCDLT 123
Query: 141 KDRQ 144
             R+
Sbjct: 124 DVRE 127

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAG 79
           +  K + + D  VGKTCL   +    FP     T+  +F    + +DG  + + LWDTAG
Sbjct: 28  RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 87
Query: 80  QEDYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTK 136
           QE + + +    YR     +  +   +  S+ ++    W+ E + +  A  +P +LVG K
Sbjct: 88  QERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP--AWIEECKQHLLANDIPRILVGNK 145
Query: 137 LDLRKDRQFHLD 148
            DLR   Q   D
Sbjct: 146 CDLRSAIQVPTD 157

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 121
Query: 143 RQ 144
           R+
Sbjct: 122 RK 123

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  FGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 133
Query: 143 RQ 144
           R+
Sbjct: 134 RK 135

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-DGRTVNLGLWDTAGQE 81
            K + + + +VGKT  L  Y  ++F   +V TV  +F    +  + + + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            Y  +    YRGA  FIL + + +  S+  +  + W  +++ Y+  +  ++LVG K D  
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAV--QDWSTQIKTYSWDNAQVLLVGNKCDXE 126
Query: 141 KDR 143
            +R
Sbjct: 127 DER 129

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQED 82
           K V + + +VGKT L+  +  ++F   Y  T+  +F +  M ++ RT+ L LWDTAG E 
Sbjct: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRK 141
           +  L P   R +   ++ + + +  S++  +  KW+ ++R      V I+LVG K DL  
Sbjct: 75  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 142 DRQFHLD 148
            RQ  ++
Sbjct: 133 KRQVSIE 139

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQ 80
             K V + D  VGK+ LL  +T + F  +   T+   F+   + V+ + +   +WDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E Y  +    YRGA   ++ + +    SYEN +   W+ ELR  A  +V + L+G K DL
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCN--HWLTELRENADDNVAVGLIGNKSDL 127
Query: 140 RKDRQFHLDYPGAYTISTE 158
              R    D    + +  +
Sbjct: 128 AHLRAVPTDEAKNFAMENQ 146

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +    VGK+ L + +    F   Y PT+ D++   V VD +   L + DTAG E +
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
             +R L  +    F L +S+ ++ ++ ++   +           VP++LVG K DL  +R
Sbjct: 67  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER 126

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L + +   TF   Y PT+ D +   + VD     L + DTAG E +  +R L  +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 95  DVFILAFSLISRPSYENIS-KKKWVPELRHYAPSVPIVLVGTKLDL 139
             FIL +SL+++ S+++I   +  +  ++ Y   VP++LVG K+DL
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDL 120

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
           +K   + D  VGK+ ++  +  ++F  +  PT+  +F +  V          +WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLR 140
            +  L P+ YRG+   I+ + +    ++  +  K WV ELR H  PS+ + + G K DL 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTL--KNWVRELRQHGPPSIVVAIAGNKCDLT 124
Query: 141 KDRQ 144
             R+
Sbjct: 125 DVRE 128

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  L    Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  FGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT-VNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAG E 
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 73
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 74  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 130
Query: 143 RQ 144
           R+
Sbjct: 131 RK 132

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT-VNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAG E 
Sbjct: 8   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 67
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 68  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 124
Query: 143 RQ 144
           R+
Sbjct: 125 RK 126

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+       V    R  +   +WDTAG E 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 128
Query: 143 RQ 144
           R+
Sbjct: 129 RK 130

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQED 82
           K V V DG  GKT  +  +        YV T+       V    R  +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+ KD
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI-KD 133
Query: 143 RQ 144
           R+
Sbjct: 134 RK 135

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 59/110 (53%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I +    F  DY PT+ D++  +  +D +   L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
           D F++ +S+  + S+E++ +   +        S P++LV  K+DL   R+
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 59/110 (53%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I +    F  DY PT+ D++  +  +D +   L + DTAGQE+++ +R    R  
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
           D F++ +S+  + S+E++ +   +        S P++LV  K+DL   R+
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 135

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   Y+ T+  +    +   +   +   +WDTAG E 
Sbjct: 7   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+++ 
Sbjct: 67  FGGLRDGYYINAQCAIIMFDVTSRITYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 143 R 143
           +
Sbjct: 125 K 125

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   Y+ T+  +    +   +   +   +WDTAG E 
Sbjct: 6   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+++ 
Sbjct: 66  FGGLRDGYYINAQCAIIMFDVTSRITYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 143 R 143
           +
Sbjct: 124 K 124

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L++ +   TF   Y+PT+ D +   +  D     L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 95  DVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAY 153
             FIL FS+ S+ S E +    K + +++     +P++LVG K D   + Q  +D   A 
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD---ETQREVDTREAQ 137
Query: 154 TISTE 158
            ++ E
Sbjct: 138 AVAQE 142

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I +    F  +Y PT+ D++  +  +D +   L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD 148
           D F++ +S+  + S+E++ +   +        S P++LV  K+DL   R+   D
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           ++ K V +    VGKT L   +    F   Y PTV + +S  V +     +L L DTAGQ
Sbjct: 23  RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 81  EDYNRLRPLSY-RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           ++Y+ L P S+  G   ++L +S+ S  S++ I          H    VP+VLVG K DL
Sbjct: 83  DEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
Query: 140 RKDRQ 144
             +R+
Sbjct: 142 SPERE 146

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   Y+ T+  +    +   +   +   +WDTAG E 
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D+++ 
Sbjct: 74  FGGLRDGYYINAQCAIIMFDVTSRITYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 143 R 143
           +
Sbjct: 132 K 132

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 35  KTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA 94
           K+ L I +    F  +Y PT+ D++  +  +D +   L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 95  DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLD 148
           D F++ +S+  + S+E++ +   +        S P++LV  K+DL   R+   D
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 31  GAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLS 90
             VGK+ L++ +    F  +Y PT+   +     +D   V++ + DTAGQED  + R   
Sbjct: 37  AGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGH 95
Query: 91  YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
            R  + F+L + +  R S+E +   K + +      +V ++LVG K DL   RQ
Sbjct: 96  MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ 149

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD-NFSANVMVD-GRTVNLGLWDTAGQE 81
           K   + DG VGKT  +       F  +Y  TV   N     + D G  +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRH-YAPSVPIVLVGTKLDLR 140
               L+ + Y GA   IL F + SR + +N++  +WV E +       PIV+   K+D+ 
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLA--RWVKEFQAVVGNEAPIVVCANKIDI- 129
Query: 141 KDRQ 144
           K+RQ
Sbjct: 130 KNRQ 133

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 32  AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
           +VGK+ L I +    F   Y PT+ + F+  + V+G+  +L L DTAGQ++Y+ + P +Y
Sbjct: 16  SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY 74
Query: 92  R-GADVFILAFSLISRPSYENISKKKWVPELRHYAPSV--PIVLVGTKLDLRKDR 143
               + +IL +S+ S  S+E I  K    +L      V  PI+LVG K DL  +R
Sbjct: 75  SIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 32  AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
           +VGK+ L I +    F   Y PT+ + F+  + V+G+  +L L DTAGQ++Y+ + P +Y
Sbjct: 16  SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY 74
Query: 92  RGADV--FILAFSLISRPSYENISKKKWVPELRHYAPSV--PIVLVGTKLDLRKDR 143
              D+  +IL +S+ S  S+E I  K    +L      V  PI+LVG K DL  +R
Sbjct: 75  -SIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 32  AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
           +VGK+ L I +    F   Y PT+ + F+  + V+G+  +L L DTAGQ++Y+ + P +Y
Sbjct: 11  SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY 69
Query: 92  RGADV--FILAFSLISRPSYENISKKKWVPELRHYAPSV--PIVLVGTKLDLRKDR 143
              D+  +IL +S+ S  S+E I  K    +L      V  PI+LVG K DL  +R
Sbjct: 70  -SIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 122

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 32  AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
           +VGK+ L I +    F     PT+ + F+  + V+G+  +L L DTAGQ++Y+ + P +Y
Sbjct: 14  SVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY 72
Query: 92  RGADV--FILAFSLISRPSYENISKKKWVPELRHYAPSV--PIVLVGTKLDLRKDR 143
              D+  +IL +S+ S  S+E I  K    +L      V  PI+LVG K DL  +R
Sbjct: 73  -SIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 125

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGR-TVNLGLWDTAGQ 80
           +K V + DGA GKT L   +   TF   Y  T+  D F   + + G   V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKW---VPELRHYAPSVPIV-LVGTK 136
               ++      GA   +L + + +  S+EN+  + W   V ++   + + P+V LVG K
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL--EDWYTVVKKVSEESETQPLVALVGNK 124
Query: 137 LDLRKDR 143
           +DL   R
Sbjct: 125 IDLEHMR 131

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYVPTVFDNFSANVMVDGRTVN---LGLWD 76
           + + V + +  VGK+ L   + G  ++  +D      D +   +MVDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 77  TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
             G+ ++  L     +  D +++ +S+  R S+E  S+ +           +PI+LVG K
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 137 LDLRKDRQFHLDYPGAYTI 155
            DL + R+  +    A  +
Sbjct: 124 SDLVRXREVSVSEGRAXAV 142

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYVPTVFDNFSANVMVDGRTVN---LGLWD 76
           + + V + +  VGK+ L   + G  ++  +D      D +   +MVDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 77  TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
             G+ ++  L     +  D +++ +S+  R S+E  S+ +           +PI+LVG K
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 137 LDLRKDRQFHLDYPGAYTI 155
            DL + R+  +    A  +
Sbjct: 124 SDLVRXREVSVSEGRAXAV 142

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT--AGQE 81
           + V + D  VGKT L   + G      +     D +   + VDG    L + DT  A + 
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
           D +  +    +G   +++ +S+  R S+E+ S+ +      H A  VPI+LVG K DL +
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 142 DRQFHLDYPGAYTI 155
            R+  ++   A  +
Sbjct: 126 CREVSVEEGRACAV 139

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 70  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP 129
           +   +WDTAGQE Y  + PL YRGA   I+ F + +  + +    K WV +L+  + +  
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLD--RAKTWVNQLK-ISSNYI 149
Query: 130 IVLVGTKLDLRKDRQFHLD 148
           I+LV  K+D  K   F +D
Sbjct: 150 IILVANKIDKNK---FQVD 165

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYVPTVFDNFSANVMVDGRTVN---LGLWD 76
           + + V + +  VGK+ L   + G  ++  +D      D +   +MVDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 77  TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
             G+ ++  L     +  D +++ +S+  R S+E  S+ +           +PI+LVG K
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 137 LDLRKDRQFHLDYPGAYTI 155
            DL + R+  +    A  +
Sbjct: 124 SDLVRCREVSVSEGRACAV 142

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTG--NTFPTDYVPTVFDNFSANVMVDGRTVN---LGLWD 76
           + + V + +  VGK+ L   + G  ++  +D      D +   +MVDG +     L +W+
Sbjct: 37  YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 77  TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
             G+ ++  L     +  D +++ +S+  R S+E  S+ +           +PI+LVG K
Sbjct: 97  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 137 LDLRKDRQFHLDYPGAYTI 155
            DL + R+  +    A  +
Sbjct: 155 SDLVRCREVSVSEGRACAV 173

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 22  FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQ 80
             K + V +  VGK+ L  ++ G    + + P    D +   +MVD   V L ++D   Q
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 81  EDYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKL 137
            D    LR    +  D F++ FS+  R S+  + +   +  LR   P   +P++LVG K 
Sbjct: 83  GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPET--LLRLRAGRPHHDLPVILVGNKS 140
Query: 138 DLRKDRQFHLD 148
           DL + R+  L+
Sbjct: 141 DLARSREVSLE 151

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF---DNFSANVMVDGRTVNLGLWDTAGQ 80
           K + V +  VGK+ L  ++ G     D+   +    D +   +MVD   V L ++D   Q
Sbjct: 4   KVMLVGESGVGKSTLAGTFGG--LQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 81  EDYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS--VPIVLVGTKL 137
            D    L+    +  D F++ FS+  R S+  + +   +  LR   P   +P++LVG K 
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET--LLRLRAGRPHHDLPVILVGNKS 119
Query: 138 DLRKDRQFHLD 148
           DL + R+  L+
Sbjct: 120 DLARSREVSLE 130

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDY-VPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           K + + +  VGK+ L  ++ G      + +    D +   +MVD   V L ++D   Q D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 83  YNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDL 139
               L+    +  D F++ FS+  R S+  + +   +  LR   P   +P++LVG K DL
Sbjct: 74  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET--LLRLRAGRPHHDLPVILVGNKSDL 131
Query: 140 RKDRQFHLD 148
            + R+  L+
Sbjct: 132 ARSREVSLE 140

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68  RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS 127
           R + L +WD AG+E++    P  +       LA   +S+   E  + K W+  ++  A S
Sbjct: 52  RDLVLNVWDFAGREEFYSTHP-HFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASS 110
Query: 128 VPIVLVGTKLDLRKDRQ 144
            P++LVGT LD+  ++Q
Sbjct: 111 SPVILVGTHLDVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68  RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS 127
           R + L +WD AG+E++    P  +       LA   +S+   E  + K W+  ++  A S
Sbjct: 54  RDLVLNVWDFAGREEFYSTHP-HFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASS 112
Query: 128 VPIVLVGTKLDLRKDRQ 144
            P++LVGT LD+  ++Q
Sbjct: 113 SPVILVGTHLDVSDEKQ 129

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 32  AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
            VGK+ L   + G              +  +++VDG   +L ++D   Q+    L     
Sbjct: 17  GVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM 75
Query: 92  RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPG 151
              D +++ +S+  + S+E  S+ +           VPI+LVG K DL + R+  +D   
Sbjct: 76  AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 135
Query: 152 AYTI 155
           A  +
Sbjct: 136 ACAV 139

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 32  AVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY 91
            VGK+ L   + G              +  +++VDG   +L ++D   Q+    L     
Sbjct: 17  GVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM 75
Query: 92  RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPG 151
              D +++ +S+  + S+E  S+ +           VPI+LVG K DL + R+  +D   
Sbjct: 76  AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 135
Query: 152 AYTI 155
           A  +
Sbjct: 136 ACAV 139

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 46/98 (46%)
Query: 58  NFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKW 117
            +  +++VDG   +L ++D   Q+    L        D +++ +S+  + S+E  S+ + 
Sbjct: 37  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 118 VPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYTI 155
                     VPI+LVG K DL + R+  +D   A  +
Sbjct: 97  QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV 134

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 29  RDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLR 87
           R GA GK+ L + +    F ++Y P + D +S+   VD + V+L + DTA  +   N  R
Sbjct: 29  RRGA-GKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCER 87
Query: 88  PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ 144
            L++  A + + +          +   +      +    S+P +L+G KLD+ + RQ
Sbjct: 88  YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ 144

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 24  KCVTVRDGAVGKTCLLISYT--GNTFPTDYVPTV-FDNFSANVMVDGRTVN--LGLWDTA 78
           K   V +  VGK+ L+  +T  G+ F  DY  T   +   A V +   TV+  L L DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS----VPIVLVG 134
           G + Y       + G    IL F + S  S+E  S K W   L+   P     +  VLV 
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFE--SCKAWFELLKSARPDRERPLRAVLVA 139
Query: 135 TKLDLRKDR-QFHLD 148
            K DL   R Q  LD
Sbjct: 140 NKTDLPPQRHQVRLD 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-82
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-82
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-82
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-79
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	6e-79
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-78
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-77
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-77
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	9e-77
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-76
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-75
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-73
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	9e-73
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-60
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	9e-40
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	9e-40
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-39
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-39
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	6e-39
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-39
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-38
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-38
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-38
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-37
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-37
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-37
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-37
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-37
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-37
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	6e-37
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	9e-37
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-36
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-36
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	6e-36
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-35
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-35
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-35
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	7e-35
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-34
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-34
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-34
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-33
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-33
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-33
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-33
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-33
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-33
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-33
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-33
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	9e-33
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-32
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-32
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-32
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-32
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-32
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-32
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-32
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-32
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-32
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-32
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-32
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-32
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-32
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-32
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-32
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	6e-32
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	7e-32
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	8e-32
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	9e-32
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-31
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-31
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	8e-31
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-30
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-30
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-30
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-30
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	5e-30
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-30
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	8e-30
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	9e-30
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-29
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	4e-27
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	8e-27
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-23
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-08
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-08
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-06
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-04

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  241 bits (616), Expect = 1e-82
 Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 1/143 (0%)

Query: 2   TSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA 61
                S +++         K +K V V DGAVGKTCLL++++    PT YVPTVF+NFS 
Sbjct: 3   AMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62

Query: 62  NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL 121
            +        L LWDTAGQE+Y+RLRPLSY  +DV +L F++ +R S++NI   KW PE+
Sbjct: 63  VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNI-STKWEPEI 121

Query: 122 RHYAPSVPIVLVGTKLDLRKDRQ 144
           +HY  +   VLVG K+DLRKD  
Sbjct: 122 KHYIDTAKTVLVGLKVDLRKDGS 144

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  241 bits (616), Expect = 2e-82
 Identities = 103/145 (71%), Positives = 121/145 (83%), Gaps = 3/145 (2%)

Query: 15  TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGL 74
           +  + +KFIKCVTV DGAVGKTC+LI YT N FPTDY+PTVFDNFSANV VDG+ VNLGL
Sbjct: 2   SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGL 61

Query: 75  WDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVG 134
           WDTAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ SYEN+  KKW+PELR +AP+VPIVLVG
Sbjct: 62  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENV-LKKWMPELRRFAPNVPIVLVG 120

Query: 135 TKLDLRKDRQFHLDYPGAYTISTEQ 159
           TKLDLR D+ +  D      I++ Q
Sbjct: 121 TKLDLRDDKGYLAD--HTNVITSTQ 143

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  238 bits (609), Expect = 6e-82
 Identities = 117/142 (82%), Positives = 130/142 (91%), Gaps = 1/142 (0%)

Query: 18  TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDT 77
           +A++FIKCVTV DGAVGKTCLLISYT NTFPTDYVPTVFDNFSANV+V+G TVNLGLWDT
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 63

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AGQEDYNRLRPLSYRGADVFILAFSLIS+ SYEN+  KKW+PEL+HYAP VPIVLVGTKL
Sbjct: 64  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-SKKWIPELKHYAPGVPIVLVGTKL 122

Query: 138 DLRKDRQFHLDYPGAYTISTEQ 159
           DLR D+QF +D+PGA  I+T Q
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQ 144

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  232 bits (593), Expect = 5e-79
 Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 3/152 (1%)

Query: 10  SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT 69
           S +        + +K V V DG  GKT LL+ +    FP  Y PTVF+ +  N+ V G+ 
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKP 81

Query: 70  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP 129
           V+L +WDTAGQ+DY+RLRPL Y  A V +L F + S  S++NI   +W PE+ H+   VP
Sbjct: 82  VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI-FNRWYPEVNHFCKKVP 140

Query: 130 IVLVGTKLDLRKDRQF--HLDYPGAYTISTEQ 159
           I++VG K DLRKD+     L   G   ++  +
Sbjct: 141 IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  231 bits (591), Expect = 6e-79
 Identities = 73/152 (48%), Positives = 100/152 (65%), Gaps = 3/152 (1%)

Query: 10  SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT 69
                      + +KCV V DGAVGKT L++SYT N +PT+Y+PT FDNFSA V VDGR 
Sbjct: 8   GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRP 67

Query: 70  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP 129
           V L L DTAGQ+++++LRPL Y   D+F+L FS++S  S++N+  +KWVPE+R + P  P
Sbjct: 68  VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNV-SEKWVPEIRCHCPKAP 126

Query: 130 IVLVGTKLDLRKDRQ--FHLDYPGAYTISTEQ 159
           I+LVGT+ DLR+D +    LD      +  E 
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  230 bits (587), Expect = 3e-78
 Identities = 73/157 (46%), Positives = 97/157 (61%), Gaps = 3/157 (1%)

Query: 5   TASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM 64
           ++     +      +    K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ 
Sbjct: 8   SSGVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIE 67

Query: 65  VDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY 124
           VDG+ V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S ENI  +KWVPE++H+
Sbjct: 68  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENI-PEKWVPEVKHF 126

Query: 125 APSVPIVLVGTKLDLRKDRQF--HLDYPGAYTISTEQ 159
            P+VPI+LV  K DLR D      L       + T+ 
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 163

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  228 bits (582), Expect = 1e-77
 Identities = 76/156 (48%), Positives = 107/156 (68%), Gaps = 3/156 (1%)

Query: 6   ASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV 65
           +     S+         +KCV V DGAVGKTCLL+SY  + FP +YVPTVFD+++ +V V
Sbjct: 2   SPGAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTV 61

Query: 66  DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA 125
            G+   LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++  S++N+ K++WVPEL+ YA
Sbjct: 62  GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNV-KEEWVPELKEYA 120

Query: 126 PSVPIVLVGTKLDLRKDRQF--HLDYPGAYTISTEQ 159
           P+VP +L+GT++DLR D +    L+      I  EQ
Sbjct: 121 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  228 bits (583), Expect = 1e-77
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 3/153 (1%)

Query: 9   LSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR 68
           +   +          K V V D   GKT LL  +  + FP +YVPTVF+N++A+  +D +
Sbjct: 15  VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQ 74

Query: 69  TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSV 128
            + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + +++  KKW  E++ + P+ 
Sbjct: 75  RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV-LKKWKGEIQEFCPNT 133

Query: 129 PIVLVGTKLDLRKDRQF--HLDYPGAYTISTEQ 159
            ++LVG K DLR D      L       +S +Q
Sbjct: 134 KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 166

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  226 bits (577), Expect = 9e-77
 Identities = 90/139 (64%), Positives = 107/139 (76%), Gaps = 3/139 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR D
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLRDD 149

Query: 143 RQF--HLDYPGAYTISTEQ 159
           +     L       I+  Q
Sbjct: 150 KDTIEKLKEKKLTPITYPQ 168

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  225 bits (574), Expect = 3e-76
 Identities = 73/139 (52%), Positives = 95/139 (68%), Gaps = 3/139 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V V DGA GKTCLLI ++ + FP  YVPTVF+N+ A++ VDG+ V L LWDTAGQED
Sbjct: 26  KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR+D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENI-PEKWTPEVKHFCPNVPIILVGNKKDLRQD 144

Query: 143 RQF--HLDYPGAYTISTEQ 159
                 L       + +E+
Sbjct: 145 EHTRRELAKMKQEPVRSEE 163

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  221 bits (565), Expect = 3e-75
 Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 3/139 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V V D   GKT LL  +  + FP +YVPTVF+N++A+  +D + + L LWDT+G   
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+ +RPLSY  +D  ++ F +    + +++  KKW  E++ + P+  ++LVG K DLR D
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSV-LKKWKGEIQEFCPNTKMLLVGCKSDLRTD 126

Query: 143 RQF--HLDYPGAYTISTEQ 159
                 L       +S +Q
Sbjct: 127 VSTLVELSNHRQTPVSYDQ 145

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  215 bits (550), Expect = 7e-73
 Identities = 89/143 (62%), Positives = 108/143 (75%), Gaps = 3/143 (2%)

Query: 19  ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTA 78
           + + IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD 138
           GQEDY+RLRPLSY   DV ++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLD
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLD 120

Query: 139 LRKDRQF--HLDYPGAYTISTEQ 159
           LR D+     L       I+  Q
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQ 143

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  216 bits (552), Expect = 9e-73
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 3/159 (1%)

Query: 3   STTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN 62
           S+    L              K V V D   GKT +L     + +P  YVPTVF+N++A 
Sbjct: 8   SSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC 67

Query: 63  VMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR 122
           +  + + V L LWDT+G   Y+ +RPL Y  +D  +L F +    + ++   KKW  E+ 
Sbjct: 68  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSA-LKKWRTEIL 126

Query: 123 HYAPSVPIVLVGTKLDLRKDRQF--HLDYPGAYTISTEQ 159
            Y PS  ++L+G K DLR D      L +     IS EQ
Sbjct: 127 DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQ 165

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  189 bits (481), Expect = 1e-60
 Identities = 88/152 (57%), Positives = 109/152 (71%), Gaps = 3/152 (1%)

Query: 10  SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT 69
            ++      A + IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ 
Sbjct: 143 KTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP 202

Query: 70  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP 129
           VNLGLWDTAG EDY+RLRPLSY   DVF++ FSL+S  S+ ++ + KW PE+RH+ P+ P
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHV-RAKWYPEVRHHCPNTP 261

Query: 130 IVLVGTKLDLRKDRQF--HLDYPGAYTISTEQ 159
           I+LVGTKLDLR D+     L       I+  Q
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  131 bits (331), Expect = 9e-40
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 20  TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
           +   +      G VGK+ L++ +   TF   Y+PTV D +   +  D     L + DT G
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTK 136
              +  ++ LS      FIL +S+ SR S E +  K    ++        S+PI+LVG K
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEEL--KPIYEQICEIKGDVESIPIMLVGNK 118

Query: 137 LDLRKDRQ 144
            D    R+
Sbjct: 119 CDESPSRE 126

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  131 bits (333), Expect = 9e-40
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 4   TTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV 63
             +S   +         ++ K V +    VGKT L   +    F   Y PTV + +S  V
Sbjct: 6   HHSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIV 65

Query: 64  MVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LR 122
            +     +L L DTAGQ++Y+ L      G   ++L +S+ S  S++ I  +    +   
Sbjct: 66  TLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI--ESLYQKLHE 123

Query: 123 HYA-PSVPIVLVGTKLDLRKDRQ 144
            +    VP+VLVG K DL  +R+
Sbjct: 124 GHGKTRVPVVLVGNKADLSPERE 146

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  130 bits (329), Expect = 3e-39
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 6   ASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV 65
             ++++S   +     + K V V DG VGK+ L I +    F  DY PT+ D++  +  +
Sbjct: 3   LGSMATSAVPSENLPTY-KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI 61

Query: 66  DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA 125
           D +   L + DTAGQE+++ +R    R  D F++ +S+  + S+E++   ++   +    
Sbjct: 62  DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV--DRFHQLILRVK 119

Query: 126 PS--VPIVLVGTKLDLRKDRQ 144
                P++LV  K+DL   R+
Sbjct: 120 DRESFPMILVANKVDLMHLRK 140

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  129 bits (328), Expect = 4e-39
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 20  TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
           +K  K   +   +VGK+ L I +    F   Y PT+ + F+  + V+G+  +L L DTAG
Sbjct: 4   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 63

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE-LRHYA-PSVPIVLVGTKL 137
           Q++Y+          + +IL +S+ S  S+E I  K    + L       +PI+LVG K 
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI--KVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 138 DLRKDRQ 144
           DL  +R 
Sbjct: 122 DLHMERV 128

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  129 bits (327), Expect = 6e-39
 Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 7   SALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVD 66
             +S     +  +    K + V  G VGK+ L + +  + F  DY PT  D++   V++D
Sbjct: 3   PGISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD 62

Query: 67  GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY-- 124
           G  V + + DTAGQEDY  +R   +R  + F+  FS+    S+       +  ++     
Sbjct: 63  GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT--ADFREQILRVKE 120

Query: 125 APSVPIVLVGTKLDLRKDRQ 144
             +VP +LVG K DL   RQ
Sbjct: 121 DENVPFLLVGNKSDLEDKRQ 140

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  130 bits (328), Expect = 7e-39
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 10  SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT 69
           +++      +    K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  
Sbjct: 2   AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE 61

Query: 70  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PS 127
           V + + DTAGQEDY  +R   +R  + F+  FS+    S+       +  ++       +
Sbjct: 62  VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT--ADFREQILRVKEDEN 119

Query: 128 VPIVLVGTKLDLRKDRQ 144
           VP +LVG K DL   RQ
Sbjct: 120 VPFLLVGNKSDLEDKRQ 136

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  127 bits (323), Expect = 1e-38
 Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +   TF   Y PT+ D +   + VD     L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141
             +R L  +    FIL +SL+++ S+++I  K    ++        VP++LVG K+DL  
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI--KPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 142 DRQ 144
           +R+
Sbjct: 123 ERE 125

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  126 bits (320), Expect = 4e-38
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141
             +R   +R  + F+  FS+    S+       +  ++       +VP +LVG K DL  
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAAT--ADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 142 DRQ 144
            RQ
Sbjct: 124 KRQ 126

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  127 bits (322), Expect = 4e-38
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           + V    G VGK+ L++ +   TF   Y+PT+ D +   +  D     L + DT G   +
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF 69

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             ++ LS      FIL FS+ S+ S E +    K + +++     +P++LVG K D    
Sbjct: 70  PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE-TQ 128

Query: 143 RQ 144
           R+
Sbjct: 129 RE 130

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  125 bits (317), Expect = 1e-37
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V +  G VGK+ L + +    F   Y PT+ D++   V VD +   L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141
             +R L  +    F L +S+ ++ ++ ++  +    ++        VP++LVG K DL  
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL--QDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 142 DRQ 144
           +R 
Sbjct: 123 ERV 125

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  126 bits (319), Expect = 1e-37
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 5/145 (3%)

Query: 2   TSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA 61
           +S       +    +   +  +K        VGK+ L++ +    F  +Y PT+   +  
Sbjct: 8   SSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH 67

Query: 62  NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPEL 121
              +D   V++ + DTAGQED    R    R  + F+L + +  R S+E +        L
Sbjct: 68  QATIDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV--LPLKNIL 124

Query: 122 RHY--APSVPIVLVGTKLDLRKDRQ 144
                  +V ++LVG K DL   RQ
Sbjct: 125 DEIKKPKNVTLILVGNKADLDHSRQ 149

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  126 bits (318), Expect = 1e-37
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V  G VGK+ L I +  + F +DY PT+ D+++    VDG    L + DTAGQE++
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK 141
             +R    R    F+L F++  R S+  +   K   ++         P+VLVG K DL  
Sbjct: 71  GAMREQYMRAGHGFLLVFAINDRQSFNEV--GKLFTQILRVKDRDDFPVVLVGNKADLES 128

Query: 142 DRQ 144
            RQ
Sbjct: 129 QRQ 131

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  125 bits (315), Expect = 4e-37
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 10  SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT 69
           S            +    +     GK+ L + +    F ++Y P + D +S+   VD + 
Sbjct: 9   SGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQP 68

Query: 70  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA---- 125
           V+L + DTA  +   R        A  F++ +S+ SR S+++     ++  L  +A    
Sbjct: 69  VHLRVMDTADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS--SSYLELLALHAKETQ 125

Query: 126 PSVPIVLVGTKLDLRKDRQ 144
            S+P +L+G KLD+ + RQ
Sbjct: 126 RSIPALLLGNKLDMAQYRQ 144

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  124 bits (313), Expect = 5e-37
 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V  G VGK+ L I    N F  +  PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK 141
           + +R    R  + F+  F++ +  S+E+I   ++  +++       VP+VLVG K DL  
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI--HQYREQIKRVKDSDDVPMVLVGNKSDL-A 121

Query: 142 DRQ 144
            R 
Sbjct: 122 ART 124

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  123 bits (312), Expect = 6e-37
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 5/123 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + +    VGK+ L   + G              +  +++VDG   +L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS--VPIVLVGTKLDLRK 141
             L        D +++ +S+  + S+E     +   +LR    +  VPI+LVG K DL +
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA--SELRVQLRRARQTDDVPIILVGNKSDLVR 120

Query: 142 DRQ 144
            R+
Sbjct: 121 SRE 123

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  125 bits (316), Expect = 6e-37
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V V DG  GKT  +  +    F   YV T+  +        +   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  LR   Y  A   I+ F + SR +Y+N+    W  +L     ++PIVL G K+D++  
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV--PNWHRDLVRVCENIPIVLCGNKVDIKDR 134

Query: 143 RQ 144
           + 
Sbjct: 135 KV 136

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  123 bits (311), Expect = 9e-37
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
           IK V V +GAVGK+ ++  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
           +++ +    YRGA   +L FS   R S+E I    W  ++      +P  LV  K+DL  
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI--SSWREKVVAEVGDIPTALVQNKIDLLD 123

Query: 142 DRQ 144
           D  
Sbjct: 124 DSC 126

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  123 bits (312), Expect = 1e-36
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V  G VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAGQE+Y
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 82

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS--VPIVLVGTKLDLRK 141
           + +R    R  + F+  F++ +  S+ +I    +  +++    S  VP+VLVG K DL  
Sbjct: 83  SAMRDQYMRTGEGFLCVFAINNSKSFADI--NLYREQIKRVKDSDDVPMVLVGNKCDL-P 139

Query: 142 DRQ 144
            R 
Sbjct: 140 TRT 142

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  122 bits (309), Expect = 3e-36
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 19  ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTA 78
            +   K V V    VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTA
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60

Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS--VPIVLVGTK 136
           GQE+Y+ +R    R  + F+  F++ +  S+E+I    +  +++    S  VP+VLVG K
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI--HHYREQIKRVKDSEDVPMVLVGNK 118

Query: 137 LDLRKDRQ 144
            DL   R 
Sbjct: 119 CDL-PSRT 125

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  122 bits (308), Expect = 6e-36
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQED 82
           K + V +  VGK+ L  ++ G    + + P    D +   +MVD   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 83  Y-NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSVPIVLVGTKLDL 139
               LR    +  D F++ FS+  R S+  +   + +  LR       +P++LVG K DL
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV--PETLLRLRAGRPHHDLPVILVGNKSDL 142

Query: 140 RKDRQ 144
            + R+
Sbjct: 143 ARSRE 147

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  120 bits (304), Expect = 1e-35
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K + V +  VGK+ L  ++ G      +     ++     +MVD   V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 83  YN-RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSVPIVLVGTKLDL 139
               L+    +  D F++ FS+  R S+  +   + +  LR       +P++LVG K DL
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV--PETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 140 RKDRQ 144
            + R+
Sbjct: 122 ARSRE 126

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  120 bits (303), Expect = 2e-35
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-- 81
           + V + D  VGKT L   + G      +     D +   + VDG    L + DT   E  
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSVPIVLVGTKLDL 139
           D +  +    +G   +++ +S+  R S+E+    +   +LR  H A  VPI+LVG K DL
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESA--SELRIQLRRTHQADHVPIILVGNKADL 123

Query: 140 RKDRQ 144
            + R+
Sbjct: 124 ARCRE 128

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  121 bits (306), Expect = 2e-35
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPT--VFDNFSANVMVDGRTVNLGLWDTAGQE 81
           K   + DG VGKT  +       F  +Y  T    ++    +   G  +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
               L+ + Y GA   IL F + SR + +N+   +WV E +       PIV+   K+D++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNL--ARWVKEFQAVVGNEAPIVVCANKIDIK 130

Query: 141 KDRQ 144
             ++
Sbjct: 131 NRQK 134

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  119 bits (301), Expect = 7e-35
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 4   TTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNFSA 61
              S  + S  ++ +   + + V + +  VGK+ L   + G   +  +D      D +  
Sbjct: 19  YFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER 78

Query: 62  NVMVDGRTVNLGL---WDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWV 118
            +MVDG +  + L   W+  G+ ++  L     +  D +++ +S+  R S+E     +  
Sbjct: 79  TLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA--SELR 134

Query: 119 PELR--HYAPSVPIVLVGTKLDLRKDRQ 144
            +LR       +PI+LVG K DL + R+
Sbjct: 135 IQLRRARQTEDIPIILVGNKSDLVRCRE 162

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  118 bits (298), Expect = 1e-34
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 10/137 (7%)

Query: 10  SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRT 69
           SS           +K   V + + GK+ L+  Y   T+  +  P     F   ++VDG++
Sbjct: 8   SSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQS 66

Query: 70  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS-- 127
             L + D  G  +            D  +  FSL    S++ +    +   L  +  +  
Sbjct: 67  YLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTV--YNYFLRLCSFRNASE 119

Query: 128 VPIVLVGTKLDLRKDRQ 144
           VP+VLVGT+  +     
Sbjct: 120 VPMVLVGTQDAISAANP 136

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  117 bits (295), Expect = 4e-34
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 4/145 (2%)

Query: 2   TSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFS 60
           +S      SS      +A + +K   + D  VGK+ ++  +  + F  +  PT+     +
Sbjct: 3   SSHHHHHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT 62

Query: 61  ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE 120
             V          +WDTAGQE ++ L P+ YRG+   ++ + +  + S+  +  KKWV E
Sbjct: 63  KTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL--KKWVKE 120

Query: 121 LRHYA-PSVPIVLVGTKLDLRKDRQ 144
           L+ +   ++ + + G K DL   R+
Sbjct: 121 LKEHGPENIVMAIAGNKCDLSDIRE 145

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  116 bits (294), Expect = 4e-34
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGK+ LL+ +  NTF   Y+ T+  D     V ++G  V L +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
            +  +    YRG    I+ + + S  S+ N+  K+W+ E+      V  +LVG K D  +
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV--KRWLHEINQNCDDVCRILVGNKNDDPE 127

Query: 142 DRQ 144
            + 
Sbjct: 128 RKV 130

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  116 bits (292), Expect = 1e-33
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 1   MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS 60
           M S+      SS      +    K + + + +VGKT  L  Y  ++F   +V TV  +F 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60

Query: 61  A-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVP 119
              V    + + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+  +  + W  
Sbjct: 61  VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV--QDWAT 118

Query: 120 ELRHYA-PSVPIVLVGTKLDLRKDRQ 144
           +++ Y+  +  ++LVG K DL  +R 
Sbjct: 119 QIKTYSWDNAQVILVGNKCDLEDERV 144

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  115 bits (291), Expect = 1e-33
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
            K V + +G VGKT L++ Y  N F   ++ T+     +  + + G+ VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            ++ L P+ YR ++  IL + +    S++ +  K WV ELR      + + +VG K+DL 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLE 124

Query: 141 KDRQ 144
           K+R 
Sbjct: 125 KERH 128

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  116 bits (293), Expect = 1e-33
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 6   ASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVM 64
              +S+         KF K V + + +VGKT L+  +  ++F   Y  T+  D  S  + 
Sbjct: 1   GPGMSTGGDFGNPLRKF-KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 59

Query: 65  VDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY 124
           ++ RTV L LWDTAG E +  L P   R + V ++ + + +  S++     KW+ ++R  
Sbjct: 60  LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT--TKWIDDVRTE 117

Query: 125 A-PSVPIVLVGTKLDLRKDRQ 144
               V I+LVG K DL   RQ
Sbjct: 118 RGSDVIIMLVGNKTDLADKRQ 138

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  115 bits (290), Expect = 2e-33
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 1   MTSTTASALSSSTTTTTTATKF---IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-F 56
           M S+      SS      +  +    K V + +  VGKT LL  +T N F  D   T+  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV 60

Query: 57  DNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKK 116
           +  +  VM+    V   +WDTAG E Y  +    YRGA   +L F L    +Y  +  ++
Sbjct: 61  EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV--ER 118

Query: 117 WVPELRHYA-PSVPIVLVGTKLDLRKDRQ 144
           W+ EL  +A  ++ ++LVG K DL + R+
Sbjct: 119 WLKELYDHAEATIVVMLVGNKSDLSQARE 147

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  114 bits (289), Expect = 2e-33
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+     +  V +D  TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y+ L P+ YRGA   I+ + + +  S+     K WV EL+  A P++ I L G K DL  
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA--KNWVKELQRQASPNIVIALSGNKADLAN 125

Query: 142 DRQ 144
            R 
Sbjct: 126 KRA 128

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  115 bits (291), Expect = 2e-33
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 8/150 (5%)

Query: 1   MTSTTASALSSSTTTTTTATK----FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV- 55
           M S+      SS      + +      K V + +  VGKTCL+  +T   FP     T+ 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 60

Query: 56  FDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKK 115
            D     V ++G  V L +WDTAGQE +  +    YR A+  IL + +    S+  +   
Sbjct: 61  VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL--P 118

Query: 116 KWVPELRHYA-PSVPIVLVGTKLDLRKDRQ 144
           +W+ E+  YA   V  VLVG K+DL + R+
Sbjct: 119 EWLREIEQYASNKVITVLVGNKIDLAERRE 148

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  114 bits (288), Expect = 3e-33
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 12  STTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTV 70
           S       +   K V + D   GK+ L++ +  + F      T+    FS  + V+  TV
Sbjct: 2   SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61

Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVP 129
              +WDTAGQE Y+ L P+ YRGA   I+ F + ++ S+E    KKWV EL+    P++ 
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA--KKWVQELQAQGNPNMV 119

Query: 130 IVLVGTKLDLRKDRQ 144
           + L G K DL   R+
Sbjct: 120 MALAGNKSDLLDARK 134

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  114 bits (287), Expect = 5e-33
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           ++   + D   GK+ L+  +   ++      T  + +   ++VDG+T  + + + AG  D
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP----SVPIVLVGT--K 136
                      AD  I  FSL    S++ +   +   +L          + + LVGT  +
Sbjct: 67  A-----KFSGWADAVIFVFSLEDENSFQAV--SRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 137 LDLRKDRQ 144
           +     R 
Sbjct: 120 ISASSPRV 127

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  113 bits (286), Expect = 9e-33
 Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGK+CLL+ +T   F   +  T+  +  +  V +DG+ + L +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRGA   +L + +  R ++ ++    W+ + R ++  ++ I+L+G K DL 
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL--TSWLEDARQHSSSNMVIMLIGNKSDLE 139

Query: 141 KDRQ 144
             R 
Sbjct: 140 SRRD 143

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  113 bits (285), Expect = 1e-32
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 12  STTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTV 70
           S+       +  K V + + +VGKT L+  +  ++F   Y  T+  D  S  + ++ RTV
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 71  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVP 129
            L LWDTAGQE +  L P   R + V ++ + + +  S+      KW+ ++R      V 
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT--SKWIDDVRTERGSDVI 121

Query: 130 IVLVGTKLDLRKDRQ 144
           I+LVG K DL   RQ
Sbjct: 122 IMLVGNKTDLSDKRQ 136

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  113 bits (286), Expect = 1e-32
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 1   MTSTTASALSSSTTTTTTATKF---IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-F 56
           M S+      SS      +       K + +     GK+CLL  +  N F  D   T+  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV 60

Query: 57  DNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKK 116
           +  S  V V G+TV L +WDTAGQE +  +    YRGA   +L + + SR +Y ++    
Sbjct: 61  EFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSL--AA 118

Query: 117 WVPELRHYA-PSVPIVLVGTKLDLRKDRQ 144
           W+ + R  A P++ ++L G K DL  +R+
Sbjct: 119 WLTDARTLASPNIVVILCGNKKDLDPERE 147

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  113 bits (285), Expect = 1e-32
 Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 1   MTSTTASALSSSTTTTTTATK------FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPT 54
           M S+      SS      + K        K V   D AVGK+  L+    N F  +   T
Sbjct: 1   MGSSHHHHHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISAT 60

Query: 55  V-FDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENIS 113
           +  D     ++VDG    L LWDTAGQE +  +    +R AD  +L + +    S+ NI 
Sbjct: 61  LGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI- 119

Query: 114 KKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            ++WV  +   A  +VPI+LVG K D+R
Sbjct: 120 -REWVDMIEDAAHETVPIMLVGNKADIR 146

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  113 bits (284), Expect = 2e-32
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 6   ASALSSSTTTTTTATK-----FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS 60
                 S+       +       K + + + +VGKT  L  Y  +TF   +V TV  +F 
Sbjct: 2   HHHHHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK 61

Query: 61  A-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVP 119
              V    + V L +WDTAGQE Y  +    YRGA  FIL + + +  S+  +  + W  
Sbjct: 62  VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV--QDWAT 119

Query: 120 ELRHYA-PSVPIVLVGTKLDLRKDRQ 144
           +++ Y+  +  ++LVG K D+ ++R 
Sbjct: 120 QIKTYSWDNAQVILVGNKCDMEEERV 145

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  113 bits (284), Expect = 2e-32
 Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGK+CLL+ +  +T+   Y+ T+  D     + +DG+T+ L +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL 
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDLT 151

Query: 141 KDRQ 144
             + 
Sbjct: 152 TKKV 155

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  112 bits (283), Expect = 2e-32
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + D  VGK+ LL  +T N F  +   T+  +  + ++ VDG+T+   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y  +    YRGA   +L + +    +YEN+  ++W+ ELR +A  ++ I+LVG K DLR 
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDLRH 148

Query: 142 DRQ 144
            R 
Sbjct: 149 LRA 151

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  113 bits (284), Expect = 2e-32
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
           +K + + D  VGKT L+  Y    F   Y  T+  D  +  VMVD R V + +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTK 136
            +  L    YRGAD  +L F + +  +++ +    W  E    A      + P V++G K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTL--DSWRDEFLIQASPRDPENFPFVVLGNK 126

Query: 137 LDLRKDR 143
           +DL   +
Sbjct: 127 IDLENRQ 133

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  112 bits (282), Expect = 2e-32
 Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 9/127 (7%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K + + DG VGK+ L+  Y  N F T    T+  +  + ++ VDG  V + +WDTAGQE 
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKL 137
           +  LR   YRG+D  +L FS+    S++N+    W  E  +YA      S P V++G K+
Sbjct: 69  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNL--SNWKKEFIYYADVKEPESFPFVILGNKI 126

Query: 138 DLRKDRQ 144
           D+  +RQ
Sbjct: 127 DI-SERQ 132

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  112 bits (283), Expect = 3e-32
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 1   MTSTTASALSSSTTTTTTATK----FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF 56
           M S+      SS      + +     ++ + +    VGKT L+  +T +TF      TV 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG 60

Query: 57  DNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKK 115
            +F    V + G+ + L +WDTAGQE +N +    YR A   IL + +  + +++++   
Sbjct: 61  VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL--P 118

Query: 116 KWVPELRHYA-PSVPIVLVGTKLDLRKDRQ 144
           KW+  +  YA     ++LVG KLD   DR+
Sbjct: 119 KWMKMIDKYASEDAELLLVGNKLDCETDRE 148

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  113 bits (284), Expect = 3e-32
 Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
            K V V D +VGKTC++  +    F      T+  D     + + G+ V L +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YR A+  ILA+ +  R S+ ++    W+ ++R YA  ++  +L+G K DL 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSV--PHWIEDVRKYAGSNIVQLLIGNKSDLS 147

Query: 141 KDRQ 144
           + R+
Sbjct: 148 ELRE 151

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  112 bits (282), Expect = 3e-32
 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL  +T   F  D   T+  +  +  + V G+ + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           +  +    YRGA   ++ + +  R +Y ++    W+ + R+   P+  I+L+G K DL  
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL--SSWLTDARNLTNPNTVIILIGNKADLEA 134

Query: 142 DRQ 144
            R 
Sbjct: 135 QRD 137

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  111 bits (281), Expect = 4e-32
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K + + +   GK+CLL  +    F  D   T+  +  S  + V G+ V L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           +  +    YRGA   +L + + SR +Y  +    W+ + R  A  ++ I+L G K DL  
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNAL--TNWLTDARMLASQNIVIILCGNKKDLDA 129

Query: 142 DRQ 144
           DR+
Sbjct: 130 DRE 132

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  111 bits (281), Expect = 5e-32
 Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGKTC+L  ++ + F + ++ T+  +F    + +DG+ + L +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRGA   +L + + +  S++NI  + W+  +  +A   V  +++G K D+ 
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVN 126

Query: 141 KDRQ 144
             RQ
Sbjct: 127 DKRQ 130

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  112 bits (283), Expect = 5e-32
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + D  VGK+ LL  +T N F  D   T+  +  +  + ++G+ +   +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y  +    YRGA   ++ + +    SYEN     W+ ELR  A  +V + L+G K DL  
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC--NHWLSELRENADDNVAVGLIGNKSDLAH 132

Query: 142 DRQ 144
            R 
Sbjct: 133 LRA 135

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  112 bits (282), Expect = 6e-32
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE 81
            K + + + +VGKT  L  Y  ++F   +V TV  +F    +  + + + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            Y  +    YRGA  FIL + + +  S+  +  + W  +++ Y+  +  ++LVG K D+ 
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV--QDWSTQIKTYSWDNAQVLLVGNKCDME 126

Query: 141 KDRQ 144
            +R 
Sbjct: 127 DERV 130

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  111 bits (281), Expect = 6e-32
 Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 4/123 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + D  VGK+ LL  +T N F  +   T+  +  + ++ VDG+T+   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y R+    YRGA   +L + +    +YEN+  ++W+ ELR +A  ++ I+LVG K DLR 
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDLRH 124

Query: 142 DRQ 144
            R 
Sbjct: 125 LRA 127

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  111 bits (281), Expect = 7e-32
 Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGK+CLL+ +  +T+   Y+ T+  D     + +DG+T+ L +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRGA   I+ + +  + S+ N+  K+W+ E+  YA  +V  +LVG K DL 
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDLT 134

Query: 141 KDRQ 144
             + 
Sbjct: 135 TKKV 138

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  112 bits (281), Expect = 8e-32
 Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE 81
            K + + +  VGK+CLL+ ++ +T+  DY+ T+  +F    V +DG+TV L +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRG+   I+ + +  + S+  +  K W+ E+  YA  +V  +LVG K DL+
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGV--KMWLQEIDRYATSTVLKLLVGNKCDLK 126

Query: 141 KDRQ 144
             R 
Sbjct: 127 DKRV 130

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  111 bits (279), Expect = 9e-32
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 24  KCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNFSANVMVDGRTVNLGL---WDTA 78
           + V + +  VGK+ L   + G   +  +D      D +   +MVDG +  + L   W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR--HYAPSVPIVLVGTK 136
           G+ ++  L     +  D +++ +S+  R S+E     +   +LR       +PI+LVG K
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA--SELRIQLRRARQTEDIPIILVGNK 123

Query: 137 LDLRKDRQ 144
            DL + R+
Sbjct: 124 SDLVRXRE 131

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  110 bits (278), Expect = 1e-31
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 17  TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLW 75
           +   +  K   + D  VGK+ ++  +  ++F  +  PT+     +  V          +W
Sbjct: 2   SALREL-KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60

Query: 76  DTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVG 134
           DTAG E +  L P+ YRG+   I+ + +    ++  +  K WV ELR +  PS+ + + G
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL--KNWVRELRQHGPPSIVVAIAG 118

Query: 135 TKLDLRKDRQ 144
            K DL   R+
Sbjct: 119 NKCDLTDVRE 128

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  109 bits (276), Expect = 3e-31
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 9/128 (7%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDG-RTVNLGLWDTAGQ 80
           +K + + D  VGKT L+  Y  + +   Y  T+  D  +  V VDG +   + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGT 135
           E +  L    YRGAD  +L + + +  S+ENI  K W  E   +A      + P V++G 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENI--KSWRDEFLVHANVNSPETFPFVILGN 126

Query: 136 KLDLRKDR 143
           K+D  + +
Sbjct: 127 KIDAEESK 134

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  108 bits (273), Expect = 8e-31
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGKTCL   +    FP     T+  D     V +DG  + + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 82  DYNR-LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS--VPIVLVGTKLD 138
            + + +    YR     +  + + +  S+ ++    W+ E + +  +  +P +LVG K D
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL--PAWIEECKQHLLANDIPRILVGNKCD 138

Query: 139 LRKDRQ 144
           LR   Q
Sbjct: 139 LRSAIQ 144

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  107 bits (269), Expect = 2e-30
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE 81
           +K + + D  VGK+CLL+ +  + F   ++ T+  +F    V ++G+ V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRGA   IL + +    ++ NI  K+W   +  +A     ++LVG K D+ 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSDME 121

Query: 141 K 141
            
Sbjct: 122 T 122

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  107 bits (270), Expect = 3e-30
 Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQE 81
           +K + + +  VGK+ LL+ +T +TF  +   T+  D     + VDG    L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDL 139
            +  L P  YRGA   IL + +  R ++  +    W+ EL  Y     +  +LVG K+D 
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL--DNWLNELETYCTRNDIVNMLVGNKIDK 133

Query: 140 RKDRQ 144
            ++R+
Sbjct: 134 -ENRE 137

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  107 bits (270), Expect = 3e-30
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE 81
           +K + + D  VGK+CLL+ +  + F   ++ T+  +F    V ++G+ V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR 140
            +  +    YRGA   IL + +    ++ NI  K+W   +  +A     ++LVG K D+ 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI--KQWFKTVNEHANDEAQLLLVGNKSDME 138

Query: 141 K 141
            
Sbjct: 139 T 139

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  107 bits (269), Expect = 4e-30
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 24  KCVTVRDGAVGKTCLLISYT--GNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLW--DTA 78
           K   V +  VGK+ L+  +T  G+ F  DY  T   +   A V +   TV++ L+  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81

Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVG 134
           G + Y       + G    IL F + S  S+E+   K W   L+         +  VLV 
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC--KAWFELLKSARPDRERPLRAVLVA 139

Query: 135 TKLDLRKDRQ 144
            K DL   R 
Sbjct: 140 NKTDLPPQRH 149

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  106 bits (267), Expect = 5e-30
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPTV-FDNFSANVMVDGRTVNLGLWDTAGQ 80
            K + V D  VGKTCLL+ +    F    ++ TV  D  +  + VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDL 139
           E +  +    YR A   +L + + ++ S++NI  + W+ E+  YA   V ++L+G K+D 
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI--QAWLTEIHEYAQHDVALMLLGNKVDS 128

Query: 140 RKDRQ 144
             +R 
Sbjct: 129 AHERV 133

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  106 bits (266), Expect = 7e-30
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPT--DYVPTVFDNFSA-NVMVDG---RTVNLGLWD 76
           +K + V +   GKT LL                TV  +     + +     R + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 77  TAGQEDYNRLRPLSYRGADVFILAFSLISRPS-YENISKKKWVPELRHYAPSVPIVLVGT 135
            AG+E++    P       +++  + L    +  + +  K W+  ++  A S P++LVGT
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAM--KPWLFNIKARASSSPVILVGT 120

Query: 136 KLDLRKDRQ 144
            LD+  ++Q
Sbjct: 121 HLDVSDEKQ 129

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  106 bits (266), Expect = 8e-30
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGR-TVNLGLWDTAGQ 80
           +K V + DGA GKT L   +   TF   Y  T+  D F   + + G   V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTK 136
               ++      GA   +L + + +  S+EN+  + W   ++  +        + LVG K
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL--EDWYTVVKKVSEESETQPLVALVGNK 124

Query: 137 LDLRKDRQ 144
           +DL   R 
Sbjct: 125 IDLEHMRT 132

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  106 bits (267), Expect = 9e-30
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-----------FDNFSANVMVDGRTVN 71
           IK + + D  VGKT +L  YT   F + ++ TV             N     +  G+ ++
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 72  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPS--VP 129
           L LWDTAG E +  L    +R A  F+L F L +  S+ N+  + W+ +L+ +A S    
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV--RNWISQLQMHAYSENPD 129

Query: 130 IVLVGTKLDLRKDRQ 144
           IVL G K DL   R 
Sbjct: 130 IVLCGNKSDLEDQRA 144

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  106 bits (267), Expect = 1e-29
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 1   MTSTTASALSSSTTTTTTATKF---IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-F 56
           M S+      SS      +  +   IK + + D  VGKT  L  YT N F   ++ TV  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 60

Query: 57  DNFSANVMVDGR----------TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR 106
           D     V+ + +           V+L LWDTAGQE +  L    +R A  F+L F L S+
Sbjct: 61  DFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ 120

Query: 107 PSYENISKKKWVPELRHYAPS--VPIVLVGTKLDLRKDRQ 144
            S+ N+  + W+ +L+  A      IVL+G K DL   R+
Sbjct: 121 QSFLNV--RNWMSQLQANAYCENPDIVLIGNKADLPDQRE 158

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 98.7 bits (246), Expect = 4e-27
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 20  TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTA 78
           T   K V + + AVGK+ +++ +  N F  +  PT+     +  V ++  TV   +WDTA
Sbjct: 2   TSI-KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 79  GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKL 137
           GQE +  L P  YR A   ++ + +    S+     + WV EL   A   + I LVG K+
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA--RHWVKELHEQASKDIIIALVGNKI 118

Query: 138 DLRKD 142
           D  ++
Sbjct: 119 DXLQE 123

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  103 bits (259), Expect = 8e-27
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 14/144 (9%)

Query: 10  SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV---- 65
           + S        + IK   + DG  GKT LL    G TF      T   N           
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 66  -----DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPE 120
                + +      WD  GQE  +         + V++L        +  N     W+  
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK--HYWLRH 143

Query: 121 LRHYAPSVPIVLVGTKLDLRKDRQ 144
           +  Y    P+++V  K+D      
Sbjct: 144 IEKYGGKSPVIVVMNKIDENPSYN 167

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 91.0 bits (226), Expect = 1e-23
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 41/156 (26%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLG--------- 73
           K V + + +VGK+ +++  T +TF  +   T+     +  V ++   +            
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68

Query: 74  ----------------------------LWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 105
                                       +WDTAGQE Y  + PL YRGA   I+ F + +
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128

Query: 106 RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
             + +    K WV +L+    +  I+LV  K+D  K
Sbjct: 129 SNTLDRA--KTWVNQLKIS-SNYIIILVANKIDKNK 161

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 32  AVGKTCLLISYTGNTFPTDYV---PTVFDNFSANVMVDGRTVNLGLWDTAGQEDY----- 83
             GK+ +      N    D      T+  +   + +     + L LWD  GQ+ +     
Sbjct: 13  GSGKSSMRSIIFSNYSAFDTRRLGATI--DVEHSHLRFLGNMTLNLWDCGGQDVFMENYF 70

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD 142
            + +   ++   V I  F + S    ++I    K + +LR Y+P   I ++  K+DL + 
Sbjct: 71  TKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 12/110 (10%)

Query: 45  NTFPTDYVPTVFDNFSANVMVD----GRTVNLGLWDTAGQEDY--NRLRPLSYRGADVFI 98
           +     +  T    +              +     D  G E     +  P      D F+
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167

Query: 99  LAF--SLISRPSYENISKKKWVPELRHYAPS--VPIVLVGTKLDLRKDRQ 144
           L    S     ++++    K+V  L +       PIV+V TK D   +R 
Sbjct: 168 LGIDVSRGMNRNFDDQ--LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY 215

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 37/142 (26%), Positives = 50/142 (35%), Gaps = 26/142 (18%)

Query: 31  GAVGKTCLL--------ISYTG--NTFPTDYVPTVFDNFSANVM--VDGRTVNLGLWDTA 78
           G  GKT  L            G   +  T+   T+F +F    +  V G      L+   
Sbjct: 23  GLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82

Query: 79  GQEDYNRLRPLSYRGADVFI-LAFSLISRPSYENISKKKWVPELRHYAPS---VPIVLVG 134
           GQ  YN  R L  RG D  + +A S  +R      S +     L  Y  +   VPIV+  
Sbjct: 83  GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142

Query: 135 TKLDLRKDRQFHLDYPGAYTIS 156
            K DL          P A  + 
Sbjct: 143 NKRDL----------PDALPVE 154

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 8/114 (7%)

Query: 32  AVGKTCLLISYTGNTFPTD---YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL-- 86
             GK+ +         P +      T       + + +   VN  +WD  GQ D+     
Sbjct: 30  RSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPGQMDFFDPTF 87

Query: 87  -RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
              + +RG    I                   V +     P +   +   K+D 
Sbjct: 88  DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG 141

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 30 DGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANV-MVDGRTVNLGLWDTAGQEDYNRLR 87
            + GKT  +       F  D +PTV F     N+  +    V + LWD  GQ    R R
Sbjct: 31 QYS-GKTTFVNVIASGQFNEDMIPTVGF-----NMRKITKGNVTIKLWDIGGQP---RFR 81

Query: 88 PL---SYRGADVFI 98
           +     RG    +
Sbjct: 82 SMWERYCRGVSAIV 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.96
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.96
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.96
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.94
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.94
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.94
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.94
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.94
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.94
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.89
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.93
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.93
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.93
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.93
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.93
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.92
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.92
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.92
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.92
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.92
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.91
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.91
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.9
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.88
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.88
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.88
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.87
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.87
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.87
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.87
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.86
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.86
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.84
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.83
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.83
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.82
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.82
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.82
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.81
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.8
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.8
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.8
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.79
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.78
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.78
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.78
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.78
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.77
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.75
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.75
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.75
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.74
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.73
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.73
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.72
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.71
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.71
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.71
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.7
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.7
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.7
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.7
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.69
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.69
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.69
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.68
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.68
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.67
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.66
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.66
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.66
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.66
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.66
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.65
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.65
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.65
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.65
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.64
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.64
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.63
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.62
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.62
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.62
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.62
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.62
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.61
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.61
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.61
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.6
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.6
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.59
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.59
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.58
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.56
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.55
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.55
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.55
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.53
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.53
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.52
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.47
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.42
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.38
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.37
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.34
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.31
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.23
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.23
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.21
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.14
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.14
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.13
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.08
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.01
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.01
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.99
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.95
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.8
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.7
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.7
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.69
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.67
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.66
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.61
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.54
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.46
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.45
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.37
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.31
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.24
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.12
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.07
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.96
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.83
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.8
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.69
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.65
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.63
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.55
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.54
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.5
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.5
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.39
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.37
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.36
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.36
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.36
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.35
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.35
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.33
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.28
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.23
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.21
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.21
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.21
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.21
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.17
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.16
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.15
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.14
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.14
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.14
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.14
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.13
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.12
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.12
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.12
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.12
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.11
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.11
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.09
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.08
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.08
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.08
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.07
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.07
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.05
1g6h_A	257	High-affinity branched-chain amino acid transport	97.05
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.04
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.04
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.03
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.03
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.03
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.02
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.02
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.0
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.99
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.99
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.99
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.99
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.99
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.98
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.98
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.98
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.98
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.97
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.96
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.96
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.96
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.95
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.95
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.95
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.94
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.94
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.93
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.93
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.93
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.93
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.92
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.92
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.92
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.92
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.91
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.91
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.9
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.89
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.88
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.88
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.87
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.87
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.85
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.85
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.84
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.83
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.83
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.83
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.82
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.82
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.82
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.82
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.82
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.8
1via_A	175	Shikimate kinase; structural genomics, transferase	96.8
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.78
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.78
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.78
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.78
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.77
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.77
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.75
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.75
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.75
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.74
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.73
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.72
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.72
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.72
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.71
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.71
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.71
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.7
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.7
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.69
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.69
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.66
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.66
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.65
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.65
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.65
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.64
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.64
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.62
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.62
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.62
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.61
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.61
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.61
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.6
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.59
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.59
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.59
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.59
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.58
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.58
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.57
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.56
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.56
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.55
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.55
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.53
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.52
2og2_A	359	Putative signal recognition particle receptor; nuc	96.51
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.49
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.49
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.49
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.49
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.48
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.48
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.48
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.47
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.46
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.46
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.45
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.45
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.43
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.41
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.4
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.39
3bos_A	242	Putative DNA replication factor; P-loop containing	96.38
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.38
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.37
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.36
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.35
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.34
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.34
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.33
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.33
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.32
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.32
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.3
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.28
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.28
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.25
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.21
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.19
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.19
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.16
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.15
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.15
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.12
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.12
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.1
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.06
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.04
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.04
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.03
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.03
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.02
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.02
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.01
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.99
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.99
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.98
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.97
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.97
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.95
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.92
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.91
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.9
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.89
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.86
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.86
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.86
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.85
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.83
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.82
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.82
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.81
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.8
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.79
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.78
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.78
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.76
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.74
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.73
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.73
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.72
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.72
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.68
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.64
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.64
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.62
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.62
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.61
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.6
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.59
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.57
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.57
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.57
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.52
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.51
2fna_A	357	Conserved hypothetical protein; structural genomic	95.51
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.49
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.49
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.47
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.46
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.45
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.45
3co5_A	143	Putative two-component system transcriptional RES	95.45
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.41
2qgz_A	308	Helicase loader, putative primosome component; str	95.41
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.41
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.4
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.37
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.36
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.35
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.34
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.34
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.34
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.32
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.29
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.28
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.25
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.23
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.21
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.21
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.19
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.19
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.17
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.17
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.17

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.4e-35  Score=210.51  Aligned_cols=135  Identities=29%  Similarity=0.508  Sum_probs=113.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      +.+.+||+|||++|||||||++||+.+.|...|.+|.+..+ .+....++..+.++||||+|++.|..++..|+++++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            45779999999999999999999999999999999998666 55677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      ++|||++++++|..+.  .|+..+.... +++|++|||||+|+.+.|+|+.++++.||.
T Consensus        90 ilv~di~~~~Sf~~i~--~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~  146 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK  146 (216)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             EEEeecchhHHHHHHH--HHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH
Confidence            9999999999999998  8999887664 689999999999999999999998887763

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=6.1e-31  Score=185.64  Aligned_cols=142  Identities=25%  Similarity=0.337  Sum_probs=114.0

Q ss_pred             CCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccc
Q 044772           10 SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPL   89 (159)
Q Consensus        10 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   89 (159)
                      +.+.+........+||+++|++|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||++|++.+... ..
T Consensus         9 ~~~~~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~   87 (187)
T 3c5c_A            9 SGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ER   87 (187)
T ss_dssp             -----------CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HH
T ss_pred             chhhhHHhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HH
Confidence            33444555667889999999999999999999999999888899998887777778888999999999999988774 67


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ++.+++++++|||++++++|..+.  .|+..+....    .++|++||+||+|+.+.++++.++++.++
T Consensus        88 ~~~~~~~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  154 (187)
T 3c5c_A           88 YLNWAHAFLVVYSVDSRQSFDSSS--SYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA  154 (187)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHH--HHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH
Confidence            899999999999999999999998  8998888763    58999999999999988888877665543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=1.2e-30  Score=187.97  Aligned_cols=141  Identities=33%  Similarity=0.605  Sum_probs=116.8

Q ss_pred             CCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 044772           13 TTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR   92 (159)
Q Consensus        13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   92 (159)
                      ..........+||+|+|++|||||||+++|+++.+...+.+|.+..+...+.+++..+.+.+||++|++.+..++..+++
T Consensus        18 ~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   97 (214)
T 3q3j_B           18 GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS   97 (214)
T ss_dssp             ---------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             ccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence            34445666789999999999999999999999999988899998888777778888899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC------------ccccccCCCccc
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD------------RQFHLDYPGAYT  154 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------------r~v~~~~~~~~~  154 (159)
                      +++++|+|||++++++|..+.. .|+..+....+++|++||+||+|+.+.            |.++.++++.++
T Consensus        98 ~~d~~i~v~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (214)
T 3q3j_B           98 DSDAVLLCFDISRPETVDSALK-KWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA  170 (214)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHT-HHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             CCeEEEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH
Confidence            9999999999999999998433 999999998889999999999999864            677766655543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.97  E-value=4.7e-30  Score=180.96  Aligned_cols=151  Identities=28%  Similarity=0.526  Sum_probs=119.5

Q ss_pred             CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC
Q 044772            1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG   79 (159)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g   79 (159)
                      |+++.....++...........+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G   80 (189)
T 2gf9_A            1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG   80 (189)
T ss_dssp             -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence            56666666665666666677889999999999999999999999998877778777665 34566788889999999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++.+...+..++..++++|+|||++++.+|..+.  .|+..+.... .+.|++||+||+|+.+.+.+..++++.+
T Consensus        81 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  153 (189)
T 2gf9_A           81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQ--DWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL  153 (189)
T ss_dssp             CCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             cHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence            9999999999999999999999999999999988  8999888775 5899999999999988777766554443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.97  E-value=4.2e-30  Score=181.59  Aligned_cols=150  Identities=29%  Similarity=0.539  Sum_probs=115.9

Q ss_pred             CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC
Q 044772            1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG   79 (159)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g   79 (159)
                      |+++.+.++.... ........+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G   79 (191)
T 2a5j_A            1 MGSSHHHHHHSSG-LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG   79 (191)
T ss_dssp             ---------CCCC-CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTT
T ss_pred             CCccccccccccc-cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCC
Confidence            5555555444333 333446789999999999999999999999998877777776655 44677788889999999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++.+...+..++++++++|+|||++++.+|..+.  .|+..+.... .+.|++||+||+|+.+.+.+..++++.+
T Consensus        80 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  152 (191)
T 2a5j_A           80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLT--SWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF  152 (191)
T ss_dssp             GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH
Confidence            9999999999999999999999999999999988  8999888764 5899999999999988888776655544

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=3.4e-30  Score=184.62  Aligned_cols=123  Identities=37%  Similarity=0.745  Sum_probs=110.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      .....+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+...+..++.+++++
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            34678999999999999999999999999988888888887776777788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |+|||++++.+|..+.. .|+..+....++.|++||+||+|+.+
T Consensus       104 ilv~D~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~  146 (205)
T 1gwn_A          104 LICFDISRPETLDSVLK-KWKGEIQEFCPNTKMLLVGCKSDLRT  146 (205)
T ss_dssp             EEEEETTCHHHHHHHHH-THHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHHHCCCCCEEEEEechhhcc
Confidence            99999999999999843 89999988888999999999999975

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=7.3e-30  Score=180.65  Aligned_cols=138  Identities=49%  Similarity=0.832  Sum_probs=119.2

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772           14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG   93 (159)
Q Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   93 (159)
                      .........+||+++|++|||||||+++|.++.+...+.+|.+..+...+..++..+.+.+||++|++.+...+..++++
T Consensus        15 ~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   94 (194)
T 3reg_A           15 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYAD   94 (194)
T ss_dssp             ------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             ccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccC
Confidence            34445678899999999999999999999999998888999988888778889999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC--ccccccCCCc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD--RQFHLDYPGA  152 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~--r~v~~~~~~~  152 (159)
                      ++++|+|||++++.+|..+.. .|+..+....+++|++||+||+|+.+.  +.+..++++.
T Consensus        95 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  154 (194)
T 3reg_A           95 SDVVLLCFAVNNRTSFDNIST-KWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDD  154 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHH-THHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHH
T ss_pred             CcEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHH
Confidence            999999999999999999754 999999988889999999999999753  6666655443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=8.4e-30  Score=180.21  Aligned_cols=125  Identities=56%  Similarity=1.093  Sum_probs=113.5

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      ......+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+...+..++.++++
T Consensus        13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            44568899999999999999999999999998888899888777777778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +|+|||++++++|..+.. .|+..+....+++|++||+||+|+.+.
T Consensus        93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKE-EWVPELKEYAPNVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             EEEEEETTCHHHHHHHHH-THHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhccc
Confidence            999999999999998865 799999888789999999999999764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.97  E-value=1.7e-29  Score=176.54  Aligned_cols=134  Identities=30%  Similarity=0.426  Sum_probs=119.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ..+.+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            45789999999999999999999999999888899988888777888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++++|..+.  .|+..+....  .++|++||+||+|+.+.+.++.++++.++
T Consensus        83 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  138 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIK--VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA  138 (181)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred             EEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH
Confidence            999999999999998  8988887664  48999999999999988888877665543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=1.1e-29  Score=178.55  Aligned_cols=122  Identities=38%  Similarity=0.750  Sum_probs=110.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ....+||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++.+++++|
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            45679999999999999999999999999888889988877777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +|||++++.+|..+.. .|+..+....++.|++||+||+|+.+
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           84 ICFDISRPETLDSVLK-KWKGEIQEFCPNTKMLLVGCKSDLRT  125 (184)
T ss_dssp             EEEETTCHHHHHHHHH-THHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHHHCCCCCEEEEEEcchhhc
Confidence            9999999999999843 89999988878999999999999975

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=5e-30  Score=182.94  Aligned_cols=136  Identities=30%  Similarity=0.558  Sum_probs=109.8

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 044772           16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA   94 (159)
Q Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   94 (159)
                      .......+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++++
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            34556789999999999999999999999998888888877655 45677788889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +++|+|||++++.+|..+.  .|+..+.... .++|++||+||+|+.+.|.++.++++.+
T Consensus       103 d~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  160 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVP--HWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSL  160 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHH
Confidence            9999999999999999988  8999988776 6899999999999998888876655544

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.96  E-value=1.7e-29  Score=179.47  Aligned_cols=128  Identities=55%  Similarity=0.988  Sum_probs=103.7

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772           14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG   93 (159)
Q Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   93 (159)
                      .........+||+++|++|||||||+++|.++.+...+.+|.+..+...+..++..+.+.+||++|++.+...+..++.+
T Consensus        12 ~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   91 (201)
T 2q3h_A           12 RAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN   91 (201)
T ss_dssp             --------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTT
T ss_pred             ccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCC
Confidence            33445678899999999999999999999999988888888887777777888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++++|+|||++++.+|..+.. .|+..+....+++|++||+||+|+...
T Consensus        92 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           92 TDIFLLCFSVVSPSSFQNVSE-KWVPEIRCHCPKAPIILVGTQSDLRED  139 (201)
T ss_dssp             CSEEEEEEETTCHHHHHHHHH-THHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred             CcEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence            999999999999999999865 799999888789999999999999763

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.96  E-value=4.2e-29  Score=177.96  Aligned_cols=123  Identities=59%  Similarity=1.028  Sum_probs=112.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ....+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..+++++++++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            45779999999999999999999999999888888888877667778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +|||++++++|..+.. .|+..+....++.|++||+||+|+.+.
T Consensus       102 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~  144 (201)
T 2gco_A          102 MCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRQD  144 (201)
T ss_dssp             EEEETTCHHHHHHHHH-THHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence            9999999999999854 899998888788999999999999765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=1.4e-29  Score=177.27  Aligned_cols=134  Identities=30%  Similarity=0.486  Sum_probs=119.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      .....+||+++|++|||||||+++|.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++++++++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            45678999999999999999999999999988888998888877788899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++|||++++++|..+.  .|+..+....  .++|+++|+||+|+.+.+.++.++++.+
T Consensus        94 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~  149 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVD--RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM  149 (183)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHH
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHH
Confidence            9999999999999998  8888886643  5899999999999998888887766554

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.9e-29  Score=180.27  Aligned_cols=135  Identities=32%  Similarity=0.599  Sum_probs=117.8

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      ......+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            3456789999999999999999999999998888888877655 446778888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++|+|||++++.+|..+.  .|+..+.... .++|++||+||+|+.+.++++.++++.+
T Consensus       101 ~~i~v~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  157 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLP--EWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF  157 (201)
T ss_dssp             EEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            999999999999999988  8999888775 5799999999999988888876665544

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=8.7e-30  Score=178.30  Aligned_cols=135  Identities=30%  Similarity=0.551  Sum_probs=116.0

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      .......+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++..++
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            33445789999999999999999999999998888888888877777788888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++++|||++++++|..+.  .|+..+.....  ++|++||+||+|+.+.+.+..++.+.
T Consensus        92 ~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  148 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  148 (187)
T ss_dssp             EEEEEEETTCHHHHHHHH--HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence            999999999999999988  89888887654  89999999999998877776655443

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.96  E-value=1.7e-29  Score=178.01  Aligned_cols=135  Identities=21%  Similarity=0.308  Sum_probs=111.4

Q ss_pred             CCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 044772           12 STTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY   91 (159)
Q Consensus        12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   91 (159)
                      ..++.+...+.+||+++|++|||||||+++|+++.+...+.++ ...+...+.+++..+.+.+||++|++.+.     ++
T Consensus        10 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~   83 (184)
T 3ihw_A           10 GRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FA   83 (184)
T ss_dssp             ------CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HH
T ss_pred             CCCCCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----ee
Confidence            3444456678899999999999999999999999998888887 44556778889999999999999998776     77


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccc--cCccccccCCCccc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLR--KDRQFHLDYPGAYT  154 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~--~~r~v~~~~~~~~~  154 (159)
                      .+++++++|||++++.+|..+.  .|+..+....  .++|++||+||+|+.  ..+.++.++++.++
T Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~  148 (184)
T 3ihw_A           84 AWVDAVVFVFSLEDEISFQTVY--NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS  148 (184)
T ss_dssp             HHCSEEEEEEETTCHHHHHHHH--HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH
T ss_pred             cCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH
Confidence            8899999999999999999998  8999998775  589999999999994  56777766555443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.96  E-value=2.3e-29  Score=180.38  Aligned_cols=127  Identities=79%  Similarity=1.347  Sum_probs=113.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      .....+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+...+..++.+++++
T Consensus         5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             SCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             CcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            34577999999999999999999999999988888898887777777888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      |+|||++++++|..+.. .|+..+..+.++.|++||+||+|+.+.+.+
T Consensus        85 ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  131 (212)
T 2j0v_A           85 VLAFSLISKASYENVLK-KWMPELRRFAPNVPIVLVGTKLDLRDDKGY  131 (212)
T ss_dssp             EEEEETTCHHHHHHHHH-THHHHHHHHCTTCCEEEEEECHHHHTCHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeCHHhhhCccc
Confidence            99999999999998865 899999888789999999999999887764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=179.55  Aligned_cols=138  Identities=29%  Similarity=0.391  Sum_probs=112.5

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772           14 TTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG   93 (159)
Q Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   93 (159)
                      .+.++..+.+||+|+|++|||||||+++|.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++++
T Consensus        16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   95 (201)
T 3oes_A           16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIG   95 (201)
T ss_dssp             -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTT
T ss_pred             CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhc
Confidence            44456678899999999999999999999999998888888888776666677777889999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++++++|||++++.+|..+.  .|+..+....  .++|++||+||+|+...+.++.++++.+
T Consensus        96 ~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  155 (201)
T 3oes_A           96 VHGYVLVYSVTSLHSFQVIE--SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL  155 (201)
T ss_dssp             CCEEEEEEETTCHHHHHHHH--HHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH
Confidence            99999999999999999998  8999888764  4789999999999998888876655443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.96  E-value=9.9e-29  Score=172.06  Aligned_cols=132  Identities=30%  Similarity=0.550  Sum_probs=114.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++.+++++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            45789999999999999999999999998877777776655 45677888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++|||++++.+|..+.  .|+..+....++.|++||+||+|+.+.+.+..+++..
T Consensus        86 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  138 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVK--RWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYK  138 (181)
T ss_dssp             EEEEETTCHHHHHHHH--HHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHH
Confidence            9999999999999988  8999999888899999999999998888777554433

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=177.68  Aligned_cols=134  Identities=31%  Similarity=0.547  Sum_probs=118.4

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++..++++
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            44567999999999999999999999999888888888887777778888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCcc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++|||++++++|..+.  .|+..+.....  ++|++||+||+|+.+.++++.+++..+
T Consensus        90 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  145 (206)
T 2bov_A           90 LCVFSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR  145 (206)
T ss_dssp             EEEEETTCHHHHHHHH--HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHH
Confidence            9999999999999988  89998888764  899999999999988887776655443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.96  E-value=6.7e-29  Score=175.01  Aligned_cols=134  Identities=28%  Similarity=0.591  Sum_probs=114.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCccccc-ccccccccCCc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYN-RLRPLSYRGAD   95 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~   95 (159)
                      ...+.+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+. .++..++++++
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            445789999999999999999999999998877778777655 4566778888999999999999888 78889999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++|+|||++++.+|..+.  .|+..+....  .+.|++||+||+|+.+.++++.++++.+
T Consensus        96 ~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  153 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLP--AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF  153 (189)
T ss_dssp             EEEEEEETTCHHHHHTHH--HHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHH
Confidence            999999999999999988  8999888774  5899999999999988888776655443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.96  E-value=1.5e-28  Score=172.06  Aligned_cols=122  Identities=70%  Similarity=1.213  Sum_probs=111.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||+++|.++.+...+.++.+..+.....+++..+.+.+||++|++.+...+..++..++++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            35799999999999999999999999998888888887777777888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |||++++.+|..+.. .|+..+....++.|+++|+||+|+.+.
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           83 CFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDD  124 (186)
T ss_dssp             EEETTCHHHHHHHHH-THHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred             EEECCChhhHHHHHH-HHHHHHHHhCCCCCEEEEeEccccccc
Confidence            999999999998865 799998887778999999999999764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.96  E-value=6.7e-29  Score=178.68  Aligned_cols=124  Identities=48%  Similarity=0.928  Sum_probs=92.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ..+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+||++|++.+...+..++.++++++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            35679999999999999999999999998888888888777777788898899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +|||++++.+|..+.. .|+..+....+++|++||+||+|+...+
T Consensus       111 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~  154 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFN-RWYPEVNHFCKKVPIIVVGCKTDLRKDK  154 (214)
T ss_dssp             EEEETTCHHHHHHHHH-THHHHHHHHCSSCCEEEEEECGGGGSCH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhhhccc
Confidence            9999999999999865 8999998888899999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=6.4e-29  Score=175.75  Aligned_cols=142  Identities=27%  Similarity=0.519  Sum_probs=115.8

Q ss_pred             CCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCccccccccc
Q 044772           10 SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRP   88 (159)
Q Consensus        10 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   88 (159)
                      +++........+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+.
T Consensus        11 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   90 (192)
T 2fg5_A           11 SSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAP   90 (192)
T ss_dssp             ----------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTH
T ss_pred             ccccccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhH
Confidence            44455555667889999999999999999999999998877788877666 34566677888999999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      .+++.++++|+|||++++.+|..+.  .|+..+.... .++|+++|+||+|+.+.+.++.++.+.+
T Consensus        91 ~~~~~~d~iilV~d~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~  154 (192)
T 2fg5_A           91 MYYRGSAAAVIVYDITKQDSFYTLK--KWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEY  154 (192)
T ss_dssp             HHHTTCSEEEEEEETTCTHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             HhhccCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            9999999999999999999999997  8999888776 5899999999999988777776655544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=4.2e-29  Score=171.87  Aligned_cols=130  Identities=27%  Similarity=0.496  Sum_probs=114.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+++|++|||||||+++|.++.+...+.++.+..+.....+++..+.+.+||++|++.+...+..++.+++++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999988888888887777777788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCc
Q 044772          101 FSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ||++++.+|..+.  .|+..+...  ..+.|+++|+||+|+.+.+.++.++.+.
T Consensus        82 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (167)
T 1c1y_A           82 YSITAQSTFNDLQ--DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN  133 (167)
T ss_dssp             EETTCHHHHHTHH--HHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EECCCHHHHHHHH--HHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH
Confidence            9999999999988  888887765  3589999999999998888776655443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=3.9e-29  Score=175.00  Aligned_cols=133  Identities=28%  Similarity=0.602  Sum_probs=90.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            4679999999999999999999999888877788877665 346677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++.+|..+.  .|+..+.... .++|++||+||+|+.+.+.++.++++.++
T Consensus        86 ~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  140 (183)
T 2fu5_C           86 LVYDITNEKSFDNIR--NWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA  140 (183)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHH
Confidence            999999999999988  8999888764 58999999999999988888766655443

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.3e-29  Score=178.16  Aligned_cols=135  Identities=30%  Similarity=0.561  Sum_probs=109.3

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      .+....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.+++
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            3456789999999999999999999999988777777776554 456677888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++|+|||++++.+|..+.  .|+..+.... .+.|++||+||+|+.+.++++.++++.+
T Consensus       101 ~iilV~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~  157 (192)
T 2il1_A          101 GIILVYDITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF  157 (192)
T ss_dssp             EEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            999999999999999987  8998888776 4899999999999988888776554443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=9.5e-29  Score=171.87  Aligned_cols=134  Identities=30%  Similarity=0.605  Sum_probs=116.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++++
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            346789999999999999999999999998877788877655 4466778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|+|||++++.++..+.  .|+..+.... .+.|+++|+||+|+.+.+.++.++.+.+
T Consensus        91 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  146 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF  146 (179)
T ss_dssp             EEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            99999999999999988  8998888776 6899999999999988777766555443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=9.9e-29  Score=174.53  Aligned_cols=136  Identities=32%  Similarity=0.524  Sum_probs=116.5

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCC
Q 044772           16 TTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGA   94 (159)
Q Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   94 (159)
                      .......+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++.++
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (193)
T 2oil_A           19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA   98 (193)
T ss_dssp             -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34567789999999999999999999999998877777776655 44666788889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           95 DVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +++|+|||++++.+|..+.  .|+..+.... .+.|++||+||+|+...+.+..++++.+
T Consensus        99 d~vi~v~D~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  156 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVE--RWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMF  156 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHH--HHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHH
Confidence            9999999999999999888  8998887765 5899999999999988777766555443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.96  E-value=1.3e-28  Score=169.64  Aligned_cols=131  Identities=35%  Similarity=0.576  Sum_probs=114.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999999998888888877555 456677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      +|||++++.++..+.  .|+..+.....+.|+++|+||+|+.+.+.++.++.+.
T Consensus        83 ~v~d~~~~~s~~~~~--~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  134 (168)
T 1z2a_A           83 LVFSTTDRESFEAIS--SWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG  134 (168)
T ss_dssp             EEEETTCHHHHHTHH--HHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHH
Confidence            999999999999888  8998888776789999999999998877776555443

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=4.4e-30  Score=181.47  Aligned_cols=143  Identities=28%  Similarity=0.521  Sum_probs=121.6

Q ss_pred             CCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccc
Q 044772            9 LSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLR   87 (159)
Q Consensus         9 ~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~   87 (159)
                      .+............+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+
T Consensus        10 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   89 (191)
T 3dz8_A           10 GRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT   89 (191)
T ss_dssp             -CCEEEETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHH
T ss_pred             chhccccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHH
Confidence            344444445667889999999999999999999999998888888776555 4466677777889999999999999999


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ..++++++++|+|||++++.+|..+.  .|+..+.... .++|++||+||+|+.+.+.+..++++.+
T Consensus        90 ~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  154 (191)
T 3dz8_A           90 TAYYRGAMGFILMYDITNEESFNAVQ--DWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLL  154 (191)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             HHHHccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            99999999999999999999999988  8999998876 6899999999999998888877655443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=8.3e-29  Score=172.46  Aligned_cols=133  Identities=33%  Similarity=0.554  Sum_probs=116.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      +...+||+++|++|||||||+++|+++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++.++++++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            35679999999999999999999999999888888888877777788888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhh-C-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHY-A-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|||++++.+|..+.  .|+..+... . .+.|+++|+||+|+...++++.++++.+
T Consensus        86 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  140 (181)
T 2fn4_A           86 LVFAINDRQSFNEVG--KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF  140 (181)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence            999999999999988  888877443 2 5899999999999988888776655443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=1.1e-28  Score=170.41  Aligned_cols=132  Identities=33%  Similarity=0.657  Sum_probs=108.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..+++++++++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            56799999999999999999999999988777888776663 46677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|||++++.+|..+.  .|+..+.... .++|+++|+||+|+.+.+.++.++++.+
T Consensus        84 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  137 (170)
T 1z08_A           84 LVYDITDEDSFQKVK--NWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY  137 (170)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHH
Confidence            999999999999988  8988887654 5799999999999988887776654443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=6.5e-29  Score=170.75  Aligned_cols=131  Identities=31%  Similarity=0.559  Sum_probs=113.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++..++++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999999888888888877777778888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCcc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ||++++++|..+.  .|+..+.....  +.|+++|+||+|+.+.++++.++++.+
T Consensus        83 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  135 (168)
T 1u8z_A           83 FSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR  135 (168)
T ss_dssp             EETTCHHHHHHHH--HHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHH
Confidence            9999999999988  89888887653  899999999999988777766554443

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.96  E-value=3.1e-29  Score=175.08  Aligned_cols=127  Identities=87%  Similarity=1.425  Sum_probs=96.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ...+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+..++..+.+.+||++|++.+...+..++++++++
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            34567999999999999999999999999888888888766655555667778899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      ++|||++++.+|..+.. .|+..+....++.|+++|+||+|+.+.+.+
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  130 (182)
T 3bwd_D           84 ILAFSLISKASYENVSK-KWIPELKHYAPGVPIVLVGTKLDLRDDKQF  130 (182)
T ss_dssp             EEEEETTCHHHHHHHHH-THHHHHHHHCTTCCEEEEEECHHHHTCHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEechhhhcCccc
Confidence            99999999999999875 799999888778999999999999877664

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=2e-28  Score=168.79  Aligned_cols=132  Identities=33%  Similarity=0.573  Sum_probs=114.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      +...+||+++|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..++..++++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35679999999999999999999999998877777776665 44667788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++|||++++.+|..+.  .|+..+.... +++|+++|+||+|+.+.+.+..++++.
T Consensus        83 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~  136 (170)
T 1r2q_A           83 IVVYDITNEESFARAK--NWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS  136 (170)
T ss_dssp             EEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHH
Confidence            9999999999999988  8988888764 689999999999998877776655443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=3.4e-28  Score=169.63  Aligned_cols=134  Identities=33%  Similarity=0.565  Sum_probs=115.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .+...+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            346779999999999999999999999998877777776655 4466778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|+|||++++.+|..+.  .|+..+.... +++|+++|+||+|+.+.+.++.++.+.+
T Consensus        88 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~  143 (181)
T 2efe_B           88 AIIVFDVTNQASFERAK--KWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTY  143 (181)
T ss_dssp             EEEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHH
Confidence            99999999999999888  8998888775 5899999999999988777766554443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=4.2e-28  Score=173.46  Aligned_cols=124  Identities=57%  Similarity=1.003  Sum_probs=105.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      .....+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++.+++++
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (207)
T 2fv8_A           21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (207)
T ss_dssp             GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred             ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence            34567899999999999999999999999888888888877766677888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |+|||++++.+|..+.. .|+..+....++.|+++|+||+|+...
T Consensus       101 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A          101 LMCFSVDSPDSLENIPE-KWVPEVKHFCPNVPIILVANKKDLRSD  144 (207)
T ss_dssp             EEEEETTCHHHHHHHHH-THHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence            99999999999999854 899999887789999999999999765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.4e-28  Score=176.68  Aligned_cols=135  Identities=32%  Similarity=0.548  Sum_probs=110.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            346789999999999999999999999998877778877666 3466778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|+|||++++.+|..+.  .|+..+.... .++|++||+||+|+...++++.++++.|+
T Consensus        89 vilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  145 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCN--HWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFA  145 (223)
T ss_dssp             EEEEEC-CCHHHHHHHH--HHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH
Confidence            99999999999999988  8999888775 58999999999999888888766555443

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.96  E-value=1e-28  Score=172.17  Aligned_cols=127  Identities=21%  Similarity=0.292  Sum_probs=105.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ..+.+||+++|++|||||||+++|.++.+.. +.+|.+..+...+.+++..+.+++||++|++.     ..++++++++|
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            3567999999999999999999999999876 77888877777788888889999999999876     46778899999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhh---C-CCCCEEEEeeCcccc--cCccccccCCCcc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHY---A-PSVPIVLVGTKLDLR--KDRQFHLDYPGAY  153 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~---~-~~~piilv~nK~Dl~--~~r~v~~~~~~~~  153 (159)
                      +|||++++++|..+.  .|+..+...   . +++|++||+||+|+.  ..|.++.++++.+
T Consensus        78 lv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~  136 (178)
T 2iwr_A           78 FVFSLEDENSFQAVS--RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL  136 (178)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHH
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHH
Confidence            999999999999988  665544433   2 579999999999994  5677776665544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.96  E-value=5e-28  Score=172.66  Aligned_cols=133  Identities=32%  Similarity=0.679  Sum_probs=116.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            35679999999999999999999999999888888877666 34667788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |+|||++++.+|..+.  .|+..+.... .+.|++||+||+|+.+.+.+..++++.+
T Consensus        85 ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  139 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVK--MWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF  139 (206)
T ss_dssp             EEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            9999999999999998  8999888765 5799999999999988887776654443

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.96  E-value=4.1e-28  Score=170.87  Aligned_cols=135  Identities=32%  Similarity=0.512  Sum_probs=101.6

Q ss_pred             CCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 044772           12 STTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY   91 (159)
Q Consensus        12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   91 (159)
                      .........+.+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++
T Consensus        11 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   90 (190)
T 3con_A           11 RENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM   90 (190)
T ss_dssp             --------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------C
T ss_pred             cccccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhh
Confidence            33444455678999999999999999999999998888888888777777778888889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccC
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      ..++++++|||++++.+|..+.  .|+..+....  .++|+++|+||+|+.. +.+..++
T Consensus        91 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~  147 (190)
T 3con_A           91 RTGEGFLCVFAINNSKSFADIN--LYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQ  147 (190)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHH
T ss_pred             CcCCEEEEEEECcCHHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHH
Confidence            9999999999999999999987  8988887765  3799999999999976 4444443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.96  E-value=1.9e-28  Score=175.06  Aligned_cols=126  Identities=68%  Similarity=1.189  Sum_probs=110.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      .....+||+++|++|||||||+++|..+.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++++++++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            34567999999999999999999999999988888888887777778888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      ++|||++++.+|..+.. .|+..+....++.|++||+||+|+...+.
T Consensus       106 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~  151 (204)
T 4gzl_A          106 LICFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDDKD  151 (204)
T ss_dssp             EEEEETTCHHHHHHHHH-THHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEechhhccchh
Confidence            99999999999999875 89999998888999999999999987654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=3.5e-28  Score=170.41  Aligned_cols=132  Identities=31%  Similarity=0.560  Sum_probs=114.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ..+.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++++++++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            35679999999999999999999999998887778777555 45667788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |+|||++++.+|..+.  .|+..+.... .++|++||+||+|+...+.++.++++.
T Consensus        87 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  140 (186)
T 2bme_A           87 LLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASR  140 (186)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH
Confidence            9999999999999988  8988887765 689999999999998877777655444

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=6.1e-28  Score=168.20  Aligned_cols=134  Identities=32%  Similarity=0.596  Sum_probs=107.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEE-EEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      .....+||+++|++|||||||+++|.++.+. ..+.++.+..+.. .+..++..+.+.+||++|++.+...+..++.+++
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3467899999999999999999999998885 4567777766643 5577888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++++|||++++.+|..+.  .|+..+.... .+.|+++|+||+|+...+.+..++++.+
T Consensus        86 ~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  142 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQ--AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL  142 (180)
T ss_dssp             EEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence            999999999999999988  8999888776 5899999999999988777766554443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=4.4e-28  Score=167.22  Aligned_cols=132  Identities=27%  Similarity=0.546  Sum_probs=115.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++++++++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999999998888788877666 446677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|||++++.++..+.  .|+..+.... +..|+++|+||+|+.+.+++..++.+.+
T Consensus        84 ~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~  137 (170)
T 1z0j_A           84 IVYDITKEETFSTLK--NWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY  137 (170)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH
Confidence            999999999999987  8999888774 6899999999999988777766554443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.95  E-value=3.6e-28  Score=171.63  Aligned_cols=134  Identities=31%  Similarity=0.653  Sum_probs=117.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            345789999999999999999999999998888788776655 4567788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|+|||++++.+|..+.  .|+..+.... .+.|++||+||+|+...+.+..++++.+
T Consensus        92 ~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  147 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF  147 (196)
T ss_dssp             EEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHH
Confidence            99999999999999998  8999888775 4799999999999998887776554443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.95  E-value=2.1e-28  Score=168.07  Aligned_cols=130  Identities=31%  Similarity=0.533  Sum_probs=114.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+++|++|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++++++++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888888888777777778888889999999999999998889999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ||++++.++..+.  .|+..+....  .+.|+++|+||+|+...++++.++++.
T Consensus        82 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (167)
T 1kao_A           82 YSLVNQQSFQDIK--PMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA  133 (167)
T ss_dssp             EETTCHHHHHHHH--HHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH
Confidence            9999999999888  8888777654  489999999999998877776655443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.7e-28  Score=174.80  Aligned_cols=134  Identities=32%  Similarity=0.593  Sum_probs=105.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  100 (200)
T 2o52_A           21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG  100 (200)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence            346789999999999999999999999998877777777555 4466778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|+|||++++.+|..+.  .|+..+.... .++|++||+||+|+...+.++.+++..+
T Consensus       101 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  156 (200)
T 2o52_A          101 ALLVYDITSRETYNSLA--AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF  156 (200)
T ss_dssp             EEEEEETTCHHHHHTHH--HHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence            99999999999999988  8998887765 5899999999999988777776554443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=4.9e-28  Score=172.21  Aligned_cols=132  Identities=27%  Similarity=0.577  Sum_probs=115.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++++++++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            35679999999999999999999999998877788877665 34666788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      |+|||++++.+|..+.  .|+..+.... .+.|++||+||+|+.+.+.+..++++.
T Consensus        85 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  138 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQ--DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQ  138 (203)
T ss_dssp             EEEEETTCHHHHHHHH--HHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHH
T ss_pred             EEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHH
Confidence            9999999999999888  8999888776 589999999999998887776655443

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3e-28  Score=175.49  Aligned_cols=135  Identities=24%  Similarity=0.401  Sum_probs=105.7

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccccccccC
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLRPLSYRG   93 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~   93 (159)
                      ......+||+|+|++|||||||+++|++..  +...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.
T Consensus        32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            355667999999999999999999999644  344444433344466777889889999999999876 45566778899


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCcc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++++|+|||++++.+|..+.  .|...+...  ..++|++|||||+|+.+.|+++.++++.+
T Consensus       112 a~~~ilVydvt~~~sf~~~~--~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~  171 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKAS--ELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC  171 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHH--HHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHH--HHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHH
Confidence            99999999999999999998  888777654  25799999999999998888887765544

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=5.5e-28  Score=166.56  Aligned_cols=129  Identities=31%  Similarity=0.570  Sum_probs=111.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..++++++++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999998877778877665 4566778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccC---ccccccCCC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKD---RQFHLDYPG  151 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~---r~v~~~~~~  151 (159)
                      |||++++.++..+.  .|+..+.... .+.|+++|+||+|+...   +++..++++
T Consensus        82 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~  135 (170)
T 1ek0_A           82 VYDVTKPQSFIKAR--HWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGE  135 (170)
T ss_dssp             EEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHH
T ss_pred             EEecCChHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHH
Confidence            99999999999988  8998888765 68999999999999765   566554443

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.95  E-value=6.5e-28  Score=167.67  Aligned_cols=132  Identities=37%  Similarity=0.665  Sum_probs=109.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++++
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            345789999999999999999999999998878788877665 4567788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCccccccCCCc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      +++|||++++.++..+.  .|+..+....     .++|+++|+||+|+. .++++.++.+.
T Consensus        83 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~  140 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQA  140 (177)
T ss_dssp             EEEEEETTCHHHHHTHH--HHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHH
T ss_pred             EEEEEECcCHHHHHHHH--HHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHH
Confidence            99999999999999987  8988887653     578999999999997 55665554433

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=5.6e-28  Score=170.39  Aligned_cols=129  Identities=32%  Similarity=0.630  Sum_probs=111.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            456789999999999999999999999998888888876665 4566778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccC
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      +|+|||++++.++..+.  .|+..+..+.  .++|++||+||+|+. .+.+..++
T Consensus        91 ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~  142 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLD--NWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNE  142 (195)
T ss_dssp             EEEEEETTCHHHHHTHH--HHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHH
T ss_pred             EEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHH
Confidence            99999999999999988  8999988765  579999999999994 34454443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=1.4e-28  Score=174.84  Aligned_cols=136  Identities=32%  Similarity=0.523  Sum_probs=103.1

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 044772           15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG   93 (159)
Q Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   93 (159)
                      ......+.+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.
T Consensus        21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  100 (199)
T 2p5s_A           21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK  100 (199)
T ss_dssp             -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred             CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence            334556789999999999999999999999998877778777655 4567788888999999999999999888999999


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccc------cCccccccCCCc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLR------KDRQFHLDYPGA  152 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~------~~r~v~~~~~~~  152 (159)
                      ++++|+|||++++.+|..+.  .|+..+.... .++|++||+||+|+.      ..+.+..++++.
T Consensus       101 ~d~iilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~  164 (199)
T 2p5s_A          101 ADGVLLLYDVTCEKSFLNIR--EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK  164 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHH--HHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH
T ss_pred             CCEEEEEEECCChHHHHHHH--HHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHH
Confidence            99999999999999999988  8998888765 589999999999997      356665554443

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.95  E-value=6.6e-29  Score=178.53  Aligned_cols=135  Identities=35%  Similarity=0.569  Sum_probs=113.5

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCe----------EEEEEEEeCCCcccccc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGR----------TVNLGLWDTAGQEDYNR   85 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~   85 (159)
                      ....+.+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++.          .+.+.+||++|++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            3456789999999999999999999999998877777777655 335555554          78899999999999999


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      .+..+++.++++|+|||++++.+|..+.  .|+..+....  .++|++||+||+|+.+.+.++.++++.+
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~  167 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL  167 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence            9999999999999999999999999888  8988887665  5899999999999988877766554443

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.3e-28  Score=173.27  Aligned_cols=133  Identities=26%  Similarity=0.414  Sum_probs=114.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      .....+||+++|++|||||||+++|.++.+...+.++.+..+...+.+++..+.+.+||++|++. ...+..++..++++
T Consensus        24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            34567999999999999999999999999988888888887777778888889999999999987 66778889999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++|||++++++|..+.  .|+..+....  .++|++||+||+|+.+.+.++.++++.+
T Consensus       103 ilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  158 (196)
T 2atv_A          103 VLVYDITDRGSFEEVL--PLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL  158 (196)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHH--HHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            9999999999999988  8888887653  5899999999999988888876655544

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=1.2e-28  Score=175.16  Aligned_cols=135  Identities=27%  Similarity=0.407  Sum_probs=108.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEEECCeEEEEEEEeCCCcccccc-cccccccCCc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNR-LRPLSYRGAD   95 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~   95 (159)
                      .....+||+|+|++|||||||+++|.+..+...+.++. .+.+...+.+++..+.+.+||++|++.+.. ++..++..++
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            34567999999999999999999997654433333333 333455677888899999999999987765 6777889999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ++|+|||++++.+|..+.  .|+..+....  .++|++||+||+|+.+.+.++.++++.+|
T Consensus        99 ~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a  157 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVP--ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA  157 (195)
T ss_dssp             EEEEEEETTCHHHHHTHH--HHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH
Confidence            999999999999999998  8998888765  48999999999999988888877665544

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.95  E-value=4.2e-28  Score=168.60  Aligned_cols=132  Identities=33%  Similarity=0.543  Sum_probs=113.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      +.+.+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.+++++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999999998877777776544 45667788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++|||++++.+|..+.  .|+..+.... .++|+++|+||+|+.+.++++.++++.
T Consensus        91 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  144 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTS--KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER  144 (179)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHH
Confidence            9999999999999988  8988887654 589999999999998877776655443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=6.1e-28  Score=166.20  Aligned_cols=129  Identities=25%  Similarity=0.355  Sum_probs=90.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||+++|.+..+. ...++.+..+...+.+++..+.+.+||++|++.+...+..++..++++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            579999999999999999999876654 3345556666667778899999999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |++++++|..+.  .|+..+....  +++|+++|+||+|+.+.+.++.++++.+
T Consensus        81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  132 (166)
T 3q72_A           81 SVTDKGSFEKAS--ELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC  132 (166)
T ss_dssp             ETTCHHHHHHHH--HHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH
Confidence            999999999998  8888887653  5899999999999998888877665543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3.3e-28  Score=167.98  Aligned_cols=129  Identities=28%  Similarity=0.470  Sum_probs=111.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++..++++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            46899999999999999999999999887888888777776777788888999999999999988888999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccccccCCC
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQFHLDYPG  151 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v~~~~~~  151 (159)
                      ||++++.++..+.  .|+..+....   ++.|+++|+||+|+...+++..++++
T Consensus        82 ~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~  133 (172)
T 2erx_A           82 YSITSRQSLEELK--PIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE  133 (172)
T ss_dssp             EETTCHHHHHTTH--HHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EECcCHHHHHHHH--HHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH
Confidence            9999999999887  7877776653   57999999999999887777654433

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=6.5e-28  Score=167.23  Aligned_cols=131  Identities=27%  Similarity=0.360  Sum_probs=99.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--ccccccccccCCcEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED--YNRLRPLSYRGADVFI   98 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~i   98 (159)
                      ..+||+++|++|||||||+++|.+..+...+.+...+.+...+.+++..+.+.+||++|++.  +......++..+++++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i   82 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV   82 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence            46899999999999999999999888765444333333455677888889999999999987  4556677889999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +|||++++.+|..+.  .|+..+....  .+.|+++|+||+|+.+.++++.++++.+
T Consensus        83 ~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  137 (175)
T 2nzj_A           83 IVYSIADRGSFESAS--ELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC  137 (175)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEECCCHHHHHHHH--HHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHH
Confidence            999999999999988  8888887653  4899999999999998888876665443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=8.7e-28  Score=168.93  Aligned_cols=132  Identities=33%  Similarity=0.529  Sum_probs=113.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE--EEEEECCe---------EEEEEEEeCCCcccccccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS--ANVMVDGR---------TVNLGLWDTAGQEDYNRLR   87 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~~~~~~   87 (159)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+..+.  ..+..++.         .+.+.+||++|++.+...+
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            467899999999999999999999999988777888776654  34455554         7889999999999999999


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCc
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ..++++++++|+|||++++.++..+.  .|+..+....  .++|+++|+||+|+.+.+.+..++.+.
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  152 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVR--NWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE  152 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            99999999999999999999999988  8999888776  589999999999998877776555443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=1.6e-28  Score=170.95  Aligned_cols=132  Identities=27%  Similarity=0.482  Sum_probs=110.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECC-eEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG-RTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      .+.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++ ..+.+.+||++|++.+...+..++++++++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4679999999999999999999999888777777776444 45666765 678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC---CCCC-EEEEeeCcccccCccccccCCCcc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA---PSVP-IVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~p-iilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ++|||++++.+|..+.  .|+..+..+.   .+.| ++||+||+|+.+.+.++.++++.+
T Consensus        84 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~  141 (178)
T 2hxs_A           84 LLVYDITNYQSFENLE--DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF  141 (178)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH
Confidence            9999999999999988  8988887653   2455 899999999988887776655443

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=6.8e-28  Score=166.41  Aligned_cols=130  Identities=27%  Similarity=0.404  Sum_probs=98.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEEECCeEEEEEEEeCCCcccccc-cccccccCCcEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL   99 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~   99 (159)
                      .+||+++|++|||||||+++|.+..+...+.++. ...+...+.+++..+.+.+||++|++.+.. .+..++++++++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5799999999999999999999777654444433 344456777889899999999999988876 67778899999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCccccccCCCcc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |||++++++|..+.  .|+..+.....  ++|+++|+||+|+.+.+.++.++++.+
T Consensus        82 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  135 (169)
T 3q85_A           82 VFSVTDRRSFSKVP--ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL  135 (169)
T ss_dssp             EEETTCHHHHHTHH--HHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEECCChHHHHHHH--HHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH
Confidence            99999999999998  89888887764  899999999999998888887766544

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.95  E-value=8.7e-28  Score=169.36  Aligned_cols=137  Identities=21%  Similarity=0.291  Sum_probs=102.1

Q ss_pred             CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q 044772            1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      |+++.++...+..+......+.+||+|+|++|||||||+++|.++.+...+.+|.+..+.. +..+  .+.+.+||++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~   77 (188)
T 1zd9_A            1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQ   77 (188)
T ss_dssp             ------------------CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCS
T ss_pred             CCcccccccccccccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCC
Confidence            6677766666666666677789999999999999999999999999887778887766542 3333  467999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      +.+...+..++.+++++|+|||++++++|..+.  .|+..+...  ..+.|++||+||+|+.+.
T Consensus        78 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASK--NELHNLLDKPQLQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHH--HHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence            999999999999999999999999999999888  777776654  258999999999999754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=9.3e-28  Score=165.58  Aligned_cols=128  Identities=30%  Similarity=0.620  Sum_probs=104.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..++++++++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999998877788877665 4466677778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPG  151 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~  151 (159)
                      |||++++.+|..+.  .|+..+.... .+.|+++|+||+|+ ..+.+..++++
T Consensus        82 v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~  131 (170)
T 1g16_A           82 VYDITDERTFTNIK--QWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGE  131 (170)
T ss_dssp             EEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHH
T ss_pred             EEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHH
Confidence            99999999999888  8998888776 58999999999999 45555544433

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.95  E-value=1.9e-28  Score=174.45  Aligned_cols=135  Identities=32%  Similarity=0.417  Sum_probs=84.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccceeee-eEEEEEECCe--EEEEEEEeCCCccccccccccccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDN-FSANVMVDGR--TVNLGLWDTAGQEDYNRLRPLSYR   92 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~-~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~   92 (159)
                      .....+||+|+|++|||||||+++|.++  .+...+.+|.+.. +...+.+++.  .+.+.+||++|++.+...+..+++
T Consensus        16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3467899999999999999999999998  7777778887643 3556677776  889999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC----CCCEEEEeeCccccc-CccccccCCCccc
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYAP----SVPIVLVGTKLDLRK-DRQFHLDYPGAYT  154 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~-~r~v~~~~~~~~~  154 (159)
                      +++++|+|||++++.+|..+.  .|+..+.....    ++|++||+||+|+.+ .+.++.++++.++
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~  160 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESCK--AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA  160 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHHH--HHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH
T ss_pred             hCcEEEEEEECCCHHHHHHHH--HHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH
Confidence            999999999999999999998  99999988764    899999999999988 7888766655543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.95  E-value=2.3e-28  Score=173.79  Aligned_cols=134  Identities=31%  Similarity=0.655  Sum_probs=111.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            45689999999999999999999999888877777776555 45667888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |+|||++++.+|..+.  .|+..+.... .+.|++||+||+|+.+.+.++.++++.++
T Consensus       110 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~  165 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA  165 (199)
T ss_dssp             EECC-CCCSHHHHHHH--HHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH
Confidence            9999999999999998  8999988765 47999999999999998888887777654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.95  E-value=1.8e-27  Score=166.88  Aligned_cols=126  Identities=34%  Similarity=0.568  Sum_probs=108.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ...+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+||++|++.+...+..++..++++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999998888888887777777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCcccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~  148 (159)
                      |||++++.+|..+.  .|+..+....  .+.|+++|+||+|+.+ +.+..+
T Consensus        82 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~  129 (189)
T 4dsu_A           82 VFAINNTKSFEDIH--HYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTK  129 (189)
T ss_dssp             EEETTCHHHHHHHH--HHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHH
T ss_pred             EEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHH
Confidence            99999999999988  8888887754  4899999999999973 333333

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=1.4e-27  Score=166.33  Aligned_cols=131  Identities=31%  Similarity=0.590  Sum_probs=96.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCcccccccccccccCCcE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQEDYNRLRPLSYRGADV   96 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   96 (159)
                      ....+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.++ +..+.+.+||++|++.+...+..+++++++
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            35679999999999999999999999998888778776554 4455555 556789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccc-cCccccccCCC
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLR-KDRQFHLDYPG  151 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~-~~r~v~~~~~~  151 (159)
                      +|+|||++++.+|..+.  .|+..+....     .++|+++|+||+|+. ..+.+..++++
T Consensus        85 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~  143 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIK--SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ  143 (182)
T ss_dssp             EEEEEETTCHHHHHTHH--HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred             EEEEEECCChHHHHHHH--HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH
Confidence            99999999999999998  8988877653     579999999999995 44555544433

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=4.3e-27  Score=168.19  Aligned_cols=131  Identities=31%  Similarity=0.607  Sum_probs=109.6

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      ......+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++..++
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            3456679999999999999999999999998877778777665 346677888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCC
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYP  150 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~  150 (159)
                      ++|+|||++++.+|..+.  .|+..+..... +.|++||+||+|+ ..+.+..+++
T Consensus        95 ~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~  147 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIK--QWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQG  147 (213)
T ss_dssp             EEEEEEETTCHHHHHTHH--HHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHH
T ss_pred             EEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHH
Confidence            999999999999999988  89988887764 7999999999999 4555554443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.95  E-value=3.2e-27  Score=168.19  Aligned_cols=128  Identities=34%  Similarity=0.646  Sum_probs=108.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++++++++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            35679999999999999999999999998888888776554 44666778888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCccccccC
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      |+|||++++.+|..+.  .|+..+....     .+.|++||+||+|+. .+.+..++
T Consensus        85 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~  138 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKR  138 (207)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHH
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHH
Confidence            9999999999999987  8888877654     478999999999997 45554433

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.94  E-value=3.8e-27  Score=161.44  Aligned_cols=124  Identities=35%  Similarity=0.563  Sum_probs=109.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++..++++++||
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence            58999999999999999999999998888888887777777778888899999999999999888889999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCC--CCCEEEEeeCcccccCcccccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAP--SVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~--~~piilv~nK~Dl~~~r~v~~~  148 (159)
                      |++++.++..+.  .|+..+.....  +.|+++|+||+|+.. +.+..+
T Consensus        83 d~~~~~~~~~~~--~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~  128 (166)
T 2ce2_X           83 AINNTKSFEDIH--QYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESR  128 (166)
T ss_dssp             ETTCHHHHHHHH--HHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHH
T ss_pred             ECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHH
Confidence            999999999987  89888877653  899999999999976 444433

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.94  E-value=5.1e-27  Score=166.04  Aligned_cols=131  Identities=28%  Similarity=0.498  Sum_probs=108.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeE----------------------------
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRT----------------------------   69 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~----------------------------   69 (159)
                      ....+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+..++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            45679999999999999999999999998888888876555 3345555543                            


Q ss_pred             ---------EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           70 ---------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        70 ---------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                               +.+.+||+||++.+...+..+++.++++++|||++++.++..+.  .|+..+..... .|+++|+||+| .
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~--~~~~~i~~~~~-~piilv~NK~D-~  159 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK--TWVNQLKISSN-YIIILVANKID-K  159 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSC-CEEEEEEECTT-C
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH--HHHHHHHhhCC-CcEEEEEECCC-c
Confidence                     78999999999999999999999999999999999999999888  89998887664 99999999999 5


Q ss_pred             cCccccccCCCcc
Q 044772          141 KDRQFHLDYPGAY  153 (159)
Q Consensus       141 ~~r~v~~~~~~~~  153 (159)
                      ..+.+..++.+.+
T Consensus       160 ~~~~~~~~~~~~~  172 (208)
T 3clv_A          160 NKFQVDILEVQKY  172 (208)
T ss_dssp             C-CCSCHHHHHHH
T ss_pred             ccccCCHHHHHHH
Confidence            5666666554443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.94  E-value=3.8e-27  Score=169.95  Aligned_cols=125  Identities=30%  Similarity=0.518  Sum_probs=110.3

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      ......+||+++|.+|||||||+++|+.+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++.+++
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            3456779999999999999999999888777777777776555 446677888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ++|+|||++++.+|..+.  .|+..+....+++|++||+||+|+.+.+
T Consensus        90 ~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  135 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDIKDRK  135 (221)
T ss_dssp             EEEEEEETTCHHHHHTHH--HHHHHHHHHSTTCCEEEEEECTTSSSCS
T ss_pred             EEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECCcccccc
Confidence            999999999999999998  9999999988899999999999997644

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.2e-27  Score=167.95  Aligned_cols=128  Identities=27%  Similarity=0.471  Sum_probs=109.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ....+||+++|++|||||||+++|.++.+...+.++.+..+......++..+.+.+||++|++.+...+..++..+++++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            34679999999999999999999999998888888888777767777888899999999999999988899999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCccccccC
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      +|||++++.+|..+.  .|+..+....   ++.|++||+||+|+.+ +.+..++
T Consensus        85 ~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~  135 (199)
T 2gf0_A           85 LVFSVTSKQSLEELG--PIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTRE  135 (199)
T ss_dssp             EEEETTCHHHHHTTH--HHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHH
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHH
Confidence            999999999999888  6776665543   4789999999999975 4444433

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.94  E-value=7.5e-27  Score=165.22  Aligned_cols=125  Identities=14%  Similarity=0.181  Sum_probs=98.0

Q ss_pred             CCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 044772           13 TTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY   91 (159)
Q Consensus        13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   91 (159)
                      .....++...+||+|+|++|||||||+++|+++.+.. .+.+|.+..+. .+  +...+.+.+||++|++.+...+..++
T Consensus         8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~   84 (199)
T 4bas_A            8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYY   84 (199)
T ss_dssp             --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred             cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHH
Confidence            3444567788999999999999999999999999887 77888774333 23  33446799999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC---------CCCCEEEEeeCcccccC
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYA---------PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~---------~~~piilv~nK~Dl~~~  142 (159)
                      ++++++|+|||++++++|..+.  .|+..+....         .++|++||+||+|+...
T Consensus        85 ~~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           85 DNIDAVIFVVDSSDHLRLCVVK--SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHH--HHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             hcCCEEEEEEECCcHHHHHHHH--HHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            9999999999999999999998  7777765541         27999999999999876

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.7e-26  Score=162.79  Aligned_cols=136  Identities=18%  Similarity=0.256  Sum_probs=98.4

Q ss_pred             CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCC
Q 044772            1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNT-FPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG   79 (159)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g   79 (159)
                      |++++++.+.+. +......+.+||+++|++|||||||+++|.++. +...+.+|.+.. ...+.+++  +.+.+||++|
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G   76 (190)
T 2h57_A            1 MGSSHHHHHHSS-GLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSG   76 (190)
T ss_dssp             ---------------------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECC
T ss_pred             CCcccccccccc-CcccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCC
Confidence            555555544333 333345678999999999999999999999887 566677776632 33445554  6799999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccccC
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~  142 (159)
                      ++.+...+..++.+++++|+|||++++.+|..+.  .|+..+....    .+.|++||+||+|+.+.
T Consensus        77 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           77 QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK--EELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             STTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHH--HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             CHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHH--HHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            9999999999999999999999999999999988  7777776543    47999999999999754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.94  E-value=2.4e-26  Score=160.95  Aligned_cols=135  Identities=17%  Similarity=0.252  Sum_probs=97.7

Q ss_pred             CCCCCCCcCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q 044772            1 MTSTTASALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      |+++.++.+. ..+......+.+||+++|++|||||||+++|.++.+ ..+.++.+..+ ..+.+++  +.+.+||++|+
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~   75 (181)
T 2h17_A            1 MGSSHHHHHH-SSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQ   75 (181)
T ss_dssp             ---------------------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSS
T ss_pred             CCcccccccc-cCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCC
Confidence            4555544433 344445566789999999999999999999999887 45566665443 3445555  67999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      +.+...+..+++++|++++|||++++++|..+.  .|+..+...  ..+.|+++|+||+|+.+.
T Consensus        76 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR--EELYKMLAHEDLRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHH--HHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence            999999999999999999999999999999888  777777654  368999999999999763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.94  E-value=2.1e-27  Score=168.51  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=95.9

Q ss_pred             cCCCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee---EEEEEEC-CeEEEEEEEeCCCcccc
Q 044772            8 ALSSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF---SANVMVD-GRTVNLGLWDTAGQEDY   83 (159)
Q Consensus         8 ~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~-~~~~~~~i~D~~g~~~~   83 (159)
                      +.++.........+.+||+++|++|||||||++++.+. +...  ++.+..+   .....+. +..+.+++||++|++.|
T Consensus         6 ~~~~~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~   82 (196)
T 3llu_A            6 HHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF   82 (196)
T ss_dssp             --------------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT
T ss_pred             cccCCCCCCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHH
Confidence            33444555567778999999999999999999987764 3333  2322222   2222333 56678999999999998


Q ss_pred             cccc---cccccCCcEEEEEEeCCCh--hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc-------CccccccCCC
Q 044772           84 NRLR---PLSYRGADVFILAFSLISR--PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK-------DRQFHLDYPG  151 (159)
Q Consensus        84 ~~~~---~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~-------~r~v~~~~~~  151 (159)
                      ....   ..++++++++|+|||++++  +++..+.  .|+..+....+++|++||+||+|+..       .|.++.++++
T Consensus        83 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~  160 (196)
T 3llu_A           83 FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLH--ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRAND  160 (196)
T ss_dssp             TCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHH--HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhcccccccCCEEEEEEECCCchHHHHHHHH--HHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHH
Confidence            7766   7899999999999999987  5666665  78887766678999999999999754       5666655544


Q ss_pred             cc
Q 044772          152 AY  153 (159)
Q Consensus       152 ~~  153 (159)
                      .+
T Consensus       161 ~~  162 (196)
T 3llu_A          161 DL  162 (196)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=2.2e-26  Score=163.11  Aligned_cols=132  Identities=25%  Similarity=0.416  Sum_probs=102.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-ccccccccccCCcE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED-YNRLRPLSYRGADV   96 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~   96 (159)
                      ...+||+++|++|||||||+++|.+.  .+...+.++..+.+...+.+++..+.+.+||+.|++. +..+...+++.+++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            34689999999999999999999963  3444444443444556777889889999999999865 45566778888999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCcc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      +++|||++++++|..+.  .|+..+....  ++.|+++|+||+|+...|.+..++++.+
T Consensus        84 ~i~v~dv~~~~s~~~~~--~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~  140 (192)
T 2cjw_A           84 YLIVYSITDRASFEKAS--ELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX  140 (192)
T ss_dssp             EEEEEETTCHHHHHHHH--HHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHH--HHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHH
Confidence            99999999999999988  8887777653  4799999999999988888877665543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=5.2e-27  Score=168.70  Aligned_cols=133  Identities=28%  Similarity=0.453  Sum_probs=106.4

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEE-CCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMV-DGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+..+.. .... ++..+.+.+||++|++.+...+..++.+++
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            44678999999999999999999999988887777777655533 3333 344588999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhCC-CCCEEEEeeCcccccCccccccCCCc
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYAP-SVPIVLVGTKLDLRKDRQFHLDYPGA  152 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~r~v~~~~~~~  152 (159)
                      ++|+|||++++.+|..+.  .|+..+..... +.|++||+||+|+.+.+.+..++.+.
T Consensus        87 ~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  142 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLA--RWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVME  142 (218)
T ss_dssp             EEEEEEETTCHHHHHTHH--HHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH
Confidence            999999999999999998  89988887654 59999999999998877776655443

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.89  E-value=2.4e-28  Score=174.17  Aligned_cols=135  Identities=65%  Similarity=1.111  Sum_probs=116.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ..+.+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++.++++++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            35789999999999999999999999998888888887777666677777888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc------------cccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR------------QFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r------------~v~~~~~~~~~  154 (159)
                      +|||++++.+|..+.. .|+..+....++.|+++|+||+|+.+.+            .+..++++.++
T Consensus       107 lv~D~~~~~s~~~~~~-~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (204)
T 3th5_A          107 ICFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  173 (204)
Confidence            9999999999998865 7888888776789999999999997654            56656655554

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.93  E-value=5.4e-26  Score=172.47  Aligned_cols=122  Identities=69%  Similarity=1.223  Sum_probs=111.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ...+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++.+++++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            34589999999999999999999999998888888888887777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |||++++.+|..+.. .|+..+....+++|+++|+||+|+...
T Consensus       233 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          233 CFSLVSPASFHHVRA-KWYPEVRHHCPNTPIILVGTKLDLRDD  274 (332)
T ss_dssp             EEETTCHHHHHHHHH-THHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHHhhCCCCcEEEEEEchhcccc
Confidence            999999999998875 799988888779999999999999764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.93  E-value=6.7e-27  Score=164.91  Aligned_cols=123  Identities=27%  Similarity=0.295  Sum_probs=97.0

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----------cceeeeeEE-EE-EECCeEEEEEEEeCCCcccc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV-----------PTVFDNFSA-NV-MVDGRTVNLGLWDTAGQEDY   83 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----------~t~~~~~~~-~~-~~~~~~~~~~i~D~~g~~~~   83 (159)
                      ......+||+++|++|||||||++.+. +.+...+.           +|.+..+.. .+ ..++..+.+.+||++|++.+
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            345678999999999999999996554 45554433           344433321 22 45667889999999999999


Q ss_pred             cccccccccCCcEEEEEEeCC------ChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           84 NRLRPLSYRGADVFILAFSLI------SRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        84 ~~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ...+..++++++++|+|||++      +.++|..+.  .|+..+.....++|++||+||+|+.+.
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~--~~l~~~~~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR--ENLAEYGLTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH--HHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH--HHHHhhccccCCCCEEEEEEchhcccc
Confidence            999999999999999999999      556777776  888888655678999999999999764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.93  E-value=4.9e-26  Score=161.92  Aligned_cols=116  Identities=19%  Similarity=0.240  Sum_probs=91.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||+++|.++.+. .+.+|.+... ..+.+++  +.+.+||++|++.+...+..++++++++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS-EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee-EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45689999999999999999999988864 4566666543 4556666  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK  141 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~  141 (159)
                      |||++++++|..+.  .|+..+...  ..++|+++|+||+|+.+
T Consensus        99 v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           99 LVDCADHERLLESK--EELDSLMTDETIANVPILILGNKIDRPE  140 (198)
T ss_dssp             EEETTCGGGHHHHH--HHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             EEECCCHHHHHHHH--HHHHHHHhCcccCCCcEEEEEECCCccc
Confidence            99999999999988  888877654  25899999999999975

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.93  E-value=2.7e-25  Score=157.03  Aligned_cols=116  Identities=18%  Similarity=0.264  Sum_probs=97.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||+++|.++.+. .+.+|.+.. ...+.+++  +.+.+||++|++.+...+..++++++++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45679999999999999999999988874 456666553 34556666  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRK  141 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~  141 (159)
                      |||++++++|..+.  .|+..+...  ..+.|+++|+||+|+.+
T Consensus        97 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           97 LVDAADPERFDEAR--VELDALFNIAELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             EEETTCGGGHHHHH--HHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             EEECCChHHHHHHH--HHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence            99999999999988  788777654  25899999999999975

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.93  E-value=8.4e-27  Score=163.90  Aligned_cols=123  Identities=24%  Similarity=0.397  Sum_probs=92.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccceeeeeEE-EEEE---CCeEEEEEEEeCCCcccccccccccccCCc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNFSA-NVMV---DGRTVNLGLWDTAGQEDYNRLRPLSYRGAD   95 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~-~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   95 (159)
                      .+||+++|++|||||||+++|.+.  .+...+.+|.+..+.. .+..   ++..+.+.+||++|++.+...+..++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  4556667777655432 2222   235678999999999999988889999999


Q ss_pred             EEEEEEeCCCh-hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           96 VFILAFSLISR-PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        96 ~~i~v~d~~~~-~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ++++|||++++ .+|..+.  .|+..+....++.|++|||||+|+.+.+.++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~--~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~  131 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMK--PWLFNIKARASSSPVILVGTHLDVSDEKQRK  131 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHH--HHHHHHHHHCTTCEEEEEEECGGGCCHHHHH
T ss_pred             EEEEEEeCCcchhHHHHHH--HHHHHHHhhCCCCcEEEEEECCCcccchhhH
Confidence            99999999987 5788887  9999988777789999999999998777654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.93  E-value=1e-25  Score=154.72  Aligned_cols=114  Identities=18%  Similarity=0.264  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+++|.++.+.. +.||.+.. ...+..  ..+.+.+||++|++.+...+..++++++++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999888764 46666632 223333  34679999999999999888999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772          103 LISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      ++++++|..+.  .|+..+...  ..+.|+++|+||+|+.+.
T Consensus        77 ~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           77 SNDRERVNEAR--EELMRMLAEDELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             TTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             CCCHHHHHHHH--HHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence            99999999888  787777653  258999999999999765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.93  E-value=1.1e-24  Score=152.83  Aligned_cols=119  Identities=18%  Similarity=0.280  Sum_probs=99.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||+++|.++. ...+.+|.+... ..+..++  +.+.+||++|++.+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            567999999999999999999999888 666777766433 3444554  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCcc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~  144 (159)
                      |||++++.+|..+.  .|+..+...  ..+.|+++|+||+|+.+.+.
T Consensus        92 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  136 (186)
T 1ksh_A           92 VVDSADRQRMQDCQ--RELQSLLVEERLAGATLLIFANKQDLPGALS  136 (186)
T ss_dssp             EEETTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred             EEECcCHHHHHHHH--HHHHHHHhChhcCCCcEEEEEeCccCCCCCC
Confidence            99999999999888  777777654  25899999999999976543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.92  E-value=5.6e-25  Score=156.30  Aligned_cols=133  Identities=38%  Similarity=0.633  Sum_probs=110.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            3568999999999999999999999998877777776555 457778998899999999999999888888999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||+.+..+|..+.  .|+..+.... .+.|+++++||+|+.+.+.++.+++++++
T Consensus        83 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~  137 (199)
T 2f9l_A           83 LVYDIAKHLTYENVE--RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA  137 (199)
T ss_dssp             EEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EEEECcCHHHHHHHH--HHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHH
Confidence            999999999998887  8888776654 57899999999999887777766555443

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=4.6e-25  Score=155.04  Aligned_cols=117  Identities=17%  Similarity=0.267  Sum_probs=95.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||+++|.++.+. .+.+|.+... ..+.+++  +.+.+||++|++.+...+..++.++|++|+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC-EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            46799999999999999999999988876 5666666333 3445554  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      |||++++++|..+.  .|+..+...  ..+.|+++|+||+|+.+.
T Consensus        90 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~  132 (187)
T 1zj6_A           90 VVDSTDRERISVTR--EELYKMLAHEDLRKAGLLIFANKQDVKEC  132 (187)
T ss_dssp             EEETTCTTTHHHHH--HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             EEeCCCHHHHHHHH--HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence            99999999999988  888877765  358999999999999753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.92  E-value=2e-24  Score=149.03  Aligned_cols=117  Identities=16%  Similarity=0.214  Sum_probs=96.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|+|||||+++|.++.+. .+.+|.+... ..+.++  .+.+.+||++|++.+...+..+++++|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV-ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE-EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce-EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            35689999999999999999999988875 3466655332 344455  3679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~  142 (159)
                      |||++++.+|..+.  .|+..+....  .+.|+++|+||+|+.+.
T Consensus        81 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           81 VVDSCDRDRIGISK--SELVAMLEEEELRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             EEETTCCTTHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EEECCCHHHHHHHH--HHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence            99999999999887  7776665442  58999999999999765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.92  E-value=1e-24  Score=154.34  Aligned_cols=134  Identities=36%  Similarity=0.599  Sum_probs=114.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|.+.+...+..++..++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            45679999999999999999999999998878888877665 55778889888899999999999988888899999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ++|||+.+..+|..+.  .|+..+.... .+.|+++++||+|+.+.+.+..+++++++
T Consensus       106 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~  161 (191)
T 1oix_A          106 LLVYDIAKHLTYENVE--RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA  161 (191)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence            9999999999998887  7888776654 47899999999999887777666555543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.92  E-value=4.6e-25  Score=156.12  Aligned_cols=119  Identities=17%  Similarity=0.243  Sum_probs=92.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ...+.+||+++|++|||||||+++|.++.+. .+.||.+.. ...+..++  +.+.+||++|++.+...+..++.+++++
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3457799999999999999999999988875 345555522 22334433  6799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~  142 (159)
                      ++|||++++++|..+.  .|+..+....  .+.|++||+||+|+.+.
T Consensus       101 ilv~D~~~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A          101 IFVVDSNDRERVQESA--DELQKMLQEDELRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             EEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EEEEECCCHHHHHHHH--HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence            9999999999999888  7877776532  58999999999999765

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.92  E-value=5.4e-25  Score=154.33  Aligned_cols=119  Identities=22%  Similarity=0.341  Sum_probs=96.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ...+||+++|++|||||||+++|.++.+ ..+.+|.+.. ...+..++  +.+.+||++|++.+...+..++.+++++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4579999999999999999999998765 3445555532 23445553  679999999999999888999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCcc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~  144 (159)
                      |||++++++|..+.  .|+..+...  ..+.|+++|+||+|+.+.+.
T Consensus        90 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~  134 (181)
T 1fzq_A           90 VIDSADRKRFEETG--QELTELLEEEKLSCVPVLIFANKQDLLTAAP  134 (181)
T ss_dssp             EEETTCGGGHHHHH--HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC
T ss_pred             EEECcCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECcCcccCCC
Confidence            99999999999887  777766543  25799999999999976543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.92  E-value=1.1e-25  Score=170.76  Aligned_cols=128  Identities=13%  Similarity=0.105  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---cccccccCCcEE
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPT---DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR---LRPLSYRGADVF   97 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~   97 (159)
                      ||+++|++|||||||++++.++.+..   .+.+|.+..+..   ++ ..+++++|||+|+++|..   .+..|+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            68999999999999999887654332   256677665542   23 347899999999999964   358899999999


Q ss_pred             EEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccccC-------ccccccCCCccccc
Q 044772           98 ILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD-------RQFHLDYPGAYTIS  156 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~-------r~v~~~~~~~~~~~  156 (159)
                      |+|||++++ .++.... ..|+..+....+++|++|+|||+|+...       |+|+.++++++|..
T Consensus        77 IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~  142 (331)
T 3r7w_B           77 VYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL  142 (331)
T ss_dssp             EEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred             EEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence            999999987 3333320 1446666666789999999999999764       67888887777753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.92  E-value=1.3e-24  Score=155.68  Aligned_cols=121  Identities=14%  Similarity=0.101  Sum_probs=92.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCCcEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGR-TVNLGLWDTAGQEDYNR-LRPLSYRGADVF   97 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~   97 (159)
                      .+.+||+++|++|||||||+++|+++.+...+.++....+.  +.+++. .+.+.+||++|++.+.. ++..++++++++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            46789999999999999999999999988777655433222  455543 57899999999999887 788889999999


Q ss_pred             EEEEeCCChh-hHHhhhhhhHHHHHhhh---CCCCCEEEEeeCcccccCc
Q 044772           98 ILAFSLISRP-SYENISKKKWVPELRHY---APSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        98 i~v~d~~~~~-s~~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~r  143 (159)
                      |+|||+++.. ++..... .|...+...   ..++|++||+||+|+...+
T Consensus        83 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  131 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAE-FLYQVLIDSMALKNSPSLLIACNKQDIAMAK  131 (214)
T ss_dssp             EEEEETTTHHHHHHHHHH-HHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEEEECCCcCHHHHHHHH-HHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence            9999999854 4555542 455444432   3479999999999998663

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.92  E-value=1.1e-24  Score=153.33  Aligned_cols=117  Identities=19%  Similarity=0.219  Sum_probs=96.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||+++|..+.+.. +.+|.+.. ...+..++  +.+.+||++|++.+...+..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            467999999999999999999999887753 45665532 23344443  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~  142 (159)
                      |||++++++|..+.  .|+..+....  .+.|+++|+||+|+...
T Consensus        96 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           96 VVDSTDRDRMGVAK--HELYALLDEDELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             EEETTCCTTHHHHH--HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred             EEeCCCHHHHHHHH--HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence            99999999999887  7777665542  58999999999999765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.4e-24  Score=151.68  Aligned_cols=117  Identities=16%  Similarity=0.203  Sum_probs=94.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||+++|.++.+ ..+.++.+.. ...+.+++  +.+.+||++|++.+...+..++.+++++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5679999999999999999999998777 4555665533 23444554  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      |||++++.+|..+.  .|+..+...  ..+.|+++|+||+|+.+.
T Consensus        92 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           92 VVDSTDKDRMSTAS--KELHLMLQEEELQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             EEETTCTTTHHHHH--HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             EEECCCHHHHHHHH--HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence            99999999999888  788877765  368999999999999764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.91  E-value=5e-25  Score=166.79  Aligned_cols=130  Identities=22%  Similarity=0.310  Sum_probs=100.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFP---TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY-----NRLRPLSYR   92 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~   92 (159)
                      ..+||+++|++|||||||+++|+++...   ..+.+|.+..+. ...+++ .+.+.+||+||++.+     ...+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            4689999999999999999999987422   235566665554 334444 478999999999988     678888999


Q ss_pred             CCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCccccc--Ccc----ccccCCCc
Q 044772           93 GADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRK--DRQ----FHLDYPGA  152 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~--~r~----v~~~~~~~  152 (159)
                      +++++|+|||++++++|..+.. ..|+..+....+++|++||+||+|+.+  .|+    +..++++.
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~  146 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSE  146 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHH
Confidence            9999999999999999998861 144666666677899999999999987  665    55444433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.90  E-value=4e-25  Score=163.23  Aligned_cols=129  Identities=20%  Similarity=0.276  Sum_probs=95.9

Q ss_pred             CCCCcceeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCcccce-eeeeE-E--------------EEEEC
Q 044772           15 TTTTATKFIKCVTVRDG---------AVGKTCLLISYTG---NTFPTDYVPTV-FDNFS-A--------------NVMVD   66 (159)
Q Consensus        15 ~~~~~~~~~ki~vvG~~---------~~GKSsli~~l~~---~~~~~~~~~t~-~~~~~-~--------------~~~~~   66 (159)
                      ........+||+|+|.+         |||||||+++|++   +.+...+.++. +..+. .              ...++
T Consensus        12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~   91 (255)
T 3c5h_A           12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED   91 (255)
T ss_dssp             TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred             CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence            33445677999999999         9999999999998   56766666665 22221 1              11245


Q ss_pred             CeEEEEEEEe-----------------------CCCccccccccccccc---------------------CCcEEEEEEe
Q 044772           67 GRTVNLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFS  102 (159)
Q Consensus        67 ~~~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d  102 (159)
                      +..+.+++||                       ++|++.+..++..++.                     +++++|+|||
T Consensus        92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D  171 (255)
T 3c5h_A           92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID  171 (255)
T ss_dssp             ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred             CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence            6778899999                       6677778888888887                     7999999999


Q ss_pred             CCCh--hhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccc
Q 044772          103 LISR--PSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus       103 ~~~~--~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v  145 (159)
                      ++++  ++|..+.  .|+..+...  ..++|++||+||+|+.+.+.+
T Consensus       172 ~t~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v  216 (255)
T 3c5h_A          172 VSRGMNRNFDDQL--KFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI  216 (255)
T ss_dssp             CBC----CHHHHH--HHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred             CCCCchhhHHHHH--HHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence            9998  8999988  899888765  258999999999999877666

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.90  E-value=5.5e-24  Score=162.48  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=89.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ...+.+||+|+|++|||||||+++|.++.+... .+|.+..+. .+...  .+.+.+||++|++.+..++..+++.++++
T Consensus       161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~-~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~v  236 (329)
T 3o47_A          161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL  236 (329)
T ss_dssp             --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE-EEEET--TEEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred             cccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE-EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            344678999999999999999999998887543 344443332 23333  36799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r  143 (159)
                      |+|||++++.+|..+.  .|+..+....  +++|++||+||+|+.+.+
T Consensus       237 ilV~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilV~NK~Dl~~~~  282 (329)
T 3o47_A          237 IFVVDSNDRERVNEAR--EELMRMLAEDELRDAVLLVFANKQDLPNAM  282 (329)
T ss_dssp             EEEEETTCSSSHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEEEECCchHHHHHHH--HHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence            9999999999999988  5555544332  589999999999997653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.88  E-value=3.3e-22  Score=138.83  Aligned_cols=117  Identities=17%  Similarity=0.240  Sum_probs=89.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ..+.++|+++|++|||||||+++|.++.+...+.++....+ ...+..++.  .+.+||++|++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            35678999999999999999999999888776655544333 334556664  478999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++|||++++......   .++..+..  .++|+++|+||+|+.+.
T Consensus        83 i~v~d~~~~~~~~~~---~~l~~~~~--~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV---EAINHAKA--ANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             EEEEETTCCCCHHHH---HHHHHHGG--GSCCEEEEEETTTSSCS
T ss_pred             EEEEECCCCCcHHHH---HHHHHHHh--CCCCEEEEEECccCCcC
Confidence            999999884322222   22222222  47899999999999753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=3.1e-23  Score=148.92  Aligned_cols=118  Identities=13%  Similarity=0.126  Sum_probs=94.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC--
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPT---DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG--   93 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--   93 (159)
                      ....++|+++|++|+|||||+++|.+..+..   .+.++....+        ..+.+.+||+||++.+...+..++..  
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            3567899999999999999999999888654   2444443322        33568999999999998888888877  


Q ss_pred             --CcEEEEEEeCC-ChhhHHhhhhhhHHHHHhhh-----CCCCCEEEEeeCcccccCcccc
Q 044772           94 --ADVFILAFSLI-SRPSYENISKKKWVPELRHY-----APSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        94 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~r~v~  146 (159)
                        ++++|+|||++ ++++|..+.  .|+..+...     ..++|+++|+||+|+...+.+.
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  139 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTA--EFLVDILSITESSCENGIDILIACNKSELFTARPPS  139 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHH--HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHH--HHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence              89999999999 888998887  777666543     3589999999999998776654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.2e-23  Score=145.45  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=89.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---cccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD---YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRG---   93 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---   93 (159)
                      ...++|+++|++|||||||+++|.+..+...   +.++..        .+...+.+.+||+||++.+...+..++..   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            4678999999999999999999998876431   222221        11133568999999999988887777765   


Q ss_pred             -CcEEEEEEeCC-ChhhHHhhhhhhHHHHHhhh-----CCCCCEEEEeeCcccccCcccc
Q 044772           94 -ADVFILAFSLI-SRPSYENISKKKWVPELRHY-----APSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        94 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~r~v~  146 (159)
                       ++++|+|||++ ++++|..+.  .|+..+...     ..+.|+++|+||+|+.+.+.+.
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  175 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTTA--EFLVDILSITESSCENGIDILIACNKSELFTARPPS  175 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHHH--HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred             cCCEEEEEEECCCCchhHHHHH--HHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence             89999999999 899998887  776666543     2489999999999998766553

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.87  E-value=8.7e-22  Score=135.92  Aligned_cols=116  Identities=15%  Similarity=0.122  Sum_probs=83.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeee-eEEEEEECCeEEEEEEEeCCCcccccc------ccccccc--
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDN-FSANVMVDGRTVNLGLWDTAGQEDYNR------LRPLSYR--   92 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--   92 (159)
                      .++|+++|++|||||||+++|.+..+...+.++.... ....+..++  ..+.+||++|++.+..      +...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            5899999999999999999999877654434433222 233445555  4699999999987753      2345554  


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      +++++++|+|+++.+..   .  .|+..+..  .+.|+++|+||+|+...+.+.
T Consensus        81 ~~~~~i~v~D~~~~~~~---~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~  127 (165)
T 2wji_A           81 KPDLVVNIVDATALERN---L--YLTLQLME--MGANLLLALNKMDLAKSLGIE  127 (165)
T ss_dssp             CCSEEEEEEETTCHHHH---H--HHHHHHHH--TTCCEEEEEECHHHHHHTTCC
T ss_pred             CCCEEEEEecCCchhHh---H--HHHHHHHh--cCCCEEEEEEchHhccccChh
Confidence            89999999999875433   2  67766655  368999999999998766655

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.87  E-value=6.9e-22  Score=143.20  Aligned_cols=126  Identities=10%  Similarity=0.018  Sum_probs=85.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-ccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY-VPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRPL   89 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   89 (159)
                      ...+||+|+|++|||||||+++|+++.+.... ..+...........++  ..+.+||+||+...         ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            46799999999999999999999988764221 1111111122223333  56999999998321         111234


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL  147 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~  147 (159)
                      ++..++++|+|||++++.+|.......|+..+....++.|+++|+||+|+.+.+++..
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~  162 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSI  162 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCH
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHH
Confidence            4678899999999999888763322267777776656899999999999987776654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.87  E-value=1.6e-22  Score=163.16  Aligned_cols=127  Identities=22%  Similarity=0.304  Sum_probs=96.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEE---------EECCeEEEEEEEeCCCccccccccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV---------MVDGRTVNLGLWDTAGQEDYNRLRP   88 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~~~i~D~~g~~~~~~~~~   88 (159)
                      .....+||+++|.+|||||||+++|.++.+...+.+|.+..+....         ..++..+.+.+||++|++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4567899999999999999999999999988888888776654321         1123357899999999999999989


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccC
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      .+++.++++|+|||+++.   ....  .|+..+..+.++.|++||+||+|+.+.+.+..++
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~--~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~  172 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKH--YWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKK  172 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHH--HHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHH
T ss_pred             HHccCCcEEEEEEeCCCc---hhHH--HHHHHHHHhCCCCCEEEEEECCCcccccccCHHH
Confidence            999999999999998754   4444  8999999888889999999999998877776543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.87  E-value=1.2e-21  Score=136.28  Aligned_cols=116  Identities=23%  Similarity=0.265  Sum_probs=86.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PLS   90 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   90 (159)
                      ...||+++|++|||||||+++|.+..+.  ..+.++....+...+.+++.  .+.+||++|++.+....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4579999999999999999999987642  33333433334556667764  47899999986543211        135


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK  141 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  141 (159)
                      +++++++++|||++++.++...   .|+..+.... .++|+++|+||+|+.+
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~~---~~~~~~~~~~~~~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDPA---EIWPEFIARLPAKLPITVVRNKADITG  129 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHH---HHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred             HHhCCEEEEEEECCCCCCHHHH---HHHHHHHHhcccCCCEEEEEECccCCc
Confidence            7899999999999998887632   7777776654 4799999999999964

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.86  E-value=6.5e-22  Score=139.40  Aligned_cols=121  Identities=13%  Similarity=0.205  Sum_probs=82.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCC----------ccccccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAG----------QEDYNRL   86 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g----------~~~~~~~   86 (159)
                      +....++|+++|++|||||||+++|+++.+...+.++.+.+.. .....++   .+.+||+||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            4457899999999999999999999998866555555544332 2233344   489999999          6666666


Q ss_pred             ccccccCC---cEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           87 RPLSYRGA---DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        87 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      +..++..+   +++++|+|++++.++.......|+..     .+.|+++|+||+|+...+.+.
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~  153 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKWD  153 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChHHHH
Confidence            77777666   99999999998877765432134332     468999999999998766553

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.86  E-value=3.5e-21  Score=131.45  Aligned_cols=113  Identities=24%  Similarity=0.184  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-------cccccccccC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY-------NRLRPLSYRG   93 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   93 (159)
                      .||+++|++|+|||||+++|.++.+.  ..+.++........+..++.  .+.+||++|++.+       ...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988743  22333333333445555664  5899999998763       3345567899


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++++++|||++++.+....   .+...+..  .+.|+++|+||+|+.+.
T Consensus        80 ~~~~i~v~d~~~~~~~~~~---~~~~~~~~--~~~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQADY---EVAEYLRR--KGKPVILVATKVDDPKH  123 (161)
T ss_dssp             CSEEEEEEESSSCCCHHHH---HHHHHHHH--HTCCEEEEEECCCSGGG
T ss_pred             CCEEEEEEECCCcccHhHH---HHHHHHHh--cCCCEEEEEECcccccc
Confidence            9999999999986444322   22222222  36899999999999765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.84  E-value=1.8e-21  Score=136.41  Aligned_cols=117  Identities=16%  Similarity=0.140  Sum_probs=85.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceee-eeEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD-NFSANVMVDGRTVNLGLWDTAGQEDYN------RLRPLSYR-   92 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   92 (159)
                      +.++|+++|++|||||||+++|.+..+...+.++... .....+..++  ..+.+||++|++.+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            5689999999999999999999987654333333322 2233455555  569999999998775      23455554 


Q ss_pred             -CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           93 -GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        93 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                       .++++++|+|..+   +....  .|+..+..  .+.|+++|+||+|+...+.+.
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~--~~~~~~~~--~~~piilv~nK~Dl~~~~~~~  131 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNL--YLTLQLME--MGANLLLALNKMDLAKSLGIE  131 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHH--HHHHHHHT--TTCCEEEEEECHHHHHHTTCC
T ss_pred             cCCCEEEEEecchh---HHHHH--HHHHHHHh--cCCCEEEEEEhhhccccccch
Confidence             5999999999875   44444  77777665  478999999999998766554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.83  E-value=3.8e-20  Score=139.65  Aligned_cols=120  Identities=23%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cccc-ceeeeeEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVP-TVFDNFSANVMVDGRTVNLGLWDTAGQED--------YNRLRPL   89 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   89 (159)
                      .+..+|+++|.+|||||||+|+|++.++.. ...+ +...........+  ..++.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            456789999999999999999999988742 2222 2222222222333  35799999999865        3344556


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      +++.+|++++|||++++.+..  .. .+++.+....++.|+++|+||+|+...+.
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~-~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~  134 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DE-LVARALKPLVGKVPILLVGNKLDAAKYPE  134 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HH-HHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred             HHhcCCEEEEEEECCCCCChH--HH-HHHHHHHhhcCCCCEEEEEECcccCCchH
Confidence            789999999999998764443  21 33455665545799999999999976544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.83  E-value=1.1e-20  Score=143.05  Aligned_cols=123  Identities=16%  Similarity=0.123  Sum_probs=89.8

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----------
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPT--DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN----------   84 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------   84 (159)
                      +++...-.|+++|.+|||||||+++|++.++..  ....+...........+ ...++.+|||||...+.          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            344567789999999999999999999988752  22222222222233333 13569999999986544          


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      .....++..+|++++|+|+++..++....  .|+..+..  .+.|+++|+||+|+.+.+.
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~--~~~~~l~~--~~~pvilV~NK~Dl~~~~~  139 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEE--IYQNFIKP--LNKPVIVVINKIDKIGPAK  139 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHTGG--GCCCEEEEEECGGGSSSGG
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHH--HHHHHHHh--cCCCEEEEEECccCCCCHH
Confidence            34566788999999999999988888776  67777776  3689999999999974443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.82  E-value=4.3e-20  Score=136.59  Aligned_cols=119  Identities=19%  Similarity=0.181  Sum_probs=85.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEEECCeEEEEEEEeCCCcccccccc------cccc-
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR------PLSY-   91 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~-   91 (159)
                      .+.++|+++|++|||||||+++|.+..+.....+.. .......+..++  ..+.+||+||...+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            467899999999999999999999877643222222 221222333334  579999999998776532      4555 


Q ss_pred             -cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772           92 -RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL  147 (159)
Q Consensus        92 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~  147 (159)
                       ..+|++++|+|+++.++..     .|...+..  .++|+++|+||+|+.+.+.+..
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~-----~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~  130 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL-----YLLLEILE--MEKKVILAMTAIDEAKKTGMKI  130 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH-----HHHHHHHT--TTCCEEEEEECHHHHHHTTCCB
T ss_pred             hcCCCEEEEEeCCCchhhHH-----HHHHHHHh--cCCCEEEEEECcCCCCccchHH
Confidence             5899999999999866543     45555544  3699999999999987776654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.82  E-value=5.3e-20  Score=134.26  Aligned_cols=126  Identities=17%  Similarity=0.087  Sum_probs=77.3

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc---eeeeeEEEEEECCeEEEEEEEeCCCcc----------
Q 044772           15 TTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPT---VFDNFSANVMVDGRTVNLGLWDTAGQE----------   81 (159)
Q Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~i~D~~g~~----------   81 (159)
                      ........+||+|+|++|||||||+++|++..+.....++   ...........++.  .+.+|||||..          
T Consensus        22 ~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~   99 (239)
T 3lxx_A           22 RQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETS   99 (239)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHH
T ss_pred             cCCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHH
Confidence            3445567899999999999999999999988875443331   12222334455554  58999999942          


Q ss_pred             -cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCcccc
Q 044772           82 -DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        82 -~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r~v~  146 (159)
                       .+...+..+++.++++|+|+|+++.... ..   .|+..+....   ...|++||+||+|+.+.+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~-~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~  164 (239)
T 3lxx_A          100 KEIIRCILLTSPGPHALLLVVPLGRYTEE-EH---KATEKILKMFGERARSFMILIFTRKDDLGDTNLH  164 (239)
T ss_dssp             HHHHHHHHHTTTCCSEEEEEEETTCCSSH-HH---HHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred             HHHHHHHHhcCCCCcEEEEEeeCCCCCHH-HH---HHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence             3444455667889999999998754331 11   3333333221   245999999999987655443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.82  E-value=2.9e-21  Score=135.28  Aligned_cols=115  Identities=20%  Similarity=0.252  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC-----------cccccccccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG-----------QEDYNRLRPLSY   91 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~   91 (159)
                      +||+++|++|||||||+++|.++.+...+.++.... ......+    .+.+||+||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            689999999999999999999998876666644322 2222333    589999999           566777777777


Q ss_pred             cC-CcEEEEEEeCCChhhHHhhhhhhHHHH--------Hhhh--CCCCCEEEEeeCcccccCc
Q 044772           92 RG-ADVFILAFSLISRPSYENISKKKWVPE--------LRHY--APSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        92 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~--------i~~~--~~~~piilv~nK~Dl~~~r  143 (159)
                      +. +++++++|++.+..+|..+.. .|...        +...  ..+.|+++|+||+|+...+
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIK-RWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV  138 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHH-HHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHH-hhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence            77 888888888888888877633 66542        2111  1479999999999998765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.82  E-value=2.7e-20  Score=130.73  Aligned_cols=116  Identities=20%  Similarity=0.198  Sum_probs=80.4

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCC----------cccccc
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAG----------QEDYNR   85 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~   85 (159)
                      .+....+||+++|++|||||||+++|+++.+. .+.++.+..... ....+.   .+.+||++|          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence            34456789999999999999999999988743 334444433322 222333   377999999          555666


Q ss_pred             cccccccCC---cEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           86 LRPLSYRGA---DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        86 ~~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .+..++..+   +++++|+|..+..+........|+...     +.|+++|+||+|+..
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~  147 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK  147 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence            666666554   899999998876444333211455443     689999999999964

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=6.9e-20  Score=135.59  Aligned_cols=122  Identities=15%  Similarity=0.186  Sum_probs=87.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYR-----   92 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   92 (159)
                      .+.++|+++|.+|+|||||+++|++..+  ...+.++........+..++.  .+.+|||||++.+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence            3679999999999999999999998875  333444333333444455554  6999999999887655444433     


Q ss_pred             ----CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC---CCCEEEEeeCcccccCccc
Q 044772           93 ----GADVFILAFSLISRPSYENISKKKWVPELRHYAP---SVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        93 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~r~v  145 (159)
                          .++++++|+++++.. +..... .|+..+.....   ..|+++|+||+|+...+..
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~  169 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDK-QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL  169 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHH-HHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHH-HHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence                789999999998755 554443 67777766542   2499999999999654443

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.81  E-value=3.9e-20  Score=136.67  Aligned_cols=116  Identities=14%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-eeeEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQEDYNR----------LRPLSY   91 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   91 (159)
                      .+|+++|++|||||||+++|.+..+.....++.. ......+..++.  .+.+||+||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998865433233322 223445555664  689999999877664          345566


Q ss_pred             --cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772           92 --RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL  147 (159)
Q Consensus        92 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~  147 (159)
                        .++|++|+|+|+++.+++..+.  .|+   ..  .+.|+++|+||+|+.+.+.+..
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~--~~l---~~--~~~pvilv~NK~Dl~~~~~~~~  130 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLT--SQL---FE--LGKPVVVALNMMDIAEHRGISI  130 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHH--HHH---TT--SCSCEEEEEECHHHHHHTTCEE
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHH--HHH---HH--cCCCEEEEEEChhcCCcCCcHH
Confidence              8999999999999876665443  333   22  2689999999999987665543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.80  E-value=6.1e-20  Score=136.71  Aligned_cols=116  Identities=13%  Similarity=0.138  Sum_probs=83.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR------LRPLSYR-   92 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-   92 (159)
                      ..++|+++|++|||||||+++|.+... ..++.++.-.  .....++. ...+.+||+||+..+..      +...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            357999999999999999999998763 3333222211  22223444 45699999999987752      3455554 


Q ss_pred             -CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           93 -GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        93 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                       .+|++++|||+++.+++.     .|...+..  .++|+++|+||+|+...+.+.
T Consensus        79 ~~~d~vi~V~D~t~~e~~~-----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~  126 (272)
T 3b1v_A           79 QRADSILNVVDATNLERNL-----YLTTQLIE--TGIPVTIALNMIDVLDGQGKK  126 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHHH-----HHHHHHHH--TCSCEEEEEECHHHHHHTTCC
T ss_pred             CCCCEEEEEecCCchHhHH-----HHHHHHHh--cCCCEEEEEEChhhCCcCCcH
Confidence             699999999999866543     55555544  478999999999998766655

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.80  E-value=2.9e-19  Score=142.21  Aligned_cols=119  Identities=18%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PLS   90 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   90 (159)
                      ..++|+++|.+|+|||||+|+|.+...  ...+.++..+.....+.+++  +.+.+|||+|...+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            457899999999999999999998752  33444444444445566666  469999999987665433        447


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           91 YRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      +..+|++++|||++++.++..+.. ..|+..+    .+.|+++|+||+|+...+.+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~  361 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADA  361 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHH
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccch
Confidence            889999999999999888865431 1344333    37999999999999877655

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.80  E-value=3.2e-20  Score=133.42  Aligned_cols=122  Identities=13%  Similarity=-0.006  Sum_probs=80.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEEC-CeEEEEEEEeCCCc----------ccccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVD-GRTVNLGLWDTAGQ----------EDYNR   85 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~----------~~~~~   85 (159)
                      +....++|+|+|.+|+|||||+++|++.........+.+.+. ....... .....+.+|||||.          +.+..
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            445678999999999999999999998863211111111111 1122333 33356899999994          33344


Q ss_pred             cccccccC---CcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           86 LRPLSYRG---ADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        86 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      .+..++..   ++++++|+|..+..+..  .. .|+..+..  .+.|+++|+||+|+...+.
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~-~~~~~l~~--~~~p~i~v~nK~Dl~~~~~  161 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTEL--DR-RMIEWFAP--TGKPIHSLLTKCDKLTRQE  161 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHH--HH-HHHHHHGG--GCCCEEEEEECGGGSCHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHH--HH-HHHHHHHh--cCCCEEEEEeccccCChhh
Confidence            45555544   78899999998753322  22 55555554  4689999999999976544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.79  E-value=1.2e-19  Score=135.25  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQEDYNRL----------RPL   89 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~   89 (159)
                      +.++|+++|++|+|||||+++|.+..+...+.++. .......+..++.  .+.+||+||+..+...          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence            35899999999999999999999887543333332 2222334444443  5789999998876632          223


Q ss_pred             cc--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           90 SY--RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        90 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ++  ..+|++|+|+|+++.++...+.  .++.   ..  ++|+++|+||+|+.+.+.+.
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~--~~l~---~~--~~p~ivv~NK~Dl~~~~~~~  131 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLT--LQLL---EL--GIPCIVALNMLDIAEKQNIR  131 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHH--HHHH---HH--TCCEEEEEECHHHHHHTTEE
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHH--HHHH---hc--CCCEEEEEECccchhhhhHH
Confidence            33  7899999999999876655433  3333   32  68999999999997765544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=2.8e-19  Score=132.77  Aligned_cols=120  Identities=14%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccc-------cc-
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRP-------LS-   90 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~-   90 (159)
                      ..++|+++|.+|+|||||+++|++..+.  ..+.++...........++  ..+.+|||||...+.....       .+ 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            5789999999999999999999988753  2223332222222333333  5699999999876653322       11 


Q ss_pred             -ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC-C--CCEEEEeeCcccccCcc
Q 044772           91 -YRGADVFILAFSLISRPSYENISKKKWVPELRHYAP-S--VPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        91 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~r~  144 (159)
                       ...+|++++|||++.. ++..... .|+..+..... +  .|+++|+||+|+...+.
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~-~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDK-LVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHH-HHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHH-HHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence             3469999999999763 4554444 77777766532 2  69999999999975543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.78  E-value=2e-19  Score=137.30  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=66.9

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHhhhhhhHHHHHhhhC--CCCCEEEEee
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SRPSYENISKKKWVPELRHYA--PSVPIVLVGT  135 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~i~~~~--~~~piilv~n  135 (159)
                      ..+.+++||++|++.++..|.+|+++++++|+|||++          +..+|.+..  .|+..+....  .++|++|++|
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~--~~~~~i~~~~~~~~~piiLv~N  236 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI--AVFKDIMTNEFLKGAVKLIFLN  236 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH--HHHHHHHHCGGGTTSEEEEEEE
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHH--HHHHHHhhhhccCCCeEEEEEE
Confidence            3467999999999999999999999999999999998          677888877  7777776543  6899999999


Q ss_pred             CcccccCcccccc
Q 044772          136 KLDLRKDRQFHLD  148 (159)
Q Consensus       136 K~Dl~~~r~v~~~  148 (159)
                      |+|+.+++....+
T Consensus       237 K~DL~~eki~~~~  249 (340)
T 4fid_A          237 KMDLFEEKLTKVP  249 (340)
T ss_dssp             CHHHHHHHHHHSC
T ss_pred             CchhhhhhcCcch
Confidence            9999876664433

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.78  E-value=4.3e-19  Score=131.84  Aligned_cols=119  Identities=19%  Similarity=0.105  Sum_probs=83.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR------LRPLSY--   91 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   91 (159)
                      +.++|+++|++|||||||+++|.+..+...+.++..... ...+..++.  .+.+||+||+..+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            358999999999999999999998876433333333222 334455554  489999999987765      445555  


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHL  147 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~  147 (159)
                      .++|++++|+|.++.+...     .|...+... ...|+++|+||+|+.+.+.+..
T Consensus        80 ~~~d~vi~v~D~~~~~~~~-----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~  129 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMRNL-----FLTLELFEM-EVKNIILVLNKFDLLKKKGAKI  129 (271)
T ss_dssp             TCCSEEEEEEEGGGHHHHH-----HHHHHHHHT-TCCSEEEEEECHHHHHHHTCCC
T ss_pred             cCCcEEEEEecCCcchhhH-----HHHHHHHhc-CCCCEEEEEEChhcCcccccHH
Confidence            6899999999998754222     444444332 2389999999999876655543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.78  E-value=1.1e-19  Score=143.46  Aligned_cols=120  Identities=17%  Similarity=0.190  Sum_probs=86.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE----------DYNRLR   87 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   87 (159)
                      ...+||+++|.+|||||||+++|++..+.  ..+.++..+.....+..++.  .+.+|||+|+.          .|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35689999999999999999999988753  34444444444445566665  48999999973          333222


Q ss_pred             c-ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           88 P-LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        88 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      . .+++.+|++++|||+++..+++..   .|+..+..  .+.|+++|+||+|+.+.+.++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~---~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~  305 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK---RIAGYAHE--AGKAVVIVVNKWDAVDKDEST  305 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH---HHHHHHHH--TTCEEEEEEECGGGSCCCTTH
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH---HHHHHHHH--cCCcEEEEEECccCCCcchHH
Confidence            2 367889999999999998887765   56666654  468999999999998766654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.78  E-value=1.4e-18  Score=128.10  Aligned_cols=120  Identities=17%  Similarity=0.116  Sum_probs=75.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCcccc--eeeeeEEEEEECCeEEEEEEEeCCCccccccccc------
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNT-FPTDYVPT--VFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRP------   88 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~------   88 (159)
                      +....++|+|+|++|||||||+++|++.. +...+.++  ........+..++  ..+.+|||||...+.....      
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            34567999999999999999999999877 55444443  2222233444555  3589999999876543322      


Q ss_pred             -----ccccCCcEEEEEEeCCChhhHHhhhh--hhHHHHHhhhCCCCCEEEEee-CcccccC
Q 044772           89 -----LSYRGADVFILAFSLISRPSYENISK--KKWVPELRHYAPSVPIVLVGT-KLDLRKD  142 (159)
Q Consensus        89 -----~~~~~~~~~i~v~d~~~~~s~~~~~~--~~~~~~i~~~~~~~piilv~n-K~Dl~~~  142 (159)
                           .+++.+|++|+|||+++   +.....  ..|+..+.......|.++|.| |+|+.+.
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred             HHHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence                 26789999999999985   222221  033333322111345555555 9999754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.77  E-value=4.8e-19  Score=134.69  Aligned_cols=73  Identities=16%  Similarity=0.254  Sum_probs=61.9

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeC
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SRPSYENISKKKWVPELRHYA--PSVPIVLVGTK  136 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK  136 (159)
                      .+.+++||++|++.++..|.+|+++++++|+|||++          +..+|.+..  .|+..+....  .++|++|++||
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~--~~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK--ALFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH--HHHHHHHTSGGGTTCEEEEEEEC
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH--HHHHHHhhhhccCCceEEEEEEC
Confidence            377999999999999999999999999999999665          566777666  7777776543  58999999999


Q ss_pred             cccccCc
Q 044772          137 LDLRKDR  143 (159)
Q Consensus       137 ~Dl~~~r  143 (159)
                      +|+.+.|
T Consensus       244 ~DL~~~k  250 (327)
T 3ohm_A          244 KDLLEEK  250 (327)
T ss_dssp             HHHHHHH
T ss_pred             chhhhhh
Confidence            9998766

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.76  E-value=2.9e-18  Score=135.41  Aligned_cols=112  Identities=21%  Similarity=0.194  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRPLSY   91 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   91 (159)
                      .+|+++|.+|||||||+|+|++++..  ..+.++..+.....+..++.  .+.+|||+|.+..         ......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987742  33333333334455666665  4789999997642         23445678


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +.+|++++|||+.+..++.......|+..     .+.|++||+||+|+.+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~  124 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAENLR  124 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCSHH
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCCcc
Confidence            99999999999987555433211144432     2689999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=2.9e-19  Score=141.69  Aligned_cols=124  Identities=18%  Similarity=0.205  Sum_probs=87.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG----------QEDYNRL   86 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   86 (159)
                      ....+||+++|.+|+|||||+++|++...  ...+.++..+.....+..++.  .+.+|||+|          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            34578999999999999999999997652  234444444444555666665  589999999          5556554


Q ss_pred             cc-ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccC
Q 044772           87 RP-LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus        87 ~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      .. .+++.++++|+|+|+++..+..  .. .|+..+..  .+.|++||+||+|+.+.++++.++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~--~~-~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~  328 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQ--DK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKE  328 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHH--HH-HHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHH
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHH--HH-HHHHHHHH--cCCCEEEEEEChhcCCCchHHHHH
Confidence            44 3678999999999998754332  22 55555554  468999999999998877765543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.75  E-value=2e-18  Score=132.79  Aligned_cols=73  Identities=16%  Similarity=0.268  Sum_probs=63.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeC
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------RPSYENISKKKWVPELRHY--APSVPIVLVGTK  136 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK  136 (159)
                      .+.+++||++|++.+...|..|+++++++|||||+++          ..+|.+..  .|+..+...  ..++|++|++||
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~--~~~~~i~~~~~~~~~piiLv~NK  269 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM--KLFDSICNNKWFTDTSIILFLNK  269 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH--HHHHHHHTCGGGTTSEEEEEEEC
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH--HHHHHHHcCccccCCcEEEEEEC
Confidence            4679999999999999999999999999999999998          45677777  788887764  268999999999


Q ss_pred             cccccCc
Q 044772          137 LDLRKDR  143 (159)
Q Consensus       137 ~Dl~~~r  143 (159)
                      +|+.+++
T Consensus       270 ~DL~~~k  276 (353)
T 1cip_A          270 KDLFEEK  276 (353)
T ss_dssp             HHHHHHH
T ss_pred             cCchhhh
Confidence            9997544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.75  E-value=5.2e-19  Score=140.25  Aligned_cols=128  Identities=19%  Similarity=0.126  Sum_probs=74.3

Q ss_pred             CCCCCCCCCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCC--------c
Q 044772           10 SSSTTTTTTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG--------Q   80 (159)
Q Consensus        10 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g--------~   80 (159)
                      |++..+........+|+++|.+|||||||+++|.+..+... ..+.+.+. ............+.+|||+|        +
T Consensus        11 ~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~   89 (456)
T 4dcu_A           11 SSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFL   89 (456)
T ss_dssp             ------------CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCH
T ss_pred             cCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHH
Confidence            33344444555678999999999999999999998765311 11222221 11223333345699999999        6


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +.+......+++.+|++|+|+|..+.  +..... .+...+.+  .+.|++||+||+|+.+.+
T Consensus        90 ~~~~~~~~~~~~~ad~il~VvD~~~~--~~~~d~-~l~~~l~~--~~~pvilV~NK~D~~~~~  147 (456)
T 4dcu_A           90 AQIRQQAEIAMDEADVIIFMVNGREG--VTAADE-EVAKILYR--TKKPVVLAVNKLDNTEMR  147 (456)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEESSSC--SCHHHH-HHHHHHTT--CCSCEEEEEECC------
T ss_pred             HHHHHHHHhhHhhCCEEEEEEeCCCC--CChHHH-HHHHHHHH--cCCCEEEEEECccchhhh
Confidence            66666777888999999999998753  333331 33333333  478999999999987544

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.75  E-value=2.3e-18  Score=135.23  Aligned_cols=120  Identities=23%  Similarity=0.252  Sum_probs=81.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc-------c
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR-------P   88 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~   88 (159)
                      +....++|+++|+.|+|||||+++|++..+.  ..+.++........+...+. ..+.+|||+|++.+....       .
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence            3456789999999999999999999988763  23333333333445555554 268999999998876553       3


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      .++..+|++|+|||+.......     .|+..+...  ++|+++|+||+|+...+..
T Consensus       109 ~~l~~aD~vllVvD~~~~~~~~-----~~l~~l~~~--~~piIvV~NK~Dl~~~~~~  158 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTPYED-----DVVNLFKEM--EIPFVVVVNKIDVLGEKAE  158 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCHHHH-----HHHHHHHHT--TCCEEEECCCCTTTTCCCT
T ss_pred             HHHhcCCEEEEEEeCCChHHHH-----HHHHHHHhc--CCCEEEEEeCcCCCCccHH
Confidence            3788999999999984332222     676666654  6899999999999876653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.74  E-value=1.4e-18  Score=133.65  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHhhhhhhHHHHHhhh--CCCCCEEEEee
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SRPSYENISKKKWVPELRHY--APSVPIVLVGT  135 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~i~~~--~~~~piilv~n  135 (159)
                      ..+.+++||++|++.+...|..|+++++++|+|||++          +..+|.++.  .|+..+...  .+++|++||||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~--~~~~~i~~~~~~~~~piiLvgN  258 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK--ELFDWVLKQPCFEKTSFMLFLN  258 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH--HHHHHHHTCGGGSSCEEEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH--HHHHHHHhccccCCCeEEEEEE
Confidence            5688999999999999999999999999999999998          778898887  888887764  36899999999


Q ss_pred             CcccccCcc
Q 044772          136 KLDLRKDRQ  144 (159)
Q Consensus       136 K~Dl~~~r~  144 (159)
                      |+|+.+++.
T Consensus       259 K~DL~~~k~  267 (354)
T 2xtz_A          259 KFDIFEKKV  267 (354)
T ss_dssp             CHHHHHHHT
T ss_pred             Ccchhhhhc
Confidence            999976554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.73  E-value=7.2e-18  Score=133.76  Aligned_cols=117  Identities=22%  Similarity=0.273  Sum_probs=78.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PLS   90 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   90 (159)
                      ..++|+++|++|+|||||+|+|.+..+  .....++..+.....+.+++.  .+.+|||+|...+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence            457899999999999999999997643  333334443333445566664  57999999976554332        346


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      +..+|++++|||.+++.++...   .|+..+.    +.|+++|+||+|+...+.+.
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~~---~i~~~l~----~~piivV~NK~Dl~~~~~~~  349 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGDQ---EIYEQVK----HRPLILVMNKIDLVEKQLIT  349 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHHH---HHHHHHT----TSCEEEEEECTTSSCGGGST
T ss_pred             hhcCCEEEEEeccCCCCCHHHH---HHHHhcc----CCcEEEEEECCCCCcchhhH
Confidence            7899999999999987666542   5666554    37999999999998766654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.73  E-value=2.3e-18  Score=135.82  Aligned_cols=115  Identities=20%  Similarity=0.197  Sum_probs=71.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc--------cccccccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE--------DYNRLRPLSY   91 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~   91 (159)
                      ..+|+++|.+|||||||+++|.+..+.  ....++..+....  ........+.+|||+|++        .+...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~--~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEE--ECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEE--EEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999987653  2222222121122  223223468999999985        4555667788


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +.+|++|+|+|+.+..++...   .+...+..  .+.|++||+||+|+...+
T Consensus        81 ~~ad~il~vvD~~~~~~~~d~---~~~~~l~~--~~~pvilv~NK~D~~~~~  127 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAADE---EVAKILYR--TKKPVVLAVNKLDNTEMR  127 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHHH---HHHHHHTT--CCSCEEEEEECCCC----
T ss_pred             HhCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccCccch
Confidence            999999999999876665432   33333332  478999999999997543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.72  E-value=5.8e-18  Score=134.88  Aligned_cols=112  Identities=24%  Similarity=0.259  Sum_probs=84.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE-DYNRL--------RPLS   90 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~--------~~~~   90 (159)
                      .++|+++|.+|+|||||+|+|.+.++  ...+..|..+.....+.+++.  .+.+|||+|.. .+...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            48999999999999999999998753  445555555555556667764  58999999987 55432        2346


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +..+|++|+|||++++.++...   .+++.+    .+.|+++|+||+|+...
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~---~il~~l----~~~piivV~NK~DL~~~  365 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR---KILERI----KNKRYLVVINKVDVVEK  365 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH---HHHHHH----TTSSEEEEEEECSSCCC
T ss_pred             hhcccEEEEEecCCCCCCHHHH---HHHHHh----cCCCEEEEEECcccccc
Confidence            7889999999999988777654   333433    36899999999999653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.71  E-value=2.2e-17  Score=127.31  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=57.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeC
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------RPSYENISKKKWVPELRHY--APSVPIVLVGTK  136 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK  136 (159)
                      .+.+++||++|++.+...|.+||++++++|||||+++          ..+|.++.  .|+..+...  ..++|++|++||
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~--~~~~~i~~~~~~~~~piILv~NK  277 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL--NIFETIVNNRVFSNVSIILFLNK  277 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH--HHHHHHHTCGGGTTSEEEEEEEC
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH--HHHHHHhcchhhCCCCEEEEEEC
Confidence            3679999999999999999999999999999999998          67888887  788887764  268999999999


Q ss_pred             cccccCc
Q 044772          137 LDLRKDR  143 (159)
Q Consensus       137 ~Dl~~~r  143 (159)
                      +|+.+++
T Consensus       278 ~DL~~~k  284 (362)
T 1zcb_A          278 TDLLEEK  284 (362)
T ss_dssp             HHHHHHH
T ss_pred             hhhhhhh
Confidence            9997544

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=4.8e-18  Score=131.08  Aligned_cols=123  Identities=16%  Similarity=0.179  Sum_probs=71.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCcc--------cceeeee-EEEEEECCeEEEEEEEeCCCc-------cc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT-FPTDYV--------PTVFDNF-SANVMVDGRTVNLGLWDTAGQ-------ED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~   82 (159)
                      ...++|+|+|++|+|||||+++|++.. +...+.        ++.+..+ ...+..++..+.+.+||++|.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987654 333322        3333222 222334566678999999998       55


Q ss_pred             cccccc-------ccccCC-----------cEEEEEEeCCC-hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           83 YNRLRP-------LSYRGA-----------DVFILAFSLIS-RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        83 ~~~~~~-------~~~~~~-----------~~~i~v~d~~~-~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +..++.       .|+..+           ++.+++|++++ ..++..+.. .|+..+.   .++|+++|+||+|+...+
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~---~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH---NKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC---S-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc---cCCCEEEEEECCCCCCHH
Confidence            655554       444333           33346666664 456666654 5665553   578999999999998766


Q ss_pred             ccc
Q 044772          144 QFH  146 (159)
Q Consensus       144 ~v~  146 (159)
                      ++.
T Consensus       191 ev~  193 (361)
T 2qag_A          191 ERE  193 (361)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.71  E-value=6.9e-19  Score=141.52  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      +..+|+++|++++|||||+++|.+..+...+.++....+ ...+..++ ...+.+|||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            567899999999999999999997765444333332222 11222211 1258999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |||+++....+...   ++..+..  .++|++|++||+|+.+.
T Consensus        82 VVDa~dg~~~qt~e---~l~~~~~--~~vPiIVViNKiDl~~~  119 (537)
T 3izy_P           82 VVAADDGVMKQTVE---SIQHAKD--AHVPIVLAINKCDKAEA  119 (537)
T ss_dssp             ECBSSSCCCHHHHH---HHHHHHT--TTCCEEECCBSGGGTTT
T ss_pred             EEECCCCccHHHHH---HHHHHHH--cCCcEEEEEeccccccc
Confidence            99999865554442   2232322  36899999999999753

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.70  E-value=1.4e-17  Score=132.84  Aligned_cols=127  Identities=13%  Similarity=0.040  Sum_probs=79.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcc----------------------c-----ceeeee-EEEEEECCeE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYV----------------------P-----TVFDNF-SANVMVDGRT   69 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~----------------------~-----t~~~~~-~~~~~~~~~~   69 (159)
                      ...+||+++|.+++|||||+++|++....  ..+.                      .     ..+.+. .....++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            45689999999999999999999865211  0000                      0     001111 1111223334


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhh---hHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKK---KWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ..+.+||+||++.|......++..+|++|+|+|+++..++..+...   .....+.......|++||+||+|+.+.++..
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence            5799999999999998888999999999999999987654432100   1122222222335799999999998755443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.70  E-value=2.1e-17  Score=122.94  Aligned_cols=118  Identities=16%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc-------ccceeeee-EEEEEECCeEEEEEEEeCCCccccc-----
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTF-PTDY-------VPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYN-----   84 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-----   84 (159)
                      ....++|+++|.+|+|||||+|+|++... ...+       .+|.+..+ ...+..++..+.+.+|||||...+.     
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            45679999999999999999999886654 3333       34444333 2233345555789999999973221     


Q ss_pred             --ccc-------cccc-------------cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           85 --RLR-------PLSY-------------RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        85 --~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                        .+.       ..|+             ..+|+++++++.++. .+..... .++..+..   ++|+++|+||+|+..
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~-~~l~~l~~---~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDI-EFMKRLHE---KVNIIPLIAKADTLT  158 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHH-HHHHHHTT---TSCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHH-HHHHHHhc---cCCEEEEEeccCCCC
Confidence              111       1111             237788888876643 2333332 56666655   799999999999864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.70  E-value=1.3e-16  Score=122.95  Aligned_cols=122  Identities=17%  Similarity=0.104  Sum_probs=84.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR---------LRPL   89 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~   89 (159)
                      ...++++++|.+|||||||+++|.+..+.. .+..+........+..++  ..+.+||++|......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            356799999999999999999999876431 111111111122223333  5689999999754321         1112


Q ss_pred             cccCCcEEEEEEeCCChh--hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           90 SYRGADVFILAFSLISRP--SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      +...++++++|+|++++.  ++....  .|+..+.....+.|+++|+||+|+...+.+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~--~~~~~i~~~~~~~piilV~NK~Dl~~~~~~  298 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQI--HLFEEVHGEFKDLPFLVVINKIDVADEENI  298 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHH--HHHHHHHHHTTTSCEEEEECCTTTCCHHHH
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHH--HHHHHHHHhcCCCCEEEEEECcccCChHHH
Confidence            345699999999998876  566555  888888776668999999999999765544

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.70  E-value=4.6e-17  Score=127.22  Aligned_cols=123  Identities=14%  Similarity=-0.001  Sum_probs=85.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc---cceeeee----EEEE---------EE---CCeEEEEEEEeCC
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV---PTVFDNF----SANV---------MV---DGRTVNLGLWDTA   78 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~----~~~~---------~~---~~~~~~~~i~D~~   78 (159)
                      .....++|+++|++++|||||+++|.+........   .+.....    ....         ..   ......+.+||+|
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            34567899999999999999999999754332100   0000000    0000         00   1123679999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      |++.|......++..+|++|+|+|+++..++....  .|+..+.... ..|+++|+||+|+.+..
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~--~~~~~~~~~~-~~~iivviNK~Dl~~~~  145 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR--EHFVALGIIG-VKNLIIVQNKVDVVSKE  145 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH--HHHHHHHHHT-CCCEEEEEECGGGSCHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH--HHHHHHHHcC-CCCEEEEEECccccchH
Confidence            99999988888999999999999999876565555  5655554433 35899999999997644

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.69  E-value=1.3e-17  Score=127.71  Aligned_cols=116  Identities=22%  Similarity=0.260  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcc-cceeeeeEEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYV-PTVFDNFSANVMVDGRTVNLGLWDTAGQED----YNRLRPLSY---RGA   94 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~   94 (159)
                      +|+|+|.+|||||||+++|.+.+.. ..+. .|..... ..+.+++. ..+.+||+||...    +..+...++   ..+
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~-g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL-GMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE-EEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE-EEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            6889999999999999999977632 2332 2222222 23444432 3589999999633    333434444   459


Q ss_pred             cEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccCc
Q 044772           95 DVFILAFSLIS---RPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        95 ~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~r  143 (159)
                      +++|+|+|+++   ++.+..+.  .|+.++..+.   .+.|++||+||+|+...+
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~--~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~  290 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYL--TINQELSEYNLRLTERPQIIVANKMDMPEAA  290 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHH--HHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred             cEEEEEEECCcccccChHHHHH--HHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence            99999999998   77888887  8888888775   479999999999997543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.69  E-value=8.9e-17  Score=126.86  Aligned_cols=118  Identities=24%  Similarity=0.236  Sum_probs=78.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR-----------   87 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------   87 (159)
                      ..+||+++|++|||||||+++|++...  ...+.++..+.....+.+++.  .+.+||++|........           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            468999999999999999999998764  233333433333455667776  47899999974432211           


Q ss_pred             -cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           88 -PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        88 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                       ..++..++++++++|+.+..++...   .+...+..  .+.|+++|+||+|+.+.+.+
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~---~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~  310 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ---RMAGLMER--RGRASVVVFNKWDLVVHREK  310 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH---HHHHHHHH--TTCEEEEEEECGGGSTTGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccCCCchhh
Confidence             2345679999999999876665542   33333332  36899999999999876653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.69  E-value=7.8e-17  Score=131.13  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=83.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----cccce------eeee---EEEEEE---CCeEEEEEEEeCCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN--TFPTD-----YVPTV------FDNF---SANVMV---DGRTVNLGLWDTAGQ   80 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~-----~~~t~------~~~~---~~~~~~---~~~~~~~~i~D~~g~   80 (159)
                      ....+|+++|+.++|||||+++|+..  .+...     +..+.      +.+.   ...+.+   ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            46789999999999999999999853  22110     00000      0000   011211   455688999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ..|...+..++..+|++|+|+|+++..+++...  .|.....   .++|+++|+||+|+...+
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~--~~~~a~~---~~ipiIvviNKiDl~~a~  141 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVA--NFWKAVE---QDLVIIPVINKIDLPSAD  141 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHH--HHHHHHH---TTCEEEEEEECTTSTTCC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHH---CCCCEEEEEeccCccccC
Confidence            999988888899999999999999887777765  6655443   378999999999997643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.68  E-value=1.4e-16  Score=120.08  Aligned_cols=114  Identities=17%  Similarity=0.110  Sum_probs=77.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE---------DYNRLRP   88 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~   88 (159)
                      .+..+|+++|++|+|||||+++|++.++.  .....+........+..++  ..+.+|||||..         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            35568999999999999999999988753  1111122221222233333  468999999987         3444556


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .++..+|++++|+|.++   +....  .|+..... ..+.|+++++||+|+..
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~--~~i~~~l~-~~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDD--EMVLNKLR-EGKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHH--HHHHHHHH-SSSSCEEEEEESTTTCC
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHH--HHHHHHHH-hcCCCEEEEEECcccCc
Confidence            78899999999999876   33333  33322222 13689999999999976

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.68  E-value=4.3e-17  Score=132.77  Aligned_cols=118  Identities=15%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----Ccccc------eeeee-E--EEEEE---CCeEEEEEEEeCCCcc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNT--FPT-----DYVPT------VFDNF-S--ANVMV---DGRTVNLGLWDTAGQE   81 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~--~~~-----~~~~t------~~~~~-~--~~~~~---~~~~~~~~i~D~~g~~   81 (159)
                      ...+|+++|+.++|||||+++|+...  +..     .+..+      .+.+. .  ..+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998632  111     00011      11111 1  11222   4556889999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      .|...+..++..+|++|+|+|+++..+++...  .|...+.   .++|+++|+||+|+...+
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~--~~~~~~~---~~ipiIvViNKiDl~~a~  139 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLA--NCYTAME---MDLEVVPVLNKIDLPAAD  139 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHH--HHHHHHH---TTCEEEEEEECTTSTTCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH--HHHHHHH---CCCCEEEeeeccCccccc
Confidence            99998889999999999999999877777665  6655543   368999999999997643

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.67  E-value=1.4e-16  Score=129.72  Aligned_cols=114  Identities=19%  Similarity=0.165  Sum_probs=80.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----ccceeeeeEEEEE-------------ECCeEEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY----VPTVFDNFSANVM-------------VDGRTVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-------------~~~~~~~~~i~D~~g~~~   82 (159)
                      .+..+|+++|++++|||||+++|.+..+....    ..+.+..+.....             .+.....+.+|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            45679999999999999999999876543221    1122211110000             000112489999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |..++..++..+|++|+|||+++   ++++..+.   ++.   .  .++|+++++||+|+..
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~---~l~---~--~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN---ILR---M--YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH---HHH---H--TTCCEEEEEECGGGST
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH---HHH---H--cCCeEEEEeccccccc
Confidence            99999999999999999999998   66665442   221   1  3689999999999965

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.66  E-value=7.3e-16  Score=118.99  Aligned_cols=115  Identities=23%  Similarity=0.176  Sum_probs=77.3

Q ss_pred             eE-EEEEcCCCCCHHHHHHHHhcCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcc---------cccccccccc
Q 044772           23 IK-CVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQE---------DYNRLRPLSY   91 (159)
Q Consensus        23 ~k-i~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~   91 (159)
                      ++ |+++|.+|+|||||+++|.+..+.. .+..+.-+.....+.+++.  .+.+||++|.-         .|...+ ..+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SEA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence            44 9999999999999999999877532 2222222233456667773  57999999962         122222 246


Q ss_pred             cCCcEEEEEEeCCChh--hHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccC
Q 044772           92 RGADVFILAFSLISRP--SYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~  142 (159)
                      ..+|.+++|+|++++.  .+..+.  .|.+.+.... .+.|+++|+||+|+...
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKING  307 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence            7899999999998876  455444  5555555443 57899999999999654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.66  E-value=4.7e-16  Score=122.79  Aligned_cols=120  Identities=12%  Similarity=0.061  Sum_probs=77.4

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCc-----------------------------ccceeeeeEEEEEEC
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTF--PTDY-----------------------------VPTVFDNFSANVMVD   66 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~-----------------------------~~t~~~~~~~~~~~~   66 (159)
                      .....++|+++|++++|||||+++|+...-  ....                             .+..... .....+.
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid-~~~~~~~   91 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVE-VGRAYFE   91 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEE-EeEEEEe
Confidence            345678999999999999999999965421  1100                             0001110 1111222


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---HHhhh-hhhHHHHHhhhCCCCC-EEEEeeCcccc
Q 044772           67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS---YENIS-KKKWVPELRHYAPSVP-IVLVGTKLDLR  140 (159)
Q Consensus        67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~-~~~~~~~i~~~~~~~p-iilv~nK~Dl~  140 (159)
                      .....+.+||+||++.|......++..+|++|+|+|+++...   |.... ....+..+..  .++| +++++||+|+.
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDP  168 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCc
Confidence            233579999999999998888888999999999999987542   11110 0011211111  2566 99999999985

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.66  E-value=3.2e-17  Score=131.97  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=82.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCc------ccceeeeeEEEEEECCeEEEEEEEe
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-----------------TDY------VPTVFDNFSANVMVDGRTVNLGLWD   76 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------~~~------~~t~~~~~~~~~~~~~~~~~~~i~D   76 (159)
                      .+..+|+|+|++|+|||||+++|+.....                 ..+      ...........+..++  +.+++||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            46789999999999999999999721110                 000      0000001112233333  5699999


Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        77 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |||+..|......++..+|++|+|+|+++...+....  .| ..+..  .++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~-~~~~~--~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LM-EVCRL--RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HH-HHHHT--TTCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HH-HHHHH--cCCCEEEEEeCCCCccc
Confidence            9999999998899999999999999999876666654  44 33332  36899999999999654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.66  E-value=4.6e-17  Score=128.40  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=80.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCc-------------------------------ccceeeeeEEEEEEC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN--TFPTDY-------------------------------VPTVFDNFSANVMVD   66 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~-------------------------------~~t~~~~~~~~~~~~   66 (159)
                      ...+||+++|+.++|||||+++|+..  .+....                               ..|....+   ..++
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~---~~~~   80 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF---MRFE   80 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------CEEE
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE---EEEe
Confidence            45689999999999999999999864  332110                               01111111   1223


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-----CC-CCEEEEeeCcccc
Q 044772           67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PS-VPIVLVGTKLDLR  140 (159)
Q Consensus        67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~-~piilv~nK~Dl~  140 (159)
                      .....+.+||+||++.|......++..+|++|+|+|+++ .+|+...  .|.....++.     .+ .|+++++||+|+.
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~--~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~  157 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGM--SVEGQTREHIILAKTMGLDQLIVAVNKMDLT  157 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHH--STTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccccccc--ccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence            333569999999999999888889999999999999998 6777554  3333322221     13 4699999999997


Q ss_pred             c
Q 044772          141 K  141 (159)
Q Consensus       141 ~  141 (159)
                      +
T Consensus       158 ~  158 (435)
T 1jny_A          158 E  158 (435)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.66  E-value=4e-17  Score=130.34  Aligned_cols=115  Identities=16%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      .+..+|+++|+.++|||||+++|.+..+.....+...... ...+..++  ..+.+|||||++.|..++..++..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3668999999999999999999987655433222111111 11222233  35899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +|||+++....+..   .++..+..  .++|+++++||+|+..
T Consensus        80 LVVda~~g~~~qT~---e~l~~~~~--~~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           80 LVVAADDGVMPQTI---EAIQHAKA--AQVPVVVAVNKIDKPE  117 (501)
T ss_dssp             EEEETTTBSCTTTH---HHHHHHHH--TTCCEEEEEECSSSST
T ss_pred             EEeecccCccHHHH---HHHHHHHh--cCceEEEEEEeccccc
Confidence            99999874322222   22222222  3689999999999975

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.65  E-value=1.7e-15  Score=118.58  Aligned_cols=117  Identities=17%  Similarity=0.115  Sum_probs=78.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccc--ceeeeeEE-EEEE-------------C--C----eEEEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT---FPTDYVP--TVFDNFSA-NVMV-------------D--G----RTVNLGL   74 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~i   74 (159)
                      ...++|+++|+.++|||||+++|.+..   +...+.+  |....+.. .+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            456899999999999999999998543   2222222  33333322 1111             1  1    1367999


Q ss_pred             EeCCCcccccccccccccCCcEEEEEEeCCCh----hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           75 WDTAGQEDYNRLRPLSYRGADVFILAFSLISR----PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        75 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ||+||++.|.......+..+|++|+|+|+++.    +++..+.  .    +.. ....|+++++||+|+.+.+
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~--~----~~~-l~~~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM--A----LEI-LGIDKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH--H----HHH-TTCCCEEEEEECTTSSCTT
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH--H----HHH-cCCCeEEEEEEccCCCCHH
Confidence            99999999988777778899999999999853    3333332  1    111 2235899999999997644

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.65  E-value=5.6e-16  Score=115.98  Aligned_cols=122  Identities=21%  Similarity=0.236  Sum_probs=78.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC------ccccee--------------------eee-------------
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD------YVPTVF--------------------DNF-------------   59 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~------~~~t~~--------------------~~~-------------   59 (159)
                      ....++|+|+|.+|||||||+++|++..+.+.      ..|+..                    ..+             
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            34568999999999999999999999887422      122200                    000             


Q ss_pred             -----------EEEEEE-CCeEEEEEEEeCCCcc-------------cccccccccccCCcEEE-EEEeCCChhhHHhhh
Q 044772           60 -----------SANVMV-DGRTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFI-LAFSLISRPSYENIS  113 (159)
Q Consensus        60 -----------~~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~  113 (159)
                                 ...+.+ ......+.+|||||..             .+..+...++..++.+| +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       000000 0012469999999964             23345566788888776 799998754433322


Q ss_pred             hhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772          114 KKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus       114 ~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                        .|+..+..  .+.|+++|+||+|+.+.+.
T Consensus       183 --~~~~~~~~--~~~~~i~V~NK~Dl~~~~~  209 (299)
T 2aka_B          183 --KIAKEVDP--QGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             --HHHHHHCT--TCSSEEEEEECGGGSCTTC
T ss_pred             --HHHHHhCC--CCCeEEEEEEccccCCCCc
Confidence              45554433  4689999999999976544

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.65  E-value=3.5e-16  Score=124.81  Aligned_cols=113  Identities=23%  Similarity=0.172  Sum_probs=78.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCcc--cceeeeeEEEEEECCeEEEEEEEeCCCccccccccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNT-------FPTDYV--PTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRP   88 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   88 (159)
                      ...+.++|+++|+.++|||||+++|.+..       +.....  .|....+. .+..++  ..+.+||+||++.|.....
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~-~~~~~~--~~i~iiDtPGh~~~~~~~~   91 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFS-AFKLEN--YRITLVDAPGHADLIRAVV   91 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCC-EEEETT--EEEEECCCSSHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceE-EEEECC--EEEEEEECCChHHHHHHHH
Confidence            34568999999999999999999999766       111111  12222222 233344  5699999999999988888


Q ss_pred             ccccCCcEEEEEEeCCC---hhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           89 LSYRGADVFILAFSLIS---RPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .++..+|++|+|+|+++   ++++..+      ..+..  .++|+++|+||+|+.+
T Consensus        92 ~~~~~aD~~ilVvda~~g~~~qt~e~l------~~~~~--~~ip~IvviNK~Dl~~  139 (482)
T 1wb1_A           92 SAADIIDLALIVVDAKEGPKTQTGEHM------LILDH--FNIPIIVVITKSDNAG  139 (482)
T ss_dssp             HHTTSCCEEEEEEETTTCSCHHHHHHH------HHHHH--TTCCBCEEEECTTSSC
T ss_pred             HHHhhCCEEEEEEecCCCccHHHHHHH------HHHHH--cCCCEEEEEECCCccc
Confidence            88999999999999987   3333332      22222  2588899999999975

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.65  E-value=3.4e-16  Score=124.45  Aligned_cols=118  Identities=16%  Similarity=0.071  Sum_probs=68.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CcccceeeeeEEEEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGN--TFPT-------------------------------DYVPTVFDNFSANVMV   65 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~   65 (159)
                      ....++|+++|+.++|||||+++|+..  .+..                               ....|+...+. .+..
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~-~~~~  118 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA-YFET  118 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC-EEEC
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeE-EEec
Confidence            346789999999999999999999742  2210                               00011111111 1222


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh---hhHHhhhhhhHHHHHhhhC-CCCC-EEEEeeCcccc
Q 044772           66 DGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISR---PSYENISKKKWVPELRHYA-PSVP-IVLVGTKLDLR  140 (159)
Q Consensus        66 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~i~~~~-~~~p-iilv~nK~Dl~  140 (159)
                      ++  ..+.+||+||++.|......++..+|++|+|+|+++.   .+|....  .|.+.+.... .++| ++|++||+|+.
T Consensus       119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~--qt~e~l~~~~~~~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG--QTREHAVLARTQGINHLVVVINKMDEP  194 (467)
T ss_dssp             SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTC--CHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred             CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCC--cHHHHHHHHHHcCCCEEEEEEECccCC
Confidence            33  5689999999999998888889999999999999976   3444322  3333322221 3677 99999999995


Q ss_pred             c
Q 044772          141 K  141 (159)
Q Consensus       141 ~  141 (159)
                      .
T Consensus       195 ~  195 (467)
T 1r5b_A          195 S  195 (467)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.64  E-value=6e-16  Score=126.51  Aligned_cols=120  Identities=15%  Similarity=0.096  Sum_probs=79.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------------------------------cc-ceeeeeEEEEEEC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY--------------------------------VP-TVFDNFSANVMVD   66 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------------------------~~-t~~~~~~~~~~~~   66 (159)
                      ...+||+++|++++|||||+++|++....-..                                .. |.... ...+...
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~-~~~~~~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSIC-TSHFSTH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCS-CCEEECS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeee-eEEEecC
Confidence            45789999999999999999999966432110                                00 11111 1122223


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---HHhhhhhhHHHH--HhhhCCCCCEEEEeeCccccc
Q 044772           67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPS---YENISKKKWVPE--LRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~--i~~~~~~~piilv~nK~Dl~~  141 (159)
                        ...+.||||||++.|......++..+|++|+|+|+++...   |....  .+...  +.......|++||+||+|+.+
T Consensus       244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~--qt~e~l~~~~~lgi~~iIVVvNKiDl~~  319 (611)
T 3izq_1          244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG--QTKEHMLLASSLGIHNLIIAMNKMDNVD  319 (611)
T ss_dssp             --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTS--HHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred             --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhh--HHHHHHHHHHHcCCCeEEEEEecccccc
Confidence              3568999999999999888899999999999999987431   11111  11111  111122345999999999987


Q ss_pred             Ccc
Q 044772          142 DRQ  144 (159)
Q Consensus       142 ~r~  144 (159)
                      .++
T Consensus       320 ~~~  322 (611)
T 3izq_1          320 WSQ  322 (611)
T ss_dssp             TCH
T ss_pred             hhH
Confidence            443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=9.8e-16  Score=120.77  Aligned_cols=118  Identities=18%  Similarity=0.115  Sum_probs=77.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC----------cccceeeee--------------------EEEEEECC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTF--PTD----------YVPTVFDNF--------------------SANVMVDG   67 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~----------~~~t~~~~~--------------------~~~~~~~~   67 (159)
                      ...+||+++|+.++|||||+++|+++..  ...          ..++.+..+                    .....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4568999999999999999999986541  111          111111000                    00111222


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ....+.+||+||++.|......++..+|++|+|+|+++....+..   .|+..+... ...|+++|+||+|+.+
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~---~~l~~~~~~-~~~~iIvviNK~Dl~~  171 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR---RHSYIASLL-GIKHIVVAINKMDLNG  171 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH---HHHHHHHHT-TCCEEEEEEECTTTTT
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH---HHHHHHHHc-CCCeEEEEEEcCcCCc
Confidence            335689999999999988888889999999999999976533322   343333322 1236999999999976

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.64  E-value=6.2e-16  Score=130.42  Aligned_cols=117  Identities=17%  Similarity=0.133  Sum_probs=85.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------cccceeeeeE-EEEE------------ECC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTD----------------YVPTVFDNFS-ANVM------------VDG   67 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~----------------~~~t~~~~~~-~~~~------------~~~   67 (159)
                      ....+||+|+|+.++|||||+++|+...  ....                ...|+..... ....            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3567899999999999999999998641  1100                0011111111 1111            134


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      ..+.+++|||||+..|...+..+++.+|++|+|||+.+..+++...  .|.....   .++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~--~~~~~~~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET--VLRQALG---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH--HHHHHHH---TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHH---cCCCeEEEEECCCcc
Confidence            4788999999999999999999999999999999999988887765  5544332   368999999999986

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.63  E-value=1.1e-15  Score=119.43  Aligned_cols=117  Identities=22%  Similarity=0.189  Sum_probs=81.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCCcc--------cceeeee-EEEEEECCeEEEEEEEeCCCcc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGN--------TFPTDYV--------PTVFDNF-SANVMVDGRTVNLGLWDTAGQE   81 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--------~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~   81 (159)
                      ....++|+++|++++|||||+++|.+.        .+. .+.        ...+.+. .....++.....+.+||+||++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~-~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-DYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-CHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcccccc-chhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            345689999999999999999999873        221 110        0111111 1222333333568999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           82 DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      .|......++..+|++|+|+|+++....+. .  .|+..+..  .++| +++++||+|+.+
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~--~~l~~~~~--~~ip~iivviNK~Dl~~  142 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMPQT-R--EHILLARQ--VGVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHH-H--HHHHHHHH--TTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcHHH-H--HHHHHHHH--cCCCEEEEEEECccccC
Confidence            998888888999999999999987654333 2  55554443  2578 899999999975

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.62  E-value=6.9e-16  Score=124.27  Aligned_cols=119  Identities=15%  Similarity=0.078  Sum_probs=79.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----------c----------ceeeee-EEEEEECCeEEEEEEEeCC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV----------P----------TVFDNF-SANVMVDGRTVNLGLWDTA   78 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----------~----------t~~~~~-~~~~~~~~~~~~~~i~D~~   78 (159)
                      .+.++|+++|++|+|||||+++|+...-.....          .          +.+... .....+....+.+++||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            467899999999999999999999632110000          0          001110 0111222233679999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      |++.|......++..+|++|+|+|+++.......   .++..+..  .++|+++++||+|+....
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~---~~~~~~~~--~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR---KLMEVTRL--RDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH---HHHHHHTT--TTCCEEEEEECTTSCCSC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH---HHHHHHHH--cCCCEEEEEcCcCCcccc
Confidence            9999988888899999999999999875432221   33333322  378999999999997643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.62  E-value=5e-15  Score=115.91  Aligned_cols=118  Identities=18%  Similarity=0.141  Sum_probs=79.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccc--ceeeeeEE-EEEE-------------C--C----eEEEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNT---FPTDYVP--TVFDNFSA-NVMV-------------D--G----RTVNLG   73 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~   73 (159)
                      ....++|+++|+.++|||||+++|.+..   +.....+  |....+.. ....             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998543   2222222  33333322 1111             0  1    136799


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEeCCCh----hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISR----PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +||+||++.|.......+..+|++|+|+|+++.    +++..+.  .    +... ...|+++++||+|+.+..
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~--~----~~~~-~~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM--A----LQII-GQKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH--H----HHHH-TCCCEEEEEECGGGSCHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH--H----HHHc-CCCcEEEEEECccCCCHH
Confidence            999999999887777778889999999999853    3333332  1    1111 235899999999997643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.62  E-value=1.1e-15  Score=117.73  Aligned_cols=124  Identities=20%  Similarity=0.177  Sum_probs=80.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee---------------eeeE-------------------------
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF---------------DNFS-------------------------   60 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~---------------~~~~-------------------------   60 (159)
                      ...+|+|+|++|||||||+++|.+..+.+....+..               ..+.                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            334999999999999999999999887433221110               0000                         


Q ss_pred             -------------EEEEE-CCeEEEEEEEeCCCcccc-------------cccccccccCCcEEEEEEeCCChhhHHhhh
Q 044772           61 -------------ANVMV-DGRTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISRPSYENIS  113 (159)
Q Consensus        61 -------------~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~  113 (159)
                                   ..+.+ ......+.+||+||...+             ..+...|+.+++++|+|+|..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                         00010 011234889999998765             345567889999999999876543332  2


Q ss_pred             hhhHHHHHhhhC-CCCCEEEEeeCcccccCcccccc
Q 044772          114 KKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus       114 ~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~  148 (159)
                        .|+..+.... .+.|+++|+||+|+.+.+....+
T Consensus       191 --~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~  224 (360)
T 3t34_A          191 --DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVE  224 (360)
T ss_dssp             --HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHH
T ss_pred             --HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHH
Confidence              4555444443 36799999999999766554433

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.62  E-value=6.9e-16  Score=127.76  Aligned_cols=116  Identities=16%  Similarity=0.112  Sum_probs=82.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------CcccceeeeeEEEEEECCeEEEEEEEeCC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGN--TFPT------------------DYVPTVFDNFSANVMVDGRTVNLGLWDTA   78 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~   78 (159)
                      ..+..+|+++|++|+|||||+++|+..  .+..                  .+..|.... ...+..+  .+.+++||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTP   85 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTP   85 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCC
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECc
Confidence            357799999999999999999999842  1110                  011111111 1122223  3679999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |+..|...+..++..+|++|+|+|+++..++....  .|... ..  .++|+++|+||+|+...
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~--~~~~~-~~--~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET--VWRQA-EK--YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHH-HH--TTCCEEEEEECTTSTTC
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH--HHHHH-HH--cCCCEEEEEECCCcccC
Confidence            99999888889999999999999999877776665  45432 22  37899999999999754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.62  E-value=2.7e-16  Score=127.17  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccceeeeeEEE------EEECCe---------------------
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP---TDYVPTVFDNFSAN------VMVDGR---------------------   68 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~------~~~~~~---------------------   68 (159)
                      .....+|+|+|.+|+|||||+|+|++.++.   ....++........      +..+..                     
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            345789999999999999999999998863   22233221100000      000000                     


Q ss_pred             --E---------EEEEEEeCCCccc-----------ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCC
Q 044772           69 --T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAP  126 (159)
Q Consensus        69 --~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~  126 (159)
                        .         ..+.+|||||...           |......++..+|++|+|+|+++........  .|+..+..  .
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~--~~l~~l~~--~  217 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS--EAIGALRG--H  217 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH--HHHHHTTT--C
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH--HHHHHHHh--c
Confidence              0         2488999999764           3344455678899999999998754444443  66666543  2


Q ss_pred             CCCEEEEeeCcccccCccc
Q 044772          127 SVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus       127 ~~piilv~nK~Dl~~~r~v  145 (159)
                      +.|+++|+||+|+...+++
T Consensus       218 ~~pvilVlNK~Dl~~~~el  236 (550)
T 2qpt_A          218 EDKIRVVLNKADMVETQQL  236 (550)
T ss_dssp             GGGEEEEEECGGGSCHHHH
T ss_pred             CCCEEEEEECCCccCHHHH
Confidence            5789999999999765443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.61  E-value=1.3e-15  Score=118.89  Aligned_cols=116  Identities=19%  Similarity=0.094  Sum_probs=78.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--cccc-e----eeee-EEEEEECCeEEEEEEEeCCCcccccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNT-------FPTD--YVPT-V----FDNF-SANVMVDGRTVNLGLWDTAGQEDYNR   85 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~~--~~~t-~----~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~   85 (159)
                      ..+||+++|+.++|||||+++|.+..       +...  .... .    +.+. .....+......+.+||+||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998641       1100  0000 0    0000 11122333335689999999999988


Q ss_pred             cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           86 LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        86 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      ....++..+|++|+|+|+++....+..   .++..+..  .++| +++++||+|+.+
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~---e~l~~~~~--~~vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR---EHLLLARQ--IGVEHVVVYVNKADAVQ  133 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH---HHHHHHHH--TTCCCEEEEEECGGGCS
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCeEEEEEECcccCC
Confidence            888889999999999999985444333   22233332  2578 789999999975

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.61  E-value=9.7e-16  Score=115.60  Aligned_cols=122  Identities=21%  Similarity=0.217  Sum_probs=74.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------ccceeeeeEE--------------------------------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY------VPTVFDNFSA--------------------------------   61 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~t~~~~~~~--------------------------------   61 (159)
                      ....+|+|+|.+|+|||||+++|++..+.+..      .++.......                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            45679999999999999999999988863221      1100000000                                


Q ss_pred             --------------------EEE-ECCeEEEEEEEeCCCccc-------------ccccccccccCCcEEEEEEeCCChh
Q 044772           62 --------------------NVM-VDGRTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISRP  107 (159)
Q Consensus        62 --------------------~~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~  107 (159)
                                          .+. .......+.+|||||...             +......++..+|++++|+|.++..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                000 011123589999999743             3344566788999999999975432


Q ss_pred             hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772          108 SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus       108 s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                       +.......++..+..  .+.|+++|+||+|+.+.+.
T Consensus       182 -~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~  215 (315)
T 1jwy_B          182 -LANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT  215 (315)
T ss_dssp             -STTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC
T ss_pred             -hhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch
Confidence             111110023333322  3689999999999975443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.61  E-value=1.6e-15  Score=125.61  Aligned_cols=120  Identities=11%  Similarity=0.131  Sum_probs=81.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cccccee--------eeeEEEEEE-------------------------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVF--------DNFSANVMV-------------------------   65 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~--------~~~~~~~~~-------------------------   65 (159)
                      ...++|+|+|.+|+|||||+|+|++..+.. ...|+..        .....+...                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            457899999999999999999999887532 2233221        000001111                         


Q ss_pred             ---------------------CCeE--EEEEEEeCCCccc---ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHH
Q 044772           66 ---------------------DGRT--VNLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVP  119 (159)
Q Consensus        66 ---------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~  119 (159)
                                           +...  ..+.+|||||...   .......+++.+|++|+|+|++++.++.+..  .|..
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~--~l~~  224 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR--YLEN  224 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH--HHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH--HHHH
Confidence                                 0000  2489999999654   2344567889999999999999887776664  5544


Q ss_pred             HHhhhCCCCCEEEEeeCcccccCc
Q 044772          120 ELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       120 ~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      .+..  .+.|+++|+||+|+...+
T Consensus       225 ~l~~--~~~~iiiVlNK~Dl~~~~  246 (695)
T 2j69_A          225 YIKG--RGLTVFFLVNAWDQVRES  246 (695)
T ss_dssp             HTTT--SCCCEEEEEECGGGGGGG
T ss_pred             HHHh--hCCCEEEEEECccccccc
Confidence            4433  257899999999997554

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.60  E-value=1.7e-15  Score=120.11  Aligned_cols=115  Identities=14%  Similarity=0.042  Sum_probs=78.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-------------------------------cccceeeeeEEEEEEC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN--TFPTD-------------------------------YVPTVFDNFSANVMVD   66 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~   66 (159)
                      ...++|+++|++++|||||+++|++.  .+...                               ...|....+.   .++
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~---~~~   81 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW---KFE   81 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE---EEE
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE---EEe
Confidence            35689999999999999999999864  22110                               0112221111   223


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHH---hhhhhhHHHHHhhhCCCCC-EEEEeeCccc
Q 044772           67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRP---SYE---NISKKKWVPELRHYAPSVP-IVLVGTKLDL  139 (159)
Q Consensus        67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl  139 (159)
                      .....+.+||+||++.|......++..+|++|+|+|+++..   +|.   ...  .++..+..  .++| ++|++||+|+
T Consensus        82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~--~~~~~~~~--~~v~~iivviNK~Dl  157 (458)
T 1f60_A           82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFT--LGVRQLIVAVNKMDS  157 (458)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHH--TTCCEEEEEEECGGG
T ss_pred             cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH--HHHHHHHH--cCCCeEEEEEEcccc
Confidence            33356999999999999888888999999999999999753   232   111  22222222  2465 9999999999


Q ss_pred             cc
Q 044772          140 RK  141 (159)
Q Consensus       140 ~~  141 (159)
                      .+
T Consensus       158 ~~  159 (458)
T 1f60_A          158 VK  159 (458)
T ss_dssp             GT
T ss_pred             cc
Confidence            74

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.60  E-value=1.6e-15  Score=107.77  Aligned_cols=115  Identities=13%  Similarity=0.070  Sum_probs=69.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED----------YNRLR   87 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~   87 (159)
                      .....+|+++|++|+|||||+++|.+..+...+.++.+... ...+..++   .+.+||++|...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34567999999999999999999998775444445544433 22333333   378999999742          22222


Q ss_pred             cccc---cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           88 PLSY---RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        88 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..++   ..++++++++|+.++.++.......|+..     .+.|+++++||+|+..
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s  151 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLA  151 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSC
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCC
Confidence            2333   57889999999987655533211134432     3689999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.59  E-value=6.3e-15  Score=122.07  Aligned_cols=116  Identities=17%  Similarity=0.125  Sum_probs=82.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------Cc-------ccceeeeeEEEEEECCeEEEEEEEeCC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG--NTFPT-----------DY-------VPTVFDNFSANVMVDGRTVNLGLWDTA   78 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~~~i~D~~   78 (159)
                      ..+..+|+++|++|+|||||+++|+.  +.+..           ++       ..|.... ...+..++  +.+++||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTP   83 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA-ATTAAWEG--HRVNIIDTP   83 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS-EEEEEETT--EEEEEECCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee-eEEEEECC--eeEEEEECc
Confidence            34678999999999999999999984  22211           00       0011111 11223333  569999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |+..|...+..+++.+|++|+|+|+++..++....  .|.. +..  .++|+++|+||+|+...
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~-~~~--~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQ-ATT--YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHH-HHH--cCCCEEEEEECCCcccc
Confidence            99999888888999999999999999877766654  4433 333  36899999999999754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.59  E-value=8.3e-16  Score=118.93  Aligned_cols=104  Identities=10%  Similarity=-0.011  Sum_probs=72.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      +|+++|++++|||||+++|+      ....|....+.   .+......+.+||+||+++|.......+..+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~---~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMY---NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSEEE---EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEE---EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998      11122222221   233233459999999999988777778899999999999 


Q ss_pred             CChhhHHhhhhhhHHHHHhhhCCCCCE-EEEee-CcccccCc
Q 044772          104 ISRPSYENISKKKWVPELRHYAPSVPI-VLVGT-KLDLRKDR  143 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~~~~pi-ilv~n-K~Dl~~~r  143 (159)
                      ++ ..+....  .|+..+...  ++|. ++++| |+|+ +.+
T Consensus        93 ~~-g~~~qt~--e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~  128 (370)
T 2elf_A           93 PQ-GLDAHTG--ECIIALDLL--GFKHGIIALTRSDST-HMH  128 (370)
T ss_dssp             TT-CCCHHHH--HHHHHHHHT--TCCEEEEEECCGGGS-CHH
T ss_pred             CC-CCcHHHH--HHHHHHHHc--CCCeEEEEEEeccCC-CHH
Confidence            53 3333333  454444332  4676 88899 9999 543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.58  E-value=8.9e-15  Score=121.33  Aligned_cols=118  Identities=14%  Similarity=0.066  Sum_probs=82.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------cccceeeeeEEEEEEC-----CeEEEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGN--TFPTD------------------YVPTVFDNFSANVMVD-----GRTVNLG   73 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~------------------~~~t~~~~~~~~~~~~-----~~~~~~~   73 (159)
                      ..+..+|+|+|+.++|||||+++|+..  .+...                  ...|..... ..+..+     +..+.++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA-TTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece-EEEEECCccccCCceeEE
Confidence            346789999999999999999999743  12110                  001111111 122222     2347899


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ||||||+..|...+..++..+|++|+|+|+++...+....  .|.. +..  .++|+++++||+|+...
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~-~~~--~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQ-ANK--YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHH-HHH--cCCCEEEEEeCCCcccc
Confidence            9999999999888889999999999999999876555443  4432 222  37899999999998754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.56  E-value=8.3e-16  Score=125.31  Aligned_cols=121  Identities=16%  Similarity=0.096  Sum_probs=63.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC-------------------------ccc--ceeeee-EEEEEECCe
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTD-------------------------YVP--TVFDNF-SANVMVDGR   68 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~-------------------------~~~--t~~~~~-~~~~~~~~~   68 (159)
                      ....++|+++|++++|||||+++|+...  +...                         ...  ..+.+. .....+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            3467899999999999999999996421  1000                         000  000000 001112223


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhh--hh--hhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENI--SK--KKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~--~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      ...+.||||||++.|......++..+|++|+|+|+++...+..+  ..  ...+..+..  .++| ++||+||+|+.+
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEecccccc
Confidence            35689999999999998888899999999999999864321111  10  011111111  2455 999999999975

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.55  E-value=1.8e-14  Score=112.20  Aligned_cols=73  Identities=18%  Similarity=0.279  Sum_probs=66.5

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------RPSYENISKKKWVPELRHY--APSVPIVLVGTKL  137 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~  137 (159)
                      +.+++||++|++.+...|..||++++++|||||+++          ..+|.++.  .|+..+...  ..++|++|||||+
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~--~~~~~i~~~~~~~~~piiLvgNK~  294 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL--NLFKSIWNNRWLRTISVILFLNKQ  294 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH--HHHHHHHTCTTCSSCCEEEEEECH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH--HHHHHHHhcccCCCCeEEEEEECh
Confidence            789999999999999999999999999999999999          88999888  899888765  3689999999999


Q ss_pred             ccccCcc
Q 044772          138 DLRKDRQ  144 (159)
Q Consensus       138 Dl~~~r~  144 (159)
                      |+.+.+.
T Consensus       295 DL~~~ki  301 (402)
T 1azs_C          295 DLLAEKV  301 (402)
T ss_dssp             HHHHHHH
T ss_pred             hhhhhhh
Confidence            9987665

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.55  E-value=2.7e-14  Score=111.36  Aligned_cols=84  Identities=19%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccc-ceeeeeEE-EE-------------------EECC-eEEEEEEEeCCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVP-TVFDNFSA-NV-------------------MVDG-RTVNLGLWDTAG   79 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~~~-~~-------------------~~~~-~~~~~~i~D~~g   79 (159)
                      +||+++|.+|||||||+|+|.+.... .++.. |....... .+                   .+++ ..+.+.+||+||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987732 22222 22222211 11                   1232 247799999999


Q ss_pred             ccc----ccccc---cccccCCcEEEEEEeCCCh
Q 044772           80 QED----YNRLR---PLSYRGADVFILAFSLISR  106 (159)
Q Consensus        80 ~~~----~~~~~---~~~~~~~~~~i~v~d~~~~  106 (159)
                      ...    ...+.   ..+++.+|++++|+|+.+.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    22222   3457899999999999874

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.55  E-value=6.5e-15  Score=126.22  Aligned_cols=119  Identities=20%  Similarity=0.144  Sum_probs=79.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-----C--cccceeeee-EEEEEECCeEEEEEEEeCCCcccc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNT-------FPT-----D--YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDY   83 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~-------~~~-----~--~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   83 (159)
                      ....++|+++|+.++|||||+++|.+..       +..     .  ...+.+.+. .....++.....+.+||+||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3456899999999999999999998631       100     0  000111111 011223333456899999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccccC
Q 044772           84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRKD  142 (159)
Q Consensus        84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~  142 (159)
                      ......++..+|++|+|+|+++....+..   .|+..+..  .++| ++|++||+|+.+.
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr---EhL~ll~~--lgIP~IIVVINKiDLv~d  427 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQTR---EHILLGRQ--VGVPYIIVFLNKCDMVDD  427 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTHH---HHHHHHHH--HTCSCEEEEEECCTTCCC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHHH---HHHHHHHH--cCCCeEEEEEeecccccc
Confidence            88888889999999999999986443322   44444433  2578 8999999999753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.53  E-value=2.6e-16  Score=118.63  Aligned_cols=100  Identities=17%  Similarity=0.099  Sum_probs=83.8

Q ss_pred             HHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHHhhhh
Q 044772           37 CLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRP-SYENISK  114 (159)
Q Consensus        37 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~  114 (159)
                      +|+.+++.+.|. ..+.||.++.+...+..++   .+++||+  ++++..+++.+++++|++|+|||++++. +|..+. 
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-
Confidence            688889999998 8899999977664432233   6899999  8999999999999999999999999987 688777 


Q ss_pred             hhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772          115 KKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus       115 ~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                       .|+..+..  .++|++||+||+||.+.+.+
T Consensus       106 -~~l~~~~~--~~~piilv~NK~DL~~~~~v  133 (301)
T 1u0l_A          106 -KFLVLAEK--NELETVMVINKMDLYDEDDL  133 (301)
T ss_dssp             -HHHHHHHH--TTCEEEEEECCGGGCCHHHH
T ss_pred             -HHHHHHHH--CCCCEEEEEeHHHcCCchhH
Confidence             89987765  47999999999999876654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.53  E-value=1.9e-14  Score=118.70  Aligned_cols=116  Identities=18%  Similarity=0.051  Sum_probs=80.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc----------------eeeee-EEEEEECCeEEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPT----------------VFDNF-SANVMVDGRTVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----------------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   82 (159)
                      ....+|+++|++|+|||||+++|++.........+                .+..+ .....+....+.+++||++|++.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45679999999999999999999844322111110                01111 22222332346799999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      |......++..+|++++|+|..+.......   .++..+..  .++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~---~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE---RAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH---HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH---HHHHHHHH--ccCCEEEEecCCchh
Confidence            988888899999999999998765443333   34444433  368999999999986

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.52  E-value=3.6e-14  Score=111.20  Aligned_cols=125  Identities=16%  Similarity=0.140  Sum_probs=73.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCc-------ccceeeee-EEEEEECCeEEEEEEEeCCCcccccc---
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDY-------VPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR---   85 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~---   85 (159)
                      .....++|+|+|++|+|||||++.|++..+. ..+       .++..... .......+....+.+||++|...+..   
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            4456678999999999999999999987763 211       11211111 11112233445799999999754311   


Q ss_pred             ----------------------cccccccCCcEEEEEEeCCCh-hhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           86 ----------------------LRPLSYRGADVFILAFSLISR-PSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        86 ----------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                                            +...++.++++.+++|..... .++..... .|+..+.   .++|+|+|+||+|+...
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~---~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH---EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT---TTSEEEEEEESTTSSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh---ccCcEEEEEEcccCccH
Confidence                                  123456677766666666543 35666554 6777775   37899999999998765


Q ss_pred             cccc
Q 044772          143 RQFH  146 (159)
Q Consensus       143 r~v~  146 (159)
                      +++.
T Consensus       183 ~ev~  186 (418)
T 2qag_C          183 EECQ  186 (418)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.47  E-value=1e-13  Score=106.50  Aligned_cols=120  Identities=23%  Similarity=0.248  Sum_probs=70.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cccee--------------------eee--------------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY------VPTVF--------------------DNF--------------   59 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~t~~--------------------~~~--------------   59 (159)
                      ....+|+|+|.+|||||||+++|++.++.+..      .|+.-                    ..+              
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            45579999999999999999999998874221      12200                    000              


Q ss_pred             ----------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCCcEEEE-EEeCCChhhHHhhhh
Q 044772           60 ----------SANVMVD-GRTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFIL-AFSLISRPSYENISK  114 (159)
Q Consensus        60 ----------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~  114 (159)
                                ...+.+. .....+.+|||||..             .+..+...|+...+.+|+ +.+.+.  .+.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~--~~~~~~~  186 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS--DLANSDA  186 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS--CGGGCHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC--ccchhHH
Confidence                      0001111 112469999999963             233455567766665555 455543  2332211


Q ss_pred             hhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772          115 KKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       115 ~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ..++..+..  .+.|+++|+||+|+.+.+
T Consensus       187 ~~i~~~~~~--~~~~~i~V~NK~Dl~~~~  213 (353)
T 2x2e_A          187 LKVAKEVDP--QGQRTIGVITKLDLMDEG  213 (353)
T ss_dssp             HHHHHHHCT--TCTTEEEEEECGGGSCTT
T ss_pred             HHHHHHhCc--CCCceEEEeccccccCcc
Confidence            023333332  478999999999997543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.42  E-value=5.3e-14  Score=106.00  Aligned_cols=122  Identities=16%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcC-CCCCCc--------ccceeeee-EEEEEECCeEEEEEEEeCCCc-------
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGN-TFPTDY--------VPTVFDNF-SANVMVDGRTVNLGLWDTAGQ-------   80 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------   80 (159)
                      .....++|+++|++|+|||||+++|.+. .+...+        .++..... ......++....+.+||++|.       
T Consensus        14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~   93 (301)
T 2qnr_A           14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR   93 (301)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred             EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence            3456689999999999999999998875 443332        11221111 112222344578999999997       


Q ss_pred             cccccccc-------cccc-------------CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           81 EDYNRLRP-------LSYR-------------GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        81 ~~~~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      +.+.....       .++.             .+++++++.+.+ ..++..+.. .++..+   ..+.|+++|+||.|+.
T Consensus        94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~-~~l~~l---~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A           94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV-AFMKAI---HNKVNIVPVIAKADTL  168 (301)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH-HHHHHH---TTTSCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH-HHHHHH---HhcCCEEEEEEeCCCC
Confidence            44443332       3322             223344443322 224555442 344433   3568999999999997


Q ss_pred             cCcc
Q 044772          141 KDRQ  144 (159)
Q Consensus       141 ~~r~  144 (159)
                      ..++
T Consensus       169 ~~~e  172 (301)
T 2qnr_A          169 TLKE  172 (301)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.38  E-value=1.2e-12  Score=100.72  Aligned_cols=83  Identities=22%  Similarity=0.156  Sum_probs=55.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccc-ceeeeeEEEEEECCe---------------EEEEEEEeCCCccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVP-TVFDNFSANVMVDGR---------------TVNLGLWDTAGQEDYN   84 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   84 (159)
                      .++|+++|.+|||||||+++|.+..+. .++.. |.+.... .+.+++.               ...+++||+||...+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            368999999999999999999987743 22222 3333222 2333432               1469999999987643


Q ss_pred             ----ccc---cccccCCcEEEEEEeCCC
Q 044772           85 ----RLR---PLSYRGADVFILAFSLIS  105 (159)
Q Consensus        85 ----~~~---~~~~~~~~~~i~v~d~~~  105 (159)
                          .+.   ..+++++|++++|+|+.+
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                222   234789999999999986

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.37  E-value=9.9e-13  Score=106.33  Aligned_cols=119  Identities=13%  Similarity=0.051  Sum_probs=81.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCcccc-e--e-eeeEEEEEECCeEEEEEEEeC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFP-----------------TDYVPT-V--F-DNFSANVMVDGRTVNLGLWDT   77 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------~~~~~t-~--~-~~~~~~~~~~~~~~~~~i~D~   77 (159)
                      ..+..+|.|+|+.++|||||..+|+...-.                 .++.+. .  + ........+....+.++|.||
T Consensus        28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT  107 (548)
T 3vqt_A           28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT  107 (548)
T ss_dssp             HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred             ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence            457789999999999999999999622110                 000000 0  0 001111222223367999999


Q ss_pred             CCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           78 AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ||+.+|.......++-+|++|+|+|+...-..+...  .|-....   .++|++++.||+|....
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~---~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRM---RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHH---TTCCEEEEEECTTSCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHH---hCCceEEEEecccchhc
Confidence            999999999999999999999999998765555444  5544333   37999999999998653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.34  E-value=3.8e-12  Score=99.69  Aligned_cols=115  Identities=18%  Similarity=0.143  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccCCc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY----NRLRPLS---YRGAD   95 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~~   95 (159)
                      .|.|+|++|+|||||+++|.+.... ..+..+.-......+..++ ...+.+||++|....    ..+...+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            4899999999999999999876421 1222221111122333343 235889999996321    1122222   45799


Q ss_pred             EEEEEEeCCChhhHHhhhhhhHHHHHhhhC---CCCCEEEEeeCcccccC
Q 044772           96 VFILAFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  142 (159)
                      .++.++|++ ...+..+.  .|...+..+.   ...|.+||+||+|+...
T Consensus       238 ~lL~vvDls-~~~~~~ls--~g~~el~~la~aL~~~P~ILVlNKlDl~~~  284 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLE--TLRKEVGAYDPALLRRPSLVALNKVDLLEE  284 (416)
T ss_dssp             EEEEEEETT-SCHHHHHH--HHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             hhhEEeCCc-cCCHHHHH--HHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence            999999998 56677776  6666666554   26799999999998753

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.31  E-value=4.2e-12  Score=98.19  Aligned_cols=118  Identities=17%  Similarity=0.130  Sum_probs=77.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------cccc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR-------LRPL   89 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~   89 (159)
                      ......+|.+||.||||||||+|+|.+.+.. .+|..++-+.....+.+++.  ++++.|+||--.-..       ....
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~  145 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIA  145 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHH
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHH
Confidence            3455679999999999999999999976643 34444444444445666775  488999999532111       1123


Q ss_pred             cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh---CCCCCEEEEeeCccccc
Q 044772           90 SYRGADVFILAFSLISRPSYENISKKKWVPELRHY---APSVPIVLVGTKLDLRK  141 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~  141 (159)
                      .++.+|++++|+|+.++..-..    ....++...   ..+.|.+++.||.|...
T Consensus       146 ~i~~ad~il~vvD~~~p~~~~~----~i~~EL~~~~~~l~~k~~~i~~nK~d~~g  196 (376)
T 4a9a_A          146 VARTCNLLFIILDVNKPLHHKQ----IIEKELEGVGIRLNKTPPDILIKKKEKGG  196 (376)
T ss_dssp             HHHHCSEEEEEEETTSHHHHHH----HHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred             HHHhcCccccccccCccHHHHH----HHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence            4578999999999998743221    122222222   23678889999999753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.23  E-value=9.9e-15  Score=104.97  Aligned_cols=37  Identities=14%  Similarity=0.030  Sum_probs=29.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceee
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD   57 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~   57 (159)
                      +.++|+++|.+|||||||+++|+...+...+.++.+.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~   73 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG   73 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence            4689999999999999999999977665544455443

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.23  E-value=3.3e-11  Score=100.17  Aligned_cols=117  Identities=16%  Similarity=0.113  Sum_probs=79.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--------CCCC--cccceeee-------eE--EEEEEC-----CeEEEEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNT--------FPTD--YVPTVFDN-------FS--ANVMVD-----GRTVNLGLW   75 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~--------~~~~--~~~t~~~~-------~~--~~~~~~-----~~~~~~~i~   75 (159)
                      .+..+|+|+|+-++|||||..+|+...        ....  +.-+...+       .+  ..+.+.     ...+.+++.
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            577899999999999999999987221        1110  11111111       01  122222     135789999


Q ss_pred             eCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           76 DTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        76 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ||||+.+|.......++-+|++|+|+|+...-..+...  .|-.....   ++|.+++.||+|...
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc---CCCeEEEEccccccC
Confidence            99999999999999999999999999998654444443  44444433   689999999999864

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.21  E-value=8.9e-12  Score=96.84  Aligned_cols=89  Identities=18%  Similarity=0.094  Sum_probs=50.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc--ceeeeeEEEEEECCe---------------EEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVP--TVFDNFSANVMVDGR---------------TVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   82 (159)
                      ....+|.++|.+|||||||+++|.+..+.....|  |.... ...+.+++.               ...+.+||++|...
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~-~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN-ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCS-EEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce-eEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            4567899999999999999999998765332222  22222 223333332               23589999999865


Q ss_pred             ccc-------cccccccCCcEEEEEEeCCChhhH
Q 044772           83 YNR-------LRPLSYRGADVFILAFSLISRPSY  109 (159)
Q Consensus        83 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~  109 (159)
                      ...       .+..+++++|++++|+|+.+.+++
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            443       345567899999999999865544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.14  E-value=4.2e-12  Score=104.41  Aligned_cols=116  Identities=16%  Similarity=0.037  Sum_probs=78.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc--CCCCCC--------cccce------e-eeeEEEEEECCeEEEEEEEeCCCccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG--NTFPTD--------YVPTV------F-DNFSANVMVDGRTVNLGLWDTAGQEDYN   84 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~--~~~~~~--------~~~t~------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~   84 (159)
                      ..||+|+|+.++|||||..+|+.  +.+...        +....      + ........+....+.+++.||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            46899999999999999999972  222110        00000      0 0011122233344669999999999999


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           85 RLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        85 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ......++-+|++|+|+|+...-.-+...  .|......   ++|.+++.||+|....
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~--v~~~a~~~---~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRI--LFHALRKM---GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHH--HHHHHHHH---TCSCEECCEECCSSSC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHH--HHHHHHHc---CCCeEEEEeccccccC
Confidence            99999999999999999998654433332  44433332   6899999999998643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.14  E-value=2.6e-11  Score=86.69  Aligned_cols=110  Identities=13%  Similarity=0.046  Sum_probs=62.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-------------EEEEEECC------------------eE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-------------SANVMVDG------------------RT   69 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~   69 (159)
                      ...+|+++|.+|||||||+++|................+             .....++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457899999999999999999986532111111111000             00011111                  12


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.+.+||++|+.....   .+....+.+++|+|+.+...  ...  .+...+     +.|+++|+||+|+...
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~--~~~~~~-----~~~~iiv~NK~Dl~~~  169 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVE--KHPEIF-----RVADLIVINKVALAEA  169 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHH--HCHHHH-----HTCSEEEEECGGGHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhh--hhhhhh-----hcCCEEEEecccCCcc
Confidence            4578999888511111   11124678999999875431  111  112211     4789999999999654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.13  E-value=1.8e-11  Score=94.08  Aligned_cols=61  Identities=20%  Similarity=0.141  Sum_probs=41.9

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.+.||||+|....   ....+..+|.+++|+|....+.+..+.  .++       .+.|+++|+||+|+...
T Consensus       172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~--~~~-------~~~p~ivVlNK~Dl~~~  232 (355)
T 3p32_A          172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK--KGV-------LELADIVVVNKADGEHH  232 (355)
T ss_dssp             CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC--TTS-------GGGCSEEEEECCCGGGH
T ss_pred             CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH--HhH-------hhcCCEEEEECCCCcCh
Confidence            56899999994321   123347899999999987655544333  211       13589999999998743

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.08  E-value=7.3e-10  Score=92.30  Aligned_cols=118  Identities=18%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccccee-e----------------------------------------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPTVF-D----------------------------------------   57 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~-~----------------------------------------   57 (159)
                      ....+|+|+|..++|||||+|.|++..+.+. ...++. .                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4556999999999999999999999876321 111100 0                                        


Q ss_pred             -----e-----eEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-cCCcEEEEEEeCCChhhHHhhh
Q 044772           58 -----N-----FSANVMVDGRTVNLGLWDTAGQED-------------YNRLRPLSY-RGADVFILAFSLISRPSYENIS  113 (159)
Q Consensus        58 -----~-----~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~  113 (159)
                           .     ....+...+ ...+.++||||...             +..+...|+ ..++++++|+|++....-....
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                 0     000111111 12478999999543             112233344 5789999999998643322221


Q ss_pred             hhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          114 KKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       114 ~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                        .++..+..  .+.|+++|.||+|+.+.
T Consensus       208 --~ll~~L~~--~g~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          208 --KIAKEVDP--QGQRTIGVITKLDLMDE  232 (772)
T ss_dssp             --HHHHHHCT--TCSSEEEEEECTTSSCT
T ss_pred             --HHHHHHHh--cCCCEEEEEeCcccCCc
Confidence              33444433  36899999999998754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.01  E-value=2.5e-10  Score=88.11  Aligned_cols=82  Identities=18%  Similarity=0.140  Sum_probs=54.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC-CCCccc-ceeeeeEEEEEECC-------------------eEEEEEEEeCCCcc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTF-PTDYVP-TVFDNFSANVMVDG-------------------RTVNLGLWDTAGQE   81 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~-t~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~   81 (159)
                      ++|.++|.+|||||||+++|.+... ..++.. |...+.. ...+.+                   ....+.+||+||..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            5799999999999999999997642 222222 2222221 112221                   23469999999986


Q ss_pred             cccc----c---ccccccCCcEEEEEEeCCC
Q 044772           82 DYNR----L---RPLSYRGADVFILAFSLIS  105 (159)
Q Consensus        82 ~~~~----~---~~~~~~~~~~~i~v~d~~~  105 (159)
                      ....    +   ...+++.+|++++|+|+.+
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            5432    2   1234789999999999975

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.01  E-value=3.5e-10  Score=82.84  Aligned_cols=72  Identities=11%  Similarity=0.013  Sum_probs=41.9

Q ss_pred             EEEEEEeCCCccccccccc------ccccCCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           70 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.+.+|||+|.........      ..+.+ +++|+++|............ ..+.... ....+.|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEeccccccc
Confidence            5799999999865533221      24456 78888888653322222211 0111111 11136899999999998754


Q ss_pred             c
Q 044772          143 R  143 (159)
Q Consensus       143 r  143 (159)
                      +
T Consensus       187 ~  187 (262)
T 1yrb_A          187 E  187 (262)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.99  E-value=2.3e-11  Score=93.39  Aligned_cols=60  Identities=17%  Similarity=0.139  Sum_probs=35.5

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +.+.++|++|....   .......+|.+++|+|..+......+.  .   .+    -+.|.++|+||+|+..
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~--~---~i----l~~~~ivVlNK~Dl~~  226 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK--R---GI----IEMADLVAVTKSDGDL  226 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGG
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH--H---HH----HhcCCEEEEeeecCCC
Confidence            45789999995311   123356899999999988654322221  1   11    1457899999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.95  E-value=1e-10  Score=89.41  Aligned_cols=61  Identities=21%  Similarity=0.119  Sum_probs=38.7

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.+.+|||+|...+...   ....+|++++|+|......+..+.  .   ...    +.|.++|+||+|+...
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~--~---~~~----~~p~ivv~NK~Dl~~~  209 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK--K---GLM----EVADLIVINKDDGDNH  209 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC--H---HHH----HHCSEEEECCCCTTCH
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH--H---hhh----cccCEEEEECCCCCCh
Confidence            56999999996543322   357899999999987654432221  1   111    3588999999999754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.80  E-value=8.8e-09  Score=80.04  Aligned_cols=86  Identities=20%  Similarity=0.174  Sum_probs=56.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CC-CcccceeeeeEEEEEECCe---------------EEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTF-PT-DYVPTVFDNFSANVMVDGR---------------TVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   82 (159)
                      ....++.++|++|+|||||++.|.+... .. ++..+.-......+.+.+.               ...+.+||++|...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4567999999999999999999998765 32 2222222112333444431               13589999999543


Q ss_pred             c-------cccccccccCCcEEEEEEeCCC
Q 044772           83 Y-------NRLRPLSYRGADVFILAFSLIS  105 (159)
Q Consensus        83 ~-------~~~~~~~~~~~~~~i~v~d~~~  105 (159)
                      .       ...+...++.+++++.|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2       1223344678999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.70  E-value=1.2e-07  Score=74.30  Aligned_cols=114  Identities=16%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----ccee-eeeEEEEEECCeEEEEEEEeCCCccccc-----------
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV----PTVF-DNFSANVMVDGRTVNLGLWDTAGQEDYN-----------   84 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------   84 (159)
                      ..++++|+|++|+|||||++.|.+..+.....    +... ..........+....+.++|++|.....           
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            34579999999999999999999875432111    1110 0011111112233468899987643210           


Q ss_pred             -------ccccc---------cccCC--cE-EEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           85 -------RLRPL---------SYRGA--DV-FILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        85 -------~~~~~---------~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                             .....         .+.++  |. ++|+.|....  +...+. .++..+.   .++|+|+|.||+|..
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Di-eilk~L~---~~~~vI~Vi~KtD~L  189 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDL-VTMKKLD---SKVNIIPIIAKADAI  189 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHH-HHHHHTC---SCSEEEEEESCGGGS
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHH-HHHHHHh---hCCCEEEEEcchhcc
Confidence                   00011         12233  33 5556665533  222222 4445443   478999999999975

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.70  E-value=8.8e-09  Score=79.53  Aligned_cols=109  Identities=11%  Similarity=0.070  Sum_probs=63.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC------CCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN------TFPTD-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL--------   86 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~------~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------   86 (159)
                      ..+++++|.+|+|||||+|.|++.      ..... ...+..  ......++..   +.++||||-......        
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLESG---ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999975      22111 111111  1122333332   789999995432211        


Q ss_pred             ccccc--cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           87 RPLSY--RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        87 ~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      ...++  +..+.++++.+....-.+..+...+++..     .+.|++++.||.|..
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~-----~~~~~~~v~~k~d~~  287 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKG-----GRRSFVCYMANELTV  287 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCE
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEEEEEccC-----CCceEEEEecCCccc
Confidence            11122  56788888888743222222221122221     367999999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.69  E-value=1.9e-08  Score=75.60  Aligned_cols=61  Identities=20%  Similarity=0.117  Sum_probs=51.4

Q ss_pred             cccccccccccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           80 QEDYNRLRPLSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      ++++..+.+.++.++|.+++|||++++. ++..+.  .|+..+..  .++|++||+||+|+.+.+.
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~--~~l~~~~~--~~~~~ilV~NK~DL~~~~~  127 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD--NMLVVYEY--FKVEPVIVFNKIDLLNEEE  127 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH--HHHHHHHH--TTCEEEEEECCGGGCCHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH--HHHHHHHh--CCCCEEEEEEcccCCCccc
Confidence            5677777788999999999999999886 888777  88887665  5799999999999976553

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.67  E-value=6.7e-08  Score=71.58  Aligned_cols=115  Identities=16%  Similarity=0.141  Sum_probs=61.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc------cceeeeeEEEEE--EC--CeEEEEEEEeCCCcccccc------
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYV------PTVFDNFSANVM--VD--GRTVNLGLWDTAGQEDYNR------   85 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~------~t~~~~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~------   85 (159)
                      .++++++|++|+|||||++.|.+......-.      +.........+.  ..  +-...+.++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            5789999999999999999998654321100      000000001111  11  2223578999887321100      


Q ss_pred             ----------------------cccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           86 ----------------------LRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        86 ----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                                            ..+..+..+++.+++.|-.. ..+...+. ..+..+..   ..++++|.+|.|...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~-~~l~~L~~---~~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDL-EFMKHLSK---VVNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHH-HHHHHHHT---TSEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHH-HHHHHHHh---cCcEEEEEeccccCC
Confidence                                  01112334677888888542 12222222 55555554   389999999999753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.66  E-value=1.3e-08  Score=78.58  Aligned_cols=112  Identities=10%  Similarity=0.025  Sum_probs=62.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC---C--cccceeeee-EEEEEECCeEEEEEEEeCCCccccccc--------c
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPT---D--YVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRL--------R   87 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---~--~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~   87 (159)
                      ..+++++|.+|+|||||+|+|++.....   .  .....+.+. .....++..   +.++||||-......        .
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            3589999999999999999999753111   0  001111111 122233332   789999996432211        1


Q ss_pred             ccc--ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           88 PLS--YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        88 ~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..+  ....+.++++++....-.+..+...+++..     .+.|+++++||.|...
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~-----~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG-----GRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEE
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEEEEEecC-----CCceEEEEecCccccc
Confidence            111  245677888887643222222221122221     3679999999999753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.61  E-value=1.1e-08  Score=72.94  Aligned_cols=62  Identities=10%  Similarity=-0.007  Sum_probs=40.4

Q ss_pred             CCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhH---HHHHhhhC--CCCCEEEEeeCc-cccc
Q 044772           78 AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKW---VPELRHYA--PSVPIVLVGTKL-DLRK  141 (159)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~i~~~~--~~~piilv~nK~-Dl~~  141 (159)
                      +||+.++..|++||.++|++|||+|.+|++.+. ... .+   ...+....  .++|++|++||. |++.
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~-EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~  177 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQD-EFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK  177 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHH-HHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHH-HHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence            478899999999999999999999999987654 322 33   22232321  478999999995 7753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.54  E-value=3.6e-08  Score=75.20  Aligned_cols=60  Identities=15%  Similarity=0.093  Sum_probs=35.0

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +.+.++||+|...-..   .....+|.+++++|....+....+.  ..+.       +.+.+++.||+|+..
T Consensus       148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~--~~i~-------~~~~ivvlNK~Dl~~  207 (337)
T 2qm8_A          148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK--KGIF-------ELADMIAVNKADDGD  207 (337)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC--TTHH-------HHCSEEEEECCSTTC
T ss_pred             CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH--HHHh-------ccccEEEEEchhccC
Confidence            5689999999642211   2246799999999986443322222  2221       135567779999743

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.46  E-value=2.1e-07  Score=69.26  Aligned_cols=58  Identities=21%  Similarity=0.154  Sum_probs=35.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE   81 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~   81 (159)
                      ...++++++|.+|||||||+|+|.+...... .+..+.+. ...+..+.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            3568999999999999999999997663211 11111111 11222232   37899999963

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.45  E-value=1.2e-07  Score=69.95  Aligned_cols=55  Identities=13%  Similarity=0.088  Sum_probs=34.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE   81 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~   81 (159)
                      ++++++|.+|+|||||+|+|.+..... ..++.+.+. ...+..+.   .+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence            699999999999999999999776532 122222222 11222222   47899999964

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.37  E-value=7.5e-07  Score=71.29  Aligned_cols=114  Identities=14%  Similarity=0.065  Sum_probs=62.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh------cCCCC----CCcccce-----------eee-eEEEEE-------------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYT------GNTFP----TDYVPTV-----------FDN-FSANVM-------------   64 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~t~-----------~~~-~~~~~~-------------   64 (159)
                      .....|+++|.+||||||++++|.      +.+..    ..+.+..           +.. +.....             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998      33211    0111110           000 000000             


Q ss_pred             ECCeEEEEEEEeCCCcccccc-cccc---c--ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCE-EEEeeCc
Q 044772           65 VDGRTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPI-VLVGTKL  137 (159)
Q Consensus        65 ~~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~pi-ilv~nK~  137 (159)
                      .....+.+.|+||+|...... ....   .  +..++.+++|+|.......  +   .....+..   .+|+ ++|.||+
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~--~---~~a~~~~~---~~~i~gvVlNK~  250 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC--E---AQAKAFKD---KVDVASVIVTKL  250 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH--H---HHHHHHHH---HHCCCCEEEECT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH--H---HHHHHHHh---hcCceEEEEeCC
Confidence            000235689999999653211 1111   1  1268899999998764321  1   22222222   2575 8999999


Q ss_pred             cccc
Q 044772          138 DLRK  141 (159)
Q Consensus       138 Dl~~  141 (159)
                      |...
T Consensus       251 D~~~  254 (504)
T 2j37_W          251 DGHA  254 (504)
T ss_dssp             TSCC
T ss_pred             cccc
Confidence            9864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.31  E-value=9.4e-08  Score=71.19  Aligned_cols=65  Identities=9%  Similarity=-0.030  Sum_probs=45.2

Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCChhhHHhhhh-hhHHHHHhhh--CCCCCEEEEeeC-ccccc
Q 044772           77 TAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHY--APSVPIVLVGTK-LDLRK  141 (159)
Q Consensus        77 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~--~~~~piilv~nK-~Dl~~  141 (159)
                      .+||+.++..|++||.++|++|||+|.+|++.+....+ ..+...+...  ..++|++|++|| .|++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~  262 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK  262 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence            35788899999999999999999999999887652221 0122223222  257999999996 68864

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.24  E-value=9.4e-07  Score=71.94  Aligned_cols=63  Identities=21%  Similarity=0.093  Sum_probs=39.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccce-eeeeEEEEE---E-CCeEEEEEEEeCCCccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVM---V-DGRTVNLGLWDTAGQED   82 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~---~-~~~~~~~~i~D~~g~~~   82 (159)
                      ....+|+|+|.+|+|||||+|+|++....-....+. ..+.....+   . ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            456789999999999999999999876321222222 111111111   1 11223588999999643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.12  E-value=9.3e-06  Score=63.48  Aligned_cols=111  Identities=16%  Similarity=0.175  Sum_probs=56.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCc-ccceeeee--EEEEEECCeEEEEEEEeCCCcccccccccc-----cccCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDY-VPTVFDNF--SANVMVDGRTVNLGLWDTAGQEDYNRLRPL-----SYRGA   94 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~~~   94 (159)
                      ..+.++|++|+|||||++.+.+-.-...- ....+...  ...+......-.+.+||++|..........     .+...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            37999999999999999999874322110 00000000  001111111114789999885321111111     13333


Q ss_pred             cEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           95 DVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        95 ~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      +..++ ++....+ -+.+   .+...+..  .+.|+++|.||.|+.
T Consensus       150 ~~~~~-lS~G~~~-kqrv---~la~aL~~--~~~p~~lV~tkpdll  188 (413)
T 1tq4_A          150 DFFII-ISATRFK-KNDI---DIAKAISM--MKKEFYFVRTKVDSD  188 (413)
T ss_dssp             SEEEE-EESSCCC-HHHH---HHHHHHHH--TTCEEEEEECCHHHH
T ss_pred             CCeEE-eCCCCcc-HHHH---HHHHHHHh--cCCCeEEEEecCccc
Confidence            44444 7765211 1111   22222222  257999999999974

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.07  E-value=5.1e-06  Score=68.03  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++|+|++|+|||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.96  E-value=1.6e-07  Score=74.61  Aligned_cols=99  Identities=14%  Similarity=-0.044  Sum_probs=58.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeee---eEEEEEECCeEEEEEEEeCCCccc--ccccc-------
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDN---FSANVMVDGRTVNLGLWDTAGQED--YNRLR-------   87 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~-------   87 (159)
                      ....+|+++|.+|+||||+.++|....... ..++....   +..  ...+......+||..|.+.  +...+       
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~--~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~  113 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRR--DMVKTYKSFEFFLPDNEEGLKIRKQCALAALND  113 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHH--HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhh--hhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999987432110 11121110   000  0011112346889888732  22222       


Q ss_pred             -cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhh
Q 044772           88 -PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY  124 (159)
Q Consensus        88 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~  124 (159)
                       ..++....+.++|+|.++. ++....  .|+..+...
T Consensus       114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~--~~~~~~~~~  148 (469)
T 1bif_A          114 VRKFLSEEGGHVAVFDATNT-TRERRA--MIFNFGEQN  148 (469)
T ss_dssp             HHHHHHTTCCSEEEEESCCC-SHHHHH--HHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeCCCC-CHHHHH--HHHHHHHhc
Confidence             4566667888999999987 455555  676666554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.83  E-value=1.6e-05  Score=62.50  Aligned_cols=65  Identities=18%  Similarity=0.112  Sum_probs=38.7

Q ss_pred             EEEEEEEeCCCccccccc----c--cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCC-C-EEEEeeCcccc
Q 044772           69 TVNLGLWDTAGQEDYNRL----R--PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSV-P-IVLVGTKLDLR  140 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~----~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~-p-iilv~nK~Dl~  140 (159)
                      .+.+.|+|++|.......    .  ...+..++.+++|.|.....   ...  .....+   .+.. | ..+|.||+|..
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~--~~~~~~---~~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAG--IQAKAF---KEAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHH--HHHHHH---HTTSCSCEEEEEECSSSC
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHH--HHHHHH---hhcccCCeEEEEeCCCCc
Confidence            356899999996432110    0  11233689999999976432   111  222222   2345 6 89999999975


Q ss_pred             c
Q 044772          141 K  141 (159)
Q Consensus       141 ~  141 (159)
                      .
T Consensus       252 ~  252 (432)
T 2v3c_C          252 A  252 (432)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.80  E-value=6.7e-06  Score=63.37  Aligned_cols=57  Identities=19%  Similarity=0.391  Sum_probs=46.2

Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ..+.|...+.++++.++++++|+|+.++.     .  .|...+.++..+.|+++|+||+|+...
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~--~~~~~l~~~~~~~p~ilV~NK~DL~~~  111 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----G--SWLPGLHRFVGNNKVLLVGNKADLIPK  111 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----H--HCCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----c--cHHHHHHHHhCCCcEEEEEEChhcCCc
Confidence            35788888899999999999999999854     2  666666666668999999999999653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.69  E-value=6.1e-05  Score=59.32  Aligned_cols=23  Identities=22%  Similarity=0.085  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .+..|+++|++|+||||++.+|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            46789999999999999998886

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.65  E-value=1.1e-05  Score=62.13  Aligned_cols=57  Identities=21%  Similarity=0.371  Sum_probs=45.0

Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           79 GQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        79 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      .++.|...+.+++.+++++++|+|+.++.+       .|...+.+...+.|+++|+||+|+...
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-------s~~~~l~~~l~~~piilV~NK~DLl~~  113 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-------SFIPGLPRFAADNPILLVGNKADLLPR  113 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-------GCCSSHHHHCTTSCEEEEEECGGGSCT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-------chhhHHHHHhCCCCEEEEEEChhcCCC
Confidence            367888888888899999999999998763       455555555568899999999999653

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.63  E-value=3.4e-05  Score=54.40  Aligned_cols=29  Identities=10%  Similarity=0.039  Sum_probs=22.4

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+.....-|+|+|++|+|||||+++|...
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            34445556899999999999999999853

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.55  E-value=4.9e-05  Score=52.64  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +++++|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.54  E-value=4.6e-05  Score=52.59  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .-++++|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999853

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.50  E-value=5.6e-05  Score=53.05  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..++|+|++|+|||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.50  E-value=0.00018  Score=56.74  Aligned_cols=26  Identities=12%  Similarity=0.018  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+..-|.|+|++++|||+|+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34556889999999999999999863

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.37  E-value=9.9e-05  Score=52.79  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      --++|+|++|||||||++.|.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            35889999999999999998864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.36  E-value=0.0001  Score=51.96  Aligned_cols=24  Identities=21%  Similarity=0.109  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .--++++|++|+|||||++.+.+-
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            345889999999999999988754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.36  E-value=0.0001  Score=51.40  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999998764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.36  E-value=0.00011  Score=51.22  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+|+||+||||+||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999743

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.35  E-value=9.6e-05  Score=50.59  Aligned_cols=19  Identities=16%  Similarity=0.176  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 044772           24 KCVTVRDGAVGKTCLLISY   42 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l   42 (159)
                      -++++|++|+|||||++.+
T Consensus        11 i~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999953

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.35  E-value=0.00011  Score=50.74  Aligned_cols=23  Identities=9%  Similarity=-0.009  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -.++++|++|+|||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.33  E-value=0.00012  Score=52.21  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -.++|+|++|+|||||++.|.+-
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999998763

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.28  E-value=0.00014  Score=51.26  Aligned_cols=23  Identities=17%  Similarity=0.108  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .-|+++|++|+|||||++.|...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999999854

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.23  E-value=0.00019  Score=50.52  Aligned_cols=25  Identities=12%  Similarity=-0.029  Sum_probs=21.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .....+.|+|++|+|||||++.|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999987763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.21  E-value=0.00018  Score=51.89  Aligned_cols=22  Identities=14%  Similarity=0.019  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999999999988753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.21  E-value=0.0002  Score=50.20  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+|+|++|||||||+++|..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.21  E-value=0.00026  Score=49.36  Aligned_cols=25  Identities=8%  Similarity=0.163  Sum_probs=21.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .....|+|+|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999988863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.21  E-value=0.00028  Score=50.43  Aligned_cols=21  Identities=10%  Similarity=-0.035  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -|+|+|+|||||+|...+|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999888763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.17  E-value=0.00025  Score=49.78  Aligned_cols=24  Identities=25%  Similarity=0.094  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ....+.++|++|||||||++.|.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            335799999999999999988765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.16  E-value=0.00031  Score=47.78  Aligned_cols=22  Identities=14%  Similarity=0.116  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+++|++||||||+.++|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999975

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.16  E-value=0.00024  Score=48.19  Aligned_cols=23  Identities=22%  Similarity=0.056  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999888654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.15  E-value=0.00028  Score=48.67  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+...|+++|.+||||||+.+.|...
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999888654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.14  E-value=0.00038  Score=48.52  Aligned_cols=24  Identities=8%  Similarity=-0.004  Sum_probs=20.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .....|+|.|.+||||||+.+.|.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            344679999999999999998886

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.14  E-value=0.00033  Score=47.68  Aligned_cols=22  Identities=14%  Similarity=0.060  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..++++|++|+||||+++.|..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999988753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.14  E-value=0.00026  Score=48.01  Aligned_cols=22  Identities=14%  Similarity=0.025  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|+++|++||||||+++.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.14  E-value=0.00025  Score=54.40  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      .++++|++|+|||||++.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999997543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.13  E-value=0.00023  Score=50.94  Aligned_cols=22  Identities=18%  Similarity=0.072  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.12  E-value=0.0003  Score=49.20  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ....++|+|++|+|||||++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.12  E-value=0.00026  Score=47.76  Aligned_cols=21  Identities=5%  Similarity=-0.078  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|+|+|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.12  E-value=0.00027  Score=48.81  Aligned_cols=21  Identities=14%  Similarity=0.151  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++++|++|+|||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999874

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.12  E-value=0.00028  Score=47.57  Aligned_cols=19  Identities=11%  Similarity=-0.046  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 044772           24 KCVTVRDGAVGKTCLLISY   42 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l   42 (159)
                      -|+++|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999998

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.11  E-value=0.00029  Score=51.05  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.11  E-value=0.00031  Score=48.92  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ..++++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999987643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.09  E-value=0.00029  Score=51.70  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++++|++|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.08  E-value=0.00035  Score=50.40  Aligned_cols=22  Identities=14%  Similarity=0.231  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999987

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.08  E-value=0.00029  Score=49.23  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            578999999999999998875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.08  E-value=0.0003  Score=52.06  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++++|++|+|||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999988753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.07  E-value=0.00031  Score=50.78  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.07  E-value=0.00032  Score=49.97  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.05  E-value=0.00035  Score=47.57  Aligned_cols=22  Identities=9%  Similarity=0.114  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+++|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.05  E-value=0.00033  Score=51.23  Aligned_cols=22  Identities=23%  Similarity=0.296  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++++|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999988754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.04  E-value=0.00038  Score=50.46  Aligned_cols=22  Identities=9%  Similarity=-0.025  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.04  E-value=0.00034  Score=51.49  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999887643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.03  E-value=0.00038  Score=50.59  Aligned_cols=22  Identities=18%  Similarity=-0.000  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.03  E-value=0.00035  Score=51.26  Aligned_cols=22  Identities=14%  Similarity=0.060  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.++++|++|+|||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999998875

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.03  E-value=0.00036  Score=50.10  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.02  E-value=0.00037  Score=51.23  Aligned_cols=22  Identities=18%  Similarity=0.163  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999988754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.02  E-value=0.00037  Score=50.45  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999988754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.00  E-value=0.00039  Score=50.66  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.00  E-value=0.00042  Score=50.46  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.00041  Score=48.42  Aligned_cols=23  Identities=13%  Similarity=-0.026  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+|+|.+||||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998863

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.99  E-value=0.00045  Score=51.23  Aligned_cols=59  Identities=15%  Similarity=0.034  Sum_probs=40.9

Q ss_pred             EeCCCcc-cccccccccccCCcEEEEEEeCCChhhHHh--hhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           75 WDTAGQE-DYNRLRPLSYRGADVFILAFSLISRPSYEN--ISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        75 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      -.+||+. .........+..+|+++.|+|+.++.+...  +.  .|+       .+.|+++|+||+|+.+.
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~--~~l-------~~kp~ilVlNK~DL~~~   65 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIE--DIL-------KNKPRIMLLNKADKADA   65 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHH--HHC-------SSSCEEEEEECGGGSCH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHH--HHH-------CCCCEEEEEECcccCCH
Confidence            3457774 445556677899999999999999877642  22  333       47899999999999753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.99  E-value=0.00049  Score=47.99  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+++|++||||||+...|.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHH
Confidence            3479999999999999998886

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.99  E-value=0.00041  Score=50.76  Aligned_cols=22  Identities=18%  Similarity=0.031  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.99  E-value=0.00044  Score=50.87  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.98  E-value=0.0004  Score=50.86  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.98  E-value=0.00037  Score=52.06  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -.++++|++|+|||||++.|.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            358899999999999999998654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.98  E-value=0.00041  Score=51.17  Aligned_cols=22  Identities=14%  Similarity=0.065  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++|+|++|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.98  E-value=0.00045  Score=47.63  Aligned_cols=23  Identities=22%  Similarity=0.034  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .-++++|++|+|||||+++|+..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999999853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.98  E-value=0.00033  Score=49.64  Aligned_cols=22  Identities=18%  Similarity=0.170  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999988764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.96  E-value=0.00045  Score=48.24  Aligned_cols=24  Identities=17%  Similarity=-0.004  Sum_probs=20.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...-|+++|++|+||||+++.|.+
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999987764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.96  E-value=0.00053  Score=47.20  Aligned_cols=23  Identities=22%  Similarity=0.117  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998863

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.96  E-value=0.0005  Score=48.40  Aligned_cols=20  Identities=15%  Similarity=-0.014  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.96  E-value=0.00049  Score=50.96  Aligned_cols=22  Identities=27%  Similarity=0.209  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4889999999999999988754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.95  E-value=0.00042  Score=48.97  Aligned_cols=23  Identities=17%  Similarity=-0.016  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.95  E-value=0.00063  Score=46.68  Aligned_cols=23  Identities=9%  Similarity=-0.083  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+|+|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988853

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.95  E-value=0.00064  Score=46.60  Aligned_cols=22  Identities=9%  Similarity=-0.050  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+++|.+||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999886

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.95  E-value=0.00048  Score=51.70  Aligned_cols=21  Identities=19%  Similarity=0.056  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++|+|++|+|||||++.|.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999998874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.94  E-value=0.0004  Score=47.56  Aligned_cols=23  Identities=26%  Similarity=0.101  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-.++++|++|+|||+|+..+.+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999988864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.94  E-value=0.00059  Score=46.81  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.93  E-value=0.00049  Score=51.48  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ..++++|++|+|||||++.|.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999998

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.93  E-value=0.00015  Score=54.44  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -.++++|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.93  E-value=0.00048  Score=50.28  Aligned_cols=22  Identities=23%  Similarity=0.222  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.93  E-value=0.00055  Score=48.23  Aligned_cols=21  Identities=14%  Similarity=-0.080  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.92  E-value=0.00049  Score=50.57  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.92  E-value=0.00058  Score=48.86  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ....|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999988863

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.92  E-value=0.00056  Score=46.77  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+++|.+|+||||+.+.|.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            4569999999999999999886

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.92  E-value=0.0003  Score=50.21  Aligned_cols=23  Identities=17%  Similarity=0.127  Sum_probs=15.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh-cC
Q 044772           23 IKCVTVRDGAVGKTCLLISYT-GN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~-~~   45 (159)
                      --++|+|++|+|||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358899999999999999998 53

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.91  E-value=0.00055  Score=47.73  Aligned_cols=22  Identities=9%  Similarity=0.068  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999998875

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.91  E-value=0.0006  Score=46.72  Aligned_cols=21  Identities=14%  Similarity=0.014  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ..|+++|++||||||+...|.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999885

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.90  E-value=0.00061  Score=46.73  Aligned_cols=21  Identities=19%  Similarity=-0.065  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ..|+|.|++||||||+.+.|.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            469999999999999998875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.89  E-value=0.00067  Score=47.01  Aligned_cols=21  Identities=14%  Similarity=0.139  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|+|+|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999988864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.88  E-value=0.00064  Score=48.09  Aligned_cols=22  Identities=14%  Similarity=-0.002  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|.++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.88  E-value=0.00049  Score=52.68  Aligned_cols=24  Identities=13%  Similarity=0.123  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .-+++|+|++|+|||||++.|.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999988754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.87  E-value=0.00078  Score=48.67  Aligned_cols=24  Identities=8%  Similarity=-0.010  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +..+|+|+|++||||||+..+|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.87  E-value=0.00065  Score=49.89  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999887654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.85  E-value=0.00088  Score=46.86  Aligned_cols=24  Identities=17%  Similarity=-0.026  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ...|.++|++|+||||+++.|...
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.85  E-value=0.00084  Score=46.10  Aligned_cols=22  Identities=9%  Similarity=0.013  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+++|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999998875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.84  E-value=0.0008  Score=49.94  Aligned_cols=24  Identities=17%  Similarity=-0.007  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...-|++.|++||||||+..+|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.83  E-value=0.00032  Score=48.24  Aligned_cols=21  Identities=24%  Similarity=0.188  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+.|+|++|+|||||++.|.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999998875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.83  E-value=0.00075  Score=47.72  Aligned_cols=23  Identities=17%  Similarity=0.124  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988853

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.83  E-value=0.00084  Score=46.79  Aligned_cols=22  Identities=9%  Similarity=-0.046  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.82  E-value=0.00062  Score=52.21  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999887643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.82  E-value=0.00088  Score=46.78  Aligned_cols=22  Identities=18%  Similarity=0.046  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +.|.++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.82  E-value=0.00058  Score=48.38  Aligned_cols=22  Identities=18%  Similarity=0.009  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+|+|++||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999998885

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.82  E-value=0.00082  Score=47.54  Aligned_cols=21  Identities=14%  Similarity=-0.009  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|+++|+|||||+|...+|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.82  E-value=0.00071  Score=48.12  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+|+|.+||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999886

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.80  E-value=0.00048  Score=51.73  Aligned_cols=22  Identities=18%  Similarity=0.107  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++|+|++|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999888653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.80  E-value=0.0007  Score=46.10  Aligned_cols=21  Identities=19%  Similarity=0.102  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|+|+|++||||||+...|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.78  E-value=0.00085  Score=47.45  Aligned_cols=24  Identities=13%  Similarity=-0.047  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988853

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.78  E-value=0.00077  Score=51.64  Aligned_cols=23  Identities=22%  Similarity=0.169  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999887643

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.78  E-value=0.001  Score=50.07  Aligned_cols=25  Identities=16%  Similarity=-0.043  Sum_probs=21.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ....-+.|+|++|||||||++.|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3456789999999999999988764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.78  E-value=0.00074  Score=50.62  Aligned_cols=22  Identities=23%  Similarity=0.120  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .--++++|++||||||+++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4578999999999999999886

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.77  E-value=0.00077  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4889999999999999988754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.77  E-value=0.00093  Score=47.76  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ....-|+|+|++|+||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34467899999999999999988754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.75  E-value=0.00089  Score=47.18  Aligned_cols=21  Identities=10%  Similarity=0.020  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.75  E-value=0.00084  Score=51.56  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999887643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.75  E-value=0.00083  Score=51.54  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999887643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.74  E-value=0.00085  Score=51.85  Aligned_cols=23  Identities=30%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999887643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.73  E-value=0.0009  Score=51.46  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -+.++|++|+|||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            3789999999999999888754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.72  E-value=0.00089  Score=51.61  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999887643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.72  E-value=0.00095  Score=45.28  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+++.|++|+|||+|++.+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999988864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.72  E-value=0.0011  Score=46.12  Aligned_cols=24  Identities=17%  Similarity=-0.071  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ...|+|+|.+||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            356999999999999999988753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.71  E-value=0.00088  Score=50.14  Aligned_cols=24  Identities=25%  Similarity=0.036  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..--++++|++||||||++..+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345689999999999999998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.71  E-value=0.00094  Score=51.48  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999887643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.71  E-value=0.00089  Score=48.58  Aligned_cols=25  Identities=16%  Similarity=0.052  Sum_probs=21.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .....|+++|++||||||+...|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.70  E-value=0.00068  Score=46.27  Aligned_cols=22  Identities=18%  Similarity=-0.141  Sum_probs=15.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+|.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999886

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.70  E-value=0.00088  Score=51.34  Aligned_cols=21  Identities=14%  Similarity=0.142  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++|+|++|+|||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.69  E-value=0.00097  Score=45.94  Aligned_cols=22  Identities=14%  Similarity=-0.087  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|+++|.+||||||+.+.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999998885

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.69  E-value=0.001  Score=46.51  Aligned_cols=23  Identities=13%  Similarity=-0.132  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998863

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.66  E-value=0.0011  Score=47.97  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      ++++|++|+|||+|++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999988753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.66  E-value=0.0013  Score=44.31  Aligned_cols=21  Identities=10%  Similarity=-0.035  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.66  E-value=0.0013  Score=47.46  Aligned_cols=24  Identities=13%  Similarity=-0.022  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...-|.|+|++|+|||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999998865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.65  E-value=0.00076  Score=45.16  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -.++++|++|+|||+|++.+.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999988753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.65  E-value=0.0011  Score=48.27  Aligned_cols=21  Identities=19%  Similarity=0.116  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998863

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.65  E-value=0.001  Score=48.96  Aligned_cols=21  Identities=19%  Similarity=0.180  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      ++++|++|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.64  E-value=0.0013  Score=45.53  Aligned_cols=25  Identities=12%  Similarity=-0.064  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +...|+|+|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4568999999999999999988754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.64  E-value=0.0014  Score=45.73  Aligned_cols=23  Identities=13%  Similarity=-0.240  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.62  E-value=0.00076  Score=51.54  Aligned_cols=23  Identities=26%  Similarity=0.213  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999887643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.62  E-value=0.0018  Score=44.52  Aligned_cols=24  Identities=21%  Similarity=0.039  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +...|+++|.+|+||||++..|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999988753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.62  E-value=0.0016  Score=48.51  Aligned_cols=24  Identities=13%  Similarity=-0.076  Sum_probs=20.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .....|.|+|++|||||||++.|.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999998664

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.61  E-value=0.0011  Score=51.09  Aligned_cols=21  Identities=14%  Similarity=0.134  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++|+|++|+|||||++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.61  E-value=0.0013  Score=46.73  Aligned_cols=21  Identities=10%  Similarity=-0.067  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.61  E-value=0.0011  Score=50.88  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++|+|++|+|||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.60  E-value=0.0011  Score=45.87  Aligned_cols=23  Identities=9%  Similarity=-0.067  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+++|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988863

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.60  E-value=0.0012  Score=46.51  Aligned_cols=21  Identities=14%  Similarity=0.219  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999998873

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.59  E-value=0.0014  Score=45.03  Aligned_cols=22  Identities=23%  Similarity=0.158  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-+.++|.+|+|||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998874

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.59  E-value=0.0012  Score=51.30  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4899999999999999988753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.59  E-value=0.0013  Score=44.93  Aligned_cols=21  Identities=14%  Similarity=-0.065  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.+|+|++|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999998753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.59  E-value=0.00049  Score=48.23  Aligned_cols=21  Identities=19%  Similarity=0.186  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -|+|+|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.58  E-value=0.0011  Score=50.14  Aligned_cols=23  Identities=17%  Similarity=0.151  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999988643

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.58  E-value=0.0015  Score=45.59  Aligned_cols=24  Identities=17%  Similarity=-0.069  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...-|.++|++|+|||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999988764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.57  E-value=0.0016  Score=49.27  Aligned_cols=25  Identities=20%  Similarity=0.090  Sum_probs=21.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...--++++|++|+||||++..|.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.56  E-value=0.0016  Score=47.44  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|+++|.+||||||+...|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.56  E-value=0.0014  Score=44.18  Aligned_cols=21  Identities=14%  Similarity=0.025  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.55  E-value=0.0018  Score=48.95  Aligned_cols=24  Identities=17%  Similarity=-0.094  Sum_probs=20.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...+-|.|+|++|||||||++.|.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999998775

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.55  E-value=0.0016  Score=47.25  Aligned_cols=22  Identities=14%  Similarity=-0.013  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...|.|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999887

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.52  E-value=0.0017  Score=48.57  Aligned_cols=24  Identities=17%  Similarity=-0.051  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...-|.|+|++|+|||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.51  E-value=0.0015  Score=50.18  Aligned_cols=24  Identities=25%  Similarity=0.036  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..--++++|++||||||++..|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            345689999999999999988764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.49  E-value=0.0016  Score=44.51  Aligned_cols=21  Identities=24%  Similarity=0.132  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|+|+|.+||||||+...|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.49  E-value=0.0016  Score=47.81  Aligned_cols=22  Identities=32%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||+|++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999988753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.49  E-value=0.0016  Score=44.66  Aligned_cols=21  Identities=14%  Similarity=-0.125  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.49  E-value=0.00076  Score=51.62  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999887643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.48  E-value=0.002  Score=45.33  Aligned_cols=23  Identities=9%  Similarity=0.037  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.48  E-value=0.0019  Score=46.70  Aligned_cols=27  Identities=11%  Similarity=-0.004  Sum_probs=21.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+.+.|.|.|.+||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            334567899999999999999988754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.48  E-value=0.0011  Score=48.68  Aligned_cols=57  Identities=9%  Similarity=0.050  Sum_probs=38.2

Q ss_pred             CCCccc-ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           77 TAGQED-YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        77 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +||+.. ........+.++|.++.|+|+.++.+...... .++        +.|.++|.||+||.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll--------~k~~iivlNK~DL~~~   61 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS--------RKETIILLNKVDIADE   61 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT--------TSEEEEEEECGGGSCH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc--------CCCcEEEEECccCCCH
Confidence            366642 33355667889999999999998876654321 221        6899999999999753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.47  E-value=0.0015  Score=51.09  Aligned_cols=22  Identities=14%  Similarity=0.060  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++|+|++|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.46  E-value=0.0016  Score=52.03  Aligned_cols=24  Identities=21%  Similarity=0.106  Sum_probs=20.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..--++|+|++|+|||||+..|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345689999999999999988763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.46  E-value=0.0016  Score=49.19  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.45  E-value=0.0023  Score=43.69  Aligned_cols=23  Identities=13%  Similarity=0.004  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|+++|.+|+||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999988864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.45  E-value=0.0014  Score=44.37  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+++.|++|+|||+|+..+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.43  E-value=0.0016  Score=48.12  Aligned_cols=21  Identities=10%  Similarity=0.131  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++|+|++|+|||||+..+.+
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999988764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.41  E-value=0.0019  Score=45.23  Aligned_cols=21  Identities=24%  Similarity=0.014  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++++|++|+|||+|+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999986

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.40  E-value=0.002  Score=45.85  Aligned_cols=22  Identities=14%  Similarity=-0.010  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++++|++|+|||+|+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999999874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0015  Score=51.68  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -.++|+|++|+|||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36999999999999999988754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.38  E-value=0.0022  Score=45.28  Aligned_cols=23  Identities=13%  Similarity=-0.007  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+++.|++|+|||+|+..+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.38  E-value=0.0015  Score=47.63  Aligned_cols=25  Identities=20%  Similarity=0.149  Sum_probs=20.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+...|+|.|..|+||||+++.|..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999987764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.37  E-value=0.0025  Score=42.97  Aligned_cols=22  Identities=18%  Similarity=0.001  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.|+|.|.+||||||+...|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.36  E-value=0.0024  Score=46.09  Aligned_cols=23  Identities=9%  Similarity=0.052  Sum_probs=19.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ..+.|++.|++|+||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999998876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.35  E-value=0.0025  Score=47.06  Aligned_cols=25  Identities=8%  Similarity=-0.007  Sum_probs=21.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      +...+.|+|.|.+||||||+.+.|.
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3456789999999999999998886

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.34  E-value=0.0026  Score=42.50  Aligned_cols=19  Identities=21%  Similarity=0.300  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      .+|+|++|+|||+|+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999998875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.34  E-value=0.0022  Score=48.96  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ++.++|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999998764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.33  E-value=0.002  Score=51.67  Aligned_cols=23  Identities=26%  Similarity=0.196  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++|+|++|||||||++.+.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            59999999999999999987543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.33  E-value=0.0015  Score=49.06  Aligned_cols=24  Identities=21%  Similarity=0.068  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      --++|+|.+|+|||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            346789999999999999999653

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.32  E-value=0.0023  Score=46.27  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..++++|++|+|||+|++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3599999999999999998875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.32  E-value=0.0023  Score=44.93  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=19.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...-|+++|.+|+||||+.+.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999988753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.30  E-value=0.003  Score=46.70  Aligned_cols=22  Identities=14%  Similarity=0.116  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+++|.+||||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.28  E-value=0.0028  Score=43.99  Aligned_cols=22  Identities=27%  Similarity=0.146  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.28  E-value=0.0022  Score=46.66  Aligned_cols=23  Identities=17%  Similarity=-0.152  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-.|+++|++|+||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999988753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.25  E-value=0.0036  Score=44.82  Aligned_cols=24  Identities=13%  Similarity=-0.096  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +..-|++.|++|+||||++++|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456789999999999999988864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.21  E-value=0.0028  Score=44.45  Aligned_cols=21  Identities=19%  Similarity=0.139  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -+++.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999988863

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.19  E-value=0.003  Score=43.80  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+++.|++|+|||+|+..+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999988864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.19  E-value=0.0028  Score=49.84  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ++.++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999888754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.17  E-value=0.0086  Score=44.90  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=37.6

Q ss_pred             cccccccCCcEEEEEEeCCChhh-HHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           86 LRPLSYRGADVFILAFSLISRPS-YENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        86 ~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      +.+..+.++|.+++|+|+.+|.. ...+.  +++.....  .++|.+||.||+||.+.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~--r~L~~~~~--~~~~~vivlnK~DL~~~  132 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLD--RFLVLVEA--NDIQPIICITKMDLIED  132 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHH--HHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHH--HHHHHHHH--CCCCEEEEEECCccCch
Confidence            33456789999999999987653 33333  55543332  36899999999999765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.16  E-value=0.0033  Score=50.74  Aligned_cols=23  Identities=17%  Similarity=0.163  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999888643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.15  E-value=0.0029  Score=51.45  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999999999988754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.15  E-value=0.0029  Score=50.34  Aligned_cols=21  Identities=10%  Similarity=0.185  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++|+|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999998864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.12  E-value=0.0053  Score=47.88  Aligned_cols=24  Identities=17%  Similarity=0.011  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...-|+++|.+||||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445688999999999999999874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.12  E-value=0.003  Score=46.31  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999988874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.10  E-value=0.0033  Score=51.07  Aligned_cols=23  Identities=17%  Similarity=0.147  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999887643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.06  E-value=0.0034  Score=50.68  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+.++|++|+|||||++.+.+-.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999887643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.04  E-value=0.0038  Score=47.85  Aligned_cols=19  Identities=21%  Similarity=0.298  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      .+|+|++|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5689999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.04  E-value=0.0043  Score=46.02  Aligned_cols=23  Identities=9%  Similarity=-0.226  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +.-+++.|+||+|||+|++.+..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678889999999999998874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.03  E-value=0.004  Score=44.82  Aligned_cols=22  Identities=18%  Similarity=0.120  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+++.|++|+|||+|++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998865

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.03  E-value=0.0037  Score=46.04  Aligned_cols=23  Identities=17%  Similarity=-0.008  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+++.|++|+|||+|++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.02  E-value=0.0038  Score=45.66  Aligned_cols=24  Identities=17%  Similarity=0.008  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ...+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999988753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.02  E-value=0.0039  Score=44.32  Aligned_cols=21  Identities=14%  Similarity=0.082  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++++|++|+|||+|+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.01  E-value=0.0044  Score=40.91  Aligned_cols=25  Identities=8%  Similarity=-0.203  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3469999999999999999887543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.99  E-value=0.0047  Score=44.14  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=21.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ......|.|+|.+|+||||+.+.|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999988764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.98  E-value=0.004  Score=48.04  Aligned_cols=22  Identities=18%  Similarity=-0.032  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0041  Score=50.90  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999887643

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.97  E-value=0.0045  Score=43.63  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ...|+|+|++|+|||+|...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999999754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.95  E-value=0.0034  Score=51.21  Aligned_cols=22  Identities=23%  Similarity=0.137  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999988753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.92  E-value=0.0041  Score=47.00  Aligned_cols=23  Identities=13%  Similarity=-0.064  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-.++|.|++|+|||+|++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.91  E-value=0.0044  Score=46.30  Aligned_cols=22  Identities=23%  Similarity=0.092  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.+++.|++|+|||+|++.+.+
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999988864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.90  E-value=0.0062  Score=44.97  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=19.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ....+++.|++|+|||++++.+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999997554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.89  E-value=0.0044  Score=46.17  Aligned_cols=22  Identities=23%  Similarity=0.116  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .-.++++|++|+||||++..|.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999998775

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.86  E-value=0.0069  Score=42.24  Aligned_cols=24  Identities=8%  Similarity=-0.004  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+.|.+.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.86  E-value=0.0071  Score=44.02  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .....+++.|++|+|||+|+..+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999988753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.86  E-value=0.0029  Score=51.39  Aligned_cols=21  Identities=19%  Similarity=0.099  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++++|++|+|||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            589999999999999987664

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.85  E-value=0.0049  Score=45.78  Aligned_cols=23  Identities=17%  Similarity=0.093  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ..+++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            45899999999999999988753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.83  E-value=0.0068  Score=45.79  Aligned_cols=22  Identities=23%  Similarity=0.187  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|+|+|++|||||+|...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.82  E-value=0.0053  Score=50.23  Aligned_cols=23  Identities=22%  Similarity=0.177  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999887643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.82  E-value=0.0054  Score=45.98  Aligned_cols=23  Identities=17%  Similarity=0.005  Sum_probs=19.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...-++++|++|+||||++..|.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHH
Confidence            34568899999999999998775

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.81  E-value=0.005  Score=49.68  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.++|++|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999887643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.80  E-value=0.0038  Score=50.81  Aligned_cols=22  Identities=14%  Similarity=0.123  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999877643

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.79  E-value=0.0054  Score=46.56  Aligned_cols=22  Identities=18%  Similarity=0.104  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.78  E-value=0.0061  Score=49.14  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.|+|++|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998643

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.78  E-value=0.0044  Score=46.68  Aligned_cols=20  Identities=10%  Similarity=0.074  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999988765

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.76  E-value=0.0059  Score=44.93  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999988864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.74  E-value=0.0069  Score=41.91  Aligned_cols=21  Identities=14%  Similarity=0.181  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999854

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.73  E-value=0.0045  Score=43.85  Aligned_cols=21  Identities=19%  Similarity=0.186  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+++.|+||+|||+++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999887764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.73  E-value=0.0069  Score=42.48  Aligned_cols=19  Identities=21%  Similarity=0.300  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      .+|+|++|+|||||+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.72  E-value=0.006  Score=49.92  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+.|+|++|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988643

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.72  E-value=0.0055  Score=46.68  Aligned_cols=23  Identities=17%  Similarity=-0.016  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+.|+|++|+|||+|+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.72  E-value=0.0065  Score=42.10  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|.|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999988754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.68  E-value=0.0072  Score=47.03  Aligned_cols=25  Identities=12%  Similarity=0.185  Sum_probs=21.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ..+.+|++++|...||||||+.++.
T Consensus        37 ~~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           37 YRATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hhccceEEEecCCCCchhhHHHHHH
Confidence            3568999999999999999998664

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.64  E-value=0.0068  Score=44.76  Aligned_cols=22  Identities=23%  Similarity=0.152  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.++++|++|+|||+++..+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999988764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.64  E-value=0.0066  Score=45.75  Aligned_cols=22  Identities=14%  Similarity=0.205  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+++.|++|+|||+++..+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.62  E-value=0.0097  Score=45.23  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+|+|++|||||+|...|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.62  E-value=0.0097  Score=44.73  Aligned_cols=22  Identities=27%  Similarity=0.212  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+|+|++|||||+|...|..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            4578899999999999998864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.61  E-value=0.0074  Score=45.91  Aligned_cols=22  Identities=36%  Similarity=0.250  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+|+|++|||||||..+|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4688999999999999988864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.60  E-value=0.0072  Score=45.06  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      --++|.|++|+|||+|++.+...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHH
Confidence            35889999999999999998754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.59  E-value=0.0078  Score=45.35  Aligned_cols=21  Identities=29%  Similarity=0.178  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -|+|+|++|||||+|...|..
T Consensus         5 ~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            478899999999999999874

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.57  E-value=0.0062  Score=46.07  Aligned_cols=23  Identities=13%  Similarity=-0.070  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-.+++.|++|+|||+|++.+..
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            44699999999999999998874

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.57  E-value=0.0099  Score=45.51  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=19.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...+|+++|++|+||||+...|.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34579999999999999997654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.0075  Score=49.38  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (159)
                      +.++|++|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999887644

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.52  E-value=0.0077  Score=45.26  Aligned_cols=23  Identities=13%  Similarity=0.076  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ..+++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            57999999999999999988753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.51  E-value=0.0079  Score=45.11  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999888643

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.51  E-value=0.0074  Score=45.08  Aligned_cols=22  Identities=9%  Similarity=0.066  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++|.|++|+|||+|++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999988753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.49  E-value=0.01  Score=42.42  Aligned_cols=22  Identities=23%  Similarity=0.147  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|++.|..|+||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.49  E-value=0.0092  Score=51.35  Aligned_cols=24  Identities=13%  Similarity=0.205  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      .+.++|++|+|||||++.+.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            489999999999999999987654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.47  E-value=0.0092  Score=41.15  Aligned_cols=23  Identities=13%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .-+++.|++|+|||++...|+..
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46899999999999999988853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.46  E-value=0.0078  Score=48.27  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      ++|+|++|+|||||++.|+
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.45  E-value=0.0092  Score=44.69  Aligned_cols=23  Identities=13%  Similarity=0.023  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+++.|++|+|||+|++.+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            34799999999999999998864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.45  E-value=0.008  Score=47.56  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -+++++|++|+|||++++.+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999987753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.45  E-value=0.0046  Score=40.75  Aligned_cols=22  Identities=0%  Similarity=-0.109  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|++.|++|+|||++.+.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            4699999999999999877653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.41  E-value=0.0086  Score=46.54  Aligned_cols=20  Identities=15%  Similarity=0.027  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      -++|+|++|+|||+|+..|.
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            48899999999999999876

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.41  E-value=0.01  Score=44.40  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+++.|++|+|||.|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999987764

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.41  E-value=0.032  Score=44.07  Aligned_cols=23  Identities=13%  Similarity=0.053  Sum_probs=18.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...=|.|+|+.++|||+|+|.|+
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            44556799999999999999554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.40  E-value=0.0084  Score=45.37  Aligned_cols=22  Identities=14%  Similarity=0.214  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.+++.|++|+|||+|+..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.37  E-value=0.0094  Score=41.80  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|+++|.+|+||||+...|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999987754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.36  E-value=0.0041  Score=45.08  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998864

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.35  E-value=0.0091  Score=45.30  Aligned_cols=22  Identities=14%  Similarity=-0.001  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.+++.|++|+|||+|++.+..
T Consensus        46 ~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999988875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.011  Score=46.43  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +..|++.||||+|||+|+..+.+
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.34  E-value=0.022  Score=42.42  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=16.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      +++-|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            344466999999999998643

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.34  E-value=0.0068  Score=49.05  Aligned_cols=24  Identities=13%  Similarity=0.068  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +...++|+|.+|||||||++.|.+
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHH
Confidence            345799999999999999988864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.32  E-value=0.0093  Score=48.12  Aligned_cols=21  Identities=29%  Similarity=0.159  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++++|++|+|||+|++.+.+
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.29  E-value=0.01  Score=44.40  Aligned_cols=23  Identities=17%  Similarity=0.047  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ..+++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35999999999999999988643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.28  E-value=0.012  Score=46.23  Aligned_cols=22  Identities=18%  Similarity=0.141  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-+++.|+||+|||+|+..+.+
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999998875

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.25  E-value=0.011  Score=45.14  Aligned_cols=23  Identities=13%  Similarity=0.095  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+++.|++|+|||+++..+..
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999988874

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.23  E-value=0.012  Score=44.49  Aligned_cols=19  Identities=21%  Similarity=0.300  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      .+|+|++|+|||+|+..+.
T Consensus        26 ~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3689999999999999764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.21  E-value=0.022  Score=45.73  Aligned_cols=23  Identities=30%  Similarity=0.088  Sum_probs=19.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...-|+++|.+|+||||+..+|.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La   56 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLT   56 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            44568999999999999998874

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.21  E-value=0.013  Score=42.46  Aligned_cols=24  Identities=8%  Similarity=0.069  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ..+++.|++|+|||+|++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            469999999999999999887543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.19  E-value=0.0067  Score=53.85  Aligned_cols=21  Identities=14%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +|.+||++|+|||||++.|.+
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.19  E-value=0.011  Score=46.39  Aligned_cols=22  Identities=27%  Similarity=0.146  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -.+++.|++|+|||+|++.+.+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999988864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.013  Score=46.00  Aligned_cols=23  Identities=17%  Similarity=0.034  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +..|++.|+||+|||+|+..+.+
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999875

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.17  E-value=0.02  Score=44.98  Aligned_cols=23  Identities=17%  Similarity=-0.060  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...-|+++|++|+||||++..|.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999998876

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.17  E-value=0.012  Score=44.86  Aligned_cols=22  Identities=14%  Similarity=0.057  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|++.|++|+|||+|++.+..
T Consensus        85 ~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            4599999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-32
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-30
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	9e-30
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	9e-30
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-29
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-28
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-27
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-26
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-25
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-25
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-25
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-24
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-24
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-24
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-24
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-23
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-23
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	7e-22
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-21
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-20
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-20
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-20
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-20
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-19
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-19
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	4e-19
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-18
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	7e-18
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-17
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-17
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-17
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-17
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-16
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-16
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-16
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-16
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-14
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-14
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	4e-13
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-11
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-11
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-11
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-11
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-11
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-11
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	9e-11
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-10
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-10
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	8e-10
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-09
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-09
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-09
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-08
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-08
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	5e-06
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	7e-05

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (282), Expect = 1e-32
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 2/127 (1%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE 81
            K + + +  VGK+CLL+ ++ +T+  DY+ T+  +F    V +DG+TV L +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
            +  +    YRG+   I+ + +  + S+  + K       R+   +V  +LVG K DL+ 
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 125

Query: 142 DRQFHLD 148
            R    D
Sbjct: 126 KRVVEYD 132

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 2e-30
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
           +K + + D  VGK+CLL+ +  + F   ++ T+  +F    V ++G+ V L +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
            +  +    YRGA   IL + +    ++ NI +        H      ++LVG K D+
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVN-EHANDEAQLLLVGNKSDM 119

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 9e-30
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 2/125 (1%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
            K V + +  VGKTCL+  +T   FP     T+  +F    V ++G  V L +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
            +  +    YR A+  IL + +    S+  +  +      ++ +  V  VLVG K+DL +
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 124

Query: 142 DRQFH 146
            R+  
Sbjct: 125 RREVS 129

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (261), Expect = 9e-30
 Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 2/125 (1%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGKTC+L  ++ + F + ++ T+  +F    + +DG+ + L +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
            +  +    YRGA   +L + + +  S++NI +        H +  V  +++G K D+  
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVND 125

Query: 142 DRQFH 146
            RQ  
Sbjct: 126 KRQVS 130

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 6e-29
 Identities = 77/122 (63%), Positives = 96/122 (78%), Gaps = 1/122 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           IKCV V DGAVGKTCLLISYT N FP++YVPTVFDN++  VM+ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS++S  S+EN+ K+KWVPE+ H+ P  P +LVGT++DLR D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENV-KEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 143 RQ 144
             
Sbjct: 123 PS 124

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 6e-28
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K V + D  VGK+ LL  +T N F  +   T+   F+  ++ VDG+T+   +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK 141
           Y R+    YRGA   +L + +    +YEN+  ++W+ ELR +A  ++ I+LVG K DLR 
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDLRH 123

Query: 142 DRQFHLD 148
            R    D
Sbjct: 124 LRAVPTD 130

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 2e-27
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-----------DGRTVN 71
           IK + + D  VGKT  L  YT N F   ++ TV  +F    +V               V+
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 72  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIV 131
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ N+       +   Y  +  IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 132 LVGTKLDLRKDRQFH 146
           L+G K DL   R+ +
Sbjct: 126 LIGNKADLPDQREVN 140

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 2e-26
 Identities = 86/124 (69%), Positives = 103/124 (83%), Gaps = 1/124 (0%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + IKCV V DGAVGKTCLLISYT N FP +Y+PTVFDN+SANVMVDG+ VNLGLWDTAGQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           EDY+RLRPLSY   DV ++ FSL+S  S+EN+ + KW PE+RH+ P+ PI+LVGTKLDLR
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENV-RAKWYPEVRHHCPNTPIILVGTKLDLR 122

Query: 141 KDRQ 144
            D+ 
Sbjct: 123 DDKD 126

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.2 bits (233), Expect = 1e-25
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANV-MVDGRTVNLGLWDTAGQED 82
           K + + D  VGK+CLL+ +T   F   +  T+   F A +  +DG+ + L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  +    YRGA   +L + +  R ++ ++         +H + ++ I+L+G K DL   
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 143 RQFHLDY 149
           R    + 
Sbjct: 124 RDVKREE 130

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.6 bits (229), Expect = 4e-25
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K + + + +VGKT  L  Y  ++F   +V TV  +F    +  + + + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y  +    YRGA  FIL +  I+     N  +        +   +  ++LVG K D+  +
Sbjct: 67  YRTITTAYYRGAMGFILMYD-ITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 143 RQFHLDYPGAY 153
           R    +     
Sbjct: 126 RVVSSERGRQL 136

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.5 bits (226), Expect = 9e-25
 Identities = 39/126 (30%), Positives = 63/126 (50%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V +  G VGK+ L + +   TF   Y PT+ D +   + VD     L + DTAG E 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  +R L  +    FIL +SL+++ S+++I   +           VP++LVG K+DL  +
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 143 RQFHLD 148
           R+    
Sbjct: 124 REVSSS 129

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.5 bits (226), Expect = 1e-24
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQED 82
           K + + +   GK+CLL  +    F  D   T+   F S  + V G+ V L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  +    YRGA   +L + + SR +Y  ++           + ++ I+L G K DL  D
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR-MLASQNIVIILCGNKKDLDAD 125

Query: 143 RQFHLDYPGAY 153
           R+        +
Sbjct: 126 REVTFLEASRF 136

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (225), Expect = 1e-24
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDN-FSANVMVDGRTVNLGLWDTAGQE 81
            K + + D  VGK+CLL  +T   F  D   T+     +  + V G+ + L +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
            +  +    YRGA   ++ + +  R +Y ++             P+  I+L+G K DL  
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEA 123

Query: 142 DRQFHLD 148
            R    +
Sbjct: 124 QRDVTYE 130

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 3e-24
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTV-FDNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + +VGKT L+  +  ++F   Y  T+  D  S  + ++ RT+ L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  L P   R +   ++ + + +  S++    K            V I+LVG K DL   
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 143 RQFHLDYPGAY 153
           RQ  ++     
Sbjct: 121 RQVSIEEGERK 131

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 5e-24
 Identities = 75/139 (53%), Positives = 104/139 (74%), Gaps = 3/139 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           +KCV V DGAVGKTCLL+SY  + FP +YVPTVFD+++ +V V G+   LGL+DTAGQED
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DVF++ FS+++  S++N+ K++WVPEL+ YAP+VP +L+GT++DLR D
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNV-KEEWVPELKEYAPNVPFLLIGTQIDLRDD 128

Query: 143 RQ--FHLDYPGAYTISTEQ 159
            +    L+      I  EQ
Sbjct: 129 PKTLARLNDMKEKPICVEQ 147

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.3 bits (220), Expect = 1e-23
 Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 1/128 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V V D   GKT LL  +  + FP +YVPTVF+N++A+  +D + + L LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+ +RPLSY  +D  ++ F +    + +++  KKW  E++ + P+  ++LVG K DLR D
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSV-LKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121

Query: 143 RQFHLDYP 150
               ++  
Sbjct: 122 VSTLVELS 129

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 3e-23
 Identities = 70/128 (54%), Positives = 88/128 (68%), Gaps = 1/128 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V V DGA GKTCLLI  + + FP  YVPTVF+N+ A++ VDG+ V L LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+RLRPLSY   DV ++ FS+ S  S ENI  +KW PE++H+ P+VPI+LVG K DLR D
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENI-PEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 143 RQFHLDYP 150
                +  
Sbjct: 122 EHTRRELA 129

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 7e-22
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQE 81
           +K + + +  VGK+ LL+ +T +TF  +   T+  D     + VDG    L +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
            +  L P  YRGA   IL + +  R ++  +       E       +  +LVG K
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 122

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 1e-21
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTF-PTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQE 81
           K + V D  VGKTCLL+ +    F    ++ TV  +F +  + VDG  V L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
            +  +    YR A   +L + + ++ S++NI +        +    V ++L+G K+D   
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 142 DRQ 144
           +R 
Sbjct: 127 ERV 129

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 1e-20
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-DNFSANVMVDGRTVNLGLWDTAGQED 82
           K V + + AVGK+ L++ +    F      T+     +  V +D  TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           Y+ L P+ YRGA   I+ + + +  S+    K       R  +P++ I L G K DL   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 143 RQF 145
           R  
Sbjct: 127 RAV 129

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 3e-20
 Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 1/119 (0%)

Query: 20  TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
           T++ K V V  G VGK+ L I    N F  +Y PT+ D++   V++DG T  L + DTAG
Sbjct: 2   TEY-KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD 138
           QE+Y+ +R    R  + F+  F++ +  S+E+I + +   +    +  VP+VLVG K D
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (196), Expect = 4e-20
 Identities = 43/127 (33%), Positives = 63/127 (49%)

Query: 20  TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
           ++  K V V  G VGK+ L I +  + F +DY PT+ D+++    VDG    L + DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           QE++  +R    R    F+L F++  R S+  + K              P+VLVG K DL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 140 RKDRQFH 146
              RQ  
Sbjct: 124 ESQRQVP 130

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 79.2 bits (194), Expect = 6e-20
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 4/125 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + V  G VGK+ L + +  + F  DY PT  D++   V++DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK 141
             +R   +R  + F+  FS+    S+       +  ++       +VP +LVG K DL  
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAAT--ADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 142 DRQFH 146
            RQ  
Sbjct: 124 KRQVS 128

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.5 bits (192), Expect = 1e-19
 Identities = 40/130 (30%), Positives = 67/130 (51%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K V V DG VGK+ L I +    F  DY PT+ D++  +  +D +   L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
           + +R    R  D F++ +S+  + S+E++ +   +        S P++LV  K+DL   R
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 144 QFHLDYPGAY 153
           +   D     
Sbjct: 126 KVTRDQGKEM 135

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (188), Expect = 4e-19
 Identities = 35/131 (26%), Positives = 60/131 (45%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            K V +  G VGK+ L + +    F   Y PT+ D++   V VD +   L + DTAG E 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  +R L  +    F L +S+ ++ ++ ++   +           VP++LVG K DL  +
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 143 RQFHLDYPGAY 153
           R    +     
Sbjct: 124 RVVGKEQGQNL 134

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (188), Expect = 4e-19
 Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           K+ + V V  G VGK+ L I +  + F TDY PT+ D+++   ++D R   L + DTAGQ
Sbjct: 5   KY-RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQ 63

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           E++  +R    R  + F+L FS+  R S+E I K +            P++L+G K DL 
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 141 KDRQFH 146
             RQ  
Sbjct: 124 HQRQVT 129

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 2e-18
 Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 8/128 (6%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQE 81
            K + + DG VGK+ L+  Y  N F T    T+   F    + VDG  V + +WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTK 136
            +  LR   YRG+D  +L FS+    S++N+S  K   E  +YA      S P V++G K
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK--EFIYYADVKEPESFPFVILGNK 124

Query: 137 LDLRKDRQ 144
           +D+ + + 
Sbjct: 125 IDISERQV 132

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 7e-18
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           +K        VGK+ L++ +    F  +Y PT+   +     +D   V++ + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
             + R    R  + F+L + +  R S+E +   K + +      +V ++LVG K DL   
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 143 RQFHLD 148
           RQ   +
Sbjct: 122 RQVSTE 127

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSAN--VMVDGRTVNLGLWDTAGQ 80
           +K + + D  VGKT L+  Y  + +   Y  T+  +F      +   +   + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA---PSVPIVLVGTKL 137
           E +  L    YRGAD  +L + + +  S+ENI   +    +        + P V++G K+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 138 DLRKDRQFH 146
           D  + ++  
Sbjct: 123 DAEESKKIV 131

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 3e-17
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
            +      G VGK+ L++ +   TF   Y+PTV D +   +  D     L + DT G   
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKK-WVPELRHYAPSVPIVLVGTKLDLRK 141
           +  ++ LS      FIL +S+ SR S E +      + E++    S+PI+LVG K D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 142 DRQFHLDYPGAY 153
            R+       A 
Sbjct: 123 SREVQSSEAEAL 134

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 3e-17
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 19  ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLG-LWDT 77
           A + +K   + D  VGK+ ++  +  ++F  +  PT+  +F    +     ++   +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 78  AGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKL 137
           AG E +  L P+ YRG+   I+ + +    ++  + K       +H  PS+ + + G K 
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKC 119

Query: 138 DLRKDRQFHLDYPGAY 153
           DL   R+        Y
Sbjct: 120 DLTDVREVMERDAKDY 135

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.2 bits (173), Expect = 8e-17
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDG-RTVNLGLWDTAGQE 81
           IK V + + AVGK+ +++ +  N F  +  PT+   F    +     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
            +  L P+ YR A   ++ + +    S+    +          +  + I LVG K+D+ +
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQ 122

Query: 142 D 142
           +
Sbjct: 123 E 123

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 1e-16
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSA-NVMVDGRTVNLGLWDTAGQED 82
           K V + +G VGKT L++ Y  N F   ++ T+  +F    + + G+ VNL +WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIV 131
           ++ L P+ YR ++  IL + +    S++ +                  +
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI 113

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.1 bits (170), Expect = 2e-16
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDN-FSANVMVDGRTVNLGLWDTAG 79
           +  K + + D  VGKTCL   +    FP     T+  +     V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 80  QEDYNRL-RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLD 138
           QE + +      YR     +  + + +  S+ ++       +    A  +P +LVG K D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 139 LRKDRQFHLD 148
           LR   Q   D
Sbjct: 121 LRSAIQVPTD 130

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 4e-16
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAG 79
           +F K V V DG  GKT  +  +    F   YV T+           +   +   +WDTAG
Sbjct: 3   QF-KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           QE +  LR   Y  A   I+ F           +   W  +L     ++PIVL G K+D+
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFD--VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 119

Query: 140 RKDRQFH 146
           +  +   
Sbjct: 120 KDRKVKA 126

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.7 bits (169), Expect = 4e-16
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMV-DGRTVNLGLWDTAGQE 81
           +K + + D  VGKT L+  Y    F   Y  T+  +F    ++ D R V + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELR---HYAPSVPIVLVGTKLD 138
            +  L    YRGAD  +L F + +  +++ +   +    ++       + P V++G K+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 139 LRKDRQFHLD 148
           L   +     
Sbjct: 123 LENRQVATKR 132

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 39/134 (29%), Positives = 63/134 (47%)

Query: 20  TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
           +K  K   +   +VGK+ L I +    F   Y PT+ + F+  + V+G+  +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           Q++Y+          + +IL +S+ S  S+E I               +PI+LVG K DL
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121

Query: 140 RKDRQFHLDYPGAY 153
             +R    +   A 
Sbjct: 122 HMERVISYEEGKAL 135

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 3e-14
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 4/114 (3%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           ++ + V   A GKT +L         T      F+       V+ + ++  +WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 56

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTK 136
              L    ++     I       R       ++              +++   K
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 4e-13
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM-VDGRTVNLGLWDTAGQE 81
           IK V V +GAVGK+ ++  Y    F  DY  T+  +F    + V+   V L LWDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 82  DYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK 141
           +++ +    YRGA   +L FS   R S+E I    W  ++      +P  LV  K+DL  
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAI--SSWREKVVAEVGDIPTALVQNKIDLLD 120

Query: 142 DRQFHLDYPGAY 153
           D     +     
Sbjct: 121 DSCIKNEEAEGL 132

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 1e-11
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 4/124 (3%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           +  K + V     GKT +L  ++ N           +       +        +WD  GQ
Sbjct: 14  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQ 69

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           E         Y   +  I+      R       ++ +            +++   K D++
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 141 KDRQ 144
           +   
Sbjct: 130 ECMT 133

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 1e-11
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 4/124 (3%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + ++ + +     GKT LL                F+       V  +   L +WD  GQ
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGGQ 70

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
                     +   D+ I       R  +E   ++            VP+++   K DL 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 141 KDRQ 144
               
Sbjct: 131 TAAP 134

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-11
 Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 4/127 (3%)

Query: 20  TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
            K ++ + +   A GKT +L         T      F+       V  + V   +WD  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGG 65

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
           Q+    L    Y G    I       R   +   ++              I++   K DL
Sbjct: 66  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125

Query: 140 RKDRQFH 146
               + H
Sbjct: 126 PDAMKPH 132

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 56.9 bits (136), Expect = 3e-11
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 4/119 (3%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           K ++ + +     GKT +L         T   PT+  N      +  + + L +WD  GQ
Sbjct: 16  KELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV---ETLSYKNLKLNVWDLGGQ 71

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
                     Y      I       +      SK+  +           +++   K D 
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 130

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 5e-11
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 4/124 (3%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + ++ + +     GKT +L  + G    T   PT+  N         +     +WD  GQ
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLN---IWDVGGQ 56

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
           +         +   D  I       R   ++  ++     +        +++   K DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 141 KDRQ 144
               
Sbjct: 117 GALS 120

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 6e-11
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 4/124 (3%)

Query: 20  TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
           T+ ++ + +     GKT +L         T    T+         V  + +   +WD  G
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL 139
                      Y   D  I       R        +              +V+   K D+
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 118

Query: 140 RKDR 143
            +  
Sbjct: 119 EQAM 122

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.1 bits (131), Expect = 9e-11
 Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 4/121 (3%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + +     GKT LL     +   T   PT          +    +    +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
            RL    +   +  +          ++    +            VP V++G K+D     
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 144 Q 144
            
Sbjct: 118 S 118

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 2e-10
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           ++   + D   GK+ L+  +   ++      T  + +   ++VDG+T  + + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISK-KKWVPELRHYAP-SVPIVLVGTKLDLR 140
                      AD  I  FSL    S++ +S+    +  LR      + + LVGT+  + 
Sbjct: 65  AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 141 KDRQFHLDYPGAYTISTEQ 159
                 +    A  +  + 
Sbjct: 120 ASSPRVVGDARARALCADM 138

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 3e-10
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 3/122 (2%)

Query: 23  IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQED 82
           ++   V     GKT  +       F  D +PTV  N      +    V + LWD  GQ  
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59

Query: 83  YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD 142
           +  +     RG    +       +   E    +      +     +P++++G K DL   
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119

Query: 143 RQ 144
             
Sbjct: 120 LD 121

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 8e-10
 Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + +K + +  G  GK+ ++            +               + ++  ++D  GQ
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVE--------THFTFKDLHFKMFDVGGQ 52

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISK---------KKWVPELRHYAPS-VPI 130
               +     + G    I   +L          +         K +     +   +   I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 131 VLVGTKLDLRKDRQ 144
           +L   K DL +++ 
Sbjct: 113 ILFLNKKDLFEEKI 126

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 5/118 (4%)

Query: 30  DGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPL 89
               GKT L +      +  D   ++ D+ +   + + R  +L L D  G E        
Sbjct: 8   LCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLD 66

Query: 90  SY-RGADVFILAFSLISRPSYENISKKKWVPELRHY---APSVPIVLVGTKLDLRKDR 143
            +   A   +      +         +     L        S  +++   K D+   +
Sbjct: 67  RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (122), Expect = 3e-09
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 15/133 (11%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + +K + +  G  GK+  +            VPT           D ++V   + D  GQ
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQ 55

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENI---------SKKKWVPELRHYA-PSVPI 130
               R     +      +   +L                  SK  +   + +    +  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 131 VLVGTKLDLRKDR 143
           +L   K DL +++
Sbjct: 116 ILFLNKKDLLEEK 128

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 4/124 (3%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           K  K V +     GKT LL     +            +      +    +    +D  G 
Sbjct: 12  KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGH 67

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR 140
               R+        +  +               ++           +VPI+++G K+D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 141 KDRQ 144
           +   
Sbjct: 128 EAIS 131

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-08
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 22  FIKCVTVRDGAVGKTCLLISYTGN--TFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAG 79
           + + V + +  VGK+ L   + G   +  +D      D +   +MVDG +  + L D   
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 80  QEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVP-ELRHYAPSVPIVLVGT 135
            +  N              L    I+  +    + +  +          +PI+LVG 
Sbjct: 63  NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 119

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           K + +    VGK+ L   + G              +  +++VDG   +L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR 143
             L        D +++ +S+  + S+E  S+ +           VPI+LVG K DL + R
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 144 QFHLD 148
           +  +D
Sbjct: 122 EVSVD 126

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 6/104 (5%)

Query: 21  KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQ 80
           + +K + +  G  GK+  L             PT   +       + + V   + D  GQ
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54

Query: 81  EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHY 124
               +     +      +   S           ++         
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 98

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.0 bits (90), Expect = 7e-05
 Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 17/130 (13%)

Query: 24  KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY 83
           + + +  G  GK+ ++            V T               VN  ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE---TKFQVDKVNFHMFDVGGQRDE 60

Query: 84  NRLRPLSYRGADVFILAFSLISRPSYENI---------SKKKWVPELRHYAPS-VPIVLV 133
            R     +      I   +  S                +   +     +     + ++L 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 134 GTKLDLRKDR 143
             K DL  ++
Sbjct: 121 LNKQDLLAEK 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.94
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.93
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.88
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.86
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.83
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.82
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.81
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.8
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.8
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.79
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.74
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.67
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.67
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.66
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.65
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.64
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.63
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.58
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.56
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.54
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.52
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.52
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.46
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.46
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.44
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.44
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.41
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.37
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.35
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.32
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.22
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.21
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.2
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.11
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.93
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.81
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.73
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.59
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.52
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.34
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.08
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.0
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.9
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.8
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.8
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.72
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.7
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.7
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.68
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.63
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.59
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.55
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.52
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.46
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.46
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.45
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.44
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.38
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.38
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.38
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.36
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.34
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.3
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.3
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.29
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.28
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.27
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.22
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.21
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.21
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.21
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.2
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.19
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.18
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.17
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.15
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.15
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.14
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.13
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.12
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.1
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.1
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.08
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.08
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.06
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.05
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.05
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.99
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.98
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.94
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.94
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.92
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.88
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.88
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.86
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.85
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.82
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.82
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.8
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.78
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.76
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.76
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.73
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.72
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.72
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.71
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.69
d1okkd2	207	GTPase domain of the signal recognition particle r	96.69
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.66
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.63
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.62
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.6
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.56
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.52
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.49
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.43
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.42
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.42
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.41
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.39
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.37
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.36
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.36
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.35
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.34
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.31
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.28
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.28
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.23
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.19
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.15
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.04
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.95
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.93
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.91
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.9
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.89
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.82
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.79
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.79
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.77
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.75
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.72
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.65
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.56
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.53
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.45
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.44
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.43
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.39
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.37
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.36
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.33
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.32
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.27
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.25
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.2
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.17
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.14
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.98
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.92
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.81
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.81
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.79
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.72
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.69
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.59
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.55
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.54
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.53
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.48
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.38
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.32
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.3
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.11
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.08
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.06
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.04
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.82
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.81
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.78
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.67
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.44
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.23
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.44
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.03
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.96
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.89
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.75
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.55
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.52
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.27
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.7
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.36
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.71
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.49
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.17
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.73
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.52
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.32
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.27
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.22
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.85
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.49
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.47
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.29
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.27
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.21
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.04
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	86.89
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.81
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	86.64
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	86.59
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	86.48
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.48
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.03
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	85.89
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	85.79
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.51
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	84.16
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.4
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	82.06
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	81.61
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.97
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.56

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=189.29  Aligned_cols=133  Identities=30%  Similarity=0.430  Sum_probs=122.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+|+|++|||||||+++|+++.|...+.||.+..+...+.+++..+.+.+||++|.+.+..++..++.+++++|+
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            46789999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |||++++++|..+.  .|+..+.+..  +++|++|||||+|+..+|+|+.++++.||
T Consensus        82 v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a  136 (167)
T d1xtqa1          82 VYSVTSIKSFEVIK--VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA  136 (167)
T ss_dssp             EEETTCHHHHHHHH--HHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             hcccchhhhhhhhh--hhhhhhhhcccccccceeeeccccccccccchhHHHHHHHH
Confidence            99999999999998  8988887653  57999999999999999999988877665

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.7e-32  Score=191.10  Aligned_cols=136  Identities=51%  Similarity=1.009  Sum_probs=120.4

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      +....+||+|+|++|||||||+++|+.+.|...+.+|.+..+...+..++..+.+.+||++|++.+...+..++++++++
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            35788999999999999999999999999999999999877777777888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc------------CccccccCCCccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK------------DRQFHLDYPGAYT  154 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~------------~r~v~~~~~~~~~  154 (159)
                      ++|||++++++|..+.. .|...+....+++|+++||||+|+.+            .|.|+.++++.||
T Consensus        85 ilv~d~t~~~Sf~~~~~-~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a  152 (185)
T d2atxa1          85 LICFSVVNPASFQNVKE-EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA  152 (185)
T ss_dssp             EEEEETTCHHHHHHHHH-THHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred             eeccccchHHHHHHHHH-HHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHH
Confidence            99999999999998765 88888888888999999999999875            4566666655443

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-32  Score=188.69  Aligned_cols=136  Identities=32%  Similarity=0.537  Sum_probs=123.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ++.+.+||+|+|++|||||||+++|+.+++...+.++..+.+...+.+++..+.+.+||++|++.+...+..++++++++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            45678999999999999999999999999999999988877777888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCcccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      |+|||++++.+|..+.  .|+..+.+.  ..++|++|||||+|+...|+++.++++.||.
T Consensus        82 i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~  139 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVG--KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA  139 (173)
T ss_dssp             EEEEETTCHHHHHHHH--HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             eeecccccccccchhh--hhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHH
Confidence            9999999999999998  898887654  3689999999999999999988887776653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4e-32  Score=186.63  Aligned_cols=131  Identities=35%  Similarity=0.582  Sum_probs=120.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|++|||||||+++|..+.+...+.+|.+..+ ......++..+.+.+||++|++.+..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999999999999987655 55667788999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++++|+.+.  .|++.+.+..+++|++|||||+|+.++|+++.+++++||
T Consensus        82 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~  133 (164)
T d1z2aa1          82 FSTTDRESFEAIS--SWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA  133 (164)
T ss_dssp             EETTCHHHHHTHH--HHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred             Eeccchhhhhhcc--cccccccccCCCceEEEeeccCCcccceeeeehhhHHHH
Confidence            9999999999998  999999988889999999999999999999988877654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.2e-32  Score=186.74  Aligned_cols=131  Identities=31%  Similarity=0.505  Sum_probs=121.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||+++++++.+.+.+.++.+..+.+.+..++..+.+.+||++|++.+...+..++++++++++||
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~   83 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY   83 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence            58999999999999999999999999999999998888878888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++++|..+.  .|+..+.+..  .++|++|+|||+|+.+.|+|+.++++.||
T Consensus        84 d~~d~~Sf~~~~--~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~  136 (169)
T d1x1ra1          84 SVTDKASFEHVD--RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA  136 (169)
T ss_dssp             ETTCHHHHHTHH--HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH
T ss_pred             ccccchhhhccc--hhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHH
Confidence            999999999998  8999887663  48999999999999999999988887765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-32  Score=186.31  Aligned_cols=130  Identities=25%  Similarity=0.353  Sum_probs=103.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||+++|.+..+. .+.++.+..+...+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            379999999999999999999987764 3456667777778888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++++|..+.  .|+..+....  .++|++|||||+|+.+.|+|+.++++.||
T Consensus        80 d~t~~~s~~~~~--~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~  132 (168)
T d2gjsa1          80 SVTDKGSFEKAS--ELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA  132 (168)
T ss_dssp             ETTCHHHHHHHH--HHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             cccccccccccc--cccchhhcccccccceEEEeecccchhhhcchhHHHHHHHH
Confidence            999999999998  8999887765  47899999999999999999888776654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-31  Score=185.07  Aligned_cols=121  Identities=58%  Similarity=1.014  Sum_probs=111.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      ..||+|+|++|||||||+++|..+.|...+.+|.+..+......++..+.+.+||++|++.+..++..++++++++|+||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999999999999988877777788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      |++++++|..+.. .|...+....+++|++|||||+|+...+
T Consensus        82 d~~~~~Sf~~~~~-~~~~~~~~~~~~~piilvgnK~Dl~~~~  122 (177)
T d1kmqa_          82 SIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRNDE  122 (177)
T ss_dssp             ETTCHHHHHHHHH-THHHHHHHHSTTSCEEEEEECGGGTTCH
T ss_pred             ccchhHHHHHHHH-HHHHHHHHhCCCCceEEeeecccccchh
Confidence            9999999998875 7788888778899999999999997544

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=6.1e-32  Score=186.60  Aligned_cols=132  Identities=31%  Similarity=0.556  Sum_probs=118.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+|+|++|||||||+++|+.++|...|.+|.+..+...+.+++..+.+.+||++|++.+..++..++++++++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            35799999999999999999999999999999999988888888999999999999999999998999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++++|..+.  .|++.+.+..  +++|++|||||+|+.+.|+|+.++++.|+
T Consensus        83 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~  136 (168)
T d1u8za_          83 FSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA  136 (168)
T ss_dssp             EETTCHHHHHHHH--HHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             eeccchhhhhhHH--HHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHH
Confidence            9999999999998  9999888763  58999999999999999999988876654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.7e-32  Score=186.89  Aligned_cols=131  Identities=28%  Similarity=0.470  Sum_probs=118.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||++|++.+...+..+++.++++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            58999999999999999999999999999999999888777788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhh---CCCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHY---APSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++++|..+.  .|+..+.+.   ..++|++|||||+|+...|+|+.+++++||
T Consensus        82 d~~~~~s~~~~~--~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~  135 (171)
T d2erxa1          82 SITSRQSLEELK--PIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA  135 (171)
T ss_dssp             ETTCHHHHHTTH--HHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             ecccccchhccc--chhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHH
Confidence            999999999998  787766543   358999999999999999999988887765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-31  Score=185.54  Aligned_cols=122  Identities=62%  Similarity=1.132  Sum_probs=112.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+++|++|||||||+++|+.+.|...+.+|.+..+......++..+.+++||++|++.+..++..++++++++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            46899999999999999999999999999999999987777778889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ||++++++|+.+.. .|...+....++.|+++||||+|+.+.+
T Consensus        82 ~d~~~~~Sf~~~~~-~~~~~~~~~~~~~~i~lvgnK~Dl~~~~  123 (191)
T d2ngra_          82 FSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDP  123 (191)
T ss_dssp             EETTCHHHHHHHHH-THHHHHHHHCTTCCEEEEEECGGGGGCH
T ss_pred             cccchHHHHHHHHH-HHHHHHhhcCCCCceEEEeccccccccc
Confidence            99999999999975 7788787777899999999999997554

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=184.22  Aligned_cols=130  Identities=27%  Similarity=0.413  Sum_probs=114.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      .+||+++|++|||||||+++|+.+.|.+.+.||.+..+......++..+.+.+||++|++.+. ....++++++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            589999999999999999999999999999999998888877889999999999999997764 4566888999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHh--hhCCCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELR--HYAPSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~--~~~~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++++|..+.  .|...+.  ...++.|+++||||+|+...|+|+.++++.+|
T Consensus        81 d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a  133 (168)
T d2atva1          81 DITDRGSFEEVL--PLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA  133 (168)
T ss_dssp             ETTCHHHHHTHH--HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             ccCCccchhhhh--hhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHH
Confidence            999999999998  6554443  33468999999999999999999988887765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=183.15  Aligned_cols=133  Identities=33%  Similarity=0.645  Sum_probs=112.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+|+|++|||||||+++|+.+.|...+.++.+..+. .....++..+.+.+||++|++.+..++..++++++++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            4689999999999999999999999999999999886664 466778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      |||++++++|..+.  .|+..+.... ...|++|||||+|+.++|+|+.+++++||-
T Consensus        82 v~d~~~~~Sf~~~~--~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~  136 (167)
T d1z08a1          82 VYDITDEDSFQKVK--NWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE  136 (167)
T ss_dssp             EEETTCHHHHHHHH--HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             EEeCCchhHHHhhh--hhhhhcccccccccceeeeccccccccccccchHHHHHHHH
Confidence            99999999999998  7887766554 688999999999999999999988877653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=182.51  Aligned_cols=132  Identities=30%  Similarity=0.526  Sum_probs=119.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+++|++|||||||+++|+.+++...+.++.++.+.....+++..+.+.+||++|++.+...+..++++++++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            57999999999999999999999999999999999988877788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++.+|..+.  .|...+....  +++|++|||||+|+.+.|.+..++++.++
T Consensus        82 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  135 (167)
T d1kaoa_          82 YSLVNQQSFQDIK--PMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA  135 (167)
T ss_dssp             EETTCHHHHHHHH--HHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             eeecchhhhhhhh--chhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHH
Confidence            9999999999998  8888777654  58999999999999999888877765544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1e-30  Score=182.21  Aligned_cols=119  Identities=39%  Similarity=0.772  Sum_probs=110.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      ..||+++|++|||||||+++|+.++|...+.||.+..+.....+++..+.+++||++|++.+...+..++++++++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999999999988888777788889999999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      |++++++|..+.. .|...+....+++|++|||||+|+..
T Consensus        82 d~~~~~Sf~~~~~-~~~~~~~~~~~~~~iilVgnK~Dl~~  120 (179)
T d1m7ba_          82 DISRPETLDSVLK-KWKGEIQEFCPNTKMLLVGCKSDLRT  120 (179)
T ss_dssp             ETTCHHHHHHHHH-THHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             ecccCCCHHHHHH-HHHHHHhccCCcceEEEEEecccccc
Confidence            9999999999885 67777877788999999999999864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-30  Score=180.04  Aligned_cols=126  Identities=68%  Similarity=1.172  Sum_probs=115.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ++.+||+|+|++|||||||+++|+.+.|...+.+|.++.+...+..++..+.+.+||++|++.+..++..++++++++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            57799999999999999999999999999999999988877778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      |||++++++|+.+.. .|+..+..+..++|++|||||+|+.+.+.+.
T Consensus        83 v~d~~~~~sf~~i~~-~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~  128 (183)
T d1mh1a_          83 CFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDDKDTI  128 (183)
T ss_dssp             EEETTCHHHHHHHHH-THHHHHHHHSTTSCEEEEEECHHHHTCHHHH
T ss_pred             eeccchHHHHHHHHH-HHHHHHHHhCCCCcEEEEeecccchhhhhhh
Confidence            999999999999875 7888888887899999999999998776653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-31  Score=182.36  Aligned_cols=132  Identities=27%  Similarity=0.490  Sum_probs=119.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||++||++|||||||+++|+.++|...+.++.+..+...+..++..+.+.+||++|++.+...+..++++++++|+|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            57899999999999999999999999999999999988887888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++.+|+.+.  .|+..+.+.  .+++|++|||||+|+...+.++.+++..++
T Consensus        82 ~d~~~~~sf~~~~--~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~  135 (167)
T d1c1ya_          82 YSITAQSTFNDLQ--DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA  135 (167)
T ss_dssp             EETTCHHHHHTHH--HHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             eeccchhhhHhHH--HHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHH
Confidence            9999999999999  888887764  358999999999999998888876655443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.7e-31  Score=181.03  Aligned_cols=132  Identities=33%  Similarity=0.564  Sum_probs=116.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+|+|++|||||||+++|+.+.+...+.+|.++.+...+.+++..+.+++||++|.+.+...+..+++.++++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            45899999999999999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++.+|..+.  .|+..+.+..  ...|++|||||+|+.+.|.++.++++.||
T Consensus        84 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~  137 (171)
T d2erya1          84 FSVTDRGSFEEIY--KFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLA  137 (171)
T ss_dssp             EETTCHHHHHTHH--HHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHH
T ss_pred             eccccccchhhHH--HHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHH
Confidence            9999999999998  8888776553  57999999999999999999988877665

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=179.50  Aligned_cols=133  Identities=32%  Similarity=0.617  Sum_probs=118.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+++|++|||||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+..++..+++++++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            3468999999999999999999999999888888776655 557788899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++.+|..+.  .|...+.+.. ..+|++|||||+|+.+.++++.++++.|+
T Consensus        83 ~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~  137 (171)
T d2ew1a1          83 LTYDITCEESFRCLP--EWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFS  137 (171)
T ss_dssp             EEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred             Eeeecccchhhhhhh--hhhhhhcccccccccEEEEEeecccccccchhhhHHHHHH
Confidence            999999999999998  7777776654 57999999999999999999888776654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=180.56  Aligned_cols=123  Identities=31%  Similarity=0.515  Sum_probs=106.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      -.+||+++|++|||||||+++|+.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            368999999999999999999999999999999987665 4566678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      |||++++++|+.+.  .|+..+.+..+++|++|||||+|+...+..
T Consensus        82 v~d~~~~~Sf~~~~--~~~~~~~~~~~~~piilvgnK~Dl~~~~~~  125 (170)
T d1i2ma_          82 MFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDIKDRKVK  125 (170)
T ss_dssp             EEETTSGGGGTTHH--HHHHHHHHHHCSCCEEEEEECCCCSCSCCT
T ss_pred             ccccccccccchhH--HHHHHHhhccCCCceeeecchhhhhhhhhh
Confidence            99999999999998  899999888889999999999999776543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-30  Score=177.82  Aligned_cols=133  Identities=26%  Similarity=0.537  Sum_probs=118.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      .+.+||+++|++|||||||++||..++|...+.+|.+..+. .....++....+.+||++|++.+..++..+++.++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            46899999999999999999999999999999998877664 45566788888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++++|..+.  .|...+.... ++.|++|||||+|+.+.|.++.++++.||
T Consensus        82 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~  136 (167)
T d1z0ja1          82 IVYDITKEETFSTLK--NWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYA  136 (167)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EEeeechhhhhhhHH--HhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHH
Confidence            999999999999998  7777766655 68999999999999999999988777655

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.6e-30  Score=178.34  Aligned_cols=132  Identities=28%  Similarity=0.595  Sum_probs=116.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+++|++|||||||+++|..+++...+.++.+... ...+...+..+.+++||++|++.+..++..++++++++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888888877554 4566778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |||+++++++..+.  .|...+.... ...|+++|+||+|+.+.+.++.++++.+|
T Consensus        84 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~  137 (169)
T d3raba_          84 MYDITNEESFNAVQ--DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLA  137 (169)
T ss_dssp             EEETTCHHHHHTHH--HHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EEECccchhhhhhh--hhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHH
Confidence            99999999999988  7776666554 68999999999999999999888776654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=178.72  Aligned_cols=130  Identities=31%  Similarity=0.548  Sum_probs=115.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF  101 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  101 (159)
                      +||+|+|++|||||||+++|+++++...+.++.+..+ ......++..+.+.+||++|++.+...+..++.+++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999999988888887655 446666788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          102 SLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       102 d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |++++.+|..+.  .|+..+.... +++|++|||||+|+.+.++++.++++.++
T Consensus        81 d~~~~~s~~~i~--~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~  132 (164)
T d1yzqa1          81 DITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA  132 (164)
T ss_dssp             ETTCHHHHHTHH--HHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             ccccccchhhhH--hhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHH
Confidence            999999999998  7777776554 68999999999999999999887776655

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.2e-30  Score=176.30  Aligned_cols=132  Identities=30%  Similarity=0.616  Sum_probs=116.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+|+|++|||||||+++|+++++...+.++....+ .....+++..+.+.+||++|++.+..++..++++++++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            468999999999999999999999999988888776665 4566788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |||++++++|..+.  .|+..+.... +..|++++|||+|+...+.++.++++.+|
T Consensus        83 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~  136 (166)
T d1z0fa1          83 VYDITRRSTYNHLS--SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFA  136 (166)
T ss_dssp             EEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EeccCchHHHHHHH--HHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHH
Confidence            99999999999988  7777777655 58999999999999998888887776654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8e-30  Score=175.98  Aligned_cols=132  Identities=33%  Similarity=0.587  Sum_probs=117.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      -.+||+++|++|||||||+++|+.+++...+.++.+..+. ......+..+.+.+||++|++.+..++..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            4689999999999999999999999999998888887764 455677888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |||++++++|..+.  .|...+.+.. +++|++|||||+|+.++|+|+.++++.++
T Consensus        85 v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~  138 (170)
T d1r2qa_          85 VYDITNEESFARAK--NWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA  138 (170)
T ss_dssp             EEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             EeccchhhHHHHHH--HHhhhhhhccCCCceEEeecccccccccccccHHHHHHHH
Confidence            99999999999998  7777766544 68999999999999999999988777665

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-29  Score=177.40  Aligned_cols=133  Identities=32%  Similarity=0.679  Sum_probs=117.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ....+||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..++++++++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            356799999999999999999999999999999999887764 5778899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCcccccCccccccCCCcc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |+|||++++++|..+.  .|...+.+. ..++|++||+||+|+.+.+.+..++...+
T Consensus        83 i~v~d~t~~~s~~~~~--~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~  137 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVK--MWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF  137 (194)
T ss_dssp             EEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEEeCcchhhhhhHh--hhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhh
Confidence            9999999999999998  666666554 46899999999999999888887765443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=175.20  Aligned_cols=128  Identities=38%  Similarity=0.639  Sum_probs=110.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+... ...+..++..+.+.+||++|++.|...+..+++.++++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            468999999999999999999999999888777776554 4566788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYP  150 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~  150 (159)
                      |||++++++|..+.  .|+..+..+. +++|++|||||+|+.+.+.+..+..
T Consensus        83 v~d~~~~~S~~~~~--~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~  132 (175)
T d2f9la1          83 VYDIAKHLTYENVE--RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEA  132 (175)
T ss_dssp             EEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEECCCcccchhHH--HHHHHHHHhcCCCCcEEEEEeeecccccccchHHHH
Confidence            99999999999999  8888888776 5799999999999988777665543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=174.38  Aligned_cols=133  Identities=30%  Similarity=0.571  Sum_probs=117.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeE-EEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFS-ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+|+|++|||||||+++|..+++...+.++.+..+. ..+..++..+.+.+||++|++.+..++..++..++++|
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            34689999999999999999999999999888888877764 46667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||.+++++|..+.  .|+..+.... +++|+++|+||+|+...++++.++++.+|
T Consensus        83 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~  137 (174)
T d2bmea1          83 LVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFA  137 (174)
T ss_dssp             EEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             EEEecccchhHHHHh--hhhcccccccCCceEEEEEEecccccchhchhhhHHHHHH
Confidence            999999999999998  7877777665 68999999999999988888877665554

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.8e-29  Score=173.19  Aligned_cols=132  Identities=29%  Similarity=0.603  Sum_probs=115.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccc-cccccccCCcEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNR-LRPLSYRGADVFI   98 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i   98 (159)
                      +.+||+++|++|||||||+++|+.+++...+.++.+..+ .....+......+.+||++|...... .+..++.+++++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999988888887666 45667788889999999999876654 5677899999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++++|+.+.  .|+..+.++.  +++|++|||||+|+.+.++|+.++++.|+
T Consensus        81 lv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~  136 (165)
T d1z06a1          81 FVYDMTNMASFHSLP--AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA  136 (165)
T ss_dssp             EEEETTCHHHHHTHH--HHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EEEEeehhhhhhhhh--hhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHH
Confidence            999999999999998  8998887764  58999999999999999999988877664

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-29  Score=173.94  Aligned_cols=132  Identities=30%  Similarity=0.597  Sum_probs=112.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ..+||+|+|++|||||||+++++++++...+.++..... .......+..+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            458999999999999999999999999888877775555 4455667888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      |||++++++|..+.  .|+..+.+.. +++|++|||||+|+...+.+..+++..||
T Consensus        82 v~d~~~~~sf~~~~--~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a  135 (173)
T d2a5ja1          82 VYDITRRETFNHLT--SWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFA  135 (173)
T ss_dssp             EEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EEeecChHHHHhHH--HHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHH
Confidence            99999999999998  7887777765 68999999999999999998888777665

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.5e-29  Score=175.17  Aligned_cols=133  Identities=28%  Similarity=0.602  Sum_probs=91.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..+++.++++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            4678999999999999999999999999888888887665 557788998999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++.+|..+.  .|...+.... .+.|+++|+||+|+...+.+..+++.+++
T Consensus        84 ~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~  138 (173)
T d2fu5c1          84 LVYDITNEKSFDNIR--NWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA  138 (173)
T ss_dssp             EEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred             EEEECCChhhHHHHH--HHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHH
Confidence            999999999999998  7777776554 68999999999999988888776655543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=172.83  Aligned_cols=131  Identities=34%  Similarity=0.551  Sum_probs=117.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+|+|++|||||||+++|+++.+...+.++.+..+......++..+.+.+||++|++.+...+..++..++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            46899999999999999999999999999999999988877778888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||++++.+|..+.  .|+..+.+..  +++|+++||||+|+. .+.++.++++.|+
T Consensus        82 ~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~  134 (166)
T d1ctqa_          82 FAINNTKSFEDIH--QYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLA  134 (166)
T ss_dssp             EETTCHHHHHTHH--HHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHH
T ss_pred             ecccccccHHHHH--HHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHH
Confidence            9999999999998  9999888764  579999999999985 5666666665554

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-28  Score=169.76  Aligned_cols=131  Identities=31%  Similarity=0.578  Sum_probs=114.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|++|||||||+++|+.++|...+.+|.+..+ .+.+..++..+.+.+||++|++.+...+..++.+++++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999999999988776 45777889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCccccc---CccccccCCCccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRK---DRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~---~r~v~~~~~~~~~  154 (159)
                      ||++++.+|..+.  .|...+.... ...|+++++||+|+.+   .|.|+.++++.||
T Consensus        83 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~  138 (170)
T d1ek0a_          83 YDVTKPQSFIKAR--HWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLA  138 (170)
T ss_dssp             EETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH
T ss_pred             EeCCcccchhhhh--hhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHH
Confidence            9999999999998  7776655544 6799999999999865   4777777766554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-29  Score=176.28  Aligned_cols=133  Identities=35%  Similarity=0.575  Sum_probs=114.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECC----------eEEEEEEEeCCCccccccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDG----------RTVNLGLWDTAGQEDYNRLRP   88 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~----------~~~~~~i~D~~g~~~~~~~~~   88 (159)
                      ...+||+|+|++|||||||+++|+++++...+.++.+..+ ...+.+++          ..+.+.+||++|++.+..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            3568999999999999999999999999888888877665 33444332          347799999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           89 LSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      .++++++++|+|||++++.+|..+.  .|+..+..+.  ..+|++|||||+|+.+.|+|+.+++++||
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~  148 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA  148 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             HHHhcCCEEEEEEeccccccceeee--eccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHH
Confidence            9999999999999999999999998  8988777654  57899999999999999999988877665

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-28  Score=168.05  Aligned_cols=134  Identities=37%  Similarity=0.660  Sum_probs=112.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      +...+||+|+|++|||||||+++|+.+++...+.+|.+..+ ......++..+.+.+||++|+......+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            35678999999999999999999999999999888887766 44666788889999999999998888999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCccccccCCCcccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQFHLDYPGAYTI  155 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~v~~~~~~~~~~  155 (159)
                      +++||.+++.+|..+.  .|++.+.+..     +++|++|||||+|+. +|+++.++++.|+-
T Consensus        83 i~~~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~  142 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCR  142 (174)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHH
T ss_pred             EEEEeeecccccchhh--hHHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHH
Confidence            9999999999999988  8988876542     478999999999995 47788777766653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-28  Score=169.46  Aligned_cols=129  Identities=26%  Similarity=0.423  Sum_probs=105.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccc-eeeeeEEEEEECCeEEEEEEEeCCC---cccccccccccccCCcE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPT-VFDNFSANVMVDGRTVNLGLWDTAG---QEDYNRLRPLSYRGADV   96 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~~~   96 (159)
                      .+||+++|++|||||||+++|.+..+... +.++ ..+.+...+.+++..+.+.+||+++   ++.+  ++..+++++++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            58999999999999999999998775432 2333 3455567788899999999999864   4444  55678999999


Q ss_pred             EEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           97 FILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|+|||++++++|..+.  .|...+....  +++|++|||||+|+.++|+|+.++++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~--~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a  138 (172)
T d2g3ya1          81 YLIVYSITDRASFEKAS--ELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA  138 (172)
T ss_dssp             EEEEEETTCHHHHHHHH--HHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             eeeeecccccchhhhhh--hhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHH
Confidence            99999999999999998  8888777543  58999999999999999999988887765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.8e-28  Score=165.60  Aligned_cols=133  Identities=32%  Similarity=0.602  Sum_probs=105.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-ccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDY-VPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ...+||+++|+++||||||+++|+++++...+ .++.+..+ ...+..++..+.+++||++|++.+..++..++++++++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            45789999999999999999999999986554 44445444 44677889899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ++|||++++++|..+.  .|...+.... ...|+++|+||+|+.+.+.++.+++..++
T Consensus        84 i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~  139 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQ--AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLA  139 (170)
T ss_dssp             EEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHH
T ss_pred             EEEecCCcccchhhhh--hhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHH
Confidence            9999999999999998  6666555544 68899999999999999999887766554

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.8e-28  Score=168.61  Aligned_cols=131  Identities=28%  Similarity=0.559  Sum_probs=97.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEE--ECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVM--VDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+||+++|++|||||||+++|+++++...+.++.+........  .+.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4799999999999999999999999998888887666544332  23456779999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCcc-ccccCCCccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQ-FHLDYPGAYT  154 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~-v~~~~~~~~~  154 (159)
                      |||++++.+|..+.  .|+..+..+.     +++|++|||||+|+.+.+. ++.+++++|+
T Consensus        82 v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~  140 (175)
T d1ky3a_          82 VYDVTNASSFENIK--SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELA  140 (175)
T ss_dssp             EEETTCHHHHHTHH--HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHH
T ss_pred             Eeecccccccchhh--hcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHH
Confidence            99999999999988  8998886542     4789999999999987654 5555555443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.1e-27  Score=165.68  Aligned_cols=125  Identities=35%  Similarity=0.663  Sum_probs=108.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+|+|.+|||||||+++|+++++...+.+|.+..+ .......+..+.+.+||++|+..+...+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            47999999999999999999999999999999987666 44666778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-----CCCCEEEEeeCcccccCccccccC
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-----PSVPIVLVGTKLDLRKDRQFHLDY  149 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~r~v~~~~  149 (159)
                      ||.+++.+|..+.  .|++.+..+.     .++|++|||||+|+.+ +++..++
T Consensus        82 ~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~  132 (184)
T d1vg8a_          82 FDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKR  132 (184)
T ss_dssp             EETTCHHHHHTHH--HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHH
T ss_pred             ecccchhhhhcch--hhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHH
Confidence            9999999999998  9998887653     3689999999999965 4444443

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.3e-27  Score=162.79  Aligned_cols=129  Identities=31%  Similarity=0.619  Sum_probs=104.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      .+||+++|++|||||||+++|+.+++...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999988777 45777888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCccccccCCCcc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      ||.+++++|..+.  .|...+.... ...|++++++|.|+. .+.+..++++.+
T Consensus        82 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~  132 (166)
T d1g16a_          82 YDITDERTFTNIK--QWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEAL  132 (166)
T ss_dssp             EETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHH
T ss_pred             EECCCccCHHHHH--hhhhhhhccccCcceeeeecchhhhh-hhhhhHHHHHHH
Confidence            9999999999988  6666665555 578899999999985 444555554443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.5e-27  Score=161.64  Aligned_cols=132  Identities=31%  Similarity=0.614  Sum_probs=113.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      ...+||+|+|++|||||||+++|.++++...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+++++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4568999999999999999999999999888888776655 446678899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCccccccCCCccc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      +|||++++.+|..+.  .|+..+.+..  ...|+++++||.|.. .+.++.++++.++
T Consensus        85 ~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~  139 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLD--NWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFA  139 (177)
T ss_dssp             EEEETTCHHHHHTHH--HHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHH
T ss_pred             EEEECCCccccccch--hhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHH
Confidence            999999999999998  8998887765  468999999999974 4666665555443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.94  E-value=7.4e-27  Score=160.05  Aligned_cols=117  Identities=21%  Similarity=0.330  Sum_probs=100.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+++|++|||||||+++|..+++...+.||.+..+. .+..++  +.+.+||++|++.+...+..++..++++++|
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            3689999999999999999999999999888888876554 334444  6799999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhh--CCCCCEEEEeeCcccccC
Q 044772          101 FSLISRPSYENISKKKWVPELRHY--APSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  142 (159)
                      ||++++++|..+.  .|+..+...  .+++|++||+||+|+.+.
T Consensus        78 ~d~~~~~~~~~~~--~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          78 VDAADQEKIEASK--NELHNLLDKPQLQGIPVLVLGNKRDLPGA  119 (164)
T ss_dssp             EETTCGGGHHHHH--HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             cccccccccchhh--hhhhhhhhhhcccCCcEEEEEeccccchh
Confidence            9999999999888  666655443  268999999999999753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=161.30  Aligned_cols=125  Identities=22%  Similarity=0.286  Sum_probs=104.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      ..+||+++|++|||||||+++++++.+.. +.++.+..+...+.+++..+.+.+||++|+..+     .+++.+|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            36999999999999999999999999854 466777777778889999999999999998654     367889999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhhC----CCCCEEEEeeCcccc--cCccccccCCCcc
Q 044772          101 FSLISRPSYENISKKKWVPELRHYA----PSVPIVLVGTKLDLR--KDRQFHLDYPGAY  153 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~--~~r~v~~~~~~~~  153 (159)
                      ||++++++|+.+.  .|+..+....    +++|+++|+||.|+.  ..|.|+.++++.|
T Consensus        78 fd~~~~~Sf~~~~--~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~  134 (175)
T d2bmja1          78 FSLEDENSFQAVS--RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL  134 (175)
T ss_dssp             EETTCHHHHHHHH--HHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHH
T ss_pred             eecccchhhhhhH--HHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHH
Confidence            9999999999998  8888776543    478999999988874  4566766665544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.93  E-value=1.7e-25  Score=153.02  Aligned_cols=121  Identities=17%  Similarity=0.286  Sum_probs=96.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+++|++|||||||+++|.++.+. .+.+|.+.... .+..++  +.+.+||++|++.+...+..++..++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK-TLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEE-EEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeee-eccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            4689999999999999999999887763 45666654332 333343  6799999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCcccccCcccc
Q 044772          101 FSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus       101 ~d~~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ||+++..++..... .|...+... ..+.|++||+||+|+.+.+.+.
T Consensus        77 ~d~~d~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  122 (165)
T d1ksha_          77 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALSCN  122 (165)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH
T ss_pred             eecccchhHHHHHH-hhhhhhhhcccCCCceEEEEeccccccccCHH
Confidence            99999999988874 555555433 2689999999999998655544

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.91  E-value=8.4e-25  Score=150.95  Aligned_cols=119  Identities=22%  Similarity=0.332  Sum_probs=94.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   98 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   98 (159)
                      +.+.+||+++|++|||||||+++|.++++... .++.+.. ...+...+  +.+.+||++|++.+...+..++..+++++
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~-~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   88 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeee-EEEeccCC--eeEeEeeccccccchhHHHHHhhccceeE
Confidence            35679999999999999999999998887432 2222221 22333333  67999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccCc
Q 044772           99 LAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        99 ~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~r  143 (159)
                      +|||++++.+|..+.  .|+..+....  .++|++||+||+|+.+..
T Consensus        89 ~v~d~~d~~s~~~~~--~~~~~~~~~~~~~~~pillv~nK~Dl~~~~  133 (176)
T d1fzqa_          89 YVIDSADRKRFEETG--QELTELLEEEKLSCVPVLIFANKQDLLTAA  133 (176)
T ss_dssp             EEEETTCGGGHHHHH--HHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             Eeeccccccchhhhh--hhhhhhhhhhccCCCeEEEEEEeccccccc
Confidence            999999999999987  5555554433  579999999999997544

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=8e-25  Score=152.07  Aligned_cols=126  Identities=16%  Similarity=0.202  Sum_probs=93.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEE
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVF   97 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   97 (159)
                      ...+.+||+++|++|||||||+++|..+.+.. ..+|.+.... ....++  +.+.+||++|++.+...+..++..++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVE-TLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEE-EEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEE-EEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            34568999999999999999999998776643 3344443322 223333  6789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC---ccccccC
Q 044772           98 ILAFSLISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD---RQFHLDY  149 (159)
Q Consensus        98 i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~---r~v~~~~  149 (159)
                      ++|||++++.++....  .|+..+....  .+.|++||+||+|+.+.   +++..+.
T Consensus        89 i~v~d~~d~~s~~~~~--~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~  143 (182)
T d1moza_          89 IFVVDSTDKDRMSTAS--KELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL  143 (182)
T ss_dssp             EEEEETTCTTTHHHHH--HHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEEeeecccccchhHH--HHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHH
Confidence            9999999999999887  6665544332  57999999999999653   4444443

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=146.50  Aligned_cols=116  Identities=22%  Similarity=0.307  Sum_probs=91.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+++|++|||||||+++|..+.+... .+|.+..+ ..  .....+.+.+||++|++.+...+..++++++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~-~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV-ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE-EE--EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE-EE--eeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            4579999999999999999999998776432 23333222 12  22334679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhh-h-CCCCCEEEEeeCccccc
Q 044772          100 AFSLISRPSYENISKKKWVPELRH-Y-APSVPIVLVGTKLDLRK  141 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~-~-~~~~piilv~nK~Dl~~  141 (159)
                      |||+++.+++..+.  .|+..+.. . ..+.|++||+||+|+.+
T Consensus        86 v~D~s~~~~~~~~~--~~l~~~~~~~~~~~~piiiv~NK~Dl~~  127 (173)
T d1e0sa_          86 VVDCADRDRIDEAR--QELHRIINDREMRDAIILIFANKQDLPD  127 (173)
T ss_dssp             EEETTCGGGHHHHH--HHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred             EEecccchhHHHHH--HHHHHHhhhcccccceeeeeeecccccc
Confidence            99999999999988  55554433 2 25899999999999975

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.3e-23  Score=145.19  Aligned_cols=126  Identities=13%  Similarity=0.141  Sum_probs=95.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||++||+.|||||||++||..+.+...+.        ....++...+.+++||++|++.+...+..|++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~--------~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGI--------VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSE--------EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccE--------EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            46899999999999999999998777653322        1223333446799999999999999999999999999999


Q ss_pred             EeCCChhhHHhhhh---------hhHHHHHhhh-CCCCCEEEEeeCcccccCccccccCCCccc
Q 044772          101 FSLISRPSYENISK---------KKWVPELRHY-APSVPIVLVGTKLDLRKDRQFHLDYPGAYT  154 (159)
Q Consensus       101 ~d~~~~~s~~~~~~---------~~~~~~i~~~-~~~~piilv~nK~Dl~~~r~v~~~~~~~~~  154 (159)
                      ||+++..+|.....         ..|...+... ....|+++++||+|+...+....+....|+
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~  136 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYP  136 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCT
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhh
Confidence            99999888754331         1344444433 257899999999999877766655554444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1e-22  Score=142.39  Aligned_cols=121  Identities=16%  Similarity=0.100  Sum_probs=97.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+++|+.|||||||++||..+.+  .+.||.+..+.   .+....+.+++||++|++.+...+..++..+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            468999999999999999999998887  46788875443   3344456799999999999999999999999999999


Q ss_pred             EeCCChhhH-----------HhhhhhhHHHHHhhhC-CCCCEEEEeeCcccccCcccccc
Q 044772          101 FSLISRPSY-----------ENISKKKWVPELRHYA-PSVPIVLVGTKLDLRKDRQFHLD  148 (159)
Q Consensus       101 ~d~~~~~s~-----------~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~r~v~~~  148 (159)
                      ||.++...+           +...  .|...+.... .+.|+++++||+|+.+.+.+...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~  133 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKA--LFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSH  133 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHH--HHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSC
T ss_pred             eeccchhhhhhhhccccchHHHHH--HHHHHHhhhhccCccEEEecchhhhhhhcccchH
Confidence            999876542           2333  6777765543 68999999999999876665543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=8.8e-23  Score=143.05  Aligned_cols=127  Identities=14%  Similarity=0.135  Sum_probs=87.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA  100 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  100 (159)
                      +.+||+++|++|||||||++||.   +...+.||.+.... .+.+.  .+.+++||++|++.+...+..+++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~-~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY-DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE-EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE-EEeee--eeeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999993   55667788874332 33344  46699999999999999999999999999999


Q ss_pred             EeCCChhhHHhh-------hh-hhHHHHHhhh--CCCCCEEEEeeCcccccCccccccCCCcc
Q 044772          101 FSLISRPSYENI-------SK-KKWVPELRHY--APSVPIVLVGTKLDLRKDRQFHLDYPGAY  153 (159)
Q Consensus       101 ~d~~~~~s~~~~-------~~-~~~~~~i~~~--~~~~piilv~nK~Dl~~~r~v~~~~~~~~  153 (159)
                      |+.++...+...       .. ..|+..+...  ..++|++|++||+|+.+.+....+..+.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f  137 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYF  137 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTC
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhC
Confidence            999987654221       10 0333333322  25899999999999987665555444433

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.86  E-value=4.9e-22  Score=134.19  Aligned_cols=124  Identities=15%  Similarity=0.201  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS  102 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  102 (159)
                      +||+++|++|||||||+++|.++++...+......    ....+...+.+.+||++|...+...+..++..+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            58999999999999999999998886554433222    22334556789999999999998899999999999999999


Q ss_pred             CCChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCccccc---CccccccCCCc
Q 044772          103 LISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRK---DRQFHLDYPGA  152 (159)
Q Consensus       103 ~~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~---~r~v~~~~~~~  152 (159)
                      +.++.++..+.  .|+..+....  ..+|+++++||+|+.+   .+++..+.+..
T Consensus        77 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~  129 (160)
T d1r8sa_          77 SNDRERVNEAR--EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH  129 (160)
T ss_dssp             TTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred             ecChHHHHHHH--HHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHH
Confidence            99999999887  5555444322  5789999999999874   34444444433

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.5e-21  Score=137.88  Aligned_cols=119  Identities=15%  Similarity=0.149  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-ccccccccCCcEEEEEEe
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN-RLRPLSYRGADVFILAFS  102 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~v~d  102 (159)
                      +|+++|++|||||||+++|+++++...+ ++.+..+......+...+.+.+||++|++.+. ..+..++..++++++|||
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            7999999999999999999998876553 45444433222224556789999999998875 466788899999999999


Q ss_pred             CCChhhHH-hhhhhhHHHHHh---hhCCCCCEEEEeeCcccccCcc
Q 044772          103 LISRPSYE-NISKKKWVPELR---HYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus       103 ~~~~~s~~-~~~~~~~~~~i~---~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      +++..++. .... .|...+.   ....++|++||+||+|++..+.
T Consensus        81 ~~d~~~~~~~~~~-~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          81 SAAFQREVKDVAE-FLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             TTTHHHHHHHHHH-HHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             cccccccHHHHHH-HHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            99877653 3331 2223222   2235789999999999976443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=4.1e-21  Score=137.31  Aligned_cols=119  Identities=17%  Similarity=0.149  Sum_probs=89.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ...+||+++|++|||||||++++..+.+    .||.+... ..+.+++  +.+++||++|++.+...|..++.+++++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~-~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE-TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE-EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE-EEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            3568999999999999999999986654    35666332 2344454  679999999999999999999999999999


Q ss_pred             EEeCCChhhHH----------hhhhhhHHHHHhhh-CCCCCEEEEeeCcccccCcccc
Q 044772          100 AFSLISRPSYE----------NISKKKWVPELRHY-APSVPIVLVGTKLDLRKDRQFH  146 (159)
Q Consensus       100 v~d~~~~~s~~----------~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~r~v~  146 (159)
                      ++|.++...+.          +... .|...+... ..++|++|++||+|+.+.+..+
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~-~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~  133 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLNKQDLLAEKVLA  133 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEECHHHHHHHHHH
T ss_pred             EEEccccccccccccchHHHHHHHH-HHHHHhcChhhCCCcEEEEechhhhhhhhhcc
Confidence            99998654432          2221 233323222 2589999999999998877654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=8.9e-20  Score=125.84  Aligned_cols=118  Identities=21%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLR--------PLSY   91 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~   91 (159)
                      .-+|+|+|.+|||||||+++|++.+..  .....+............+  ..+.+||++|........        ..++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            347999999999999999999987643  2222233322233334444  358999999975443322        3347


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      .++|++++|+|++++....  .. .|+..++....+.|+++|+||+|+.+...
T Consensus        83 ~~ad~il~v~D~~~~~~~~--~~-~i~~~l~~~~~~~piilv~NK~Dl~~~~~  132 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPE--DE-LVARALKPLVGKVPILLVGNKLDAAKYPE  132 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HH-HHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred             ccccceeeeechhhhhccc--cc-chhhheeccccchhhhhhhcccccccCHH
Confidence            8899999999998754433  22 66677776667899999999999976443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=124.21  Aligned_cols=119  Identities=17%  Similarity=0.263  Sum_probs=86.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+.+||+|+|.+|||||||+++|.++++... .++.+.. .......+  +.+.+||+++.+.....+..++..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-cccccee-EEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            4568999999999999999999999887533 2222221 22233333  569999999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++|.++..++.......+...........|++||+||+|++..
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  131 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  131 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc
Confidence            9999999999877631222222222368999999999998654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=5e-19  Score=119.20  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=90.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      ||+++|++|||||||+++|.++++. .+.|+.+....   ......+...+||+.+...+...+..++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE---EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE---EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            7999999999999999999998875 34555543332   2232334588999999999999999999999999999999


Q ss_pred             CChhhHHhhhhhhHHHHHhhhC--CCCCEEEEeeCcccccC
Q 044772          104 ISRPSYENISKKKWVPELRHYA--PSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       104 ~~~~s~~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~  142 (159)
                      +++..+....  .|+..+....  .+.|+++++||.|+...
T Consensus        78 ~~~~~~~~~~--~~~~~~~~~~~~~~~~i~i~~~k~d~~~~  116 (166)
T d2qtvb1          78 ADPERFDEAR--VELDALFNIAELKDVPFVILGNKIDAPNA  116 (166)
T ss_dssp             TCGGGHHHHH--HHHHHHHTCTTTTTCCEEEEEECTTSSSC
T ss_pred             cchhhhhhhh--HHHHhhhhhhccCCceEEEEecccccccc
Confidence            9999988877  5555444433  58999999999998754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.9e-20  Score=124.44  Aligned_cols=119  Identities=22%  Similarity=0.287  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL--------RPLSYR   92 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   92 (159)
                      +||+++|++|||||||+++|++.+..  .....+........+...+  ..+.+||++|.......        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999977643  2222232232333444555  45889999996443321        234567


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      .++.+++++|..+..++....  .|...+.....+.|+++|+||+|+......
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~  130 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAE--IWPEFIARLPAKLPITVVRNKADITGETLG  130 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHH--HCHHHHHHSCTTCCEEEEEECHHHHCCCCE
T ss_pred             hccccceeeccccccchhhhh--hhhhhhhhcccccceeeccchhhhhhhHHH
Confidence            899999999999888777666  666666666678999999999999765433

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.79  E-value=8.2e-19  Score=118.82  Aligned_cols=119  Identities=18%  Similarity=0.244  Sum_probs=91.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      ++.+||++||++|||||||+++|.++++... .++.+.... ....++  +.+.+||.++.+.+...+..++...+++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVE-TVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE-EEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceeee-eeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            3568999999999999999999999988653 333332221 222333  568899999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHhhh-CCCCCEEEEeeCcccccCc
Q 044772          100 AFSLISRPSYENISKKKWVPELRHY-APSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~r  143 (159)
                      ++|+.+..++..... .+...+... ....|+++++||.|+....
T Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~  122 (169)
T d1upta_          79 VVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAM  122 (169)
T ss_dssp             EEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             hhhhhhcchhhhccc-hhhhhhhhhccccceEEEEEeeccccccc
Confidence            999998888887774 344433332 3578999999999997644

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.74  E-value=1.5e-17  Score=114.16  Aligned_cols=118  Identities=18%  Similarity=0.241  Sum_probs=84.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   99 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   99 (159)
                      .+..||++||++|||||||+++|.++.+... .++.+.... .+..++  ..+.+||+.++..+...+..++...+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE-ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccccee-EEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            5678999999999999999999998887543 344333322 334455  357899999999999999999999999999


Q ss_pred             EEeCCChhhHHhhhhhhHHHHHh-hhCCCCCEEEEeeCcccccC
Q 044772          100 AFSLISRPSYENISKKKWVPELR-HYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       100 v~d~~~~~s~~~~~~~~~~~~i~-~~~~~~piilv~nK~Dl~~~  142 (159)
                      ++|..++..+..... .+..... ....+.|+++++||.|++..
T Consensus        87 ~~d~~d~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~K~D~~~~  129 (186)
T d1f6ba_          87 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA  129 (186)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred             eeeccCccchHHHHH-HHHHhhcccccCCCceEEEEeccCcccc
Confidence            999999988887764 3333333 33368999999999998653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=3.7e-18  Score=117.72  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=72.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC--cccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----c---ccccccCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTD--YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR----L---RPLSYRGA   94 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~~   94 (159)
                      +|+++|.+|||||||+|+|++......  ...+....+.  .........+.+||++|......    .   ....+..+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE--EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec--eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            589999999999999999987654322  1222222222  22233334588999999532211    1   12345789


Q ss_pred             cEEEEEEeCCChhhHHhhhh-hhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           95 DVFILAFSLISRPSYENISK-KKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        95 ~~~i~v~d~~~~~s~~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      +.+++++|..... +..... ..|+........+.|+++|+||+|+.+.+.+
T Consensus        81 ~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~  131 (180)
T d1udxa2          81 RVLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAV  131 (180)
T ss_dssp             SEEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHH
T ss_pred             hhhhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHH
Confidence            9999999986532 233320 1333333322246899999999999765443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=6.2e-18  Score=118.70  Aligned_cols=115  Identities=14%  Similarity=0.073  Sum_probs=77.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccccccc----ccCCcEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLS----YRGADVF   97 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~~~~   97 (159)
                      ..+|+++|++|||||||+|+|+++++...   +.......  .+......+.+||++|++.+...+..+    ...++.+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLS--AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEE--ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEE--EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            45899999999999999999999876532   11111122  223333458899999998776655444    3456788


Q ss_pred             EEEEeCCC-hhhHHhhhhhhHHH----HHhhhC-CCCCEEEEeeCcccccCc
Q 044772           98 ILAFSLIS-RPSYENISKKKWVP----ELRHYA-PSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        98 i~v~d~~~-~~s~~~~~~~~~~~----~i~~~~-~~~piilv~nK~Dl~~~r  143 (159)
                      ++++|..+ ..++....  .|+.    .+.... .++|+++|+||+|+...+
T Consensus        78 i~~vd~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTA--EFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEETTSCTTCCHHHH--HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ceEEEEecccccHHHHH--HHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            88888664 55555554  4433    233333 589999999999997644

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=3.5e-17  Score=111.86  Aligned_cols=111  Identities=22%  Similarity=0.167  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------cccccccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN---------RLRPLSYR   92 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~   92 (159)
                      .|+++|++|||||||+++|++....  .....+........+...+  ..+.+||++|.....         .....++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999999976642  2222222222222223333  568999999843221         12233467


Q ss_pred             CCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           93 GADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        93 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      .+|+++++.+..+.......   .|+..+...  ++|+++|+||+|+.+
T Consensus        80 ~ad~i~~~~~~~~~~~~~~~---~~~~~l~~~--~~pviiv~NK~Dl~~  123 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKEDE---SLADFLRKS--TVDTILVANKAENLR  123 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHHH---HHHHHHHHH--TCCEEEEEESCCSHH
T ss_pred             cCcEEEEeeccccccccccc---ccccccccc--cccccccchhhhhhh
Confidence            89999999998765444322   555555543  579999999999864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.67  E-value=1.5e-16  Score=113.74  Aligned_cols=116  Identities=20%  Similarity=0.183  Sum_probs=76.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccceee--eeEE---------------EEEECCeEEEEEEEeCCCcccccccc
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFD--NFSA---------------NVMVDGRTVNLGLWDTAGQEDYNRLR   87 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~---------------~~~~~~~~~~~~i~D~~g~~~~~~~~   87 (159)
                      |+|+|++++|||||+++|++........+....  ....               ...+......+.++|+||++.|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            999999999999999999865422111100000  0000               00112223458899999999998888


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCccc
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~v  145 (159)
                      ...+..+|++|+|+|+.+.-.....   ..+..+..  .++|++|+.||+|+......
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~---~~~~~~~~--~~~p~iivlNK~D~~~~~~~  140 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQ---EALNILRM--YRTPFVVAANKIDRIHGWRV  140 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHH---HHHHHHHH--TTCCEEEEEECGGGSTTCCC
T ss_pred             hhcccccceEEEEEecccCcccchh---HHHHHhhc--CCCeEEEEEECccCCCchhh
Confidence            8889999999999999854333222   33333333  36899999999999765543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=3e-16  Score=108.26  Aligned_cols=117  Identities=24%  Similarity=0.246  Sum_probs=73.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc------------
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL------------   86 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------   86 (159)
                      ..+||+++|.+|||||||+++|++.+..  ..+..+........+..++.  .+.++|++|.......            
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHH
Confidence            4589999999999999999999976642  33333333333334555654  4788899986443222            


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      ....++.+|++++|+|+.........   .++..+..  .+.|+++|+||+|+...+.
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~~---~~~~~~~~--~~~~~i~v~nK~D~~~~~~  137 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQDQ---RMAGLMER--RGRASVVVFNKWDLVVHRE  137 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH---HHHHHHHH--TTCEEEEEEECGGGSTTGG
T ss_pred             HHHHHhcCCEEEEeecccccchhhHH---HHHHHHHH--cCCceeeeccchhhhcchh
Confidence            12235679999999999865433222   34444433  3689999999999865443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.65  E-value=1.8e-16  Score=109.26  Aligned_cols=117  Identities=19%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-E-------EEEEECCeEEEEEEEeCCCcccccccccccc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-S-------ANVMVDGRTVNLGLWDTAGQEDYNRLRPLSY   91 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~-------~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   91 (159)
                      .+.++|+++|++++|||||+++|++.........+..... .       .....++  ..+.++|++|+..|.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            4678999999999999999999996543222111111100 0       0111222  4588999999998888888888


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ..+|++++++|+.+....+...  .| ..+..  .++|+++|.||+|+.+..
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~~--~~-~~~~~--~~~p~iiv~NKiD~~~~~  127 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTGE--HM-LILDH--FNIPIIVVITKSDNAGTE  127 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHH--HH-HHHHH--TTCCBCEEEECTTSSCHH
T ss_pred             hhccccccccccccccchhhhh--hh-hhhhh--cCCcceeccccccccCHH
Confidence            9999999999998754443332  22 22222  368999999999987543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=2.5e-17  Score=111.11  Aligned_cols=110  Identities=23%  Similarity=0.261  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-cc--------ccccc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP--TDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYN-RL--------RPLSY   91 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~--------~~~~~   91 (159)
                      +||+++|.+|||||||+++|++.+..  .....+...........++  ..+.+||++|..... ..        ....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            58999999999999999999976632  2222222222233444555  458899999943211 11        11125


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..+|++++|+|.+++.......   +...    ....++++++||.|+.+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~---~~~~----~~~~~~i~~~~k~d~~~  121 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRK---ILER----IKNKRYLVVINKVDVVE  121 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH---HHHH----HTTSSEEEEEEECSSCC
T ss_pred             HhCCEEEEEEeCCCCcchhhhh---hhhh----cccccceeeeeeccccc
Confidence            6799999999999876655432   2222    23678999999999865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=1e-15  Score=105.21  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccc-ceeeeeEEEEEECCeEEEEEEEeCCCcccc---------------cccc
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTFPTDYVP-TVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------------NRLR   87 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~   87 (159)
                      .|+++|.+|||||||+|+|++.+......+ ++..  .......+    +.+||+||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998776433222 2111  11222232    678999995221               1112


Q ss_pred             cccccCCcEEEEEEeCCChhhHHhhhh--------hhHHHHHhhhCCCCCEEEEeeCcccccCcc
Q 044772           88 PLSYRGADVFILAFSLISRPSYENISK--------KKWVPELRHYAPSVPIVLVGTKLDLRKDRQ  144 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~s~~~~~~--------~~~~~~i~~~~~~~piilv~nK~Dl~~~r~  144 (159)
                      ...++.++++++|+|..+.........        ..++..+..  .+.|+++|+||+|+.+..+
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~  138 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQ  138 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHH
Confidence            334577999999999875433221110        022333332  3689999999999865443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=3.2e-15  Score=105.13  Aligned_cols=113  Identities=20%  Similarity=0.155  Sum_probs=76.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC--------CCC----Ccc------cceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNT--------FPT----DYV------PTVFDNFSANVMVDGRTVNLGLWDTAGQEDY   83 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~--------~~~----~~~------~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   83 (159)
                      .++|+++|+.++|||||+++|+...        ...    ++.      ...-+.....+..++  .++.+.|+||+..|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            5899999999999999999996320        000    000      000011112333344  45889999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCccccc
Q 044772           84 NRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRK  141 (159)
Q Consensus        84 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~  141 (159)
                      .......+..+|++|+|+|+.+....+...  .| ..+..  .++| ++++.||+|+.+
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~--~~-~~~~~--~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTRE--HI-LLARQ--VGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHH--HH-HHHHH--TTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHH--HH-HHHHH--cCCCeEEEEEEecccCC
Confidence            988888889999999999998765554432  23 22222  2455 788899999865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=3.1e-16  Score=108.26  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccc----cccc---ccccC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVMV-DGRTVNLGLWDTAGQEDYN----RLRP---LSYRG   93 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~----~~~~---~~~~~   93 (159)
                      .+|.++|++|||||||+|+|.+.+.. ..+.++........... ++.  .+.+||+||.....    ....   ..+..
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIER   79 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHHH
Confidence            36899999999999999999876643 22333222212222233 333  47899999953211    1111   22356


Q ss_pred             CcEEEEEEeCCChhhHHhhhhhhHHHHHhh----hCCCCCEEEEeeCcccccCc
Q 044772           94 ADVFILAFSLISRPSYENISKKKWVPELRH----YAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        94 ~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~----~~~~~piilv~nK~Dl~~~r  143 (159)
                      ++.++++++..............+......    ...+.|+++|+||+|+.+.+
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~  133 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA  133 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH
Confidence            788888887665443322221011111111    11368999999999998654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.54  E-value=6.3e-15  Score=102.39  Aligned_cols=114  Identities=13%  Similarity=0.110  Sum_probs=63.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCcccc-------------ccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQEDY-------------NRL   86 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~   86 (159)
                      ...+|+|+|.+|||||||+++|++.+...........+. .........   +.+.|+++....             ...
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhhHHhh
Confidence            344899999999999999999997653222111111111 112222322   334555542111             111


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ....+..++++++++|+.++..-...   .+++.+..  .++|+++|+||+|+...
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~~~~---~~~~~l~~--~~~piivv~NK~D~~~~  149 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSNDDV---QMYEFLKY--YGIPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHH---HHHHHHHH--TTCCEEEEEECGGGSCG
T ss_pred             hhccccchhhhhhhhhcccccccccc---cccccccc--ccCcceechhhccccCH
Confidence            22345678899999998755332222   45555544  35899999999998543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.52  E-value=1.9e-14  Score=100.50  Aligned_cols=117  Identities=19%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC-----CCCC-Cc---c-cceee----e-eEEEEEECCeEEEEEEEeCCCccccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN-----TFPT-DY---V-PTVFD----N-FSANVMVDGRTVNLGLWDTAGQEDYNRL   86 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~-----~~~~-~~---~-~t~~~----~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~   86 (159)
                      .++|+++|+.++|||||+++|++.     .... .+   . ...+.    + ......+......+.+.|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            589999999999999999999741     1000 00   0 00010    0 1112233333456899999999999888


Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ....+..+|++|+|+|+.+...-+..   +.+..+... ...|+||+.||+|+..+
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT~---~~~~~a~~~-~~~~iIv~iNK~D~~~~  134 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQTR---EHLLLARQI-GVEHVVVYVNKADAVQD  134 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHH---HHHHHHHHT-TCCCEEEEEECGGGCSC
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhHH---HHHHHHHHh-cCCcEEEEEeccccccc
Confidence            78888999999999999875433322   222222221 24679999999998653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=1.6e-14  Score=105.58  Aligned_cols=115  Identities=16%  Similarity=0.105  Sum_probs=80.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccee-------------------eeeEEEEEECCeEEEEEEEeCCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVF-------------------DNFSANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------~~~~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      .+..+|+++|+.++|||||+.+++...-........+                   ......+..++  .+++++||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCch
Confidence            3456899999999999999999973211101000000                   00012233344  56999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           81 EDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ..|.......+..+|++|+|+|..+.-......  .|-..-.   .++|.+++.||+|.+.
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~--~w~~a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET--VWRQAEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHH--HHHHHHT---TTCCEEEEEECTTSTT
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHH--HHHHHHH---cCCCEEEEEecccccc
Confidence            999999999999999999999999766555554  4533322   3799999999999865

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.46  E-value=1.3e-13  Score=99.94  Aligned_cols=122  Identities=14%  Similarity=0.105  Sum_probs=74.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CC-cccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-------ccc-
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFP-TD-YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRL-------RPL-   89 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~-   89 (159)
                      ...++|+++|.+|+|||||+|.+++.... .. ..++...........++.  .+.++||||-......       ... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHHH
Confidence            45789999999999999999999987643 22 223333333334455664  5899999995322111       111 


Q ss_pred             -cccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC-C--CCCEEEEeeCcccccCccc
Q 044772           90 -SYRGADVFILAFSLISRPSYENISKKKWVPELRHYA-P--SVPIVLVGTKLDLRKDRQF  145 (159)
Q Consensus        90 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~~r~v  145 (159)
                       .....++++||++++... |..... ..+..+.... +  -.+++||.||+|....+..
T Consensus       108 ~~~~~~~~il~v~~~~~~r-~~~~~~-~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~  165 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYR-VDNLDK-LVAKAITDSFGKGIWNKAIVALTHAQFSPPDGL  165 (257)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHH-HHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGC
T ss_pred             HhcCCCCeEEEEEECCCCC-CCHHHH-HHHHHHHHHcchhhhhCEEEEEECcccCCcCCC
Confidence             123577888998887532 322221 3333333322 1  2478999999998654443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.46  E-value=5.3e-14  Score=97.89  Aligned_cols=122  Identities=16%  Similarity=0.073  Sum_probs=77.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----cceeeeeEE-EEE-------------------ECCeEEEEE
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYV-----PTVFDNFSA-NVM-------------------VDGRTVNLG   73 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----~t~~~~~~~-~~~-------------------~~~~~~~~~   73 (159)
                      ....++|+++|+.++|||||+++|.+........     -+....+.. ...                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            3466899999999999999999998643221100     000000100 000                   011235689


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           74 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        74 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      +.|+||+..|.......+..+|+++++.|..+........  ..+..+... ...+++++.||+|+.+..
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~--e~~~~~~~~-~~~~iiv~inK~D~~d~~  148 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR--EHLMALQII-GQKNIIIAQNKIELVDKE  148 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH--HHHHHHHHH-TCCCEEEEEECGGGSCHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhH--HHHHHHHHh-cCccceeeeecccchhhH
Confidence            9999999999888888888999999999988653222222  222222222 235689999999987643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.44  E-value=1.1e-13  Score=97.14  Aligned_cols=121  Identities=17%  Similarity=0.064  Sum_probs=74.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---cc--cceeeee-EEEEEE------------------------CCeE
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTD---YV--PTVFDNF-SANVMV------------------------DGRT   69 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~--~t~~~~~-~~~~~~------------------------~~~~   69 (159)
                      ...++|+++|+.++|||||+++|++..-...   ..  .+....+ ......                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4458999999999999999999986332100   00  0000000 000000                        0112


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           70 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ..+.+.|+||+..|.......+..+|++|+|+|+.+.-.-....  ..+..+.. ..-.|++|+.||+|+.+..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~--e~~~~~~~-~~i~~iIV~vNK~Dl~~~~  156 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR--EHFVALGI-IGVKNLIIVQNKVDVVSKE  156 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHH--HHHHHHHH-TTCCCEEEEEECGGGSCHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHH--HHHHHHHH-cCCceeeeccccCCCccch
Confidence            46899999999999887777788999999999998642111111  22222222 1235899999999997543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.44  E-value=1.6e-13  Score=99.86  Aligned_cols=112  Identities=21%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCc-----ccc-------------eeeeeEEEEEECCeEEEEEEEeCCCccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTF-PTDY-----VPT-------------VFDNFSANVMVDGRTVNLGLWDTAGQED   82 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~-----~~t-------------~~~~~~~~~~~~~~~~~~~i~D~~g~~~   82 (159)
                      ..+|+++|+.++|||||+.+|+...- ....     ..+             .-......+..++  .+++++||||+..
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~d   79 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGG
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhh
Confidence            35799999999999999999963221 1100     000             0000112333444  4589999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           83 YNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        83 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      |.......+..+|++|+|+|..+.-......  .|.. +.+  .++|.+++.||+|..
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~--~~~~-~~~--~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTER--AWTV-AER--LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHH-HHH--TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHH--HHHh-hhh--ccccccccccccccc
Confidence            9998888999999999999998765554443  3432 222  368999999999974

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=1.9e-13  Score=102.62  Aligned_cols=116  Identities=18%  Similarity=0.191  Sum_probs=78.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc--CCCCCC------cccceeee---------eEEEEEE--------------CCe
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG--NTFPTD------YVPTVFDN---------FSANVMV--------------DGR   68 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~------~~~t~~~~---------~~~~~~~--------------~~~   68 (159)
                      ....+|+++|+.++|||||+.+|+.  +.....      +.-+...+         ....+..              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            3455799999999999999999972  211110      00000000         0011111              235


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccc
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLR  140 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  140 (159)
                      .+.+++.||||+..|.......++-+|++|+|+|+.+.-..+...  .|-....   .++|++++.||+|..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~--~~~~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET--VLRQALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH--HHHHHHH---TTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH--HHHHHHH---cCCCeEEEEECcccc
Confidence            678999999999999999889999999999999999765555443  3333332   378999999999974

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.37  E-value=1.9e-12  Score=91.78  Aligned_cols=120  Identities=17%  Similarity=0.081  Sum_probs=74.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC----cc------cce-------------------eee-eEEEEEEC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGN--TFPTD----YV------PTV-------------------FDN-FSANVMVD   66 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~----~~------~t~-------------------~~~-~~~~~~~~   66 (159)
                      ....+||+++|..++|||||+.+|+..  .+...    +.      .+.                   +.. ........
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            346789999999999999999999732  11100    00      000                   000 00111112


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCC-EEEEeeCcccccCc
Q 044772           67 GRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVP-IVLVGTKLDLRKDR  143 (159)
Q Consensus        67 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~r  143 (159)
                      .....+.+.|+||+..|.......+..+|++|+|+|+.+...-+...   .+..+..  .+++ ++++.||+|+.+..
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e---~~~~~~~--~gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR---HSYIASL--LGIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH---HHHHHHH--TTCCEEEEEEECTTTTTSC
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH---HHHHHHH--cCCCEEEEEEEcccccccc
Confidence            22245899999999999888778888999999999988643333222   1111111  2444 89999999997643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.1e-12  Score=100.46  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccc--eeeee-EEEEEECCeEEEEEEEeCCCcccccccc-----cccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTFPTD-YVPT--VFDNF-SANVMVDGRTVNLGLWDTAGQEDYNRLR-----PLSY   91 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~~   91 (159)
                      .+++|+|+|.+|||||||+|.|++...... ..++  .+.+. ...+...+. -.+.+|||||........     ...+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC-TTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC-CeEEEEeCCCcccccccHHHHHHHhhh
Confidence            468999999999999999999997553221 1111  11111 112222221 237799999965432211     2235


Q ss_pred             cCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           92 RGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        92 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      ..+|.++++.|..    |...+. .++..+.+  .+.|+++|.||+|.
T Consensus       134 ~~~d~~l~~~~~~----~~~~d~-~l~~~l~~--~~k~~~~V~nK~D~  174 (400)
T d1tq4a_         134 YEYDFFIIISATR----FKKNDI-DIAKAISM--MKKEFYFVRTKVDS  174 (400)
T ss_dssp             GGCSEEEEEESSC----CCHHHH-HHHHHHHH--TTCEEEEEECCHHH
T ss_pred             hcceEEEEecCCC----CCHHHH-HHHHHHHH--cCCCEEEEEeCccc
Confidence            5678887776633    222222 44444444  35899999999996

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=3.6e-12  Score=86.68  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=67.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccc-ceeeeeEEEEEECCeEEEEEEEeCCCcccc---------ccccccc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVP-TVFDNFSANVMVDGRTVNLGLWDTAGQEDY---------NRLRPLS   90 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~   90 (159)
                      .-.|+|+|.+|||||||+|+|++.+.. ..+.+ +...........+..  .+..||.++....         .......
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccccc
Confidence            346999999999999999999987643 12222 222222323333443  3566787764321         1222334


Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      ...++.++++.|..+.....  .  .+...+..  ...|+++|.||.|....+
T Consensus        83 ~~~~~~~l~~~d~~~~~~~~--~--~~~~~l~~--~~~~~i~v~~k~d~~~~~  129 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPDD--E--MVLNKLRE--GKAPVILAVNKVDNVQEK  129 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHHH--H--HHHHHHHS--SSSCEEEEEESTTTCCCH
T ss_pred             hhhcceeEEEEecCccchhH--H--HHHHHhhh--ccCceeeeeeeeeccchh
Confidence            55677888888876432221  1  22222322  457899999999976654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.22  E-value=4e-12  Score=90.17  Aligned_cols=119  Identities=13%  Similarity=0.106  Sum_probs=72.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC--CCCC------------------cc---c--ceee----e-eEEEEEECCeEEE
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNT--FPTD------------------YV---P--TVFD----N-FSANVMVDGRTVN   71 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~------------------~~---~--t~~~----~-~~~~~~~~~~~~~   71 (159)
                      .++|+++|+-++|||||+.+|+...  ....                  +.   .  ..+.    . .............
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            5899999999999999999886321  1000                  00   0  0000    0 0111112233356


Q ss_pred             EEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhh--hhhhHHHH--HhhhCCCCCEEEEeeCccccc
Q 044772           72 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENI--SKKKWVPE--LRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        72 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~--i~~~~~~~piilv~nK~Dl~~  141 (159)
                      +.+.|+||+..|.......+.-+|++|+|+|+.+...-...  .. ...+.  +.......+++++.||+|+..
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~-qt~e~l~~~~~~~~~~iIv~iNK~D~~~  155 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEG-QTREHIILAKTMGLDQLIVAVNKMDLTE  155 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTC-HHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccc-hhHHHHHHHHHhCCCceEEEEEcccCCC
Confidence            99999999999999888889999999999999964321111  00 01111  111122356899999999863

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=5.6e-12  Score=90.25  Aligned_cols=116  Identities=15%  Similarity=0.024  Sum_probs=74.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------Cc-------------ccceeeeeEEEEEECC
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGN--TFPT------------------DY-------------VPTVFDNFSANVMVDG   67 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~--~~~~------------------~~-------------~~t~~~~~~~~~~~~~   67 (159)
                      ..++|+++|+.++|||||+.+|+..  ....                  .+             .-|+.. ....+..+ 
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~-~~~~~~~~-   82 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDI-ALWKFETP-   82 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSC-SCEEEECS-
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceecccc-ceeEeccC-
Confidence            3589999999999999999999621  1100                  00             001111 11122233 


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHH------hhhhhhHHHHHhhhCCCCC-EEEEeeCcccc
Q 044772           68 RTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYE------NISKKKWVPELRHYAPSVP-IVLVGTKLDLR  140 (159)
Q Consensus        68 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~  140 (159)
                       ..++++.|+||+..|.......+..+|++|+|+|+.......      ...+ .|.. ...  -++| ++++.||+|+.
T Consensus        83 -~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~e-h~~~-~~~--~gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          83 -KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALL-AFT--LGVRQLIVAVNKMDSV  157 (239)
T ss_dssp             -SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHH-HHH--TTCCEEEEEEECGGGG
T ss_pred             -CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHH-HHHH-HHH--cCCCeEEEEEECCCCC
Confidence             357999999999999988888899999999999998542211      1111 2211 111  1455 88999999987


Q ss_pred             cCc
Q 044772          141 KDR  143 (159)
Q Consensus       141 ~~r  143 (159)
                      +..
T Consensus       158 ~~d  160 (239)
T d1f60a3         158 KWD  160 (239)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.9e-11  Score=83.20  Aligned_cols=120  Identities=10%  Similarity=-0.027  Sum_probs=57.4

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC--cccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------c-
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYTGNTFPTD--YVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNR-------L-   86 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~-   86 (159)
                      .+....++|+++|.+|||||||+|+|.+.+....  ..++.... ............+..++..+......       . 
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL-INLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC-EEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceee-ccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            3466789999999999999999999988764322  11121111 11222222222222222222111111       1 


Q ss_pred             --ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           87 --RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        87 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                        ..........++.+.+..........   .++..+..  ...++++++||+|+.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~v~~k~D~~~~  142 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ---QMIEWAVD--SNIAVLVLLTKADKLAS  142 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH---HHHHHHHH--TTCCEEEEEECGGGSCH
T ss_pred             hhhhhhhhheeEEEEeecccccchhHHH---HHHHHhhh--ccccccchhhhhhccCH
Confidence              11112334445555555543222221   44444433  35789999999998653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.11  E-value=4e-10  Score=80.72  Aligned_cols=120  Identities=17%  Similarity=0.108  Sum_probs=61.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------------cccceeeee-EEEE-----EECCe
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGNT--FPTD----------------------YVPTVFDNF-SANV-----MVDGR   68 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~----------------------~~~t~~~~~-~~~~-----~~~~~   68 (159)
                      ....++|+++|+-++|||||+.+|+...  +...                      ......... ...+     .....
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            3456799999999999999999995311  1000                      000000000 0011     11112


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhh----hhhhHHHHHhhhCCCC-CEEEEeeCcccc
Q 044772           69 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENI----SKKKWVPELRHYAPSV-PIVLVGTKLDLR  140 (159)
Q Consensus        69 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~----~~~~~~~~i~~~~~~~-piilv~nK~Dl~  140 (159)
                      ...+.+.|+||+..|..........+|++++|+|+.+...-...    +....+..+..  .++ +++++.||+|+.
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~--~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEP  175 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTST
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH--cCCCeEEEEEEcCCCC
Confidence            24689999999999999888888999999999999864211111    00011111111  234 488999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=4.6e-09  Score=76.76  Aligned_cols=117  Identities=18%  Similarity=0.175  Sum_probs=68.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccceeeeeEEEEE--------E---CC----------------------
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTVFDNFSANVM--------V---DG----------------------   67 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~--------~---~~----------------------   67 (159)
                      ..+|+|+|.-++|||||+|.|++..+. ....+++.........        .   .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            447999999999999999999998863 3333332111000000        0   00                      


Q ss_pred             -----------------eEEEEEEEeCCCcccc-------------cccccccccCCcE-EEEEEeCCChhhHHhhhhhh
Q 044772           68 -----------------RTVNLGLWDTAGQEDY-------------NRLRPLSYRGADV-FILAFSLISRPSYENISKKK  116 (159)
Q Consensus        68 -----------------~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~  116 (159)
                                       ....+.++|+||-...             ..+...|+...+. +++|.+.....+-....  .
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~--~  183 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--K  183 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH--H
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH--H
Confidence                             0112779999995321             1234456666665 45566665544433333  4


Q ss_pred             HHHHHhhhCCCCCEEEEeeCcccccC
Q 044772          117 WVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus       117 ~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      |.+.+..  ...++++|.||+|+.+.
T Consensus       184 ~~~~~~~--~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         184 IAKEVDP--QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCT
T ss_pred             HHHHhCc--CCCceeeEEeccccccc
Confidence            5554433  24689999999998654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.81  E-value=5.2e-09  Score=76.77  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=24.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP   48 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~   48 (159)
                      ..+|+|+|..++|||||+|.|++..+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            347999999999999999999998874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.73  E-value=2.3e-08  Score=73.65  Aligned_cols=83  Identities=17%  Similarity=0.074  Sum_probs=45.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccce-eeeeEEEE---------------------EECCeEEEEEEEeCCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV-FDNFSANV---------------------MVDGRTVNLGLWDTAG   79 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~-~~~~~~~~---------------------~~~~~~~~~~i~D~~g   79 (159)
                      .||.++|.|+||||||+|.|.+.+.. .+|..|+ ..+.....                     ........++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            37999999999999999999976643 3333232 21111110                     0012346799999998


Q ss_pred             ccc-------ccccccccccCCcEEEEEEeCCC
Q 044772           80 QED-------YNRLRPLSYRGADVFILAFSLIS  105 (159)
Q Consensus        80 ~~~-------~~~~~~~~~~~~~~~i~v~d~~~  105 (159)
                      --.       .....-..++++|+++.|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            421       12222344678999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.59  E-value=4.9e-08  Score=71.33  Aligned_cols=84  Identities=20%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccce-eeeeEEEEEECC---------------eEEEEEEEeCCCccc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTGNTF--PTDYVPTV-FDNFSANVMVDG---------------RTVNLGLWDTAGQED   82 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~-~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~   82 (159)
                      ..+||-+||.|+||||||++.+.+...  ..+|..|+ ..+. ..+.+.+               ....+++.|++|--.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~-g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE-AKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE-EEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCe-EEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            457999999999999999999997643  45555544 3222 2233332               124688999997321


Q ss_pred             ----cc---ccccccccCCcEEEEEEeCCC
Q 044772           83 ----YN---RLRPLSYRGADVFILAFSLIS  105 (159)
Q Consensus        83 ----~~---~~~~~~~~~~~~~i~v~d~~~  105 (159)
                          -.   ...-..++.+|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                11   123344688999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=6.4e-08  Score=69.94  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=35.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEEEECCeEEEEEEEeCCCc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANVMVDGRTVNLGLWDTAGQ   80 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   80 (159)
                      ...++++|+|.||||||||+|+|.+.+.... .+..+.+. ...+..+.   .+.++||||-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~-~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEE-CCcccccccceEEECCC---CeEEecCCCc
Confidence            4678999999999999999999998764322 11122211 11222332   2789999995

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.49  E-value=8.2e-08  Score=69.49  Aligned_cols=82  Identities=21%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccce-eeeeEEEEEECCe---------------EEEEEEEeCCCcc---
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFP-TDYVPTV-FDNFSANVMVDGR---------------TVNLGLWDTAGQE---   81 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~---   81 (159)
                      .+||-+||.|+||||||++++.+.+.. .+|..|+ +.+.. .+.+.+.               ...+.+.|++|--   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~g-vv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceE-EEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            478999999999999999999976643 3343333 33221 2222221               1248899999831   


Q ss_pred             -ccccc---ccccccCCcEEEEEEeCC
Q 044772           82 -DYNRL---RPLSYRGADVFILAFSLI  104 (159)
Q Consensus        82 -~~~~~---~~~~~~~~~~~i~v~d~~  104 (159)
                       .=..+   .-..++++|+++.|+|+.
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence             11122   234467899999999863

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.46  E-value=1.4e-08  Score=71.48  Aligned_cols=70  Identities=14%  Similarity=0.086  Sum_probs=39.2

Q ss_pred             EEEEEeCCCcccccccccc---c--ccCCcEEEEEEeCC---ChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           71 NLGLWDTAGQEDYNRLRPL---S--YRGADVFILAFSLI---SRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        71 ~~~i~D~~g~~~~~~~~~~---~--~~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      .+.+.|++|+..+......   .  ....+.++++.|..   ++..+....   +........-..|.++|.||+|+...
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~---l~~~~~~~~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR---FFALLIDLRLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHH---HHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHH---HHHHHHHHHhCCCceeeeeccccccH
Confidence            4788999998654332111   1  12355788888864   333332221   11111111126899999999998754


Q ss_pred             c
Q 044772          143 R  143 (159)
Q Consensus       143 r  143 (159)
                      .
T Consensus       173 ~  173 (244)
T d1yrba1         173 E  173 (244)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1.6e-07  Score=65.91  Aligned_cols=26  Identities=19%  Similarity=0.018  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      ....+++|++|||||||+|+|.++..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhh
Confidence            34679999999999999999987643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.1e-06  Score=64.91  Aligned_cols=24  Identities=13%  Similarity=0.216  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .+.++|.|.|+||+|||||+++|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            457899999999999999999996

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=3.8e-07  Score=64.10  Aligned_cols=25  Identities=24%  Similarity=0.202  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .-..+++|++|||||||+|+|.++.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             cceEEEECCCCccHHHHHHhhccHh
Confidence            3467899999999999999999764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.00  E-value=4e-06  Score=61.74  Aligned_cols=61  Identities=15%  Similarity=0.101  Sum_probs=33.2

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccCc
Q 044772           71 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKDR  143 (159)
Q Consensus        71 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~r  143 (159)
                      .+.+.+|.|.-.-...   ...-+|.+++|......+..+.++. -.++        .+=++|.||+|+.+..
T Consensus       145 d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~-gilE--------~aDi~vvNKaD~~~~~  205 (323)
T d2qm8a1         145 DVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKK-GIFE--------LADMIAVNKADDGDGE  205 (323)
T ss_dssp             CEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCT-THHH--------HCSEEEEECCSTTCCH
T ss_pred             CeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhh-hHhh--------hhheeeEeccccccch
Confidence            4555565553222111   2234889999999887666665553 3333        3458999999986543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.90  E-value=3.2e-06  Score=56.20  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.80  E-value=6e-06  Score=54.47  Aligned_cols=26  Identities=19%  Similarity=0.143  Sum_probs=22.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++..+|++.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            35678999999999999999998864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.80  E-value=5.2e-06  Score=55.07  Aligned_cols=24  Identities=13%  Similarity=0.108  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+|+|+|++|+|||||+++|..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.72  E-value=8e-06  Score=53.67  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+|+++|++||||||+.++|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.70  E-value=1.1e-05  Score=54.61  Aligned_cols=26  Identities=12%  Similarity=0.216  Sum_probs=23.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +.+..+|+|+|+|||||||+..+|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            35778999999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.70  E-value=1.3e-05  Score=54.21  Aligned_cols=26  Identities=12%  Similarity=-0.018  Sum_probs=22.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+++.-|+|+|+|||||||+..+|..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45667889999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.68  E-value=1.2e-05  Score=54.10  Aligned_cols=23  Identities=17%  Similarity=0.133  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      +.++|+++|+|||||||+...|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999998886

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.4e-05  Score=52.35  Aligned_cols=21  Identities=24%  Similarity=0.083  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++|+|.+|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999999974

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.59  E-value=1.9e-05  Score=50.93  Aligned_cols=20  Identities=15%  Similarity=0.197  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      |++.|++|||||||+++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.55  E-value=1.8e-05  Score=53.30  Aligned_cols=23  Identities=17%  Similarity=0.016  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .+.+|+|+|++||||||++..|.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999998775

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.52  E-value=2.7e-05  Score=51.74  Aligned_cols=21  Identities=14%  Similarity=0.028  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .||+|+|+|||||||+...|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999998775

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.46  E-value=3.3e-05  Score=50.42  Aligned_cols=21  Identities=14%  Similarity=0.151  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -|++.|++||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388899999999999998874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3e-05  Score=50.10  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=4e-05  Score=51.12  Aligned_cols=22  Identities=9%  Similarity=0.202  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .||+++|+|||||||+..+|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.44  E-value=4e-05  Score=51.17  Aligned_cols=22  Identities=14%  Similarity=-0.000  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+|+|+|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988763

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=5e-05  Score=50.68  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+|+|+|++||||||+...|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988863

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=4.8e-05  Score=50.62  Aligned_cols=21  Identities=10%  Similarity=0.072  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .||+|+|+|||||||+..+|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999998775

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=4.8e-05  Score=51.50  Aligned_cols=22  Identities=32%  Similarity=0.126  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999998873

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=8e-05  Score=49.56  Aligned_cols=25  Identities=16%  Similarity=0.012  Sum_probs=20.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +.+.=|+++|.+||||||+..++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445689999999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.36  E-value=4.3e-05  Score=50.26  Aligned_cols=21  Identities=24%  Similarity=0.109  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .||+++|.+||||||+...|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            368999999999999987774

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.35  E-value=7.3e-05  Score=49.01  Aligned_cols=24  Identities=13%  Similarity=-0.003  Sum_probs=20.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .+..-|.++|.+||||||+...|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            455678899999999999987765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.5e-05  Score=50.86  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+|+|++||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999743

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6.9e-05  Score=50.35  Aligned_cols=23  Identities=9%  Similarity=0.001  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +..|+|+|+|||||||+..+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999987753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.8e-05  Score=50.23  Aligned_cols=20  Identities=15%  Similarity=0.154  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      |+|+||+|+||+||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999984

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=6.6e-05  Score=50.14  Aligned_cols=21  Identities=24%  Similarity=0.271  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+|+|++||||+||+++|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999998743

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.29  E-value=6.8e-05  Score=49.25  Aligned_cols=20  Identities=25%  Similarity=0.248  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      +.|+|.+|||||||+++|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999998864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7.3e-05  Score=49.13  Aligned_cols=20  Identities=25%  Similarity=0.265  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      .|++.|++|+|||+|+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48899999999999998886

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.27  E-value=6.7e-05  Score=49.23  Aligned_cols=20  Identities=20%  Similarity=0.125  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      +|+++|++||||||+...|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999988774

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=9.1e-05  Score=52.07  Aligned_cols=22  Identities=18%  Similarity=-0.000  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +++|+|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6999999999999999988753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=9.7e-05  Score=49.83  Aligned_cols=19  Identities=26%  Similarity=0.265  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      |+|+||+||||+||+++|.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~   21 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLF   21 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8899999999999999886

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=9.6e-05  Score=50.64  Aligned_cols=21  Identities=14%  Similarity=0.268  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+|+||+||||+||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999743

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.21  E-value=0.0001  Score=48.32  Aligned_cols=20  Identities=10%  Similarity=0.121  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      |++.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00015  Score=48.80  Aligned_cols=23  Identities=9%  Similarity=-0.042  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..-|+++|+|||||||+...|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44589999999999999998864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=9.7e-05  Score=48.26  Aligned_cols=21  Identities=14%  Similarity=0.097  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      =++++|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366789999999999998864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.18  E-value=0.0001  Score=48.58  Aligned_cols=19  Identities=21%  Similarity=-0.006  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      |+|.|++||||||++++|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6778999999999998874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.17  E-value=0.00011  Score=50.22  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -++++|++|+|||||++.+.+-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4789999999999999988753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.15  E-value=0.00012  Score=51.43  Aligned_cols=22  Identities=9%  Similarity=-0.025  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++++|++|+|||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999988653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.15  E-value=0.00015  Score=50.84  Aligned_cols=24  Identities=17%  Similarity=0.004  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      +.-|++.|+||+|||+|+..+...
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            445999999999999999988754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00013  Score=51.02  Aligned_cols=22  Identities=32%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -+.++|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4889999999999999988654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.13  E-value=0.00012  Score=51.82  Aligned_cols=21  Identities=19%  Similarity=0.164  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++++|++|+|||||++.+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            699999999999999988864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00013  Score=51.50  Aligned_cols=21  Identities=14%  Similarity=0.115  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .++++|++|+|||||++.+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999998865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.10  E-value=0.00014  Score=50.97  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -++++|++|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36789999999999999887643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.10  E-value=0.00013  Score=50.85  Aligned_cols=21  Identities=14%  Similarity=0.067  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -+.++|++|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            488999999999999987764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00017  Score=49.03  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-++++||++|||||++++.|..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            34799999999999999977653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.08  E-value=0.00016  Score=47.16  Aligned_cols=20  Identities=10%  Similarity=0.189  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      |+|.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            44559999999999998874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.06  E-value=0.00016  Score=47.58  Aligned_cols=20  Identities=15%  Similarity=0.042  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      .|+++|.+||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47899999999999988774

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.05  E-value=0.00017  Score=50.54  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            48999999999999999887643

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00017  Score=51.84  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .++|+|++|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999988753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.03  E-value=0.00017  Score=48.50  Aligned_cols=22  Identities=14%  Similarity=-0.058  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+|+|+|||||||+..+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3478899999999999998864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00011  Score=49.05  Aligned_cols=23  Identities=13%  Similarity=0.055  Sum_probs=19.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      +..-|+++|.+||||||+.+.|.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34567899999999999998885

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00022  Score=50.87  Aligned_cols=23  Identities=22%  Similarity=0.150  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-++++||++|||||++++.|..
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHH
Confidence            34799999999999999887653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00031  Score=50.26  Aligned_cols=60  Identities=20%  Similarity=0.080  Sum_probs=36.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceeeee-EEEE---E-ECCeEEEEEEEeCCCcc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNTFPTDYVPTVFDNF-SANV---M-VDGRTVNLGLWDTAGQE   81 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~---~-~~~~~~~~~i~D~~g~~   81 (159)
                      ..=|.++|+.++|||+|+|+|++..+.-...++....+ ...+   . .++....+.++|+.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            44678899999999999999997764322222211111 1111   1 13334458889998854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.95  E-value=0.00015  Score=50.51  Aligned_cols=23  Identities=26%  Similarity=0.213  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+.++|++|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            38899999999999999988643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.94  E-value=0.00024  Score=49.83  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+.++|++|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            48899999999999999887543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0002  Score=50.16  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999888653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.92  E-value=0.00014  Score=51.45  Aligned_cols=21  Identities=19%  Similarity=0.099  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +++++|++|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            699999999999999876654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.88  E-value=0.00027  Score=49.57  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999887643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.88  E-value=0.00026  Score=46.69  Aligned_cols=20  Identities=25%  Similarity=0.189  Sum_probs=16.7

Q ss_pred             EEE-EEcCCCCCHHHHHHHHh
Q 044772           24 KCV-TVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~-vvG~~~~GKSsli~~l~   43 (159)
                      ||+ |.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            454 56999999999998884

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00028  Score=48.81  Aligned_cols=22  Identities=18%  Similarity=0.092  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+++.||||+|||++++.+.+
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00021  Score=49.79  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -+.++|++|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            388999999999999999886

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.00032  Score=48.45  Aligned_cols=21  Identities=19%  Similarity=0.178  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+++.||||+|||++++.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999988864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.0006  Score=46.84  Aligned_cols=25  Identities=16%  Similarity=0.008  Sum_probs=20.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      +.++.-|+++|++||||||.+-+|.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            4556788999999999999987765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00035  Score=48.89  Aligned_cols=23  Identities=17%  Similarity=0.021  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      -+.++|++|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37799999999999999887654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.00075  Score=47.94  Aligned_cols=49  Identities=12%  Similarity=0.061  Sum_probs=35.5

Q ss_pred             ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           87 RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        87 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ....++.+|.+++|.|+.+|-+...    ..++.+.   .+.|+++|.||+|+.+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~----~~l~~~~---~~Kp~IlVlNK~DLv~~   57 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN----PMIEDIL---KNKPRIMLLNKADKADA   57 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC----HHHHHHC---SSSCEEEEEECGGGSCH
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC----HHHHHHH---cCCCeEEEEECccCCch
Confidence            3456889999999999988766442    2222222   36799999999999753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.76  E-value=0.00057  Score=45.32  Aligned_cols=23  Identities=17%  Similarity=-0.058  Sum_probs=19.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .++=|.|-|++|||||||.++|.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34558899999999999999886

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.76  E-value=0.00046  Score=46.14  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=22.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           18 TATKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...+++-|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            345667899999999999999998864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.73  E-value=0.0002  Score=50.21  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+.++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4899999999999999988763

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.72  E-value=0.00042  Score=49.05  Aligned_cols=21  Identities=14%  Similarity=0.116  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -+.++|++|+|||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            488999999999999998875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.72  E-value=0.0005  Score=46.81  Aligned_cols=24  Identities=17%  Similarity=0.102  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +.++|++-|++||||||+..+|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346788889999999999987763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.71  E-value=0.00042  Score=48.89  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      +.++|++|+|||||++.+.+-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            789999999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.69  E-value=0.00044  Score=48.16  Aligned_cols=21  Identities=10%  Similarity=0.055  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -++|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477889999999999998864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.69  E-value=0.00056  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.161  Sum_probs=19.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      +..-|+++|++||||||.+-+|.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            44567899999999999987774

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.66  E-value=0.00074  Score=47.30  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...|++.|++|+|||+|++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45799999999999999998874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.63  E-value=0.00051  Score=49.72  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...++++||||+|||.|.+.+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35689999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.62  E-value=0.00056  Score=46.99  Aligned_cols=21  Identities=19%  Similarity=0.197  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999988865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00076  Score=46.77  Aligned_cols=24  Identities=17%  Similarity=0.123  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ...+++.|++|+|||+++..+.+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998854

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.56  E-value=0.00087  Score=45.94  Aligned_cols=23  Identities=13%  Similarity=-0.091  Sum_probs=15.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .+.-|+++|++||||||.+-+|.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45568889999999999987775

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.52  E-value=0.00087  Score=46.51  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999888743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.49  E-value=0.00068  Score=49.46  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+|+|.|+.|+|||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            36999999999999999999853

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.001  Score=45.55  Aligned_cols=22  Identities=23%  Similarity=0.137  Sum_probs=18.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      +.-|+++|++||||||.+-+|.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4558899999999999998875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.42  E-value=0.00075  Score=51.33  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +-+|++|||+|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998853

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.41  E-value=0.0013  Score=45.93  Aligned_cols=21  Identities=19%  Similarity=0.110  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      +++.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999988743

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.00092  Score=45.80  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+++.|++|+|||++++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999888753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.00096  Score=45.60  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999987763

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.36  E-value=0.001  Score=45.48  Aligned_cols=19  Identities=21%  Similarity=0.071  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      ++++|++||||||.+-+|.
T Consensus        13 i~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6779999999999998775

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0013  Score=44.55  Aligned_cols=22  Identities=14%  Similarity=-0.006  Sum_probs=19.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 044772           22 FIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ++-|.|-|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4668899999999999998774

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0011  Score=44.80  Aligned_cols=20  Identities=15%  Similarity=0.069  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      |++.|+|||||+|+...|..
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56669999999999887763

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.00066  Score=50.78  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHH----HHhcCCCC
Q 044772           22 FIKCVTVRDGAVGKTCLLI----SYTGNTFP   48 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~----~l~~~~~~   48 (159)
                      .-++++||++|||||++++    ++..+..+
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~~~~vp   73 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP   73 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence            3468999999999999985    44455443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.00086  Score=46.40  Aligned_cols=22  Identities=9%  Similarity=0.090  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+++.|++|+|||+++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999888753

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0011  Score=45.20  Aligned_cols=22  Identities=14%  Similarity=0.205  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+++.|++|+|||+++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999988754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.0012  Score=46.27  Aligned_cols=22  Identities=32%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+++.|++|+|||+|++.+..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3599999999999999999985

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.23  E-value=0.0017  Score=44.18  Aligned_cols=27  Identities=15%  Similarity=0.091  Sum_probs=21.9

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           17 TTATKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ....+..-|.+.|.||+|||||.+.|.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            344556678999999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0016  Score=45.81  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+++.|+||+|||+|++.+..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4699999999999999998875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0017  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+++.|+||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4599999999999999998874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.002  Score=42.85  Aligned_cols=24  Identities=13%  Similarity=-0.051  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      =++|.|++|+|||+|+..+..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            367889999999999999886543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.95  E-value=0.0027  Score=42.13  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .-|++.|++|+|||++...|+...
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988544

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.93  E-value=0.0023  Score=42.85  Aligned_cols=20  Identities=15%  Similarity=0.086  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      -|+|-|..||||||++..|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999998775

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.90  E-value=0.0052  Score=39.98  Aligned_cols=24  Identities=25%  Similarity=0.109  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .-|++-|+=|+|||+|++.++..-
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhc
Confidence            347788999999999999888543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.00042  Score=45.85  Aligned_cols=18  Identities=11%  Similarity=0.289  Sum_probs=15.8

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 044772           26 VTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        26 ~vvG~~~~GKSsli~~l~   43 (159)
                      +|+|++|+|||||+..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            567999999999998874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0022  Score=45.20  Aligned_cols=24  Identities=17%  Similarity=0.051  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ...|++.|++|+|||+|++.+...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            345999999999999999998753

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.79  E-value=0.0033  Score=41.75  Aligned_cols=24  Identities=8%  Similarity=0.213  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .-+++.|++|+|||++...|...-
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0026  Score=43.28  Aligned_cols=23  Identities=13%  Similarity=-0.023  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      =++|.|++|+|||+|+.++..+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47788999999999999987554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.77  E-value=0.0027  Score=43.59  Aligned_cols=24  Identities=17%  Similarity=-0.051  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      =++|.|++|+|||+|..++..+-.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            478889999999999998875443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.75  E-value=0.0018  Score=46.07  Aligned_cols=17  Identities=18%  Similarity=0.253  Sum_probs=15.7

Q ss_pred             EEEcCCCCCHHHHHHHH
Q 044772           26 VTVRDGAVGKTCLLISY   42 (159)
Q Consensus        26 ~vvG~~~~GKSsli~~l   42 (159)
                      +++|+.|+|||+++..+
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            78899999999999877

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.65  E-value=0.0038  Score=41.31  Aligned_cols=23  Identities=13%  Similarity=-0.026  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ++-|.|.|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999987764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0037  Score=42.12  Aligned_cols=19  Identities=21%  Similarity=-0.031  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      |+|-|..||||||+++.|.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999998775

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.53  E-value=0.0046  Score=40.72  Aligned_cols=25  Identities=12%  Similarity=0.162  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      ..-|++.|++|+|||++...|+...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3468999999999999998887554

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.45  E-value=0.0041  Score=45.90  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=19.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ..-+++++||+|||||-|..+|.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHH
Confidence            34569999999999999998875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0061  Score=43.94  Aligned_cols=25  Identities=16%  Similarity=-0.061  Sum_probs=20.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ...++=|.|-|++|||||||.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3456788999999999999987764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.43  E-value=0.0044  Score=42.41  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 044772           23 IKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .=++|.|+||+|||+|+.++..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35788899999999999988755

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0044  Score=44.77  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      .++++|++|||||.|+..|.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHH
Confidence            58999999999999998775

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.37  E-value=0.0024  Score=46.25  Aligned_cols=20  Identities=15%  Similarity=0.247  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      .++++|++|+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            58999999999999999885

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0039  Score=42.77  Aligned_cols=22  Identities=23%  Similarity=0.111  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (159)
                      .+|.|--|+|||||+++++...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            5677999999999999999753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0036  Score=42.70  Aligned_cols=22  Identities=18%  Similarity=0.075  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..|+|-|+.||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4588889999999999987764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.32  E-value=0.0049  Score=43.60  Aligned_cols=22  Identities=9%  Similarity=-0.002  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      -|.|.|..|+|||+|+..+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4779999999999999988753

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.27  E-value=0.005  Score=45.43  Aligned_cols=22  Identities=18%  Similarity=-0.032  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-+++.||||+|||+|...+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988763

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0057  Score=41.80  Aligned_cols=23  Identities=17%  Similarity=0.010  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      =++|.|++|+|||+|..+++.+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47888999999999999998543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.0074  Score=40.68  Aligned_cols=24  Identities=8%  Similarity=-0.006  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           22 FIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      .+-|.|.|..||||||+.+.|...
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHC
Confidence            355779999999999999877643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.17  E-value=0.0057  Score=41.47  Aligned_cols=24  Identities=17%  Similarity=-0.110  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNTF   47 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~~   47 (159)
                      =++|.|++|+|||+|+..+..+-.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            367889999999999999985543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0054  Score=45.16  Aligned_cols=18  Identities=11%  Similarity=0.241  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 044772           26 VTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        26 ~vvG~~~~GKSsli~~l~   43 (159)
                      +|+|+.|+|||+|+..+.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0068  Score=41.04  Aligned_cols=19  Identities=16%  Similarity=-0.004  Sum_probs=15.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      |+|-|..||||||++..|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5666999999999776653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.92  E-value=0.018  Score=39.50  Aligned_cols=48  Identities=23%  Similarity=0.214  Sum_probs=35.3

Q ss_pred             cccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCccccc
Q 044772           90 SYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRK  141 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  141 (159)
                      ...+.|.+++|+++.+|+ +...++  +++-....  .++|.+||.||+||.+
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ld--R~Lv~a~~--~~i~pvIvlnK~DL~~   55 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIID--KFLVLAEK--NELETVMVINKMDLYD   55 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHH--HHHHHHHH--TTCEEEEEECCGGGCC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHH--HHHHHHHH--cCCCEEEEEeCcccCC
Confidence            456889999999988764 334444  66555444  3699999999999964

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.81  E-value=0.0087  Score=43.35  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=17.2

Q ss_pred             EEEE-EcCCCCCHHHHHHHHhc
Q 044772           24 KCVT-VRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~v-vG~~~~GKSsli~~l~~   44 (159)
                      .+++ .|+||+|||.|.+.+..
T Consensus       124 g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            4444 69999999999998864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0085  Score=40.92  Aligned_cols=22  Identities=23%  Similarity=0.147  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .-|+|=|.-||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3577889999999999998864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.79  E-value=0.026  Score=38.86  Aligned_cols=50  Identities=20%  Similarity=0.282  Sum_probs=36.0

Q ss_pred             ccccCCcEEEEEEeCCChh-hHHhhhhhhHHHHHhhhCCCCCEEEEeeCcccccC
Q 044772           89 LSYRGADVFILAFSLISRP-SYENISKKKWVPELRHYAPSVPIVLVGTKLDLRKD  142 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  142 (159)
                      ....+.|.+++|+++.+|. ++..++  +++-....  .+++.+||.||+||..+
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~id--R~Lv~a~~--~~i~pvIvlnK~DL~~~   56 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLD--RFLVLVEA--NDIQPIICITKMDLIED   56 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHH--HHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHH--HHHHHHHH--cCCCEEEEEeccccccc
Confidence            3456899999999998764 344444  55554443  46899999999999753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.72  E-value=0.0091  Score=40.19  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 044772           23 IKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~   43 (159)
                      .-++|.|++|+|||+|+..+.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            347788999999999987764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.69  E-value=0.0095  Score=40.46  Aligned_cols=21  Identities=24%  Similarity=0.164  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      +.+.|++|+|||-|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.011  Score=39.90  Aligned_cols=20  Identities=10%  Similarity=0.159  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      +++.|++|+|||+++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999987654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.55  E-value=0.018  Score=38.53  Aligned_cols=22  Identities=18%  Similarity=0.046  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 044772           23 IKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +-|.|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5578999999999999987753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.011  Score=40.65  Aligned_cols=19  Identities=21%  Similarity=0.179  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      +++.|++|+|||+++..+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7888999999999988765

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.53  E-value=0.01  Score=44.27  Aligned_cols=82  Identities=12%  Similarity=0.036  Sum_probs=41.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 044772           25 CVTVRDGAVGKTCLLISYTGNTFPT-DYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL  103 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  103 (159)
                      |+|.|+.||||||.++.++..-... ...-|.|+-.  +..+++.. ++++-. .....|....+..++..--+|++=.+
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPi--E~~~~~~~-q~~v~~-~~~~~~~~~l~~~lR~dPDvi~igEi  236 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI--EFDIDGIG-QTQVNP-RVDMTFARGLRAILRQDPDVVMVGEI  236 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC--CSCCSSSE-EEECBG-GGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred             EEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCc--ccccCCCC-eeeecC-CcCCCHHHHHHHHHhhcCCEEEecCc
Confidence            8899999999999999988532111 1112222211  11122221 222211 11224554555555544445555666


Q ss_pred             CChhhHH
Q 044772          104 ISRPSYE  110 (159)
Q Consensus       104 ~~~~s~~  110 (159)
                      .|+++..
T Consensus       237 Rd~~ta~  243 (401)
T d1p9ra_         237 RDLETAQ  243 (401)
T ss_dssp             CSHHHHH
T ss_pred             CChHHHH
Confidence            6665543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.48  E-value=0.016  Score=42.18  Aligned_cols=25  Identities=8%  Similarity=-0.015  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ...++|.|=|.-|+||||+++.|..
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CceEEEEEECCccCCHHHHHHHHHH
Confidence            3568999999999999999998874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.38  E-value=0.013  Score=40.91  Aligned_cols=20  Identities=10%  Similarity=0.165  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 044772           25 CVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~   44 (159)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999877753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.32  E-value=0.013  Score=42.68  Aligned_cols=26  Identities=12%  Similarity=0.083  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ...++|.|=|+-|+||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999998753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.30  E-value=0.015  Score=42.24  Aligned_cols=23  Identities=13%  Similarity=0.107  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ..++|.|=|+-|+||||+++.|.
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHT
T ss_pred             CceEEEEECCcCCCHHHHHHHHH
Confidence            45789999999999999999885

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.11  E-value=0.023  Score=40.37  Aligned_cols=23  Identities=13%  Similarity=-0.052  Sum_probs=18.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHH
Q 044772           20 TKFIKCVTVRDGAVGKTCLLISY   42 (159)
Q Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l   42 (159)
                      ..++=|.|-|.+|||||||...+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHH
Confidence            34567788899999999988755

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.015  Score=40.39  Aligned_cols=19  Identities=26%  Similarity=0.410  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      .+|.|++|+|||+|+..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6689999999999997765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.06  E-value=0.0069  Score=43.22  Aligned_cols=20  Identities=5%  Similarity=0.137  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      =|.|.|.+||||||+.+.|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            38899999999999998763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.015  Score=39.33  Aligned_cols=19  Identities=16%  Similarity=-0.087  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 044772           25 CVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~   43 (159)
                      |++-|..||||||+++.|.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7788999999999988775

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.015  Score=41.47  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      |++++|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999888753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.016  Score=43.05  Aligned_cols=27  Identities=15%  Similarity=0.080  Sum_probs=21.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      ......++|+|.+|+|||+++..++.+
T Consensus        47 ~~~~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          47 DAEPRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGGGGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcccceEEEEeCCCCcHHHHHHHHHHH
Confidence            344456999999999999998777644

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.78  E-value=0.013  Score=41.22  Aligned_cols=15  Identities=27%  Similarity=0.651  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q 044772           25 CVTVRDGAVGKTCLL   39 (159)
Q Consensus        25 i~vvG~~~~GKSsli   39 (159)
                      ++|+|.+|+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            789999999999764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.67  E-value=0.015  Score=39.22  Aligned_cols=24  Identities=21%  Similarity=0.123  Sum_probs=19.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +.--+++.|+++.|||.|+..|+.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            334588899999999999987763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.44  E-value=0.017  Score=40.90  Aligned_cols=15  Identities=27%  Similarity=0.372  Sum_probs=13.5

Q ss_pred             EEEEcCCCCCHHHHH
Q 044772           25 CVTVRDGAVGKTCLL   39 (159)
Q Consensus        25 i~vvG~~~~GKSsli   39 (159)
                      ++|.|.+|+|||+.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            889999999999765

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.23  E-value=0.022  Score=40.93  Aligned_cols=20  Identities=25%  Similarity=0.233  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 044772           24 KCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (159)
                      -++++|++|+|||.+...|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            47888999999999988665

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.44  E-value=0.06  Score=33.14  Aligned_cols=25  Identities=16%  Similarity=0.032  Sum_probs=21.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHh
Q 044772           19 ATKFIKCVTVRDGAVGKTCLLISYT   43 (159)
Q Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~   43 (159)
                      ..+.+.|.+-|.+|+||++|.+.|.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHH
Confidence            3566889999999999999998885

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.03  E-value=0.049  Score=36.94  Aligned_cols=21  Identities=10%  Similarity=-0.198  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      -|.+.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999998854

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.96  E-value=0.04  Score=38.86  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999888754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.89  E-value=0.2  Score=31.54  Aligned_cols=50  Identities=10%  Similarity=0.239  Sum_probs=32.9

Q ss_pred             ccccCCcEEEEEEeCCCh---hhHHhhhh-----hhHHHHHhhhCCCCCEEEEeeCcc
Q 044772           89 LSYRGADVFILAFSLISR---PSYENISK-----KKWVPELRHYAPSVPIVLVGTKLD  138 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~---~s~~~~~~-----~~~~~~i~~~~~~~piilv~nK~D  138 (159)
                      ..++++|++|+.--....   +....+..     ..+.+.+.+++++.-++++.|=+|
T Consensus        64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD  121 (144)
T d1mlda1          64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN  121 (144)
T ss_dssp             HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHH
T ss_pred             HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence            346789999887543211   11111110     267888888888888999999998

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.057  Score=37.76  Aligned_cols=22  Identities=18%  Similarity=0.122  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      =+.+.|++++|||+|+.+++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3678899999999999877643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.55  E-value=0.059  Score=39.38  Aligned_cols=18  Identities=22%  Similarity=0.176  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCHHHHHHH
Q 044772           24 KCVTVRDGAVGKTCLLIS   41 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~   41 (159)
                      -++|.|++|+|||+++.+
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            477789999999998754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.52  E-value=0.059  Score=37.75  Aligned_cols=24  Identities=17%  Similarity=0.014  Sum_probs=19.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      +.--+++.|+++.|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            334578889999999999988763

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.27  E-value=0.055  Score=35.67  Aligned_cols=21  Identities=14%  Similarity=0.181  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 044772           25 CVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l~~~   45 (159)
                      ++|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            589999999999999998754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.70  E-value=0.088  Score=36.27  Aligned_cols=72  Identities=11%  Similarity=0.116  Sum_probs=37.5

Q ss_pred             EEEEEEeCCCccccccc-ccccccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhC--CCCC-EEEEeeCcccccCcc
Q 044772           70 VNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSLISRPSYENISKKKWVPELRHYA--PSVP-IVLVGTKLDLRKDRQ  144 (159)
Q Consensus        70 ~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~--~~~p-iilv~nK~Dl~~~r~  144 (159)
                      +.+.+.|+++.-..... .......++.++++.+. +..++..+.  ..+..+....  .+.+ .-+|.|+.+....+.
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~--~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~  191 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAAN--NISKGIQKYAKSGGVRLGGIICNSRKVANEYE  191 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHH--HHHHHHHHHBTTBBCEEEEEEEECCSSSCCHH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHH--HHHHHHHhhccccceeccceEEeeecCCCccc
Confidence            45677777653221111 11122346777777765 355666554  4444443322  2333 347889988766543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.36  E-value=0.23  Score=32.30  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=58.9

Q ss_pred             cceeeEEEEEcC-CCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc--------------
Q 044772           19 ATKFIKCVTVRD-GAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY--------------   83 (159)
Q Consensus        19 ~~~~~ki~vvG~-~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------------   83 (159)
                      ..+.+||+|+|. .++|-+ |+.+|..+..-..                ...+.+.++|.+.....              
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ----------------DQPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             cCCCcEEEEECCCcHHHHH-HHHHHHcCcccCC----------------CceEEEEEecCccccchhcchhhhhcccccc
Confidence            346789999997 667755 5556665543221                12244667776542110              


Q ss_pred             -------cccccccccCCcEEEEEEeCCChhh---HHhhhh-----hhHHHHHhhhCC-CCCEEEEeeCccc
Q 044772           84 -------NRLRPLSYRGADVFILAFSLISRPS---YENISK-----KKWVPELRHYAP-SVPIVLVGTKLDL  139 (159)
Q Consensus        84 -------~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~-----~~~~~~i~~~~~-~~piilv~nK~Dl  139 (159)
                             .......+.++|++|++-.......   .+.+..     ..+.+.+.++.+ +.-+++|+|-+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                   0011233678999998865542221   111110     156677777765 6668888998884

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.71  E-value=0.13  Score=32.64  Aligned_cols=102  Identities=19%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             eeeEEEEEcC-CCCCHHHHHHHHhcCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----------------
Q 044772           21 KFIKCVTVRD-GAVGKTCLLISYTGNTFPTDYVPTVFDNFSANVMVDGRTVNLGLWDTAGQEDY----------------   83 (159)
Q Consensus        21 ~~~ki~vvG~-~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------------   83 (159)
                      ++.||+|+|. .++|.+... .|..+.....                +....+.++|.......                
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~~~~~----------------~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~   64 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGSVFGK----------------DQPIILVLLDITPMMGVLDGVLMELQDCALPLL   64 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHHhcCC----------------CCccEEEEecCccchhhhhhhhhhhcccccccc
Confidence            5689999996 779988654 4554332211                11234667776542110                


Q ss_pred             cc-----cccccccCCcEEEEEEeCCChh------hHHh-hhh-hhHHHHHhhhCCCCC-EEEEeeCccc
Q 044772           84 NR-----LRPLSYRGADVFILAFSLISRP------SYEN-ISK-KKWVPELRHYAPSVP-IVLVGTKLDL  139 (159)
Q Consensus        84 ~~-----~~~~~~~~~~~~i~v~d~~~~~------s~~~-~~~-~~~~~~i~~~~~~~p-iilv~nK~Dl  139 (159)
                      ..     .....++++|++|+.=......      -+.. ... ..+.+.+.++.++.. ++++.|-+|.
T Consensus        65 ~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          65 KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             EEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence            00     0123467788888764432211      1111 100 155667777766554 5677898884

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.49  E-value=0.11  Score=35.67  Aligned_cols=21  Identities=14%  Similarity=0.165  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      .|+|.|++|+||+.+...+..
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            489999999999998887753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=0.13  Score=35.17  Aligned_cols=18  Identities=11%  Similarity=0.099  Sum_probs=16.0

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 044772           25 CVTVRDGAVGKTCLLISY   42 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l   42 (159)
                      +++.|++.+|||++++.+
T Consensus        44 ~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHH
Confidence            678899999999999765

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.73  E-value=0.14  Score=32.12  Aligned_cols=17  Identities=18%  Similarity=0.047  Sum_probs=13.1

Q ss_pred             EEEcCCCCCHHHH-HHHH
Q 044772           26 VTVRDGAVGKTCL-LISY   42 (159)
Q Consensus        26 ~vvG~~~~GKSsl-i~~l   42 (159)
                      +++|+-.|||||- ++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            4679999999994 4443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.52  E-value=0.11  Score=36.80  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7999999999999998777643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.32  E-value=0.16  Score=34.50  Aligned_cols=18  Identities=17%  Similarity=0.224  Sum_probs=16.1

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 044772           25 CVTVRDGAVGKTCLLISY   42 (159)
Q Consensus        25 i~vvG~~~~GKSsli~~l   42 (159)
                      +++.|++.+|||+++..+
T Consensus        38 ~iiTGpN~~GKSt~lk~i   55 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQT   55 (224)
T ss_dssp             EEEESCSSSSHHHHHHHH
T ss_pred             EEEECCCccccchhhhhh
Confidence            688899999999998765

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.27  E-value=0.33  Score=30.52  Aligned_cols=50  Identities=8%  Similarity=0.149  Sum_probs=30.2

Q ss_pred             cccCCcEEEEEEeCCCh---hhHHhhh-----hhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           90 SYRGADVFILAFSLISR---PSYENIS-----KKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~---~s~~~~~-----~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      .+.++|+++++......   +.+..+.     ...+.+.+.++.++.-++++.|=+|.
T Consensus        69 ~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv  126 (146)
T d1ez4a1          69 DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDI  126 (146)
T ss_dssp             GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH
T ss_pred             HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHH
Confidence            46789988887543221   1221111     02677788888888878888887775

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=0.11  Score=37.25  Aligned_cols=14  Identities=36%  Similarity=0.261  Sum_probs=12.8

Q ss_pred             EEEcCCCCCHHHHH
Q 044772           26 VTVRDGAVGKTCLL   39 (159)
Q Consensus        26 ~vvG~~~~GKSsli   39 (159)
                      +++|.+|.|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999974

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.17  Score=35.01  Aligned_cols=18  Identities=28%  Similarity=0.255  Sum_probs=14.2

Q ss_pred             eEEEEEcCCCCCHHHHHH
Q 044772           23 IKCVTVRDGAVGKTCLLI   40 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~   40 (159)
                      .-|++.|..||||||+.-
T Consensus         9 ~~i~~sGKGGVGKTTvaa   26 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISC   26 (296)
T ss_dssp             SEEEEECSTTSSHHHHHH
T ss_pred             eEEEEECCCcChHHHHHH
Confidence            345678999999999654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.49  E-value=0.22  Score=30.40  Aligned_cols=21  Identities=10%  Similarity=-0.061  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ..+|.++.|+|||.++-.++.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            457789999999998866553

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.47  E-value=0.18  Score=34.64  Aligned_cols=19  Identities=26%  Similarity=0.321  Sum_probs=14.1

Q ss_pred             eeEEEEE-cCCCCCHHHHHH
Q 044772           22 FIKCVTV-RDGAVGKTCLLI   40 (159)
Q Consensus        22 ~~ki~vv-G~~~~GKSsli~   40 (159)
                      ..+|+++ |..||||||+.-
T Consensus        19 ~~~iii~sGKGGVGKTT~a~   38 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAA   38 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHH
Confidence            3455555 999999999754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.29  E-value=0.12  Score=37.03  Aligned_cols=15  Identities=33%  Similarity=0.255  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q 044772           25 CVTVRDGAVGKTCLL   39 (159)
Q Consensus        25 i~vvG~~~~GKSsli   39 (159)
                      -+++|.+|.|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999973

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.27  E-value=0.15  Score=35.82  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGNT   46 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (159)
                      |+.++|.+|+|||+|+..+..+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            79999999999999987765443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.21  E-value=0.2  Score=34.96  Aligned_cols=21  Identities=14%  Similarity=0.074  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 044772           24 KCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (159)
                      =+.+.|++++|||+|+..+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            367789999999999877764

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.04  E-value=0.14  Score=36.77  Aligned_cols=15  Identities=33%  Similarity=0.233  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q 044772           25 CVTVRDGAVGKTCLL   39 (159)
Q Consensus        25 i~vvG~~~~GKSsli   39 (159)
                      -+++|.+|.|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            469999999999985

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.89  E-value=0.78  Score=28.83  Aligned_cols=52  Identities=19%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             cccccCCcEEEEEEeCCChh--------hHHhhhh-----hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           88 PLSYRGADVFILAFSLISRP--------SYENISK-----KKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        88 ~~~~~~~~~~i~v~d~~~~~--------s~~~~~~-----~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      ...+.++|.++++.-.....        .+..+..     ..+.+.+.+++++.-++++.|=+|.
T Consensus        66 ~~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~  130 (150)
T d1t2da1          66 YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV  130 (150)
T ss_dssp             GGGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHH
T ss_pred             ccccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHH
Confidence            34578899999887754321        2211110     2778888888888888888888885

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.81  E-value=0.22  Score=34.62  Aligned_cols=18  Identities=22%  Similarity=0.464  Sum_probs=14.8

Q ss_pred             eEEEEEcCCCCCHHHHHH
Q 044772           23 IKCVTVRDGAVGKTCLLI   40 (159)
Q Consensus        23 ~ki~vvG~~~~GKSsli~   40 (159)
                      .+|++-|..||||||+.-
T Consensus         3 r~IaisgKGGVGKTT~a~   20 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQ   20 (289)
T ss_dssp             EEEEEEECTTSSHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHH
Confidence            367778999999999754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=86.64  E-value=0.68  Score=28.68  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             ccccCCcEEEEEEeCCCh---hhHHhhhh-----hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           89 LSYRGADVFILAFSLISR---PSYENISK-----KKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~---~s~~~~~~-----~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      ..+.++|.++++.-....   .....+..     ..+.+.+.+++++.-++++.|=+|.
T Consensus        65 ~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~  123 (142)
T d1guza1          65 ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDI  123 (142)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHH
T ss_pred             HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHH
Confidence            346789988887543211   12211111     2667788888877777888887774

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.59  E-value=0.45  Score=29.57  Aligned_cols=50  Identities=22%  Similarity=0.468  Sum_probs=31.9

Q ss_pred             cccCCcEEEEEEeCCCh---hhHHhhhh-----hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           90 SYRGADVFILAFSLISR---PSYENISK-----KKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~---~s~~~~~~-----~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      .++++|.+|++--....   .....+..     ..+.+.+.+++++.-++++.|=+|.
T Consensus        64 ~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~  121 (140)
T d1a5za1          64 DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDV  121 (140)
T ss_dssp             GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred             HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHH
Confidence            47889998887543221   11111110     2677888888888878888887775

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.48  E-value=0.25  Score=32.27  Aligned_cols=20  Identities=20%  Similarity=0.197  Sum_probs=16.1

Q ss_pred             eEEEEEcCC-CCCHHHHHHHH
Q 044772           23 IKCVTVRDG-AVGKTCLLISY   42 (159)
Q Consensus        23 ~ki~vvG~~-~~GKSsli~~l   42 (159)
                      .|+.|.|-. |||||++.--|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            478999985 99999986544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.03  E-value=0.24  Score=34.51  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 044772           24 KCVTVRDGAVGKTCLLISYTGN   45 (159)
Q Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (159)
                      =+.+.|++++|||+|+..+...
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            3667899999999999887643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=85.89  E-value=1.3  Score=28.13  Aligned_cols=50  Identities=14%  Similarity=0.392  Sum_probs=32.4

Q ss_pred             cccCCcEEEEEEeCCCh---hhHHhhhh-----hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           90 SYRGADVFILAFSLISR---PSYENISK-----KKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~---~s~~~~~~-----~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      .+.++|++|+.......   +....+..     ..+.+.+.++.++.-+++|.|=+|.
T Consensus        85 ~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv  142 (160)
T d1i0za1          85 VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDI  142 (160)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred             hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHH
Confidence            36789988887654322   12211111     2667788888887778999888885

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.79  E-value=0.84  Score=28.51  Aligned_cols=51  Identities=12%  Similarity=0.167  Sum_probs=32.2

Q ss_pred             ccccCCcEEEEEEeCCCh---hhHHhhhh-----hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           89 LSYRGADVFILAFSLISR---PSYENISK-----KKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~---~s~~~~~~-----~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      ..+.++|.+|+..-....   ...+.+..     ..+.+.+.++.++.-+++|.|=+|.
T Consensus        70 ~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~  128 (148)
T d1ldna1          70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDI  128 (148)
T ss_dssp             GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHH
T ss_pred             HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHH
Confidence            446789999887544321   11111111     2567788888888878888888774

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.51  E-value=0.48  Score=29.83  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             ccccCCcEEEEEEeCCChh---hHHhhhh-----hhHHHHHhhhCC-CCCEEEEeeCccc
Q 044772           89 LSYRGADVFILAFSLISRP---SYENISK-----KKWVPELRHYAP-SVPIVLVGTKLDL  139 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~~~---s~~~~~~-----~~~~~~i~~~~~-~~piilv~nK~Dl  139 (159)
                      ..++++|.+|+.-......   .++.+..     ..+.+.+.++.+ +.-++++.|-+|.
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            3578899999987654221   1111110     266777777764 5667778998884

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.16  E-value=0.35  Score=31.95  Aligned_cols=24  Identities=4%  Similarity=-0.111  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 044772           21 KFIKCVTVRDGAVGKTCLLISYTG   44 (159)
Q Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~   44 (159)
                      ....+++-|++|+||+++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999987764

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.40  E-value=0.39  Score=31.08  Aligned_cols=15  Identities=33%  Similarity=0.640  Sum_probs=13.1

Q ss_pred             EEEEEcCCCCCHHHH
Q 044772           24 KCVTVRDGAVGKTCL   38 (159)
Q Consensus        24 ki~vvG~~~~GKSsl   38 (159)
                      +++++++.|+|||.+
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999964

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=82.06  E-value=0.94  Score=28.29  Aligned_cols=51  Identities=16%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             ccccCCcEEEEEEeCCC-------hhhHHhhh-----hhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           89 LSYRGADVFILAFSLIS-------RPSYENIS-----KKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        89 ~~~~~~~~~i~v~d~~~-------~~s~~~~~-----~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      ..++++|.+|++--...       .+....+.     ...+.+.+.+++++.-++++.|=+|.
T Consensus        65 ~~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~  127 (146)
T d1hyha1          65 AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDV  127 (146)
T ss_dssp             GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH
T ss_pred             HHhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHH
Confidence            34678999988744321       01111111     02667777888887778888888874

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=81.61  E-value=1.5  Score=27.17  Aligned_cols=50  Identities=12%  Similarity=0.170  Sum_probs=31.2

Q ss_pred             cccCCcEEEEEEeCCCh---hhHHhhhh-----hhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           90 SYRGADVFILAFSLISR---PSYENISK-----KKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        90 ~~~~~~~~i~v~d~~~~---~s~~~~~~-----~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      .+.++|++|+.--....   +..+.+..     ..+.+.+.++.++.-++++.|=+|.
T Consensus        67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDv  124 (142)
T d1o6za1          67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL  124 (142)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHH
T ss_pred             HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHH
Confidence            36789999887553321   12222111     2667777787877777888888874

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.97  E-value=0.55  Score=28.93  Aligned_cols=41  Identities=7%  Similarity=0.157  Sum_probs=25.1

Q ss_pred             ccCCcEEEEEEeCCChhhHHhhhhhhHHHHHhhhCCCCCEEEEeeCccc
Q 044772           91 YRGADVFILAFSLISRPSYENISKKKWVPELRHYAPSVPIVLVGTKLDL  139 (159)
Q Consensus        91 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  139 (159)
                      +.+.+.+++    +..+-|.++.  .+...+..  .++++++.|-..|=
T Consensus        71 ~~~~d~I~I----DEaQFf~dl~--~~~~~~~~--~~~~Viv~GLd~Df  111 (133)
T d1xbta1          71 ALGVAVIGI----DEGQFFPDIV--EFCEAMAN--AGKTVIVAALDGTF  111 (133)
T ss_dssp             HHTCSEEEE----SSGGGCTTHH--HHHHHHHH--TTCEEEEECCSBCT
T ss_pred             hcccceEEe----ehhHHHHHHH--HHHHHHHh--cCCcEEEEEecccc
Confidence            445664433    4445555554  55555544  36889999988884

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.56  E-value=0.27  Score=29.54  Aligned_cols=16  Identities=25%  Similarity=0.052  Sum_probs=13.0

Q ss_pred             eeEEEEEcCCCCCHHH
Q 044772           22 FIKCVTVRDGAVGKTC   37 (159)
Q Consensus        22 ~~ki~vvG~~~~GKSs   37 (159)
                      .-++++.+++|+|||.
T Consensus         7 ~~~~il~~~tGsGKT~   22 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTR   22 (140)
T ss_dssp             TCEEEECCCTTSSTTT
T ss_pred             CCcEEEEcCCCCChhH
Confidence            3467888999999993