Citrus Sinensis ID: 044778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40-------
Protein Sequence
MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcHHHHHHHHcc
Coil and Loop (DISEMBL)
MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL
Flexible Loop (DISEMBL)
MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL
Low Complexity Region (SEG)
MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL
Disordered region (IsUnstruct)
*******************QAVLKHLLHLGIENIAVHEAEI******
Disordered Region (DISOPRED)
***************AK**QAVLKHLLHLGIENIAVHEAEIEC****
Disordered Region (DISEMBL)
*******************QAVLKHLLHLGIENIAVHEAEIECHQQL
Disordered Region (DISPRO)
MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxVLKHLLHLGIENIAVHEAEIECHQQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	47
255557725	368	clathrin binding protein, putative [Rici	1.0	0.127	0.744	1e-09
224139142	370	predicted protein [Populus trichocarpa]	1.0	0.127	0.702	2e-08
449527213	384	PREDICTED: uncharacterized protein LOC10	1.0	0.122	0.659	3e-08
224074583	371	predicted protein [Populus trichocarpa]	1.0	0.126	0.680	3e-08
449455669	382	PREDICTED: uncharacterized protein LOC10	1.0	0.123	0.659	3e-08
297846528	439	SH3 domain-containing protein 1 [Arabido	1.0	0.107	0.638	1e-07
15221714	439	SH3 domain-containing protein [Arabidops	1.0	0.107	0.638	2e-07
225427560	371	PREDICTED: uncharacterized protein LOC10	0.851	0.107	0.725	1e-06
147822062	875	hypothetical protein VITISV_021806 [Viti	1.0	0.053	0.659	1e-06
356531527	362	PREDICTED: uncharacterized protein LOC10	1.0	0.129	0.574	2e-06

>gi|255557725|ref|XP_002519892.1| clathrin binding protein, putative [Ricinus communis] gi|223540938|gb|EEF42496.1| clathrin binding protein, putative [Ricinus communis]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 38/47 (80%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          MEAIKKQA K REQVAKQQQAVLKHL H G E + V EAE +C+QQL
Sbjct: 1  MEAIKKQAAKLREQVAKQQQAVLKHLGHFGNEAVIVDEAEFQCYQQL 47

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139142|ref|XP_002326778.1| predicted protein [Populus trichocarpa] gi|222834100|gb|EEE72577.1| predicted protein [Populus trichocarpa]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 37/47 (78%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          MEAIKKQA + REQVAKQQQAVLKHL H   E I V EAE++C+Q L
Sbjct: 1  MEAIKKQATRLREQVAKQQQAVLKHLGHFSNEGIIVDEAELQCYQHL 47

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527213|ref|XP_004170607.1| PREDICTED: uncharacterized protein LOC101231286 [Cucumis sativus]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 36/47 (76%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          MEAI+KQA K REQVAKQQQA++  L H G E +   EAEI+CHQQL
Sbjct: 1  MEAIRKQASKFREQVAKQQQALMIKLGHFGTEPLLADEAEIQCHQQL 47

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074583|ref|XP_002304394.1| predicted protein [Populus trichocarpa] gi|222841826|gb|EEE79373.1| predicted protein [Populus trichocarpa]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 37/47 (78%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          MEA KKQA + REQVAKQQQA+LKHL HL  E I V EAE++C+Q L
Sbjct: 1  MEAFKKQATRLREQVAKQQQAILKHLGHLSNEGIIVDEAELQCYQHL 47

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455669|ref|XP_004145574.1| PREDICTED: uncharacterized protein LOC101211108 [Cucumis sativus]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 36/47 (76%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          MEAI+KQA K REQVAKQQQA++  L H G E +   EAEI+CHQQL
Sbjct: 1  MEAIRKQASKFREQVAKQQQALMIKLGHFGTEPLLADEAEIQCHQQL 47

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846528|ref|XP_002891145.1| SH3 domain-containing protein 1 [Arabidopsis lyrata subsp. lyrata] gi|297336987|gb|EFH67404.1| SH3 domain-containing protein 1 [Arabidopsis lyrata subsp. lyrata]

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          MEAI+KQA K REQVA+QQQAVLKHL H+  + + V E E+ CHQ+L
Sbjct: 1  MEAIRKQAAKLREQVARQQQAVLKHLGHVNADAVVVDEEELHCHQKL 47

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221714|ref|NP_174429.1| SH3 domain-containing protein [Arabidopsis thaliana] gi|12322535|gb|AAG51264.1|AC027135_5 unknown protein [Arabidopsis thaliana] gi|16974676|gb|AAL32438.1|AF367773_1 SH3 domain-containing protein 1 [Arabidopsis thaliana] gi|19424043|gb|AAL87310.1| unknown protein [Arabidopsis thaliana] gi|21281229|gb|AAM45032.1| unknown protein [Arabidopsis thaliana] gi|332193235|gb|AEE31356.1| SH3 domain-containing protein [Arabidopsis thaliana]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          MEAI+KQA K REQVA+QQQAVLKHL H+  + + V E E+ CHQ+L
Sbjct: 1  MEAIRKQAAKLREQVARQQQAVLKHLGHVNADAVVVDEEELHCHQKL 47

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427560|ref|XP_002267588.1| PREDICTED: uncharacterized protein LOC100249391 isoform 1 [Vitis vinifera] gi|296085501|emb|CBI29233.3| unnamed protein product [Vitis vinifera]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 32/40 (80%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAE 40
          MEAI+KQA K REQVA+QQQAVLK L H GIE + V EAE
Sbjct: 1  MEAIRKQASKLREQVARQQQAVLKQLGHFGIETVVVDEAE 40

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822062|emb|CAN68081.1| hypothetical protein VITISV_021806 [Vitis vinifera]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 34/47 (72%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          MEAI+KQA K REQVA+QQQAVLK L H GIE + V EAE    Q L
Sbjct: 1  MEAIRKQASKLREQVARQQQAVLKQLGHFGIETVVVDEAEQRQLQNL 47

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531527|ref|XP_003534329.1| PREDICTED: uncharacterized protein LOC100819767 [Glycine max]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 1  MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
          M+AI+KQA K REQVA+QQQ +L+ L  +  E + + E+EIECHQQL
Sbjct: 1  MDAIRKQASKLREQVARQQQVILRQLGQISNEPLMIDESEIECHQQL 47

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	47
TAIR|locus:2206174	439	AT1G31440 [Arabidopsis thalian	1.0	0.107	0.638	4e-10
TAIR|locus:2139554	368	AT4G34660 "AT4G34660" [Arabido	1.0	0.127	0.510	0.00013
TAIR|locus:2117666	351	AT4G18060 "AT4G18060" [Arabido	1.0	0.133	0.44	0.00054

TAIR|locus:2206174 AT1G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query:     1 MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
             MEAI+KQA K REQVA+QQQAVLKHL H+  + + V E E+ CHQ+L
Sbjct:     1 MEAIRKQAAKLREQVARQQQAVLKHLGHVNADAVVVDEEELHCHQKL 47

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2139554 AT4G34660 "AT4G34660" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query:     1 MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIENIAVHEAEIECHQQL 47
             M+AI+KQA + REQVA+QQQAV K     G  +    EAE+  HQ+L
Sbjct:     1 MDAIRKQASRLREQVARQQQAVFKQFGGGGYGSGLADEAELNQHQKL 47

GO:0008150 "biological_process" evidence=ND

GO:0030276 "clathrin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2117666 AT4G18060 "AT4G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query:     1 MEAIKKQAIKHREQVAKQQQAVLKHLLHLGIEN---IAVHEAEIECHQQL 47
             M+A ++QA K R+QVAKQQ AV+K     G E+   + + E E++ H QL
Sbjct:     1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQL 50


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.129   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       47        47   0.00091  102 3  10 22  0.41    26
                                                     29  0.47    25


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  407 (43 KB)
  Total size of DFA:  83 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.42u 0.11s 9.53t   Elapsed:  00:00:01
  Total cpu time:  9.42u 0.11s 9.53t   Elapsed:  00:00:01
  Start:  Fri May 10 09:33:08 2013   End:  Fri May 10 09:33:09 2013

GO:0030276 "clathrin binding" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00