Citrus Sinensis ID: 044814

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
MPMAVLRNSLASISAQIEPRFRFRTMNIIASKNRNPNQNIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKHAQVNR
cccHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHccccccEEEEEcccccccccHHHHHHHHccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHccccEEEccccccccccEEEcccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccc
cccHHHHHHHHHHHHHcccccccccHHHHHHccccccccHHHccccccccccccccHHHHHHHHHHHHHHccccHcccccccEEEEEcccccccccHHHHHHHHcccEEEEEEEEcHHHHcEccccccEcccHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHccEEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEccccccccEEEEEcccccccHHHccccHHHccccHHHHHHHHHcccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHcccccccccccccHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEcHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHcHHHccccccccccHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccc
MPMAVLRNSLASIsaqieprfrfRTMNIIasknrnpnqniqqkviphcqvipgadsreinHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAwdssemvlpvycvdprhsqttyhfgfpktGALRAQFLIECLADLRKNLMNRGLNLLirhgkpeeiiPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSsqsndkstnhpqlkliwgttmyhlddipfdhsslpdvYTHFRKSIEAKctvrgciripssfgpppsvvdwgsvplieqlelhspkvskgmrfvggesaalgrvneyFWKKDLLKVYKETRnemlgpdystkfspwlasgsispryiYEEVKSYErervandsTYWVLFELMWRDYFRFISLKygnslfhlggprkleykWSQDQKLFESwrdgctgypliDANMKelsmtgfmsnrgrQIACSFLVRDMGIDWRMGAEWFETclldydpcsnygnwtygagvgndpredryfsipkqaqnydregEYVAYWLPqlkalpkerrnfpggsyIEQIVSLKhgninqnrnqndsltrtgrrnnfkgkhaqvnr
MPMAVLRNSLasisaqieprfrFRTMNIIASKnrnpnqniqQKVIPHCQVIPGADSREINHIVEETfgrytskalkrngKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVlssqsndkstnhpQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELhspkvskgmrfVGGEsaalgrvneyfwKKDLLKVYKETRNEMlgpdystkfspwlasgsispRYIYEEVKSyerervandSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVslkhgninqnrnqndsltrtgrrnnfkgkhaqvnr
MPMAVLRNSLASISAQIEPRFRFRTMNIIASKNRNPNQNIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKHAQVNR
****************IEPRFRFRTMNIIA*********IQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV*************QLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLK********************************
***A************************************QQKVIPHCQVIPGA*SREINHIV********************IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPS*FGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE*****NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQ**********************
MPMAVLRNSLASISAQIEPRFRFRTMNIIASKNRNPNQNIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV***********HPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFK********
************IS*QIEPRFRFRTMNIIASKNRNPNQNIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALK*NGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRT***************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPMAVLRNSLASISAQIEPRFRFRTMNIIASKNRNPNQNIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKHAQVNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query577 2.2.26 [Sep-21-2011]
Q38JU2577 Cryptochrome DASH, chloro N/A no 0.927 0.927 0.673 0.0
Q84KJ5569 Cryptochrome DASH, chloro yes no 0.859 0.871 0.715 0.0
Q651U1582 Cryptochrome DASH, chloro yes no 0.849 0.841 0.729 0.0
Q75WS4523 Cryptochrome DASH OS=Xeno N/A no 0.786 0.868 0.492 1e-133
Q4KML2520 Cryptochrome DASH OS=Dani yes no 0.748 0.830 0.488 1e-130
P77967489 Cryptochrome DASH OS=Syne N/A no 0.760 0.897 0.498 1e-129
Q7NMD1500 Cryptochrome DASH OS=Gloe yes no 0.759 0.876 0.491 1e-124
Q7UJB1488 Cryptochrome DASH OS=Rhod yes no 0.743 0.879 0.473 1e-120
Q3IPX9474 Cryptochrome DASH OS=Natr yes no 0.743 0.905 0.477 1e-116
Q5IFN2546 Cryptochrome DASH, chloro no no 0.759 0.802 0.431 1e-105
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2 Back     alignment and function desciption
 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/542 (67%), Positives = 437/542 (80%), Gaps = 7/542 (1%)

Query: 39  NIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALKRNGKG-VAIVWFRNDLRVLDNE 97
           ++  +  P  Q +PG    E+  + E+TF RY S  L +     VAIVWFRNDLRVLDNE
Sbjct: 35  SLTARTTPTVQNVPGLTPEEMERVCEQTFQRYESGGLGKRKGKGVAIVWFRNDLRVLDNE 94

Query: 98  ALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNL 157
           ALL+AW SSE +LPVYCVDPR   TT++FG PKTGALRAQF+IECL DL++NL+ RGL+L
Sbjct: 95  ALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDL 154

Query: 158 LIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQS---NDK- 213
           LI+HGKPE+I+PSLAK++ AH VYA KETCSEE+ VE++V +NLQ++V  S     ND  
Sbjct: 155 LIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPG 214

Query: 214 STNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS 273
           S N  +L+L+WG+TMYH+DD+PFD  SLPDVYT FRKS+E K  VR C ++P+SFGPPP 
Sbjct: 215 SGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKVRNCTKLPTSFGPPPE 274

Query: 274 VVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGP 333
           V DWG VP + +L L   KVSKGM FVGGESAALGRV++YFWKKDLLKVYKETRN MLG 
Sbjct: 275 VGDWGHVPQVSELGLQQEKVSKGMNFVGGESAALGRVHDYFWKKDLLKVYKETRNGMLGA 334

Query: 334 DYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNS 393
           DYSTKFSPWLASGS+SPR+IYEEVK YE+ER++NDSTYWVLFEL+WRDYFRF+S+K  N 
Sbjct: 335 DYSTKFSPWLASGSLSPRFIYEEVKRYEKERLSNDSTYWVLFELIWRDYFRFLSIKLANL 394

Query: 394 LFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLV 453
           LF  GGP+K+   WSQDQ +F++WR G TGYPLIDANMKEL+ TG+MSNRGRQI CSFLV
Sbjct: 395 LFQAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDANMKELAATGYMSNRGRQIVCSFLV 454

Query: 454 RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGE 513
           RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGE
Sbjct: 455 RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGE 514

Query: 514 YVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSL-TRTGR-RNNFKGK 571
           +VAYWLP+L+ALP+E+R+ PG  Y+  IV+LKHG   +  +   +  +R GR  +N + +
Sbjct: 515 FVAYWLPELRALPREKRHSPGMMYLNPIVALKHGYTKKTGDSKTAFSSRRGRPEDNRRKR 574

Query: 572 HA 573
           H 
Sbjct: 575 HG 576
May have a photoreceptor function. Bind ss- and ds-DNA in a sequence non-specific manner, lacks photolyase activity.
Solanum lycopersicum (taxid: 4081)
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2 Back     alignment and function description
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1 Back     alignment and function description
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1 Back     alignment and function description
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2 Back     alignment and function description
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=cry PE=1 SV=2 Back     alignment and function description
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry PE=3 SV=1 Back     alignment and function description
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry PE=3 SV=2 Back     alignment and function description
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1 Back     alignment and function description
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri GN=Ot01g06320 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query577
296081780586 unnamed protein product [Vitis vinifera] 0.982 0.967 0.701 0.0
225429814549 PREDICTED: cryptochrome DASH, chloroplas 0.899 0.945 0.755 0.0
356507809549 PREDICTED: cryptochrome DASH, chloroplas 0.899 0.945 0.747 0.0
224121408552 predicted protein [Populus trichocarpa] 0.904 0.945 0.704 0.0
147866138584 hypothetical protein VITISV_014519 [Viti 0.863 0.852 0.724 0.0
255574119576 DNA photolyase, putative [Ricinus commun 0.897 0.899 0.717 0.0
449505505549 PREDICTED: cryptochrome DASH, chloroplas 0.902 0.948 0.724 0.0
449437082549 PREDICTED: cryptochrome DASH, chloroplas 0.902 0.948 0.724 0.0
242096612577 hypothetical protein SORBIDRAFT_10g02642 0.894 0.894 0.699 0.0
413955020578 hypothetical protein ZEAMMB73_818499 [Ze 0.892 0.891 0.697 0.0
>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/583 (70%), Positives = 474/583 (81%), Gaps = 16/583 (2%)

Query: 3   MAVLRNSLAS--ISAQIEPR------FRFRTMNIIASKNRNPNQNIQQKVIPHCQVIPGA 54
           MAVL +SL++  I   + P         + T   +++ N  P              +P  
Sbjct: 1   MAVLSSSLSAFFIKKLVHPSKPTSIFSHYSTHPHLSAMNFPPRSKPGSAASATTSEVPDL 60

Query: 55  DSREINHIVEETFGRYTSK-ALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVY 113
            S E+  IVE+TF RY+S    KRNG GVAIVWFRNDLRVLDNEAL+KAW SS+ VLPVY
Sbjct: 61  PSNEMGKIVEQTFQRYSSSDEAKRNGSGVAIVWFRNDLRVLDNEALVKAWASSQAVLPVY 120

Query: 114 CVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAK 173
           CVDPR   TT++FGFPKTGALRAQFLIECLADL++NLMNRGLNLLI+HGKPEEI+PSLAK
Sbjct: 121 CVDPRLFGTTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAK 180

Query: 174 SFGAHAVYAQKETCSEELNVERLVRKNLQQVVL----SSQSNDKSTNHPQLKLIWGTTMY 229
           +F AH VYA KETCSEELNVERLVR  L+QVVL       ++  S+NHP+L+LIWG+TMY
Sbjct: 181 TFEAHTVYAHKETCSEELNVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMY 240

Query: 230 HLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELH 289
           H++D+PF  SSLPDVYT FRKS+E+KCT+R CIR P+  GPPP++ DWGSVP I+QL LH
Sbjct: 241 HIEDLPFSTSSLPDVYTQFRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLH 300

Query: 290 SPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSIS 349
             KVS+GMRF+GGE+AAL RVNEYFWKKDLLKVYK TRN MLG DYSTKFSPWLASGS+S
Sbjct: 301 EEKVSRGMRFIGGEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLS 360

Query: 350 PRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ 409
           PR+IY+EVK YE+ER ANDSTYWVLFEL+WRDYFRF+S+KY NSLFHLGGPRK+E +WSQ
Sbjct: 361 PRFIYQEVKRYEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEARWSQ 420

Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
           DQ +FE+WRDGCTGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFET
Sbjct: 421 DQTMFEAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 480

Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
           CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD EGEYVA+WLP+L+ALP ++
Sbjct: 481 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDK 540

Query: 530 RNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKH 572
           RNFPG SYI QIV LK GNI  + +++ +   + RR  F+GK 
Sbjct: 541 RNFPGKSYINQIVPLKFGNITSSGDKDSA---SARRTAFRGKQ 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225429814|ref|XP_002280771.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507809|ref|XP_003522656.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa] gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis] gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449505505|ref|XP_004162492.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449437082|ref|XP_004136321.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor] gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413955020|gb|AFW87669.1| hypothetical protein ZEAMMB73_818499 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query577
ZFIN|ZDB-GENE-040617-2521 cry-dash "cryptochrome DASH" [ 0.745 0.825 0.493 1.9e-122
UNIPROTKB|Q9KR33461 cry1 "Cryptochrome DASH" [Vibr 0.474 0.594 0.458 1.6e-73
TIGR_CMR|VC_1814461 VC_1814 "RNA-binding cryptochr 0.474 0.594 0.458 1.6e-73
TAIR|locus:2061961447 PHR2 "photolyase/blue-light re 0.540 0.697 0.385 5.6e-52
TAIR|locus:2093217556 UVR3 "UV REPAIR DEFECTIVE 3" [ 0.753 0.782 0.287 2.6e-40
TIGR_CMR|CBU_1176472 CBU_1176 "deoxyribodipyrimidin 0.483 0.591 0.304 1.1e-38
UNIPROTKB|P00914472 phr "deoxyribodipyrimidine pho 0.433 0.529 0.311 2.4e-37
ASPGD|ASPL0000053661567 cryA [Emericella nidulans (tax 0.381 0.388 0.333 4.9e-37
UNIPROTKB|Q2TV23529 LOC395100 "Cryptochrome-like p 0.722 0.788 0.288 4e-33
UNIPROTKB|F1P5X2547 LOC395100 "Uncharacterized pro 0.722 0.762 0.288 7.9e-33
ZFIN|ZDB-GENE-040617-2 cry-dash "cryptochrome DASH" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 220/446 (49%), Positives = 300/446 (67%)

Query:    84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
             I   RNDLR+ DNE    A  ++E ++P+YC DPRH Q TYH+ FPKTG  R +FL++ +
Sbjct:     9 ICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSV 68

Query:   144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERLVRKNLQ 202
              DLR  L   G  LL+R GKPE+++  L K  G+ +  A  +E  SEE +VE    + L+
Sbjct:    69 KDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVE----EKLK 124

Query:   203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRGC 261
             ++           N  +++  WG+T+YH DD+PF H   LPDVYT FRK++EA+  VR  
Sbjct:   125 EICCQ--------NKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPV 176

Query:   262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--GGESAALGRVNEYFWKKDL 319
             +  P     PPS ++ G +P  + L    P       F   GGE+ AL R+  YFW  + 
Sbjct:   177 LSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNA 236

Query:   320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
             +  YKETRN M+G D+STKFSPWLA G ISPRYIYE++K YE ER AN STYWV+FEL+W
Sbjct:   237 VATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQSTYWVIFELLW 296

Query:   380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
             RDYF+F++LKYGN +F++ G +     W+ D K+F++W++G TG P +DANM+EL++TGF
Sbjct:   297 RDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTGF 356

Query:   440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
             MSNRGRQ   SFL +D+G+DWR+GAEWFE  L+D+D CSNYGNW Y AG+GNDPRE+R F
Sbjct:   357 MSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRENRKF 416

Query:   500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
             ++ KQ  +YD  G+YV  W+P+L+ +
Sbjct:   417 NMIKQGLDYDNNGDYVRQWVPELRGI 442
GO:0003913 "DNA photolyase activity" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0003684 "damaged DNA binding" evidence=IDA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA
GO:0000719 "photoreactive repair" evidence=IDA
GO:0003904 "deoxyribodipyrimidine photo-lyase activity" evidence=IDA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0018298 "protein-chromophore linkage" evidence=IEA
UNIPROTKB|Q9KR33 cry1 "Cryptochrome DASH" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1814 VC_1814 "RNA-binding cryptochrome Cry1" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TAIR|locus:2061961 PHR2 "photolyase/blue-light receptor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093217 UVR3 "UV REPAIR DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1176 CBU_1176 "deoxyribodipyrimidine photolyase - class I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P00914 phr "deoxyribodipyrimidine photolyase (photoreactivation)" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053661 cryA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TV23 LOC395100 "Cryptochrome-like protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5X2 LOC395100 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q651U1CRYD_ORYSJNo assigned EC number0.72940.84920.8419yesno
Q38JU2CRYD_SOLLCNo assigned EC number0.67340.92720.9272N/Ano
Q84KJ5CRYD_ARATHNo assigned EC number0.71560.85960.8717yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
TIGR02765429 TIGR02765, crypto_DASH, cryptochrome, DASH family 0.0
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 1e-107
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 6e-66
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 6e-56
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 1e-46
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 4e-40
TIGR02766475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 1e-33
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information 
 Score =  662 bits (1711), Expect = 0.0
 Identities = 257/442 (58%), Positives = 317/442 (71%), Gaps = 13/442 (2%)

Query: 81  GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
            V + WFRNDLRV DN AL KA  SS+ ++P+YC DPR  + T+ FGFPKTG  R +FL+
Sbjct: 1   KVVLYWFRNDLRVHDNPALYKASSSSDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLL 60

Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
           E L DLR +L   G +LL+R GKPE+++P L K  G   V+  +E  SEE +VERL+++ 
Sbjct: 61  ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQA 120

Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
           L ++ +  +              WG+T+YH DD+PFD   LPDV+T FRK +EAKC++R 
Sbjct: 121 LARLGIHVEQ------------HWGSTLYHEDDLPFDLEDLPDVFTQFRKQVEAKCSIRP 168

Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
            +  P    P PSV D G +P +E L   S +V +G+ FVGGE+A L R+ EYFW KDL 
Sbjct: 169 PLPAPEKLPPLPSVDDPGWIPTLEDLGEESSEVDRGLPFVGGETAGLARLKEYFWSKDL- 227

Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
           K YKETRN MLGPDYSTKFSPWLA G +SPR IYEE++ YE ER ANDSTYWV+FEL+WR
Sbjct: 228 KSYKETRNGMLGPDYSTKFSPWLALGCVSPRQIYEELQRYETERGANDSTYWVIFELLWR 287

Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
           DYFRF +LKYGN LF  GG R    KWS D K FE W+ G TGYPL+DANM+EL+ TGFM
Sbjct: 288 DYFRFYALKYGNRLFRFGGLRGKHPKWSFDAKRFEQWKTGTTGYPLVDANMRELNATGFM 347

Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
           SNRGRQ   SFLV+D+G+DWR GAEWFET L+DYD CSN+GNW Y AGVGNDPR  R F+
Sbjct: 348 SNRGRQNVASFLVKDLGLDWRYGAEWFETQLVDYDVCSNWGNWQYLAGVGNDPRGSRQFN 407

Query: 501 IPKQAQNYDREGEYVAYWLPQL 522
           I KQAQ+YD +GEYVA W+P+L
Sbjct: 408 IEKQAQDYDPDGEYVATWVPEL 429

Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes [Cellular processes, Adaptations to atypical conditions, Regulatory functions, DNA interactions]. Length = 429
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 577
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
KOG0133531 consensus Deoxyribodipyrimidine photolyase/cryptoc 100.0
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 99.98
COG3046505 Uncharacterized protein related to deoxyribodipyri 99.97
PF04244224 DPRP: Deoxyribodipyrimidine photo-lyase-related pr 97.72
KOG0133531 consensus Deoxyribodipyrimidine photolyase/cryptoc 95.36
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-116  Score=924.10  Aligned_cols=440  Identities=31%  Similarity=0.578  Sum_probs=384.9

Q ss_pred             CeEEEEecCcccccCcHHHHHHHhCCCC-EEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEE
Q 044814           81 GVAIVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLI  159 (577)
Q Consensus        81 ~~~L~WFRrDLRl~DN~AL~~A~~~~~~-vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v  159 (577)
                      +++|||||||||+.||+||++|++.+.+ ++.|||++|.++.        ..|+++.+||.+||++|+++|+++||+|+|
T Consensus         2 ~~~l~WfrrDLR~~DN~aL~~A~~~~~~~~~~vfi~~~~~~~--------~~~~~~~~Fl~~sL~~L~~~L~~~gi~L~v   73 (461)
T COG0415           2 STVLVWFRRDLRLTDNAALAAACQSGQPVIIAVFILDPEQLG--------HASPRHAAFLLQSLQALQQSLAELGIPLLV   73 (461)
T ss_pred             CeEEEEeccccccCChHHHHHHHhcCCCceEEEEEechhhcc--------ccCHHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence            5799999999999999999999998877 5689999999873        369999999999999999999999999999


Q ss_pred             EeCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCCCCCC
Q 044814          160 RHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHS  239 (577)
Q Consensus       160 ~~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~~~~  239 (577)
                      ..|++.++|++++++.++.+||+|.+|...+..+|..++..|.+.++.            ++.+|+..++++.++.+..+
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~------------~~~~~d~~l~~p~~~~t~~~  141 (461)
T COG0415          74 REGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIA------------VHSFWDALLHEPGEVRTGSG  141 (461)
T ss_pred             EeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCce------------EEEeccccccCHhhccCCCC
Confidence            999999999999999999999999999999999999999998877654            36689999999999999999


Q ss_pred             CCCcccchhHHHHHHhcccCCccCCCCCCCCCCCCCCCCCCCchhhhccCCCcccCCCcccccHHHHHHHHHHHhhhccc
Q 044814          240 SLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL  319 (577)
Q Consensus       240 ~~p~~ft~F~k~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~  319 (577)
                      ++|++||+|++.|.....+..|.+.|..+....+...   .+....  ...........|.|||.+|+++|++||.  +.
T Consensus       142 ~~y~vfT~F~k~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~--~P~~~~~~~~~~~~Ge~aA~~~l~~F~~--~~  214 (461)
T COG0415         142 EPYKVFTPFYKAWRDRLRILRPVPAPDVLDALRDEEP---PPEEIS--LPDFSKFDVLLFTGGEKAALARLQDFLA--EG  214 (461)
T ss_pred             CCccccchHHHHHHHhcccCCCCCCcchhcccccccc---Cccccc--CCccccccccCCCchHHHHHHHHHHHHH--HH
Confidence            9999999999999876544555555543322211100   011100  1000011233689999999999999994  57


Q ss_pred             hhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhhhccCCchHhHhhhhhHHHHHHHHHHHcCCc-ccccC
Q 044814          320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNS-LFHLG  398 (577)
Q Consensus       320 l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~fl~eL~WREf~~~~~~~~~~~-~~~~~  398 (577)
                      +..|++.||.| +.++||+|||||+||+||||+||+++++....  ..+++.+|++||+|||||+|++++||+. ....+
T Consensus       215 l~~Y~~~Rd~p-~~~~TS~LSpyL~~G~IS~r~v~~~~~~~~~~--~~~~~~~~~~eL~WREFy~h~~~~~p~~~~~~~~  291 (461)
T COG0415         215 LDDYERTRDFP-ALDGTSRLSPYLAFGVISPREVYAALLAAESD--AREGTAALINELIWREFYQHLLYHYPSLSRFEPF  291 (461)
T ss_pred             HHHHHHhcCCc-ccccccccCHHHHcCCcCHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHHHHHHhCCcccccccc
Confidence            99999999975 55779999999999999999999999885432  4567889999999999999999999987 44456


Q ss_pred             CCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhccccCCCC
Q 044814          399 GPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS  478 (577)
Q Consensus       399 ~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k~L~idWr~G~~~F~~~LiD~D~a~  478 (577)
                      ......++|++++++|++|++|+|||||||||||||++||||||||||||||||||+|+||||+||+||+++|||||+||
T Consensus       292 ~~~~~~~~w~~~~~~f~aW~~G~TGyPIVDA~MRqL~~TG~MHNR~RMivAsFL~k~L~IdWR~GE~~F~~~LiD~D~as  371 (461)
T COG0415         292 AEKTLNIPWEDNPAHFQAWQEGKTGYPIVDAAMRQLNQTGYMHNRMRMIVASFLTKDLLIDWREGEKYFMRQLIDGDPAS  371 (461)
T ss_pred             cccccCCccccCHHHHHHHhcCCCCCccccHHHHHHHHhCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCCCccc
Confidence            67778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhhhCCCCCCC-CCcccChhhhhhhcCCccchhhhccccccCCCccccCCC--------CCCCCcCccccccccc
Q 044814          479 NYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--------GGSYIEQIVSLKHGNI  549 (577)
Q Consensus       479 n~g~Wqw~ag~g~d~~-~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P--------~~~Yp~PIV~~~~~~~  549 (577)
                      |+|||||+||+|+|++ |||||||++|++||||+|+|||+|||||++||.++||+|        +.+||+|||||+.++.
T Consensus       372 N~ggWQW~AstG~Da~pyfRiFNp~~Q~~kfDp~g~fIr~wvPeL~~~~~~~ih~p~~~~~~~~~~~YP~piVd~~~~r~  451 (461)
T COG0415         372 NNGGWQWAASTGTDAAPYFRIFNPVTQAEKFDPDGEFIRRWVPELRNLPDKYIHEPWELSEVVLGVDYPKPIVDHKESRE  451 (461)
T ss_pred             CCCCeeEEeccCCCCCcceeccCHHHHHhhcCCCcccHHhhCHHhhCCChhhccChhhcccccccCCCCccccccHHHHH
Confidence            9999999999999997 899999999999999999999999999999999999999        4599999999998765


Q ss_pred             c
Q 044814          550 N  550 (577)
Q Consensus       550 ~  550 (577)
                      .
T Consensus       452 ~  452 (461)
T COG0415         452 Q  452 (461)
T ss_pred             H
Confidence            4

>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases Back     alignment and domain information
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
2ijg_X526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 0.0
2j4d_A525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 0.0
2vtb_B525 Structure Of Cryptochrome 3 - Dna Complex Length = 0.0
1np7_A489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 1e-130
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 3e-42
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 4e-42
3fy4_A537 (6-4) Photolyase Crystal Structure Length = 537 6e-40
1dnp_A471 Structure Of Deoxyribodipyrimidine Photolyase Lengt 9e-38
2e0i_A440 Crystal Structure Of Archaeal Photolyase From Sulfo 3e-35
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 2e-30
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 6e-30
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 8e-30
1iqr_A420 Crystal Structure Of Dna Photolyase From Thermus Th 5e-27
1u3c_A509 Crystal Structure Of The Phr Domain Of Cryptochrome 2e-23
4gu5_A539 Structure Of Full-Length Drosophila Cryptochrome Le 1e-13
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure 
Iteration: 1

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/506 (71%), Positives = 417/506 (82%), Gaps = 14/506 (2%)
Query: 47  HCQVIPGADSREINHIVEETFGRY---TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAW 103
           H   +P     EI+ +  +TF RY   +S ++KR GKGV I+WFRNDLRVLDN+AL KAW
Sbjct: 4   HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAW 63
Query: 104 DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGK 163
            SS+ +LPVYC+DPR   TT+ F FPKTGALR  FL+ECL DLRKNLM RGLNLLIR GK
Sbjct: 64  SSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGK 123
Query: 164 PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLI 223
           PEEI+PSLAK FGA  V+A KETCSEE++VERLV + L++V           N  +L+LI
Sbjct: 124 PEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTKLELI 173
Query: 224 WGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLI 283
           WG+TMYH DD+PFD   LPDVYT FRKS+EAKC++R   RIP S GP PSV DWG VP +
Sbjct: 174 WGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTL 233
Query: 284 EQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWL 343
           E+L +   +V++GMRFVGGESA +GRV EYFWKKDLLKVYKETRN MLGPDYSTKFSPWL
Sbjct: 234 EKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWL 293
Query: 344 ASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL 403
           A G ISPR+IYEEV+ YE+ERVAN+STYWVLFEL+WRDYFRF+S+K GNSLFHLGGPR +
Sbjct: 294 AFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNV 353
Query: 404 EYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMG 463
           + KWSQDQKLFESWRD  TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMG+DWRMG
Sbjct: 354 QGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMG 413
Query: 464 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
           AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGEYVA+WL QL+
Sbjct: 414 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLR 473
Query: 524 ALPKERRNFPGG-SYIEQIVSLKHGN 548
            LPKE+R++PG   Y++ +V LKHGN
Sbjct: 474 RLPKEKRHWPGRLMYMDTVVPLKHGN 499
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 0.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 0.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 1e-132
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 1e-131
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 1e-105
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 1e-92
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 1e-91
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 1e-90
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 2e-89
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 5e-86
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 2e-64
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 3e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
 Score =  615 bits (1589), Expect = 0.0
 Identities = 365/532 (68%), Positives = 422/532 (79%), Gaps = 15/532 (2%)

Query: 47  HCQVIPGADSREINHIVEETFGRY---TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAW 103
           H   +P     EI+ +  +TF RY   +S ++KR GKGV I+WFRNDLRVLDN+AL KAW
Sbjct: 3   HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAW 62

Query: 104 DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGK 163
            SS+ +LPVYC+DPR   TT+ F FPKTGALR  FL+ECL DLRKNLM RGLNLLIR GK
Sbjct: 63  SSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGK 122

Query: 164 PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLI 223
           PEEI+PSLAK FGA  V+A KETCSEE++VERLV + L++V           N  +L+LI
Sbjct: 123 PEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTKLELI 172

Query: 224 WGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLI 283
           WG+TMYH DD+PFD   LPDVYT FRKS+EAKC++R   RIP S GP PSV DWG VP +
Sbjct: 173 WGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTL 232

Query: 284 EQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWL 343
           E+L +   +V++GMRFVGGESA +GRV EYFWKKDLLKVYKETRN MLGPDYSTKFSPWL
Sbjct: 233 EKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWL 292

Query: 344 ASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL 403
           A G ISPR+IYEEV+ YE+ERVAN+STYWVLFEL+WRDYFRF+S+K GNSLFHLGGPR +
Sbjct: 293 AFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNV 352

Query: 404 EYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMG 463
           + KWSQDQKLFESWRD  TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMG+DWRMG
Sbjct: 353 QGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMG 412

Query: 464 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
           AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGEYVA+WL QL+
Sbjct: 413 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLR 472

Query: 524 ALPKERRNFPGG-SYIEQIVSLKHGNINQ-NRNQNDSLTRTGRRNNFKGKHA 573
            LPKE+R++PG   Y++ +V LKHGN      +++    R          + 
Sbjct: 473 RLPKEKRHWPGRLMYMDTVVPLKHGNGPMAGGSKSGGGFRGSHSGRRSRHNG 524
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query577
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
3dlo_A155 Universal stress protein; unknown function, struct 84.2
3fdx_A143 Putative filament protein / universal stress PROT; 83.8
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
Probab=100.00  E-value=2e-117  Score=978.46  Aligned_cols=495  Identities=71%  Similarity=1.243  Sum_probs=416.6

Q ss_pred             cccccccCCCchhhhhhHHHhhhhccccccc--cCC-CCeEEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCcccc
Q 044814           46 PHCQVIPGADSREINHIVEETFGRYTSKALK--RNG-KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT  122 (577)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~  122 (577)
                      .+++.+|++.++|+.|+.++.++++++++..  +++ ++.+|+|||+|||++||+||.+|++.+.+|+||||+||.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~   81 (525)
T 2j4d_A            2 DHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHT   81 (525)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHHHBCSCCTTCCCTTCCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSB
T ss_pred             CccccCCCCCHHHHHHHhHHHhhccCCcccccccCCCCCeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcc
Confidence            3678999999999999999999999999998  665 6789999999999999999999998888999999999988742


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhh
Q 044814          123 TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ  202 (577)
Q Consensus       123 ~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~  202 (577)
                      .+.++++..|++|++||++||++|+++|+++|++|+|+.|+++++|++|++++++++|+++.+|++.++++|..|++.|.
T Consensus        82 ~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~  161 (525)
T 2j4d_A           82 THFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLK  161 (525)
T ss_dssp             CTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHH
Confidence            22113456899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hccccccCCCcccCCCceeEeecceeccCCCCCCCCCCCCcccchhHHHHHHhcccCCccCCCCCCCCCCCCCCCCCCCc
Q 044814          203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPL  282 (577)
Q Consensus       203 ~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~~~~~~p~~ft~F~k~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~p~  282 (577)
                      +.++.          ..++.+++.+++++++++...+.+|.+||+|++++++...+..|++.|..+.+.+...+...+|+
T Consensus       162 ~~gv~----------i~~~~~~~~~L~~p~~v~~~~g~~~~vft~F~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~  231 (525)
T 2j4d_A          162 RVGNS----------TKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPT  231 (525)
T ss_dssp             TTCSS----------CEEEEECCSCSSCGGGSSSCGGGCCSSHHHHHHHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCC
T ss_pred             hcCCc----------eEEEEecCCEEEccccccccCCCCcccHHHHHHHHHHhcCCCCCCCCccccCCccccccccCCCC
Confidence            65420          13577888899999999998889999999999999886544445554443322221112334566


Q ss_pred             hhhhccCCCcccCCCcccccHHHHHHHHHHHhhhccchhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHh
Q 044814          283 IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER  362 (577)
Q Consensus       283 l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~  362 (577)
                      ++++++..........|+|||++|+++|++||.++++|..|++.||.|++.++||+|||||+|||||||+|++++.++..
T Consensus       232 l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~  311 (525)
T 2j4d_A          232 LEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEK  311 (525)
T ss_dssp             TTTTTCCCCCCCSEEEECCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHcCCCcccccccCCCCCcHHHHHHHHHHHHhhCchHhhhcccCCCccccccCCCcChhhcCCcCCHHHHHHHHHHHhh
Confidence            66665543211122348999999999999999423579999999998766778999999999999999999999987544


Q ss_pred             hhccCCchHhHhhhhhHHHHHHHHHHHcCCcccccCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccch
Q 044814          363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN  442 (577)
Q Consensus       363 ~~~~~~~~~~fl~eL~WREf~~~~~~~~~~~~~~~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHn  442 (577)
                      .....+++++|++||+|||||++++++++...+...+..+..++|+.+.+.|++|++|+|||||||||||||++||||||
T Consensus       312 ~~~~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHn  391 (525)
T 2j4d_A          312 ERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSN  391 (525)
T ss_dssp             HTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGTSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCH
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHcCchhhhccCchhhcCCCCCCHHHHHHHHcCCCCChHHHHHHHHHHHHCCcCH
Confidence            33344577899999999999999999888655554433456789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhccccCCCCCchhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhccccc
Q 044814          443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL  522 (577)
Q Consensus       443 r~RmivAsFL~k~L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wvPEL  522 (577)
                      |+||||||||||+|+||||.|++||+++|||||+|||+|||||+||+|+|+++||||||++|++||||+|+|||||||||
T Consensus       392 r~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a~n~g~WQw~aG~g~D~~~~RifNP~~q~kk~Dp~G~YIrrwvPEL  471 (525)
T 2j4d_A          392 RGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQL  471 (525)
T ss_dssp             HHHHHHHHHHHHTSCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSSCGGGCCCCCHHHHHHHHCTTCHHHHHHSGGG
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHhccccchhcChHHHHhhcCCCCCccccccCCHHHHhhhcCCCchhHHHhChhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCC----------CCCCcCcccccccccc
Q 044814          523 KALPKERRNFPG----------GSYIEQIVSLKHGNIN  550 (577)
Q Consensus       523 ~~lp~~~ih~P~----------~~Yp~PIV~~~~~~~~  550 (577)
                      +++|.++||+||          .+||.|||||..++..
T Consensus       472 ~~~p~~~ih~Pw~~~~~~~~~g~~Yp~Pi~~~~~~~~~  509 (525)
T 2j4d_A          472 RRLPKEKRHWPGRLMYMDTVVPLKHGNGPMAGGSKSGG  509 (525)
T ss_dssp             TTSCTTTTTSCHHHHTCCCSSCCSCCC-----------
T ss_pred             hcCChhcccCCccCcccccccCCCCCCCcccchhhhhc
Confidence            999999999994          4899999999976554
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 577
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 1e-45
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 2e-43
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 2e-36
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 3e-36
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 2e-33
d1np7a2204 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp. 5e-27
d1dnpa2200 c.28.1.1 (A:1-200) DNA photolyase {Escherichia col 4e-19
d1owla2202 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus e 1e-18
d1u3da2185 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Ara 2e-17
d2j07a2170 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermop 5e-17
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

 Score =  160 bits (404), Expect = 1e-45
 Identities = 151/266 (56%), Positives = 194/266 (72%), Gaps = 15/266 (5%)

Query: 297 MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE 356
           + F GGE+A L R+ +YFW  D LK YKETRN M+G DYS+KFSPWLA G +SPR+IY+E
Sbjct: 6   LAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQE 65

Query: 357 VKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFES 416
           VK YE+ERV+NDST+W++FEL+WRD+FRF++ KYGN LF+ GG     + W +DQ  FE 
Sbjct: 66  VKRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFEL 125

Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
           WR G TGYPL+DANM+EL++TGFMSNRGRQ   SFL +++GIDWR GAEWFE+CL+DYD 
Sbjct: 126 WRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDV 185

Query: 477 CSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--- 533
           CSN+GNW Y AG+GND R+ RYF+IPKQ+Q YD +G Y+ +WLP+LK LP ++ + P   
Sbjct: 186 CSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLL 245

Query: 534 ------------GGSYIEQIVSLKHG 547
                       G  Y    V+    
Sbjct: 246 SATEQKQWGVQLGVDYPRPCVNFHQS 271
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 204 Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 202 Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 185 Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query577
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 100.0
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 100.0
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 99.97
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 99.97
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=100.00  E-value=1.5e-81  Score=638.29  Aligned_cols=254  Identities=59%  Similarity=1.150  Sum_probs=234.7

Q ss_pred             CCcccccHHHHHHHHHHHhhhccchhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhhhccCCchHhHhh
Q 044814          296 GMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF  375 (577)
Q Consensus       296 ~~~~~gGe~~A~~rL~~Fl~~~~~l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~fl~  375 (577)
                      ...|+|||++|+++|++||...+++..|++.||.+++.++||+|||||+||+||||+|+++++++......+.+.++|++
T Consensus         5 ~~~f~gGe~~Al~~L~~Fl~~~~~l~~Y~~~Rn~~~~~~~~S~LSPyL~~G~LS~rev~~~~~~~~~~~~~~~~~~~~~~   84 (279)
T d1np7a1           5 VLAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIF   84 (279)
T ss_dssp             SCCCCCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             cCCCCChHHHHHHHHHHHHhcccchhhhhHhcCCCCCCCCccccCHHHcCCccCHHHHHHHHHHHhhcccccchHHHHHH
Confidence            44699999999999999996445799999999977777789999999999999999999999886544445557789999


Q ss_pred             hhhHHHHHHHHHHHcCCcccccCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHh
Q 044814          376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRD  455 (577)
Q Consensus       376 eL~WREf~~~~~~~~~~~~~~~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k~  455 (577)
                      ||+|||||++++.++|+..+......+..++|..+++.|++|++|+||+||||||||||++|||||||+|||||||||++
T Consensus        85 ~l~WRef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDAamr~L~~tG~~Hn~~Rm~vasfl~~~  164 (279)
T d1np7a1          85 ELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKN  164 (279)
T ss_dssp             HHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhhcchhhhhccccchhhhccccccccchHHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Confidence            99999999999999998777666666778999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHhccccCCCCCchhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhccccccCCCccccCCCC-
Q 044814          456 MGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG-  534 (577)
Q Consensus       456 L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~-  534 (577)
                      |+|||+.|++||+++|||||+|+|++||||+||+|+|++++|+|||++|++||||+|+|||||||||++||.++||+|| 
T Consensus       165 l~i~W~~g~~~f~~~liD~d~a~n~~~wq~~ag~~~~~~~~r~~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~pw~  244 (279)
T d1np7a1         165 LGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWL  244 (279)
T ss_dssp             TCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTTSCCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGG
T ss_pred             ceeccccchHHHHHHHHhcChhhhhHHhhhhhhhccccccccccCCcchHhhcCCCHHHHHHHhHhhhcCCHHhhcChhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999994 


Q ss_pred             --------------CCCCcCccccccccc
Q 044814          535 --------------GSYIEQIVSLKHGNI  549 (577)
Q Consensus       535 --------------~~Yp~PIV~~~~~~~  549 (577)
                                    .+||+|||||+++..
T Consensus       245 ~~~~~~~~~~~~~~~~YP~Pivd~~~~~~  273 (279)
T d1np7a1         245 LSATEQKQWGVQLGVDYPRPCVNFHQSVE  273 (279)
T ss_dssp             CCHHHHHHTTCCBTTTBCCCSSCHHHHHH
T ss_pred             CCHHHHHHcCCCCCCCCCcccCCHHHHHH
Confidence                          489999999998654
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure