Citrus Sinensis ID: 044799

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
ILEGGRRPDLNRGIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSYSSLTK
cccccccccccccccccccccccccccccHHHHHHcHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHccccccHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHccccccc
cccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHccHHHEccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccc
ileggrrpdlnrgigianlstsigpgtygknallaqpdydivllgkteggSLFLQKmlsgkdstiTYKIFEAVYkypfdlmtdgygchLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLnnfinemrgprrgGLLDLISSHaeflskdpsgnyvVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHlvekyqrpsiftpcqhkygnFVIQQALRVTKGFQMTERNIIQELgqssfiqgivpFNFHVVSYSSLTK
ileggrrpdlnrgigianlstsigPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEflskdpsgnYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSYSSLTK
ILEGGRRPDLNRGIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSYSSLTK
************GIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSY*****
*******************************ALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSYSSLT*
ILEGGRRPDLNRGIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSYSSLTK
*LEGGRRPDLNRGIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSYSSL**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ILEGGRRPDLNRGIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSYSSLTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query304 2.2.26 [Sep-21-2011]
Q9LM20515 Putative pumilio homolog yes no 0.720 0.425 0.327 4e-22
Q9LVC3596 Pumilio homolog 12 OS=Ara no no 0.842 0.429 0.275 7e-21
Q9LVG3327 Pumilio homolog 18 OS=Ara no no 0.855 0.795 0.293 7e-20
Q9C9R6650 Putative pumilio homolog no no 0.75 0.350 0.282 4e-19
Q9LSS8327 Putative pumilio homolog no no 0.723 0.672 0.307 6e-19
Q9LXC5517 Putative pumilio homolog no no 0.697 0.410 0.305 2e-18
Q1PFN9564 Pumilio homolog 9 OS=Arab no no 0.825 0.445 0.302 2e-17
Q9FIE9332 Putative pumilio homolog no no 0.578 0.530 0.299 2e-15
Q9C8B8332 Putative pumilio homolog no no 0.490 0.448 0.355 3e-15
Q9XI17332 Putative pumilio homolog no no 0.644 0.590 0.273 5e-15
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana GN=APUM8 PE=3 SV=2 Back     alignment and function desciption
 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 113/235 (48%), Gaps = 16/235 (6%)

Query: 50  GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
           G+  +QK+L   +     +I   V   P  L+      +  R +Q+L++ +     ISLV
Sbjct: 248 GNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLV 307

Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
            SA    F +++     + VI +CL+ L  + NE ++  A     ++ATH  GC  L   
Sbjct: 308 KSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKC 367

Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
           I    G +R  L+  IS ++ FL++DP GNY VQ VL L D      + + LKG + ELS
Sbjct: 368 IAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELS 427

Query: 230 LLRCGSHLVEK------YQRPSIFTP----------CQHKYGNFVIQQALRVTKG 268
           + +  SH+VE+        RP I              Q  Y NFVIQ AL VTKG
Sbjct: 428 MQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILIQDPYANFVIQAALAVTKG 482
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2 Back     alignment and function description
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 SV=2 Back     alignment and function description
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3 SV=2 Back     alignment and function description
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3 SV=1 Back     alignment and function description
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3 SV=2 Back     alignment and function description
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5 SV=2 Back     alignment and function description
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
147798084 507 hypothetical protein VITISV_039435 [Viti 0.746 0.447 0.352 3e-31
255553119 471 RNA binding protein, putative [Ricinus c 0.792 0.511 0.332 7e-31
255544718 483 conserved hypothetical protein [Ricinus 0.759 0.478 0.325 1e-30
224117628 502 predicted protein [Populus trichocarpa] 0.782 0.474 0.298 8e-25
224056741 497 predicted protein [Populus trichocarpa] 0.601 0.368 0.338 9e-23
356551678 622 PREDICTED: putative pumilio homolog 7, c 0.756 0.369 0.304 8e-21
297793565328 APUM18 [Arabidopsis lyrata subsp. lyrata 0.779 0.722 0.306 8e-21
297790088328 APUM18 [Arabidopsis lyrata subsp. lyrata 0.779 0.722 0.306 9e-21
9454526 514 Contains similarity to RNA binding prote 0.720 0.426 0.327 2e-20
15219849 515 protein pumilio 8 [Arabidopsis thaliana] 0.720 0.425 0.327 3e-20
>gi|147798084|emb|CAN67257.1| hypothetical protein VITISV_039435 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 14/241 (5%)

Query: 41  IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLL 100
           IV L     G     ++    D+    +I   +   P  ++   +    ++S+Q+LI++L
Sbjct: 227 IVTLAVHPSGCNVFIRLTEACDANQLSQILSKLILPPSTIIRVSHDPIGSKSIQRLIQVL 286

Query: 101 VGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHV 160
             SP +  V++A    F ++M  ++ + VI +CL  L  ++NE LY AA+     LATH 
Sbjct: 287 RRSPLVVPVVTALAAGFYELMKDQQGAMVISRCLALLSSEQNEELYRAAILPCVALATHA 346

Query: 161 RGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSL 220
           +GC++LN+FIN + GP R  LL  I+ +  FLS+DP GN+VVQH+L L    ++ KIC L
Sbjct: 347 KGCIALNSFINNVIGPYRDLLLHKITDNTVFLSQDPRGNFVVQHILELHHPVFTSKICHL 406

Query: 221 LKGKFEELSLLRCGSHLVEKYQRPSIFT------------P--CQHKYGNFVIQQALRVT 266
           L+G +  LS+ + GSH+VEK  +    +            P     ++GN+VIQ ALRVT
Sbjct: 407 LQGYYVRLSVQKSGSHIVEKCLKSHWMSFAVKELTTSGRLPQLAHDQFGNYVIQTALRVT 466

Query: 267 K 267
           K
Sbjct: 467 K 467

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255553119|ref|XP_002517602.1| RNA binding protein, putative [Ricinus communis] gi|223543234|gb|EEF44766.1| RNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255544718|ref|XP_002513420.1| conserved hypothetical protein [Ricinus communis] gi|223547328|gb|EEF48823.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224117628|ref|XP_002317626.1| predicted protein [Populus trichocarpa] gi|222860691|gb|EEE98238.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056741|ref|XP_002299000.1| predicted protein [Populus trichocarpa] gi|222846258|gb|EEE83805.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356551678|ref|XP_003544201.1| PREDICTED: putative pumilio homolog 7, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297793565|ref|XP_002864667.1| APUM18 [Arabidopsis lyrata subsp. lyrata] gi|297310502|gb|EFH40926.1| APUM18 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297790088|ref|XP_002862953.1| APUM18 [Arabidopsis lyrata subsp. lyrata] gi|297308739|gb|EFH39212.1| APUM18 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9454526|gb|AAF87849.1|AC073942_3 Contains similarity to RNA binding protein PufA from Dictyostelium discoideum gi|5106561 and contains multiple Pumilio-family RNA binding PF|00806 domains [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15219849|ref|NP_173643.1| protein pumilio 8 [Arabidopsis thaliana] gi|313471411|sp|Q9LM20.2|PUM8_ARATH RecName: Full=Putative pumilio homolog 8, chloroplastic; Short=APUM-8; Short=AtPUM8; Flags: Precursor gi|332192094|gb|AEE30215.1| protein pumilio 8 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
TAIR|locus:2164165327 PUM18 "pumilio 18" [Arabidopsi 0.710 0.660 0.321 1.3e-23
TAIR|locus:2144010327 PUM19 "pumilio 19" [Arabidopsi 0.621 0.577 0.331 4.7e-22
TAIR|locus:2167111596 PUM12 "pumilio 12" [Arabidopsi 0.625 0.318 0.307 3.8e-21
TAIR|locus:2015036515 PUM8 "pumilio 8" [Arabidopsis 0.720 0.425 0.331 5.9e-21
TAIR|locus:2194699650 PUM7 "pumilio 7" [Arabidopsis 0.720 0.336 0.306 1.8e-17
TAIR|locus:2011349564 PUM9 "pumilio 9" [Arabidopsis 0.825 0.445 0.302 5.2e-17
TAIR|locus:2144711517 PUM21 "pumilio 21" [Arabidopsi 0.733 0.431 0.308 2.1e-16
TAIR|locus:2168529332 PUM16 "pumilio 16" [Arabidopsi 0.490 0.448 0.335 3.1e-15
ASPGD|ASPL0000057098 650 AN10071 [Emericella nidulans ( 0.680 0.318 0.273 2.2e-14
TAIR|locus:2138258556 PUM11 "pumilio 11" [Arabidopsi 0.746 0.408 0.287 7.4e-14
TAIR|locus:2164165 PUM18 "pumilio 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 233 (87.1 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 73/227 (32%), Positives = 114/227 (50%)

Query:    19 LSTSIGPGTYGKNALLAQPDYDIVLLGKTEG-GSLFLQKMLSGKDSTITYKIFEAVYK-- 75
             +S SI P  +   A  A P +  +    T+G G  + ++M+S  D T   ++   +    
Sbjct:    23 ISGSIPPPGFAPRAS-ATPLHAALFNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDS 81

Query:    76 -YPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCL 134
              Y   ++T  +G   +R +QKL+         +   +A  RRF  +   K AS V I+ +
Sbjct:    82 DYFMSIVTTKFG---SRRVQKLLGK--SDDVDAFFCAAILRRFLHITTDKYASYVTIRAM 136

Query:   135 ETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPR-RGGLLDLISSHAEFLS 193
                D+   + LY   + H  +LA    GC++LN+ I +   P  R  LL+L++S+A  LS
Sbjct:   137 VVFDKVMKKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLS 196

Query:   194 KDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
              D SGN+VVQHVL L D +    I   L G+  ELS  + GS++VEK
Sbjct:   197 NDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEK 243
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0007059 "chromosome segregation" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
TAIR|locus:2144010 PUM19 "pumilio 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167111 PUM12 "pumilio 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015036 PUM8 "pumilio 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194699 PUM7 "pumilio 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011349 PUM9 "pumilio 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144711 PUM21 "pumilio 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168529 PUM16 "pumilio 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000057098 AN10071 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2138258 PUM11 "pumilio 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 4e-36
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 2e-17
cd07920 322 cd07920, Pumilio, Pumilio-family RNA binding domai 3e-06
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information 
 Score =  131 bits (332), Expect = 4e-36
 Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 25/242 (10%)

Query: 50  GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
           G+  +QK+          ++ E +  +   L  D YGC   R +QKL++  +    ISL+
Sbjct: 57  GNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGC---RVIQKLLES-ISEEQISLL 112

Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
           +        +++  +  + VI KC+E    +  + +  A   +   L+TH  GC  +   
Sbjct: 113 VKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRC 172

Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
           +      +R  LL+ I  HA  L +D  GNYVVQHVL LGD   + +I   L G   +LS
Sbjct: 173 LEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLS 232

Query: 230 LLRCGSHLVEK---------------------YQRPSIFTPCQHKYGNFVIQQALRVTKG 268
             +  S++VEK                      +  ++ T  + +YGN+VIQ AL V K 
Sbjct: 233 CHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKE 292

Query: 269 FQ 270
            Q
Sbjct: 293 EQ 294

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats. Length = 322
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 304
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
COG5099777 RNA-binding protein of the Puf family, translation 99.97
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.94
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 99.94
KOG2188650 consensus Predicted RNA-binding protein, contains 99.92
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.83
KOG2188650 consensus Predicted RNA-binding protein, contains 99.74
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.53
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.35
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 98.52
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 98.48
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 98.07
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.94
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 91.43
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 81.39
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-55  Score=408.47  Aligned_cols=266  Identities=23%  Similarity=0.320  Sum_probs=233.6

Q ss_pred             cCcccccchhhHhhhccCcchhHHHHhhhcCCCH-HHHHHHHHHHHhcHHHhhcccccchHHHH----------------
Q 044799           30 KNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDS-TITYKIFEAVYKYPFDLMTDGYGCHLARS----------------   92 (304)
Q Consensus        30 ~~~~l~~~~g~i~~la~d~~gsr~lQ~~l~~~~~-e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~----------------   92 (304)
                      .+.-+..+.|+++++++||+|||+||+-++.+++ +++..+|+++.+.+.+||+|.||||||||                
T Consensus       170 ~~l~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~  249 (503)
T KOG1488|consen  170 KTLELVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQ  249 (503)
T ss_pred             ccccccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHHHHH
Confidence            3344455679999999999999999999999988 99999999999999999999999999999                


Q ss_pred             -----------------HHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCchHHHHHHHhhCCcccHHHHHHHHHh--cH
Q 044799           93 -----------------MQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMN--HF  153 (304)
Q Consensus        93 -----------------vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~~l~~--~~  153 (304)
                                       |||.|+....+...+++.+ |.++++.++.|++||||||+|+|+.|++...+|++.+.+  ++
T Consensus       250 ~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~E-Ld~~vl~~v~DQngnHViQK~ie~~p~~~~~Fiv~~f~~~~~~  328 (503)
T KOG1488|consen  250 IKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDE-LDGHLLKCVKDQNGNHVIQKCIETLPPDAWQFIVDFFSGDDNL  328 (503)
T ss_pred             HHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHH-HHhhHHHHHhhcccceehhhhhhccChHHHHHHHHHhcCCCce
Confidence                             9999999876666666655 899999999999999999999999999999999999999  99


Q ss_pred             HHHhhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHhccCCHhhHHHHHHHHHHhHHHhhccch
Q 044799          154 RELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRC  233 (304)
Q Consensus       154 ~~la~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~~~~~~i~~~l~~~~~~Ls~~k~  233 (304)
                      ..+|+|+|||||||++++++++++...++++|..++.+|+.|+|||||||++|++++++.+..|+++|.+++++||.|||
T Consensus       329 ~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq~Kf  408 (503)
T KOG1488|consen  329 LELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQHKF  408 (503)
T ss_pred             eEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             hhHHHHHhhh-------hhhh---------------ccCCCCchhHHHHHHHhhCCccchHHHHHHHHhhcccccccccc
Q 044799          234 GSHLVEKYQR-------PSIF---------------TPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVP  291 (304)
Q Consensus       234 gs~Vvek~l~-------~~Ii---------------l~~~d~~GnyViq~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~  291 (304)
                      +|+|||||+.       .+|+               +++.|+|||||||++++.|++.++++  ++..+..+.-..+..+
T Consensus       409 ASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~--i~~rI~~h~~~Lrk~s  486 (503)
T KOG1488|consen  409 ASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQREL--IKSRVKPHASRLRKFS  486 (503)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHH--HHHHHHHHHHHHccCc
Confidence            9999999999       2333               12299999999999999998876532  1112222222235578


Q ss_pred             ccceEee
Q 044799          292 FNFHVVS  298 (304)
Q Consensus       292 ~~~~i~~  298 (304)
                      |||||+.
T Consensus       487 yGKhIia  493 (503)
T KOG1488|consen  487 YGKHIIA  493 (503)
T ss_pred             cHHHHHH
Confidence            8888864

>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
4dzs_A357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 5e-16
3bwt_A333 Crystal Structure Of The Rna Binding Domain Of Puf4 6e-16
3bx2_A335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 7e-16
3bx3_A335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 1e-15
3q0q_A351 Crystal Structure Of The Pumilio-Homology Domain Fr 5e-10
3gvo_A351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 1e-09
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 3e-09
1ib2_A349 Crystal Structure Of A Pumilio-Homology Domain Leng 4e-08
3bsb_A343 Crystal Structure Of Human Pumilio1 In Complex With 5e-08
2yjy_A350 A Specific And Modular Binding Code For Cytosine Re 6e-07
3k49_A369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 7e-05
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure 
Iteration: 1

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 59/293 (20%)
Query: 31  NALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHL- 89
           +A+L Q    I  L K + G  FLQK L    S     IFE    Y  +LMTD +G +L 
Sbjct: 27  DAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLI 86
Query: 90  --------------------------------ARSMQKLIKLLVGSPCISLVISAAYRRF 117
                                            R++QKLI+ +       +V+ +   R 
Sbjct: 87  QKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSL--RP 144
Query: 118 KDMMFSKE--ASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRG 175
             +  SK+   + VI KCL+ L  +  + ++ A  +   ++ATH  GC  L   ++    
Sbjct: 145 YTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTT 204
Query: 176 PRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLK----YSEKICSLLKGKFEELSLL 231
            +   L D + +  + L+ DP GNYVVQ+++     K    Y+ KI  LLK +  ELS+ 
Sbjct: 205 EQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 264
Query: 232 RCGSHLVEKYQRPSIFTP------------------CQHKYGNFVIQQALRVT 266
           + GS+++EK  + +I +                       YGN+V+Q AL ++
Sbjct: 265 KFGSNVIEKILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDIS 317
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 5e-42
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-38
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-20
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 5e-14
3gvo_A 351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 2e-11
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 6e-36
3k49_A 369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 4e-10
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 6e-10
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 4e-31
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 4e-15
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 2e-08
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 3e-04
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 8e-26
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 5e-16
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 8e-09
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
 Score =  146 bits (371), Expect = 5e-42
 Identities = 77/326 (23%), Positives = 127/326 (38%), Gaps = 57/326 (17%)

Query: 30  KNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHL 89
            +A+L Q    I  L K + G  FLQK L    S     IFE    Y  +LMTD +G +L
Sbjct: 4   ADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYL 63

Query: 90  ---------------------------------ARSMQKLIKLLVGSPCISLVISAAYRR 116
                                             R++QKLI+ +       +V+ +    
Sbjct: 64  IQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPY 123

Query: 117 FKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGP 176
              +      + VI KCL+ L  +  + ++ A  +   ++ATH  GC  L   ++     
Sbjct: 124 TVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTE 183

Query: 177 RRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLK----YSEKICSLLKGKFEELSLLR 232
           +   L D + +  + L+ DP GNYVVQ+++     K    Y+ KI  LLK +  ELS+ +
Sbjct: 184 QCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHK 243

Query: 233 CGSHLVEKY------------------QRPSIFTPCQHKYGNFVIQQALRVTKGFQMTER 274
            GS+++EK                       I +     YGN+V+Q AL ++        
Sbjct: 244 FGSNVIEKILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLY 303

Query: 275 NIIQELGQSSFIQGIVPFNF--HVVS 298
             + E+     +  I        ++ 
Sbjct: 304 KRLSEIVAPLLVGPIRNTPHGKRIIG 329
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
Probab=100.00  E-value=1.8e-56  Score=411.42  Aligned_cols=266  Identities=23%  Similarity=0.340  Sum_probs=241.8

Q ss_pred             cCcccccchhhHhhhccCcchhHHHHhhhcCCCHHHHHHHHHHHHhcHHHhhcccccchHHHH-----------------
Q 044799           30 KNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARS-----------------   92 (304)
Q Consensus        30 ~~~~l~~~~g~i~~la~d~~gsr~lQ~~l~~~~~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~-----------------   92 (304)
                      .+..++++.|+++++|+||+|||+||++|+.+++++++.||+++.+++.+||+|+|||||+|+                 
T Consensus        17 ~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i   96 (351)
T 3gvo_A           17 PNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRI   96 (351)
T ss_dssp             TTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHH
Confidence            667899999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             ----------------HHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCchHHHHHHHhhCCcccHHHHHHHHHhcHHHH
Q 044799           93 ----------------MQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFREL  156 (304)
Q Consensus        93 ----------------vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~~l  156 (304)
                                      +|++++.+..++ ...+++++.+++..|++|++||||+|++++..+++.+..|++.+.+++.++
T Consensus        97 ~g~~~~l~~~~~G~rvvQk~le~~~~~~-~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~l  175 (351)
T 3gvo_A           97 RGHVLPLALQMYGCRVIQKALESISSDQ-QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL  175 (351)
T ss_dssp             TTCHHHHHTSTTHHHHHHHHHHHSCHHH-HHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHH
T ss_pred             HhhHHHHhhCHHhHHHHHHHHHhCCHHH-HHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence                            899999876554 455667799999999999999999999999999999999999999999999


Q ss_pred             hhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHhccCCHhhHHHHHHHHHHhHHHhhccchhhH
Q 044799          157 ATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSH  236 (304)
Q Consensus       157 a~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~  236 (304)
                      ++|+|||+|+|++++.++++++..+++++.+++..|++|+|||||||++|+.++++.++.|++.+.+++.+||+|||||+
T Consensus       176 s~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~  255 (351)
T 3gvo_A          176 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASN  255 (351)
T ss_dssp             HTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHH
T ss_pred             HhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh-------hhhh---cc------------CCCCchhHHHHHHHhhCCccchHHHHHHHHhhccccccccccccc
Q 044799          237 LVEKYQR-------PSIF---TP------------CQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNF  294 (304)
Q Consensus       237 Vvek~l~-------~~Ii---l~------------~~d~~GnyViq~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  294 (304)
                      |||+|++       +.|+   +.            ++|+|||||||++|+.++++++  ...+..+.++.-..+.+|||+
T Consensus       256 Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r--~~i~~~i~~~~~~L~~~~~g~  333 (351)
T 3gvo_A          256 VVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQR--KIIMHKIRPHITTLRKYTYGK  333 (351)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHH--HHHHHHHGGGHHHHTTSTTTH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHhcCCchH
Confidence            9999999       2333   21            1899999999999999988753  234444555555568889999


Q ss_pred             eEee
Q 044799          295 HVVS  298 (304)
Q Consensus       295 ~i~~  298 (304)
                      +|++
T Consensus       334 ~i~~  337 (351)
T 3gvo_A          334 HILA  337 (351)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 304
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 3e-26
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 5e-15
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 5e-08
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-26
 Identities = 59/310 (19%), Positives = 114/310 (36%), Gaps = 59/310 (19%)

Query: 40  DIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCH----------- 88
            I+   + + GS F+Q  L          +F  + +  + LM D +G +           
Sbjct: 25  HIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSL 84

Query: 89  ---------LARSMQKLIKLLVGSPCI------------SLVISAAYRRFKDMMFSKEAS 127
                    +   +  L   + G   I            + ++          +  +  +
Sbjct: 85  EQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGN 144

Query: 128 SVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISS 187
            V+ KC+E +  Q  + +  A       L+TH  GC  +   +      +   +L+ +  
Sbjct: 145 HVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQ 204

Query: 188 HAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKY------ 241
           H E L +D  GNYV+QHVL  G  +   KI + ++G    LS  +  S++VEK       
Sbjct: 205 HTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASR 264

Query: 242 ----------------QRPSIFTPCQHKYGNFVIQQALRVTKGFQMTE-----RNIIQEL 280
                              +++T  + +Y N+V+Q+ + V +  Q        R  I  L
Sbjct: 265 TERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATL 324

Query: 281 GQSSFIQGIV 290
            + ++ + I+
Sbjct: 325 RKYTYGKHIL 334
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-51  Score=369.33  Aligned_cols=267  Identities=21%  Similarity=0.315  Sum_probs=234.3

Q ss_pred             ccCcccccchhhHhhhccCcchhHHHHhhhcCCCHHHHHHHHHHHHhcHHHhhcccccchHHHH----------------
Q 044799           29 GKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARS----------------   92 (304)
Q Consensus        29 ~~~~~l~~~~g~i~~la~d~~gsr~lQ~~l~~~~~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~----------------   92 (304)
                      ..|..+++++|+++++|+||+|||+||++|+++++++++.||+++.+++.+||+|+|||||+|+                
T Consensus        14 ~~~~~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~~~~~~~~~i~~~   93 (339)
T d1m8za_          14 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAER   93 (339)
T ss_dssp             CTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCCCcHHHHHhHHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHhhCCHHHHHHHHHH
Confidence            3778899999999999999999999999999999999999999999999999999999999997                


Q ss_pred             -----------------HHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCchHHHHHHHhhCCcccHHHHHHHHHhcHHH
Q 044799           93 -----------------MQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRE  155 (304)
Q Consensus        93 -----------------vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~~  155 (304)
                                       +|++++...++... .+.+++.+++..++.|++|+||+|++++..+++.+..+++.+.+++.+
T Consensus        94 l~~~~~~L~~~~~gs~Vvq~l~~~~~~~~~~-~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~i~~~~~~~~~~  172 (339)
T d1m8za_          94 IRGHVLSLALQMYGCRVIQKALEFIPSDQQN-EMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFA  172 (339)
T ss_dssp             HTTCHHHHHTSTTHHHHHHHHHHHSCHHHHH-HHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHHHHHHTTTTHHH
T ss_pred             HHhhHHHHhcccccchHHHhhhccCCHHHHH-HHHHHHhhhhHHHhcCCCcchHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence                             77777765544333 344557777888888888888888888888888899999999999999


Q ss_pred             HhhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHhccCCHhhHHHHHHHHHHhHHHhhccchhh
Q 044799          156 LATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGS  235 (304)
Q Consensus       156 la~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs  235 (304)
                      +++|++||+++|++++.++++++..+++.+.+++..|++|+|||||+|++|+.++++.++.|++.|++++.+||+|||||
T Consensus       173 l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~~~~G~~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~gS  252 (339)
T d1m8za_         173 LSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS  252 (339)
T ss_dssp             HHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHTHHHHTTSTTHHHHHHHHHHHSCHHHHHHHHHHHTTCHHHHHTSTTHH
T ss_pred             HHhCcchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHcchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh-------hhhh-----c----------cCCCCchhHHHHHHHhhCCccchHHHHHHHHhhcccccccccccc
Q 044799          236 HLVEKYQR-------PSIF-----T----------PCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFN  293 (304)
Q Consensus       236 ~Vvek~l~-------~~Ii-----l----------~~~d~~GnyViq~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  293 (304)
                      +|+|+|++       ..++     .          .+.|+|||||||++|++++++++  ...+.++.++......++||
T Consensus       253 ~vve~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~d~~gn~Viq~~l~~~~~~~~--~~i~~~l~~~~~~L~~~~~G  330 (339)
T d1m8za_         253 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQR--KIVMHKIRPHIATLRKYTYG  330 (339)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHCEETTEEHHHHHHTSTTHHHHHHHHHHHSCHHHH--HHHHHTTGGGHHHHTTSSTH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcccCchHHHHHHHcCCcccHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHhcCCcH
Confidence            99999998       1222     0          12899999999999999988653  33444455556666889999


Q ss_pred             ceEee
Q 044799          294 FHVVS  298 (304)
Q Consensus       294 ~~i~~  298 (304)
                      +||+.
T Consensus       331 ~~v~~  335 (339)
T d1m8za_         331 KHILA  335 (339)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure