Citrus Sinensis ID: 044815
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 675 | 2.2.26 [Sep-21-2011] | |||||||
| P0C8Q3 | 701 | Pentatricopeptide repeat- | yes | no | 0.914 | 0.880 | 0.637 | 0.0 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.749 | 0.553 | 0.297 | 2e-65 | |
| Q9SFV9 | 880 | Pentatricopeptide repeat- | no | no | 0.628 | 0.481 | 0.315 | 1e-59 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.631 | 0.570 | 0.290 | 3e-59 | |
| Q9T0D6 | 566 | Pentatricopeptide repeat- | no | no | 0.552 | 0.659 | 0.320 | 6e-59 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.601 | 0.547 | 0.314 | 3e-58 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.706 | 0.525 | 0.280 | 2e-57 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.734 | 0.680 | 0.241 | 1e-55 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.682 | 0.631 | 0.272 | 5e-55 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.672 | 0.759 | 0.282 | 7e-55 |
| >sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/649 (63%), Positives = 490/649 (75%), Gaps = 32/649 (4%)
Query: 59 QSLVKTVCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALS 118
Q LVK+VCS+V SY +Q H+ SSP R+NL D +SLTHEQAITVVASLA+E+GSMVAL
Sbjct: 53 QCLVKSVCSLVCTSYLRQNHVVSSPHRVNLDFDANSLTHEQAITVVASLASESGSMVALC 112
Query: 119 FFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIE 178
FFYWA+GF KFRHFMRLY+V A SL++NGN ++AHEVM+CM+ +F+EIGRL E MV++
Sbjct: 113 FFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMD 172
Query: 179 MTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR 238
M N GL + T+N V+ IA ELGL+EYAE VFDEM RGV D+SSYKLMV+ R G+
Sbjct: 173 MQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGK 232
Query: 239 VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGF------------------------- 273
+ EADRWL+ M+ RG I DNAT TL++TA C+ G
Sbjct: 233 IQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTS 292
Query: 274 -------RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD 326
+GSIKQAFE+LEEMVR GWKPNVYTHT LIDGLCK+GWTEKAFRLFLKLVRSD
Sbjct: 293 LIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD 352
Query: 327 NYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERA 386
YKPNVHTYT+MI GYCKE+K+NRAEML RMKEQGL PN NTYT+LI GHCK G+F RA
Sbjct: 353 TYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRA 412
Query: 387 YDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSE 446
Y+LM+LMG EG PNIY YNA ID LCKK R EAYELL KAF L+AD +TYTIL+ E
Sbjct: 413 YELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQE 472
Query: 447 HLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT 506
KQ + QAL FCRM K G D+ LIAAFCRQKKMKESE+ FQ ++ GL PT
Sbjct: 473 QCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPT 532
Query: 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYE 566
KETYTSMI Y ++G+I A+KYF M + GC PD+ TYG+LISGLCK+S +DEAC+ YE
Sbjct: 533 KETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYE 592
Query: 567 SMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVG 626
+MI +G+SP EVTRVTLAYEYCK+ DSA AMI+LE LDKKLWIRTV TL+RKLCSEK+VG
Sbjct: 593 AMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRTLVRKLCSEKKVG 652
Query: 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
+AALFF KLL KD + DRV+LAA AC ES K L +DL++RI+ G+G
Sbjct: 653 VAALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVTDLTERISRGVG 701
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 164/552 (29%), Positives = 255/552 (46%), Gaps = 46/552 (8%)
Query: 116 ALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSM 175
AL+F +W +++H + Y T LI+NG ++ M+ S +G +
Sbjct: 106 ALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDL 165
Query: 176 VIEMTNN-----GLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMV 230
+M + LI N ++ GLV+ ++V+ EM VC + +Y MV
Sbjct: 166 CRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMV 225
Query: 231 VAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK 290
YC++G V EA++++S +++ G D T T LI +C R + AF++ EM K
Sbjct: 226 NGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQ---RKDLDSAFKVFNEMPLK 282
Query: 291 GWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNY---------------------- 328
G + N +T LI GLC ++A LF+K+ + +
Sbjct: 283 GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEA 342
Query: 329 ------------KPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYG 376
KPN+HTYT +I C + K +A LL +M E+GL+PN TY +LI G
Sbjct: 343 LNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALING 402
Query: 377 HCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQAD 436
+CK G E A D+++LM +PN YN +I G C K V +A +L K +R++ D
Sbjct: 403 YCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPD 461
Query: 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQ 496
+TY L+ + A L M GL PD YT++I + C+ K+++E+ F
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFD 521
Query: 497 EAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS 556
G+ P YT++I GY + G + A ++M C P+++T+ ALI GLC
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581
Query: 557 KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESL---DKKLWIRTVN 613
KL EA E M+ G+ P T L + K GD A + + K T
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYT 641
Query: 614 TLIRKLCSEKRV 625
T I+ C E R+
Sbjct: 642 TFIQTYCREGRL 653
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 236/469 (50%), Gaps = 45/469 (9%)
Query: 170 KEGFSMVIEMTNNGLPLITSTLNRVVGIACELGL-----VEYAEEVFDEMCARGVCADAS 224
K G++ EM + + I L+ +G + LG + A +VFD M CA S
Sbjct: 207 KNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNS 266
Query: 225 -SYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFEL 283
SY +++ C +GR+ EA M ++G T T+LI A CD RG I +AF L
Sbjct: 267 VSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCD---RGLIDKAFNL 323
Query: 284 LEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYC 343
+EM+ +G KPNV+T+TVLIDGLC+ G E+A + K+V+ D P+V TY A+I+GYC
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVK-DRIFPSVITYNALINGYC 382
Query: 344 KEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIY 403
K+ ++ A LL M+++ PN T+ L+ G C+VG +A L+ M G +P+I
Sbjct: 383 KDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIV 442
Query: 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRM 463
+YN +IDGLC++G + AY+LL +++ D +T+T +++ KQ + A M
Sbjct: 443 SYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLM 502
Query: 464 VKAGLNPDIHAYTTLIAAFCRQK-----------------------------------KM 488
++ G++ D TTLI C+ K+
Sbjct: 503 LRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKV 562
Query: 489 KESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGAL 548
KE + GL P+ TYT+++ G +R G+I+ + + + M GC P+ Y +
Sbjct: 563 KEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTII 622
Query: 549 ISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAM 597
I+GLC+ +++EA + +M G+SP VT + Y G A+
Sbjct: 623 INGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRAL 671
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 224/447 (50%), Gaps = 21/447 (4%)
Query: 204 VEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTL 263
+ +AE VF EM V + +Y +++ +C G + A M +G + + T
Sbjct: 186 ISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNT 245
Query: 264 LITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLV 323
LI +C I F+LL M KG +PN+ ++ V+I+GLC++G ++ + ++
Sbjct: 246 LIDGYCK---LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302
Query: 324 RSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNF 383
R Y + TY +I GYCKE ++A ++ M GL P+ TYTSLI+ CK GN
Sbjct: 303 RR-GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
Query: 384 ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTIL 443
RA + +D M G PN Y ++DG +KG + EAY +L++ +TY L
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 444 LSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL 503
++ H + + A+ + M + GL+PD+ +Y+T+++ FCR + E+ + +E + G+
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 504 FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQ 563
P TY+S+I G+ A ++ M ++G PD TY ALI+ C + L++A Q
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541
Query: 564 FYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEK 623
+ M+ KG+ P D T +++ L+K+ R L+ KL E+
Sbjct: 542 LHNEMVEKGVLP----------------DVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585
Query: 624 RVGMAALFFHKLLGKDQNVDRVSLAAL 650
V + + +H L+ N++ S+ +L
Sbjct: 586 SVP-SDVTYHTLIENCSNIEFKSVVSL 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 121/377 (32%), Positives = 201/377 (53%), Gaps = 4/377 (1%)
Query: 199 CELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDN 258
CE G +E + ++ E+ G + Y ++ C+ G + +A M G + +
Sbjct: 174 CEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANE 233
Query: 259 ATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRL 318
T T+LI G + KQ FE+ E+M G PN+YT+ +++ LCK G T+ AF++
Sbjct: 234 RTYTVLINGLFKNGVK---KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQV 290
Query: 319 FLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC 378
F ++ R N+ TY +I G C+E K+N A ++++MK G+ PN TY +LI G C
Sbjct: 291 FDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFC 349
Query: 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI 438
VG +A L + G +P++ YN ++ G C+KG A +++K+ +R ++ K+
Sbjct: 350 GVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKV 409
Query: 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA 498
TYTIL+ + ++A+ L M + GL PD+H Y+ LI FC + +M E+ + F+
Sbjct: 410 TYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM 469
Query: 499 ITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL 558
+ P + Y +MI GY ++G+ A+K + M + AP+ +Y +I LCK+ K
Sbjct: 470 VEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKS 529
Query: 559 DEACQFYESMIGKGISP 575
EA + E MI GI P
Sbjct: 530 KEAERLVEKMIDSGIDP 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 211/410 (51%), Gaps = 4/410 (0%)
Query: 165 EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADAS 224
++GR+KE +++ M G + + VV C G ++ ++ + M +G+ ++
Sbjct: 258 QLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSY 317
Query: 225 SYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELL 284
Y ++ CR+ ++ EA+ S M+ +G + D T LI FC RG I+ A +
Sbjct: 318 IYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK---RGDIRAASKFF 374
Query: 285 EEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK 344
EM + P+V T+T +I G C+ G +A +LF ++ +P+ T+T +I+GYCK
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF-CKGLEPDSVTFTELINGYCK 433
Query: 345 EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYA 404
M A + M + G PN TYT+LI G CK G+ + A +L+ M K G PNI+
Sbjct: 434 AGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT 493
Query: 405 YNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV 464
YN+I++GLCK G ++EA +L+ + L AD +TYT L+ + K E +A + M+
Sbjct: 494 YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEML 553
Query: 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNIS 524
GL P I + L+ FC +++ EK + G+ P T+ S++ Y N+
Sbjct: 554 GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLK 613
Query: 525 SAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGIS 574
+A ++ M G PD TY L+ G CK + EA ++ M GKG S
Sbjct: 614 AATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFS 663
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/521 (28%), Positives = 241/521 (46%), Gaps = 44/521 (8%)
Query: 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEM 214
V ++ S + + E + M GL T + ++ + C G ++ A EM
Sbjct: 369 VYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEM 428
Query: 215 CARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFR 274
G+ Y ++ +C+ G ++ A+ +++ M+++ T T L+ +C KG
Sbjct: 429 VDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKG-- 486
Query: 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHT 334
I +A L EM KG P++YT T L+ GL + G A +LF ++ N KPN T
Sbjct: 487 -KINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEW-NVKPNRVT 544
Query: 335 YTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMG 394
Y MI GYC+E M++A L+ M E+G++P+T +Y LI+G C G A +D +
Sbjct: 545 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLH 604
Query: 395 KEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454
K C N Y ++ G C++G+++EA + ++ QR + D + Y +L+ LK + K
Sbjct: 605 KGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRK 664
Query: 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514
GL M GL PD YT++I A + KE+ + I G P + TYT++I
Sbjct: 665 LFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724
Query: 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGA--------------------------- 547
G + G ++ A +M + P+ +TYG
Sbjct: 725 NGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLL 784
Query: 548 --------LISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMII 599
LI G C+Q +++EA + MIG G+SP +T T+ E C++ D A+ +
Sbjct: 785 ANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 844
Query: 600 LESLDKKLWIR----TVNTLIRKLCSEKRVGMAALFFHKLL 636
S+ +K IR NTLI C +G A +++L
Sbjct: 845 WNSMTEK-GIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/538 (24%), Positives = 260/538 (48%), Gaps = 42/538 (7%)
Query: 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEM 214
V ++ ++ + +L+E + + G + N ++G +G VE A V+ E+
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 215 CARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFR 274
GV + + +MV A C+ G++ + +LS + ++G D T LI+A+ KG
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL- 285
Query: 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD-------- 326
+++AFEL+ M KG+ P VYT+ +I+GLCK G E+A +F +++RS
Sbjct: 286 --MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 327 --------------------------NYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKE 360
+ P++ +++M+S + + +++A M +KE
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 361 QGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQE 420
GL+P+ YT LI G+C+ G A +L + M ++GC ++ YN I+ GLCK+ + E
Sbjct: 404 AGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE 463
Query: 421 AYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIA 480
A +L + +R L D T TIL+ H K + A+ LF +M + + D+ Y TL+
Sbjct: 464 ADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523
Query: 481 AFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP 540
F + + +++ + + ++ + PT +Y+ ++ G+++ A + + M P
Sbjct: 524 GFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKP 583
Query: 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIIL 600
+ ++I G C+ + F E MI +G P ++ TL Y + ++ + + A ++
Sbjct: 584 TVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLV 643
Query: 601 ESLDKKLW-----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653
+ ++++ + T N+++ C + ++ A + K++ + N DR + + N
Sbjct: 644 KKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMING 701
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 131/481 (27%), Positives = 233/481 (48%), Gaps = 20/481 (4%)
Query: 178 EMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMG 237
+M + +P T V+ C + ++ A + +M G ++ Y+ ++ + +
Sbjct: 207 DMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCN 266
Query: 238 RVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVY 297
RV EA + L M G + D T +I C I +A +++ M+ +G+ P+
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCK---FDRINEAAKMVNRMLIRGFAPDDI 323
Query: 298 THTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLER 357
T+ L++GLCK G + A LF ++ KP + + +I G+ +++ A+ +L
Sbjct: 324 TYGYLMNGLCKIGRVDAAKDLFYRIP-----KPEIVIFNTLIHGFVTHGRLDDAKAVLSD 378
Query: 358 M-KEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416
M G++P+ TY SLIYG+ K G A +++ M +GC PN+Y+Y ++DG CK G
Sbjct: 379 MVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLG 438
Query: 417 RVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYT 476
++ EAY +L + L+ + + + L+S K+ +A+ +F M + G PD++ +
Sbjct: 439 KIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFN 498
Query: 477 TLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI 536
+LI+ C ++K + ++ I+ G+ TY ++I +LR G I A K M
Sbjct: 499 SLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQ 558
Query: 537 GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATA 596
G D ITY +LI GLC+ ++D+A +E M+ G +P ++ L C+ G A
Sbjct: 559 GSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEA 618
Query: 597 MIILESLDKKLWIR-------TVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAA 649
+ K++ +R T N+LI LC R+ F KL + D V+
Sbjct: 619 V----EFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNT 674
Query: 650 L 650
L
Sbjct: 675 L 675
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 132/468 (28%), Positives = 233/468 (49%), Gaps = 14/468 (2%)
Query: 142 SLISNGNFERAHEVMQC--MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIAC 199
+++ +GN +++ C ++ F +G+ ++ ++ + +G T N ++ C
Sbjct: 127 NMVYHGNVP---DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYC 183
Query: 200 ELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNA 259
+ G + A V D M V D +Y ++ + C G++ +A L ML R D
Sbjct: 184 KAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240
Query: 260 TLTLLITAFC-DKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRL 318
T T+LI A C D G + A +LL+EM +G P+V T+ VL++G+CK+G ++A +
Sbjct: 241 TYTILIEATCRDSG----VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK- 295
Query: 319 FLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC 378
FL + S +PNV T+ ++ C + AE LL M +G P+ T+ LI C
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI 438
+ G RA D+++ M + GC PN +YN ++ G CK+ ++ A E L++ R D +
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA 498
TY +L+ K + + A+ + ++ G +P + Y T+I + K ++ K E
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475
Query: 499 ITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL 558
L P TY+S++ G R+G + A+K+F ++G P+ +T+ +++ GLCK +
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535
Query: 559 DEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK 606
D A F MI +G P E + L +G + A+ +L L K
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNK 583
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 675 | ||||||
| 224136626 | 715 | predicted protein [Populus trichocarpa] | 0.995 | 0.939 | 0.653 | 0.0 | |
| 255574927 | 712 | pentatricopeptide repeat-containing prot | 1.0 | 0.948 | 0.651 | 0.0 | |
| 356529971 | 693 | PREDICTED: pentatricopeptide repeat-cont | 0.96 | 0.935 | 0.638 | 0.0 | |
| 359472741 | 708 | PREDICTED: pentatricopeptide repeat-cont | 0.911 | 0.868 | 0.673 | 0.0 | |
| 147798989 | 708 | hypothetical protein VITISV_008458 [Viti | 0.911 | 0.868 | 0.672 | 0.0 | |
| 449455469 | 728 | PREDICTED: pentatricopeptide repeat-cont | 0.980 | 0.909 | 0.606 | 0.0 | |
| 449487696 | 1315 | PREDICTED: uncharacterized protein LOC10 | 0.905 | 0.464 | 0.648 | 0.0 | |
| 297800058 | 724 | predicted protein [Arabidopsis lyrata su | 0.911 | 0.849 | 0.636 | 0.0 | |
| 5738362 | 1302 | putative protein [Arabidopsis thaliana] | 0.914 | 0.473 | 0.637 | 0.0 | |
| 334186712 | 701 | Pentatricopeptide repeat domain-containi | 0.914 | 0.880 | 0.637 | 0.0 |
| >gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa] gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/718 (65%), Positives = 554/718 (77%), Gaps = 46/718 (6%)
Query: 1 MVSFHVLRSHGLRGKPSRTPSLTLFVIRSLCYQTHHHNFLANSKQPAFSSTSSSP-SPP- 58
M+SF L+ HGL+ KPS P ++ ++ LCY +H+ N ++ ++P SPP
Sbjct: 1 MLSFFTLKFHGLKAKPSLNP-VSYTPLKILCY--YHNTTDNNLDDNNINNGCNTPISPPP 57
Query: 59 -------QSLVKTVCSMVLESYYQQF-HLRS-SPPRLNLQIDIDSLTHEQAITVVASLAN 109
QSLV+++CS+V ESY QQ H+R P +NL ++ DSLTHEQAITVVASLA+
Sbjct: 58 QKQHLQQQSLVRSICSLVCESYSQQTPHVRLLQSPSINLSVNPDSLTHEQAITVVASLAS 117
Query: 110 EAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRL 169
EAGSMVALSFF WAIGF KFR+FMR YIVCATS I N NFERAHEVM CMV FAEIG+
Sbjct: 118 EAGSMVALSFFNWAIGFPKFRYFMRFYIVCATSFIGNENFERAHEVMDCMVRVFAEIGKF 177
Query: 170 KEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLM 229
+E +MVIEM N+GL L TLN V G+A E+GLV YAE VFDEM RGVC D+ SYKLM
Sbjct: 178 QEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSVSYKLM 237
Query: 230 VVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGF---------------- 273
+AYCRMGR+++ DRWL M+ RG ++DNAT TL+I+ FC+KGF
Sbjct: 238 AIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWVELGL 297
Query: 274 ----------------RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFR 317
RGSIKQAFE+LEEMV+KGWKPNVYTHT LIDGLCKKGWTEKAFR
Sbjct: 298 KPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFR 357
Query: 318 LFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGH 377
LFLKLVRSD+YKPNVHTYT+MI GYCKE+K+NRAEMLL RMKEQGL+PNT TYT LI GH
Sbjct: 358 LFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGH 417
Query: 378 CKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADK 437
K GNFE+AY+LMDLMGKEG + NI+ YNA ID LCKKGR EA +LLKK F+ LQAD
Sbjct: 418 SKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADT 477
Query: 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQE 497
+TYTIL+SE ++A+T++AL F +M KAG+ PD+H Y TLIAAF RQ++M+ESEK F E
Sbjct: 478 VTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAE 537
Query: 498 AITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSK 557
A+ GL PTKETYTSMICGY RD N+S A+K+F RM+ GC PD++TYGALISGLCK+SK
Sbjct: 538 AVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESK 597
Query: 558 LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIR 617
LDEACQ YE+M+ KG+SPCEVTR+TLAYEYCKQ DSATAM+ILE LDKKLWIRTVNTLIR
Sbjct: 598 LDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERLDKKLWIRTVNTLIR 657
Query: 618 KLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
KLCSE++VGMA LFFHKLL KDQNVDRV+L A ACYESNKYAL SDLS+RI++GIG
Sbjct: 658 KLCSERKVGMAVLFFHKLLDKDQNVDRVTLTAFTTACYESNKYALVSDLSERISKGIG 715
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/712 (65%), Positives = 550/712 (77%), Gaps = 37/712 (5%)
Query: 1 MVSFHVLRSHGLRGKPSRTPSLTLFVI----RSLCYQTH-HHNFLANSKQPAFSSTSSSP 55
M+S +L+S+G K S P+L ++ + + + TH + F+ S PA S +P
Sbjct: 1 MISLLILKSNGFPSKLSSPPTLYSPLLSLSSKFISFNTHGYTTFIPTSPLPASPPQSLAP 60
Query: 56 SPPQSLVKTVCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMV 115
PP+S V+++C +V ESY Q + S P LNL+I+ +SLTHEQ ITVVASLA EAGS+V
Sbjct: 61 PPPESSVRSICLLVCESYQQTSFSKPSSPSLNLEINPNSLTHEQVITVVASLAQEAGSVV 120
Query: 116 ALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSM 175
+LSFF W IGF+KFRHFMRLYIVCAT+ ++N N +RA EVMQCMV SF+EIG+LKE +M
Sbjct: 121 SLSFFNWVIGFSKFRHFMRLYIVCATTFLNNDNLDRATEVMQCMVRSFSEIGKLKEAVNM 180
Query: 176 VIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCR 235
VIEM N+GL L LN V+ +A LG V+YAE+VFDEM R V D++SYKLMVV YCR
Sbjct: 181 VIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCR 240
Query: 236 MGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFR--------------------- 274
MGR+++ DRWL M++RG +DNAT TL+I+ F +KGF
Sbjct: 241 MGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLIN 300
Query: 275 -----------GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLV 323
GSIKQAFE+LEEMVRKGWKPNVYTHT LIDGLCKKGWTEKAFRLFLKLV
Sbjct: 301 FSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLV 360
Query: 324 RSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNF 383
RSDNYKPNV+TYT MI+GYCKEEK+NRAEMLL RMKEQGL+PNTNTYT LI GHCK GNF
Sbjct: 361 RSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNF 420
Query: 384 ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTIL 443
RAY+LMDLMGKEG TPNI+ YNAIIDGLCKKGR EAY+LL++ + L ADK+TYTIL
Sbjct: 421 GRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTIL 480
Query: 444 LSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL 503
+SE +Q + KQAL +F RM K GL PD+H Y LIA FCRQKK++ESEK F+EA+ GL
Sbjct: 481 ISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGL 540
Query: 504 FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQ 563
PTKETYTSMICGY RDG+ISSA+K+F +M GC PD+ITYGALISGLC +SKLDEACQ
Sbjct: 541 LPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQ 600
Query: 564 FYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEK 623
YE+MI G+SPCEVTRVTLAYEYCKQGDSATAMIILE L+KKLWIRTVNTLIRKLCSEK
Sbjct: 601 LYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWIRTVNTLIRKLCSEK 660
Query: 624 RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
+VG+AALFFHKLL KD NVDR++LAA ACYESNK+AL SDLS+RI++GIG
Sbjct: 661 KVGVAALFFHKLLDKDLNVDRITLAAFTTACYESNKFALVSDLSERISKGIG 712
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19890-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/703 (63%), Positives = 537/703 (76%), Gaps = 55/703 (7%)
Query: 1 MVSFHVLRSHGLRGKPSRTPSLTLFVIRSLCYQTHHHNFLANSKQPAFSSTSSSPSPPQS 60
M+S +LR+H P R SL + ++L + T SPS QS
Sbjct: 1 MLSSVILRTHA---SPHRLTSLFILRTKTLTHIT-------------------SPSCVQS 38
Query: 61 LVKTVCSMVLESYYQQF-HLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALSF 119
V VCS+V +SY+ + H R SPP L+L +D +SLTH+QA+T+VASLA++AGSMVALSF
Sbjct: 39 TVTRVCSLVYDSYHHHYNHARFSPPTLHLDVDPNSLTHDQAVTIVASLASDAGSMVALSF 98
Query: 120 FYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEM 179
F WAI +KFRHF RLYI CA SLISN NFE+AHEVMQCMV SFAEIGR+KE MVIEM
Sbjct: 99 FNWAIASSKFRHFTRLYIACAASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEM 158
Query: 180 TNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRV 239
N GL T TLN VV I E+GLVEYAE +FDEMCARGV + SY++MVV YC++G V
Sbjct: 159 HNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNV 218
Query: 240 TEADRWLSAMLDRGAILDNATLTLLITAFCDKGF-------------------------- 273
E+DRWL M++RG ++DNATL+L++ FC+KGF
Sbjct: 219 LESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCM 278
Query: 274 ------RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN 327
RGS+KQAFE+LEEMV +GWKPNVYTHT LIDGLCKKGWTEKAFRLFLKLVRS+N
Sbjct: 279 IEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSEN 338
Query: 328 YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAY 387
+KPNV TYTAMISGYC++EKMNRAEMLL RMKEQGL PNTNTYT+LI GHCK GNFERAY
Sbjct: 339 HKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAY 398
Query: 388 DLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447
+LM++M +EG +PN+ YNAI+DGLCKKGRVQEAY++LK F+ L ADK+TYTIL+SEH
Sbjct: 399 ELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEH 458
Query: 448 LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK 507
KQAE KQAL LF +MVK+G+ PDIH+YTTLIA FCR+K+MKESE FF+EA+ GL PT
Sbjct: 459 CKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTN 518
Query: 508 ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567
+TYTSMICGY R+GN+ A+K+F RM+ GCA D+ITYGALISGLCKQSKLDEA Y++
Sbjct: 519 KTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDA 578
Query: 568 MIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGM 627
MI KG++PCEVTRVTLAYEYCK D +AM++LE L+KKLW+RTVNTL+RKLCSE++VGM
Sbjct: 579 MIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTVNTLVRKLCSERKVGM 638
Query: 628 AALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670
AALFFHKLL KD NV+RV++AA ACYESNKY L SDLS RI
Sbjct: 639 AALFFHKLLDKDPNVNRVTIAAFMTACYESNKYDLVSDLSARI 681
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19890-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/647 (67%), Positives = 518/647 (80%), Gaps = 32/647 (4%)
Query: 61 LVKTVCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALSFF 120
+V+T+CS+V +SYYQQ H+R +PP+L+L +D +SLTH+QAITVVASLA+EAGSMVALSF
Sbjct: 62 VVRTICSLVCQSYYQQTHVRFTPPKLHLPLDSESLTHDQAITVVASLADEAGSMVALSFL 121
Query: 121 YWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMT 180
YWAIGF KFRHFMRLYIV AT+LI N N ERA+EVMQCMV +FAE G+LKE +MV+EM
Sbjct: 122 YWAIGFPKFRHFMRLYIVSATALIGNKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQ 181
Query: 181 NNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVT 240
N GL T TLN V+ +A +GLVE AE +F EMC RGV D S+KLMVVA C MGRV
Sbjct: 182 NQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVL 241
Query: 241 EADRWLSAMLDRGAILDNATLTLLITAFCDKGF--------------------------- 273
EA+RWL+AM++RG I+DNAT TL+I AFC KG+
Sbjct: 242 EAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALI 301
Query: 274 -----RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNY 328
+GSIKQAFELLEEMVR+GWKPNVYTHT LIDGLCKKGWTEKAFRLFLKLVRSD Y
Sbjct: 302 NGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGY 361
Query: 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYD 388
KPNVHTYTAMI+GYCKE+K+NRAEMLL RM+EQGL+PNTNTYT+LI GHCKVGNF RAY+
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421
Query: 389 LMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHL 448
LMDLMGKEG +PNIY YNAIIDGLCKKG + EAY LL K LQAD +TYTIL+S H
Sbjct: 422 LMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHC 481
Query: 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE 508
+QA+T ++L F +M+K G PDIH+YTTLI+ FCRQK+MKESE+ F+EA++ GL PTK+
Sbjct: 482 RQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKK 541
Query: 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM 568
TYTSMICGY R GN S AVK FQRM+ GCAPD+ITYGALISGLCK+SKLD+A Y++M
Sbjct: 542 TYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAM 601
Query: 569 IGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMA 628
+ KG+SPCEVTR+TLAYEYCK+ DS+TA+ +L+ L+K+ WIRTVNTL+RKLCSE ++ MA
Sbjct: 602 MDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMA 661
Query: 629 ALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
ALFFHKLL K+ NV+RV+L N CYESNKY L S+LS+RI EGIG
Sbjct: 662 ALFFHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSERICEGIG 708
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/647 (67%), Positives = 518/647 (80%), Gaps = 32/647 (4%)
Query: 61 LVKTVCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALSFF 120
+V+T+CS+V +SYYQQ H+R +PP+L+L +D +SLTH+QAITVVASLA+EAGSMVALSF
Sbjct: 62 VVRTICSLVCQSYYQQTHVRFTPPKLHLPLDSESLTHDQAITVVASLADEAGSMVALSFL 121
Query: 121 YWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMT 180
YWAIGF KFRHFMRLYIV AT+LI N N ERA+EVMQCMV +FAE G+LKE +MV+EM
Sbjct: 122 YWAIGFPKFRHFMRLYIVSATALIGNKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQ 181
Query: 181 NNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVT 240
N GL T TLN V+ +A +GLVE AE +F EMC RGV D S+KLMVVA C MGRV
Sbjct: 182 NQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVL 241
Query: 241 EADRWLSAMLDRGAILDNATLTLLITAFCDKGF--------------------------- 273
EA++WL+AM++RG I+DNAT TL+I AFC KG+
Sbjct: 242 EAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALI 301
Query: 274 -----RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNY 328
+GSIKQAFELLEEMVR+GWKPNVYTHT LIDGLCKKGWTEKAFRLFLKLVRSD Y
Sbjct: 302 NGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGY 361
Query: 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYD 388
KPNVHTYTAMI+GYCKE+K+NRAEMLL RM+EQGL+PNTNTYT+LI GHCKVGNF RAY+
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421
Query: 389 LMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHL 448
LMDLMGKEG +PNIY YNAIIDGLCKKG + EAY LL K LQAD +TYTIL+S H
Sbjct: 422 LMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHC 481
Query: 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE 508
+QA+T ++L F +M+K G PDIH+YTTLI+ FCRQK+MKESE+ F+EA++ GL PTK+
Sbjct: 482 RQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKK 541
Query: 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM 568
TYTSMICGY R GN S AVK FQRM+ GCAPD+ITYGALISGLCK+SKLD+A Y++M
Sbjct: 542 TYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAM 601
Query: 569 IGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMA 628
+ KG+SPCEVTR+TLAYEYCK+ DS+TA+ +L+ L+K+ WIRTVNTL+RKLCSE ++ MA
Sbjct: 602 MDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMA 661
Query: 629 ALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
ALFFHKLL K+ NV+RV+L N CYESNKY L S+LS+RI EGIG
Sbjct: 662 ALFFHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSERICEGIG 708
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19890-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/715 (60%), Positives = 525/715 (73%), Gaps = 53/715 (7%)
Query: 1 MVSFHVLRSHGLRGK-------PSRTPSLTLFVIRSL-CYQTHHHNFLANSKQPAFSSTS 52
+ S +LR HG K S + SL F + HH+F ++S
Sbjct: 27 LASLRILRPHGFLQKLCSFQQGSSASASLAFFSSTHFDSISSPHHDFSSSSSL------- 79
Query: 53 SSPSPPQSLVKTVCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAG 112
QS +K +CS+VL++Y +Q HLR SP +LNL +D SLTHEQAI+ VA LA+E G
Sbjct: 80 ------QSPLKKICSLVLDTYLRQPHLRFSPSKLNLDMDAASLTHEQAISAVALLASEEG 133
Query: 113 SMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEG 172
SMVALSFFYWA+GF KFR+FMRLYIVC SL+ N ERAHEV++CMV FAEIG+LKE
Sbjct: 134 SMVALSFFYWAVGFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEA 193
Query: 173 FSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA 232
M+++M N GL L T +NR++ +A E+ LVEYA VFDEM ARGV D+ +YK ++V
Sbjct: 194 VDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVG 253
Query: 233 YCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGF------------------- 273
YCR G V EADRW+ M++RG ++DNATLTL+ITAFC+K
Sbjct: 254 YCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPN 313
Query: 274 -------------RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFL 320
RGS+KQAFELLEEMV+ GWKPNVYTHT LI GLCKKGWTE+AFRLFL
Sbjct: 314 LINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFL 373
Query: 321 KLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKV 380
KL+RSDNYKPNVHTYTAMISGYCKEEK++RAEML ERMKEQGL+PNTNTYT+LI GHCK
Sbjct: 374 KLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKA 433
Query: 381 GNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITY 440
GNF +AY+LM+LM EG PN YN+I+DGLCK+GR +EA++LL FQ +++AD +TY
Sbjct: 434 GNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTY 493
Query: 441 TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500
TIL+SE K+A+ QAL +M K G PDIH YTTLIAAFCRQ MK+SEK F E I
Sbjct: 494 TILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIK 553
Query: 501 AGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDE 560
GL PTKETYTSMICGY R+ +S AVK+FQ+M+ GCAPD+I+YGALISGLCK+S+LDE
Sbjct: 554 LGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDE 613
Query: 561 ACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLC 620
A Q Y++MI KG+SPCEVTRVTL YEYCK D A+AM+ILE L+KKLWIRTV+TLIRKLC
Sbjct: 614 ARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHTLIRKLC 673
Query: 621 SEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
EK+V +AALFFHKLL K+ NVDRV+LAA AC ESNKYAL SDLS+RI++GIG
Sbjct: 674 CEKKVALAALFFHKLLDKEVNVDRVTLAAFNTACIESNKYALVSDLSERISKGIG 728
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/643 (64%), Positives = 500/643 (77%), Gaps = 32/643 (4%)
Query: 65 VCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALSFFYWAI 124
+CS+VL++Y +Q HLR SP +LNL +D SLTHEQAI+ VA LA+E GSMVALSFFYWA+
Sbjct: 673 ICSLVLDTYLRQPHLRFSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVALSFFYWAV 732
Query: 125 GFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGL 184
GF KFR+FMRLYIVC SL+ N ERAHEV++CMV FAEIG+LKE M+++M N GL
Sbjct: 733 GFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMILDMRNQGL 792
Query: 185 PLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADR 244
L T +NR++ +A E+ LVEYA VFDEM ARGV D+ +YK ++V YCR G V EADR
Sbjct: 793 VLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADR 852
Query: 245 WLSAMLDRGAILDNATLTLLITAFCDKGF------------------------------- 273
W+ M++RG ++DNATLTL+ITAFC+K
Sbjct: 853 WICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLC 912
Query: 274 -RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 332
RGS+KQAFELLEEMV+ GWKPNVYTHT LI GLCKKGWTE+AFRLFLKL+RSDNYKPNV
Sbjct: 913 KRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNV 972
Query: 333 HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDL 392
HTYTAMISGYCKEEK++RAEML ERMKEQGL+PNTNTYT+LI GHCK GNF +AY+LM+L
Sbjct: 973 HTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMEL 1032
Query: 393 MGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452
M EG PN YN+I+DGLCK+GR +EA++LL FQ +++AD +TYTIL+SE K+A+
Sbjct: 1033 MSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRAD 1092
Query: 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS 512
QAL +M K G PDIH YTTLIAAFCRQ MK+SEK F E I GL PTKETYTS
Sbjct: 1093 MNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTS 1152
Query: 513 MICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572
MICGY R+ +S AVK+FQ+M+ GCAPD+I+YGALISGLCK+S+LDEA Q Y++MI KG
Sbjct: 1153 MICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKG 1212
Query: 573 ISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFF 632
+SPCEVTRVTL YEYCK D A+AM+ILE L+KKLWIRTV+TLIRKLC EK+V +AALFF
Sbjct: 1213 LSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHTLIRKLCCEKKVALAALFF 1272
Query: 633 HKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
HKLL K+ NVDRV+LAA AC ESNKYAL SDLS+RI++GIG
Sbjct: 1273 HKLLDKEVNVDRVTLAAFNTACIESNKYALVSDLSERISKGIG 1315
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/647 (63%), Positives = 492/647 (76%), Gaps = 32/647 (4%)
Query: 61 LVKTVCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALSFF 120
LVK+VCS+V SY +Q H+ SP R+NL D +SLTHEQAITVVASLA+E+GSMVAL FF
Sbjct: 78 LVKSVCSLVYNSYLRQNHVIQSPHRVNLDFDANSLTHEQAITVVASLASESGSMVALCFF 137
Query: 121 YWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMT 180
YWA+GF KFRHFMRLY+V A SLI+NGN ++AHEVM+CM+ +F+EIGRL E MV++M
Sbjct: 138 YWAVGFEKFRHFMRLYLVTADSLIANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQ 197
Query: 181 NNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVT 240
N GL + T+N V+ IA E GL++YAE VFDEM RGVC D+SS+KLMV+ R G++
Sbjct: 198 NQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQ 257
Query: 241 EADRWLSAMLDRGAILDNATLTLLITAFCDKGF--------------------------- 273
EADRWLS M+ RG I DNAT TL+++A C+ G
Sbjct: 258 EADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLI 317
Query: 274 -----RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNY 328
+GSIKQAFE+LEEMVR GWKPNVYTHT LIDGLCK+GWTEKAFRLFLKLVRSD Y
Sbjct: 318 DGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIY 377
Query: 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYD 388
KPNVHTYT+MI GYCKE+K+NRAEML RMKEQGL PN NTYT+LI GHCK GNF+RAY+
Sbjct: 378 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYE 437
Query: 389 LMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHL 448
LM+LM EG PNIY YNA+ID LCKK R EAYELL KAF L+AD +TYTIL+ E
Sbjct: 438 LMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQC 497
Query: 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE 508
KQ++ KQAL FCRM K G D+ LIAAFCRQKKMKESE+ FQ ++ GL PTKE
Sbjct: 498 KQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKE 557
Query: 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM 568
TYTSMI GY ++G+ A+KYF M + GC PD+ TYG+LISGLCK+S +DEAC+ YE+M
Sbjct: 558 TYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 617
Query: 569 IGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMA 628
I +G+SP EVTRVTLAYEYCK+ DSA+AMI+LE LDKKLWIRTV TL+RKLCSEK+VG+A
Sbjct: 618 IDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLEPLDKKLWIRTVRTLVRKLCSEKKVGVA 677
Query: 629 ALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
ALFF KLL KD + DRV+LAA AC ES K L +DL++RI+ G+G
Sbjct: 678 ALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVADLTERISRGVG 724
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana] gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/649 (63%), Positives = 490/649 (75%), Gaps = 32/649 (4%)
Query: 59 QSLVKTVCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALS 118
Q LVK+VCS+V SY +Q H+ SSP R+NL D +SLTHEQAITVVASLA+E+GSMVAL
Sbjct: 654 QCLVKSVCSLVCTSYLRQNHVVSSPHRVNLDFDANSLTHEQAITVVASLASESGSMVALC 713
Query: 119 FFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIE 178
FFYWA+GF KFRHFMRLY+V A SL++NGN ++AHEVM+CM+ +F+EIGRL E MV++
Sbjct: 714 FFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMD 773
Query: 179 MTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR 238
M N GL + T+N V+ IA ELGL+EYAE VFDEM RGV D+SSYKLMV+ R G+
Sbjct: 774 MQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGK 833
Query: 239 VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGF------------------------- 273
+ EADRWL+ M+ RG I DNAT TL++TA C+ G
Sbjct: 834 IQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTS 893
Query: 274 -------RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD 326
+GSIKQAFE+LEEMVR GWKPNVYTHT LIDGLCK+GWTEKAFRLFLKLVRSD
Sbjct: 894 LIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD 953
Query: 327 NYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERA 386
YKPNVHTYT+MI GYCKE+K+NRAEML RMKEQGL PN NTYT+LI GHCK G+F RA
Sbjct: 954 TYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRA 1013
Query: 387 YDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSE 446
Y+LM+LMG EG PNIY YNA ID LCKK R EAYELL KAF L+AD +TYTIL+ E
Sbjct: 1014 YELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQE 1073
Query: 447 HLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT 506
KQ + QAL FCRM K G D+ LIAAFCRQKKMKESE+ FQ ++ GL PT
Sbjct: 1074 QCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPT 1133
Query: 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYE 566
KETYTSMI Y ++G+I A+KYF M + GC PD+ TYG+LISGLCK+S +DEAC+ YE
Sbjct: 1134 KETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYE 1193
Query: 567 SMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVG 626
+MI +G+SP EVTRVTLAYEYCK+ DSA AMI+LE LDKKLWIRTV TL+RKLCSEK+VG
Sbjct: 1194 AMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRTLVRKLCSEKKVG 1253
Query: 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
+AALFF KLL KD + DRV+LAA AC ES K L +DL++RI+ G+G
Sbjct: 1254 VAALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVTDLTERISRGVG 1302
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/649 (63%), Positives = 490/649 (75%), Gaps = 32/649 (4%)
Query: 59 QSLVKTVCSMVLESYYQQFHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALS 118
Q LVK+VCS+V SY +Q H+ SSP R+NL D +SLTHEQAITVVASLA+E+GSMVAL
Sbjct: 53 QCLVKSVCSLVCTSYLRQNHVVSSPHRVNLDFDANSLTHEQAITVVASLASESGSMVALC 112
Query: 119 FFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIE 178
FFYWA+GF KFRHFMRLY+V A SL++NGN ++AHEVM+CM+ +F+EIGRL E MV++
Sbjct: 113 FFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMD 172
Query: 179 MTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR 238
M N GL + T+N V+ IA ELGL+EYAE VFDEM RGV D+SSYKLMV+ R G+
Sbjct: 173 MQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGK 232
Query: 239 VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGF------------------------- 273
+ EADRWL+ M+ RG I DNAT TL++TA C+ G
Sbjct: 233 IQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTS 292
Query: 274 -------RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD 326
+GSIKQAFE+LEEMVR GWKPNVYTHT LIDGLCK+GWTEKAFRLFLKLVRSD
Sbjct: 293 LIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD 352
Query: 327 NYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERA 386
YKPNVHTYT+MI GYCKE+K+NRAEML RMKEQGL PN NTYT+LI GHCK G+F RA
Sbjct: 353 TYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRA 412
Query: 387 YDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSE 446
Y+LM+LMG EG PNIY YNA ID LCKK R EAYELL KAF L+AD +TYTIL+ E
Sbjct: 413 YELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQE 472
Query: 447 HLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT 506
KQ + QAL FCRM K G D+ LIAAFCRQKKMKESE+ FQ ++ GL PT
Sbjct: 473 QCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPT 532
Query: 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYE 566
KETYTSMI Y ++G+I A+KYF M + GC PD+ TYG+LISGLCK+S +DEAC+ YE
Sbjct: 533 KETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYE 592
Query: 567 SMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVG 626
+MI +G+SP EVTRVTLAYEYCK+ DSA AMI+LE LDKKLWIRTV TL+RKLCSEK+VG
Sbjct: 593 AMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRTLVRKLCSEKKVG 652
Query: 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675
+AALFF KLL KD + DRV+LAA AC ES K L +DL++RI+ G+G
Sbjct: 653 VAALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVTDLTERISRGVG 701
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 675 | ||||||
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.825 | 0.608 | 0.294 | 1.7e-63 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.657 | 0.594 | 0.294 | 7.8e-60 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.552 | 0.659 | 0.320 | 4.2e-56 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.653 | 0.604 | 0.266 | 1.4e-54 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.672 | 0.759 | 0.282 | 2.6e-54 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.762 | 0.567 | 0.272 | 2.5e-53 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.737 | 0.652 | 0.279 | 2.1e-52 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.835 | 0.748 | 0.260 | 2.1e-52 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.605 | 0.642 | 0.281 | 9.2e-52 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.672 | 0.621 | 0.291 | 9.2e-52 |
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.7e-63, P = 1.7e-63
Identities = 168/571 (29%), Positives = 276/571 (48%)
Query: 82 SPPRLNLQIDIDSLTHEQAITVVASLAN-EAGSMVALSFFYWAIGFAKFRHFMRLYIVCA 140
S P + + S+ + + V+SL + + AL+F +W +++H + Y
Sbjct: 71 SKPNWHKSPSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLL 130
Query: 141 TSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNG-----LPLITSTLNRVV 195
T LI+NG ++ M+ S +G + +M + LI N ++
Sbjct: 131 TLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLL 190
Query: 196 GIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAI 255
GLV+ ++V+ EM VC + +Y MV YC++G V EA++++S +++ G
Sbjct: 191 NSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLD 250
Query: 256 LDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKA 315
D T T LI +C R + AF++ EM KG + N +T LI GLC ++A
Sbjct: 251 PDFFTYTSLIMGYCQ---RKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEA 307
Query: 316 FRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375
LF+K+ + D P V TYT +I C E+ + A L++ M+E G+ PN +TYT LI
Sbjct: 308 MDLFVKM-KDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLID 366
Query: 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA 435
C FE+A +L+ M ++G PN+ YNA+I+G CK+G +++A ++++ R+L
Sbjct: 367 SLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSP 426
Query: 436 DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFF 495
+ TY L+ + K + +A+G+ +M++ + PD+ Y +LI CR + +
Sbjct: 427 NTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485
Query: 496 QEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ 555
GL P + TYTSMI + + A F + Q G P+ + Y ALI G CK
Sbjct: 486 SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKA 545
Query: 556 SKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNT- 614
K+DEA E M+ K P +T L + C G A ++ E + K TV+T
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605
Query: 615 --LIRKLCSEKRVGMAALFFHKLLGKDQNVD 643
LI +L + A F ++L D
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPD 636
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 133/451 (29%), Positives = 226/451 (50%)
Query: 155 VMQCMVSSFAEIGRLKEGFSMV-IEMTNNGLPLITSTLNRVVGIACELGL-VEYAEEVFD 212
V +V S++ + + + S+V + + +P + S N V+ + +AE VF
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLS-YNAVLDATIRSKRNISFAENVFK 194
Query: 213 EMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKG 272
EM V + +Y +++ +C G + A M +G + + T LI +C
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK-- 252
Query: 273 FRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 332
R I F+LL M KG +PN+ ++ V+I+GLC++G ++ + ++ R Y +
Sbjct: 253 LR-KIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR-GYSLDE 310
Query: 333 HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDL 392
TY +I GYCKE ++A ++ M GL P+ TYTSLI+ CK GN RA + +D
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370
Query: 393 MGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452
M G PN Y ++DG +KG + EAY +L++ +TY L++ H +
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430
Query: 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS 512
+ A+ + M + GL+PD+ +Y+T+++ FCR + E+ + +E + G+ P TY+S
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490
Query: 513 MICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572
+I G+ A ++ M ++G PD TY ALI+ C + L++A Q + M+ KG
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550
Query: 573 ISPCEVTRVTLAYEYCKQGDSATAMIILESL 603
+ P VT L KQ + A +L L
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 121/377 (32%), Positives = 201/377 (53%)
Query: 199 CELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDN 258
CE G +E + ++ E+ G + Y ++ C+ G + +A M G + +
Sbjct: 174 CEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANE 233
Query: 259 ATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRL 318
T T+LI G + KQ FE+ E+M G PN+YT+ +++ LCK G T+ AF++
Sbjct: 234 RTYTVLINGLFKNGVK---KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQV 290
Query: 319 FLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC 378
F ++ R N+ TY +I G C+E K+N A ++++MK G+ PN TY +LI G C
Sbjct: 291 FDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFC 349
Query: 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI 438
VG +A L + G +P++ YN ++ G C+KG A +++K+ +R ++ K+
Sbjct: 350 GVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKV 409
Query: 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA 498
TYTIL+ + ++A+ L M + GL PD+H Y+ LI FC + +M E+ + F+
Sbjct: 410 TYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM 469
Query: 499 ITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL 558
+ P + Y +MI GY ++G+ A+K + M + AP+ +Y +I LCK+ K
Sbjct: 470 VEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKS 529
Query: 559 DEACQFYESMIGKGISP 575
EA + E MI GI P
Sbjct: 530 KEAERLVEKMIDSGIDP 546
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 119/447 (26%), Positives = 223/447 (49%)
Query: 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARG 218
++S+++ G ++E F ++ M G T N V+ C+ G E A+EVF EM G
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 219 VCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIK 278
+ D+++Y+ +++ C+ G V E ++ S M R + D + +++ F G ++
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSG---NLD 392
Query: 279 QAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAM 338
+A + G P+ +T+LI G C+KG A L ++++ +V TY +
Sbjct: 393 KALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ-GCAMDVVTYNTI 451
Query: 339 ISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGC 398
+ G CK + + A+ L M E+ L P++ T T LI GHCK+GN + A +L M ++
Sbjct: 452 LHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRI 511
Query: 399 TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALG 458
++ YN ++DG K G + A E+ +E+ I+Y+IL++ + +A
Sbjct: 512 RLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFR 571
Query: 459 LFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYL 518
++ M+ + P + ++I +CR + E F ++ I+ G P +Y ++I G++
Sbjct: 572 VWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFV 631
Query: 519 RDGNISSAVKYFQRMN--QIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576
R+ N+S A ++M Q G PD TY +++ G C+Q+++ EA MI +G++P
Sbjct: 632 REENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691
Query: 577 EVTRVTLAYEYCKQGDSATAMIILESL 603
T + + Q + A I + +
Sbjct: 692 RSTYTCMINGFVSQDNLTEAFRIHDEM 718
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 132/468 (28%), Positives = 233/468 (49%)
Query: 142 SLISNGNFERAHEVMQC--MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIAC 199
+++ +GN +++ C ++ F +G+ ++ ++ + +G T N ++ C
Sbjct: 127 NMVYHGNVP---DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYC 183
Query: 200 ELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNA 259
+ G + A V D M V D +Y ++ + C G++ +A L ML R D
Sbjct: 184 KAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240
Query: 260 TLTLLITAFC-DKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRL 318
T T+LI A C D G + A +LL+EM +G P+V T+ VL++G+CK+G ++A +
Sbjct: 241 TYTILIEATCRDSG----VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK- 295
Query: 319 FLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC 378
FL + S +PNV T+ ++ C + AE LL M +G P+ T+ LI C
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI 438
+ G RA D+++ M + GC PN +YN ++ G CK+ ++ A E L++ R D +
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA 498
TY +L+ K + + A+ + ++ G +P + Y T+I + K ++ K E
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475
Query: 499 ITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL 558
L P TY+S++ G R+G + A+K+F ++G P+ +T+ +++ GLCK +
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535
Query: 559 DEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK 606
D A F MI +G P E + L +G + A+ +L L K
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNK 583
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 2.5e-53, P = 2.5e-53
Identities = 143/525 (27%), Positives = 251/525 (47%)
Query: 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEM 214
V ++ S + + E + M GL T + ++ + C G ++ A EM
Sbjct: 369 VYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEM 428
Query: 215 CARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFR 274
G+ Y ++ +C+ G ++ A+ +++ M+++ T T L+ +C KG
Sbjct: 429 VDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKG-- 486
Query: 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHT 334
I +A L EM KG P++YT T L+ GL + G A +LF ++ N KPN T
Sbjct: 487 -KINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEW-NVKPNRVT 544
Query: 335 YTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMG 394
Y MI GYC+E M++A L+ M E+G++P+T +Y LI+G C G A +D +
Sbjct: 545 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLH 604
Query: 395 KEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454
K C N Y ++ G C++G+++EA + ++ QR + D + Y +L+ LK + K
Sbjct: 605 KGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRK 664
Query: 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514
GL M GL PD YT++I A + KE+ + I G P + TYT++I
Sbjct: 665 LFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724
Query: 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK-QSKLDEACQFYESMIGKGI 573
G + G ++ A +M + P+ +TYG + L K + + +A + + +++ KG+
Sbjct: 725 NGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAIL-KGL 783
Query: 574 SPCEVTRVTLAYEYCKQG--DSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAAL 630
T L +C+QG + A+ +I D T T+I +LC V A
Sbjct: 784 LANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIE 843
Query: 631 FFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDL-SQRIAEGI 674
++ + K DRV+ L + C + + ++L ++ + +G+
Sbjct: 844 LWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGL 888
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 146/523 (27%), Positives = 245/523 (46%)
Query: 136 YIVCATSLISNGNFERAHEVMQCM---------------VSSFAEIGRLKEGFSMVIEMT 180
Y + L+ +G F++AH+V M + SF + R ++ M+
Sbjct: 114 YNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMS 173
Query: 181 NNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVT 240
+ G + VVG E E+F +M A GV S++ ++ C+ G V
Sbjct: 174 SQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVK 233
Query: 241 EADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHT 300
E ++ L ++ RG + + T L I C RG + A ++ ++ +G KP+V T+
Sbjct: 234 ECEKLLDKVIKRGVLPNLFTYNLFIQGLCQ---RGELDGAVRMVGCLIEQGPKPDVITYN 290
Query: 301 VLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKE 360
LI GLCK ++A ++L + ++ +P+ +TY +I+GYCK + AE ++
Sbjct: 291 NLIYGLCKNSKFQEA-EVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVF 349
Query: 361 QGLLPNTNTYTSLIYGHCKVGNFERAYDLM-DLMGKEGCTPNIYAYNAIIDGLCKKGRVQ 419
G +P+ TY SLI G C G RA L + +GK G PN+ YN +I GL +G +
Sbjct: 350 NGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK-GIKPNVILYNTLIKGLSNQGMIL 408
Query: 420 EAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLI 479
EA +L + ++ L + T+ IL++ K A GL M+ G PDI + LI
Sbjct: 409 EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468
Query: 480 AAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCA 539
+ Q KM+ + + + G+ P TY S++ G + ++ ++ M + GCA
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528
Query: 540 PDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMII 599
P+ T+ L+ LC+ KLDEA E M K ++P VT TL +CK GD A +
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588
Query: 600 LESLDKKLWIR----TVNTLIRKLCSEKRVGMAALFFHKLLGK 638
+++ + T N +I + V MA F +++ +
Sbjct: 589 FRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR 631
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 154/592 (26%), Positives = 273/592 (46%)
Query: 74 YQQFHLRSSPPRLNLQIDI--DSLTHEQAITVVASLANEAGSMVALSFFYWAIGFAKFRH 131
+ F L +PP + + + ++ SL ++ AL F A F
Sbjct: 22 HHSFSLNLTPPSSTISFASPHSAALSSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSP 81
Query: 132 FMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGR-----LKEGFSM---------VI 177
LY L +G+F+ ++++ M SS E+G L E ++ V+
Sbjct: 82 EPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVV 141
Query: 178 E-MTNN-GLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCR 235
+ M + GL T NR++ + + ++ E +M G+ D S++ +++ A CR
Sbjct: 142 DWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCR 201
Query: 236 MGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKG--WK 293
++ A L M G + D T T ++ + ++G + A + E+MV G W
Sbjct: 202 AHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG---DLDGALRIREQMVEFGCSWS 258
Query: 294 PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEM 353
NV + V++ G CK+G E A ++ D + P+ +T+ +++G CK + A
Sbjct: 259 -NVSVN-VIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 354 LLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLC 413
+++ M ++G P+ TY S+I G CK+G + A +++D M C+PN YN +I LC
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376
Query: 414 KKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH 473
K+ +V+EA EL + + + D T+ L+ + A+ LF M G PD
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF 436
Query: 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRM 533
Y LI + C + K+ E+ ++ +G + TY ++I G+ + A + F M
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM 496
Query: 534 NQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593
G + +++TY LI GLCK ++++A Q + MI +G P + T +L +C+ GD
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556
Query: 594 ATAMIILESLDKKLW---IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642
A I++++ I T TLI LC RV +A+ + K N+
Sbjct: 557 KKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 117/416 (28%), Positives = 215/416 (51%)
Query: 213 EMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKG 272
+M +G+ + + +M+ +CR ++ A + ++ G + T + LI C
Sbjct: 113 QMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLC--- 169
Query: 273 FRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 332
G + +A EL++ MV G KP++ T L++GLC G +A L K+V +PN
Sbjct: 170 LEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEY-GCQPNA 228
Query: 333 HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDL 392
TY +++ CK + A LL +M+E+ + + Y+ +I G CK G+ + A++L +
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE 288
Query: 393 MGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452
M +G T NI YN +I G C GR + +LL+ +R++ + +T+++L+ +K+ +
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348
Query: 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS 512
++A L M+ G+ PD YT+LI FC++ + ++ + ++ G P T+
Sbjct: 349 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 408
Query: 513 MICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572
+I GY + I ++ F++M+ G D +TY LI G C+ KL+ A + ++ M+ +
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 573 ISPCEVTRVTLAYEYCKQGDSATAMIILESLDK---KLWIRTVNTLIRKLCSEKRV 625
+ P VT L C G+S A+ I E ++K +L I N +I +C+ +V
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 524
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 136/466 (29%), Positives = 229/466 (49%)
Query: 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARG 218
++ +F + + S++ +MT +G + ++ + V A ++ +EM G
Sbjct: 223 VMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMG 282
Query: 219 VCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIK 278
DA ++ +++ C+ R+ EA + ++ ML RG D+ T L+ C G + K
Sbjct: 283 CVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAK 342
Query: 279 QAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAM 338
F + KP + LI G G + A + +V S P+V TY ++
Sbjct: 343 DLFYRIP-------KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSL 395
Query: 339 ISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGC 398
I GY KE + A +L M+ +G PN +YT L+ G CK+G + AY++++ M +G
Sbjct: 396 IYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGL 455
Query: 399 TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALG 458
PN +N +I CK+ R+ EA E+ ++ ++ + D T+ L+S + E K AL
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515
Query: 459 LFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE-TYTSMICGY 517
L M+ G+ + Y TLI AF R+ ++KE+ K E + G P E TY S+I G
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS-PLDEITYNSLIKGL 574
Query: 518 LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE 577
R G + A F++M + G AP NI+ LI+GLC+ ++EA +F + M+ +G +P
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 634
Query: 578 VTRVTLAYEYCKQGDSATAMIILESLDKK-LWIRTV--NTLIRKLC 620
VT +L C+ G + + L + + TV NTL+ LC
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C8Q3 | PP326_ARATH | No assigned EC number | 0.6379 | 0.9140 | 0.8801 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 675 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 76/338 (22%), Positives = 144/338 (42%), Gaps = 43/338 (12%)
Query: 262 TLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLK 321
T LI+ C K G + FE+ EMV G + NV+T LIDG + G KAF +
Sbjct: 476 TTLIST-CAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY-G 531
Query: 322 LVRSDNYKPNV------------------------------------H-TYTAMISGYCK 344
++RS N KP+ H T A++
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 345 EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYA 404
+++RA+ + + + E + YT + + G+++ A + D M K+G P+
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 405 YNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV 464
++A++D G + +A+E+L+ A ++ ++ ++Y+ L+ K+AL L+ +
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNIS 524
L P + LI A C ++ ++ + E GL P TY+ ++ R +
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 525 SAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEAC 562
+ + + G P+ + + GLC + + ++AC
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCIT-GLCLR-RFEKAC 807
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 5e-20
Identities = 95/411 (23%), Positives = 180/411 (43%), Gaps = 20/411 (4%)
Query: 275 GSIKQAFELLEEMVRKGW--KPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 332
G IK +LLE+M ++G +Y H K+ ++AFR F KL+R+ P +
Sbjct: 384 GRIKDCIDLLEDMEKRGLLDMDKIY-HAKFFKACKKQRAVKEAFR-FAKLIRN----PTL 437
Query: 333 HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDL 392
T+ ++S + ++ A +L ++E GL + YT+LI K G + +++
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 393 MGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452
M G N++ + A+IDG + G+V +A+ + ++ D++ + L+S +
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 453 TKQALGLFCRMVKAG---LNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKET 509
+A + M KA ++PD L+ A ++ +++ +Q + T E
Sbjct: 558 VDRAFDVLAEM-KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 510 YTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMI 569
YT + + G+ A+ + M + G PD + + AL+ LD+A + +
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 570 GKGISPCEVTRVTLAYEYCKQGDSATAMIILE---SLDKKLWIRTVNTLIRKLCSEKRV- 625
+GI V+ +L + A+ + E S+ + + T+N LI LC ++
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 626 -GMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDL-SQRIAEGI 674
+ L K LG N ++ + L A + + DL SQ +GI
Sbjct: 737 KALEVLSEMKRLGLCPNT--ITYSILLVASERKDDADVGLDLLSQAKEDGI 785
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 4e-18
Identities = 94/433 (21%), Positives = 168/433 (38%), Gaps = 65/433 (15%)
Query: 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACE-LGLVEYAEEVFDEMCAR 217
M+S + E G EG + M + T+ V+ ACE LG E+ +
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-SACELLGDERLGREMHGYVVKT 317
Query: 218 GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFR--- 274
G D S ++ Y +G EA++ S M + D + T +I+ + G
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKA 373
Query: 275 -----------------------------GSIKQAFELLEEMVRKGWKPNVYTHTVLIDG 305
G + +L E RKG V LI+
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 306 LCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP 365
K +KA +F + D V ++T++I+G + A + +M L P
Sbjct: 434 YSKCKCIDKALEVFHNIPEKD-----VISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKP 487
Query: 366 NTNTYTSLIYGHCKVGNFE-----RAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQE 420
N+ T + + ++G A+ L +G +G PN A++D + GR+
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNY 542
Query: 421 AYELLKKAFQRELQA-DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLI 479
A+ Q D +++ ILL+ ++ + A+ LF RMV++G+NPD + +L+
Sbjct: 543 AWN------QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
Query: 480 AAFCRQKKMKESEKFFQE-AITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGC 538
A R + + ++F + P + Y ++ R G ++ A + +M
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---I 653
Query: 539 APDNITYGALISG 551
PD +GAL++
Sbjct: 654 TPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-17
Identities = 80/367 (21%), Positives = 143/367 (38%), Gaps = 54/367 (14%)
Query: 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITS--TLNRVVGIACELGLVEYAEEVFD 212
V ++S+ + G + F ++ EM P+ T+ ++ G V+ A+EV+
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 213 EMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKG 272
+ + Y + V + + G A M +G D + L+ G
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV---AG 660
Query: 273 FRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 332
G + +AFE+L++ ++G K +++ L+ +KA L+ ++S +P V
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED-IKSIKLRPTV 719
Query: 333 HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDL 392
T A+I+ C+ ++ +A +L MK GL PNT TY+ L+ + + + DL+
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
Query: 393 MGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452
++G PN+ I GLC L++ E
Sbjct: 780 AKEDGIKPNLVMCRCIT-GLC----------------------------------LRRFE 804
Query: 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS 512
ALG +G P I K + ++E I+AG PT E S
Sbjct: 805 KACALGEPVVSFDSG-RPQI-----------ENKWTSWALMVYRETISAGTLPTMEV-LS 851
Query: 513 MICGYLR 519
+ G L+
Sbjct: 852 QVLGCLQ 858
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 3e-17
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK 379
P+V TY +I GYCK+ K+ A L MK++G+ PN TY+ LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 2e-16
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 365 PNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCK 414
P+ TY +LI G+CK G E A L + M K G PN+Y Y+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 107/463 (23%), Positives = 198/463 (42%), Gaps = 32/463 (6%)
Query: 199 CELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR-VTEADRWLSAMLDR----G 253
C G +E A ++ + M V D +Y + + C R V E R S L G
Sbjct: 62 CSHGQLEQALKLLESMQELRVPVDEDAY-VALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 254 AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTE 313
L NA L++ + G + A+ + +M + ++++ VL+ G K G+ +
Sbjct: 121 VRLGNAMLSMFVRF-------GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFD 169
Query: 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSL 373
+A L+ +++ + +P+V+T+ ++ + R + + G + + +L
Sbjct: 170 EALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228
Query: 374 IYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL 433
I + K G+ A + D M + C ++NA+I G + G E EL + +
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEK 493
D +T T ++S + + + +VK G D+ +LI + E+EK
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 494 FFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553
F T ++T+MI GY ++G A++ + M Q +PD IT +++S
Sbjct: 345 VFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400
Query: 554 KQSKLDEACQFYESMIGKG-ISPCEVTRVTL-AYEYCKQGDSATAMIILESLDKKLWIRT 611
LD + +E KG IS V + Y CK D A+ + ++ +K I +
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK--ALEVFHNIPEKDVI-S 457
Query: 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC 654
++I L R A +FF ++L + + V+L A +AC
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQMLLTLKP-NSVTLIAALSAC 499
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-15
Identities = 79/370 (21%), Positives = 146/370 (39%), Gaps = 17/370 (4%)
Query: 303 IDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQG 362
I+ L G +A LF L + TY A++ + + + + ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 363 LLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAY 422
P+ ++ H K G A L D M + N+ ++ II GL G +EA+
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAF 209
Query: 423 ELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF 482
L ++ ++ A+ T+ ++L + L C ++K G+ D LI +
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 483 CRQKKMKESEKFFQEAITAGLFPTKET--YTSMICGYLRDGNISSAVKYFQRMNQIGCAP 540
+ ++++ F P K T + SM+ GY G A+ + M G +
Sbjct: 270 SKCGDIEDARCVFDG------MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIIL 600
D T+ +I + + L+ A Q + +I G V L Y K G A +
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 601 ESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKY 660
+ + +K I + N LI + R A F +++ + + V+ A+ +AC +Y
Sbjct: 384 DRMPRKNLI-SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC----RY 438
Query: 661 ALFSDLSQRI 670
+ S+ I
Sbjct: 439 SGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 83/360 (23%), Positives = 154/360 (42%), Gaps = 42/360 (11%)
Query: 222 DASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLT--LLITAFCDKGFRGSIKQ 279
AS+Y +V A + + + G D + LL+ C G +
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC-----GMLID 176
Query: 280 AFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMI 339
A L +EM + N+ + +I GL G +AF LF + + D T+ M+
Sbjct: 177 ARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALF-REMWEDGSDAEPRTFVVML 231
Query: 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCT 399
+ L + + G++ +T +LI + K G+ E A + D M ++
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK--- 288
Query: 400 PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLS--------EHLKQA 451
A+N+++ G G +EA L + + D+ T++I++ EH KQA
Sbjct: 289 -TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE--T 509
+++ G DI A T L+ + + +M+++ F P K +
Sbjct: 348 HAG--------LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR------MPRKNLIS 393
Query: 510 YTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL-DEACQFYESM 568
+ ++I GY G + AV+ F+RM G AP+++T+ A++S C+ S L ++ + ++SM
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 4e-15
Identities = 118/599 (19%), Positives = 223/599 (37%), Gaps = 56/599 (9%)
Query: 17 SRTPSLTLFVIRSLCYQTHHHNFLANSKQPAFSSTSSSPSPPQSLVKTVCSMVLESYYQQ 76
+R S+ L IR + FS P S CS V + +
Sbjct: 6 ARYQSIRLDEIRDSLSNPRLLHS-----PRKFSLRGRRTKTPFS--SISCSSVEQGLKPR 58
Query: 77 FHLRSSPPRLNLQIDIDSLTHEQAITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLY 136
L+ P R+ + D+ + I S + + L + +
Sbjct: 59 PRLKPEPIRIEVSESKDARLDDTQIR--KSGVSLCSQIEKLVACG---RHREALELFEI- 112
Query: 137 IVCATSLISNGNFERAHEVMQCMVSSFA---EIGRLKEGFSMVIEMTNNGLPLITSTLNR 193
L + F +V + I +K + V ++G +NR
Sbjct: 113 ------LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE---SSGFEPDQYMMNR 163
Query: 194 VVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRG 253
V+ + + G++ A +FDEM R + +S+ ++ G EA M + G
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
Query: 254 AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTE 313
+ D T ++ G GS + +L +++ G + + LID K G E
Sbjct: 220 S--DAEPRTFVVMLRASAGL-GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSL 373
A +F + + +M++GY A L M++ G+ + T++ +
Sbjct: 277 DARCVFDGMPEK-----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 374 IYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL 433
I ++ E A + + G +I A A++D K GR+++A + F R
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA----RNVFDRMP 387
Query: 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEK 493
+ + I++ L++ + +A+ +F RM+ G+ P+ + +++A CR + E
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQGW 446
Query: 494 FFQEAITA--GLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNIT---YGAL 548
++++ + P Y MI R+G + A +R AP T + AL
Sbjct: 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR------APFKPTVNMWAAL 500
Query: 549 ISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLDKK 606
++ L+ E + G G P ++ V L Y G A A ++E+L +K
Sbjct: 501 LTACRIHKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 95/449 (21%), Positives = 180/449 (40%), Gaps = 48/449 (10%)
Query: 158 CMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCAR 217
C++ + I L G + + G L +N ++ + + G V A VFD M R
Sbjct: 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251
Query: 218 GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSI 277
D S+ M+ Y G E M + D T+T +I+A G
Sbjct: 252 ----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA---CELLGDE 304
Query: 278 KQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTA 337
+ E+ +V+ G+ +V LI G +A ++F ++ D ++TA
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD-----AVSWTA 359
Query: 338 MISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEG 397
MISGY K ++A M++ + P+ T S++ +G+ + L +L ++G
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 398 CTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQAL 457
+ NA+I+ K + +A E+ F + D I++T +++ +AL
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEV----FHNIPEKDVISWTSIIAGLRLNNRCFEAL 475
Query: 458 GLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-------------- 503
+F R + L P+ ++A R + ++ + G+
Sbjct: 476 -IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534
Query: 504 ------------FPTKE----TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGA 547
F + E ++ ++ GY+ G S AV+ F RM + G PD +T+ +
Sbjct: 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594
Query: 548 LISGLCKQSKLDEACQFYESMIGK-GISP 575
L+ + + + +++ SM K I+P
Sbjct: 595 LLCACSRSGMVTQGLEYFHSMEEKYSITP 623
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 5e-14
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 294 PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK 344
P+V T+ LIDG CKKG E+A +LF ++ + KPNV+TY+ +I G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 4e-13
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCK 308
T LI +C KG +++A +L EM ++G KPNVYT+++LIDGLCK
Sbjct: 5 TYNTLIDGYCKKGK---VEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-12
Identities = 123/570 (21%), Positives = 221/570 (38%), Gaps = 83/570 (14%)
Query: 143 LISNGNFERAHEVMQCMVS--------SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRV 194
L S+G E+A ++++ M ++ + RL E V E G + + L+
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEE----GSRVCSRALSSH 116
Query: 195 VGIACELG------LVEYAE-----EVFDEMCARGVCADASSYKLMVVAYCRMGRVTEAD 243
+ LG V + E VF +M R D S+ ++V Y + G EA
Sbjct: 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEAL 172
Query: 244 RWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLI 303
ML G D T ++ C G + + E+ +VR G++ +V LI
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRT-C--GGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
Query: 304 DGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGL 363
K G A +F ++ R D ++ AMISGY + + L M+E +
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRRD-----CISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 364 LPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYE 423
P+ T TS+I +G+ ++ + K G ++ N++I G EA
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA-- 342
Query: 424 LLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFC 483
+K F R D +++T ++S + K +AL + M + ++PD ++++A
Sbjct: 343 --EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400
Query: 484 RQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI 543
+ K + A GL ++I Y + I A++ F + + D I
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456
Query: 544 TYGALISGLCKQSKLDEACQFYESMIGK----------GISPC--------------EVT 579
++ ++I+GL ++ EA F+ M+ +S C V
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 580 RVTLAYE----------YCKQGDSATAMIILESLDKKL--WIRTVNTLIRKLCSEKRVGM 627
R + ++ Y + G A S +K + W N L+ + + M
Sbjct: 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW----NILLTGYVAHGKGSM 572
Query: 628 AALFFHKLLGKDQNVDRVSLAALKNACYES 657
A F++++ N D V+ +L AC S
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRS 602
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK 554
TY ++I GY + G + A+K F M + G P+ TY LI GLCK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 400 PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLS 445
P++ YN +IDG CKKG+V+EA +L + +R ++ + TY+IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 1e-09
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 397 GCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427
G P++ YN +IDGLC+ GRV EA ELL +
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 75/289 (25%), Positives = 116/289 (40%), Gaps = 18/289 (6%)
Query: 370 YTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGR-VQEAYELLKKA 428
Y L+ + G + DL++ M K G Y+A CKK R V+EA+ K
Sbjct: 377 YNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 429 FQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKM 488
L T+ +L+S + AL + + +AGL D YTTLI+ + K+
Sbjct: 433 RNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 489 KESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGAL 548
+ F E + AG+ T+ ++I G R G ++ A + M PD + + AL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 549 ISGLCKQS-KLDEACQFYESMIG--KGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK 605
IS C QS +D A M I P +T L G A + + + +
Sbjct: 549 ISA-CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 606 KLWIR---TVNTLIRKLCSEK-RVGMAALFFHKLLGKDQNVDRVSLAAL 650
I+ V T+ CS+K A + + K D V +AL
Sbjct: 608 Y-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 540 PDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK 589
PD +TY LI G CK+ K++EA + + M +GI P T L CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 4e-08
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 290 KGWKPNVYTHTVLIDGLCKKGWTEKAFRLF 319
KG KP+V T+ LIDGLC+ G ++A L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 1e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 326 DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMK 359
KP+V TY +I G C+ +++ A LL+ M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 1e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 537 GCAPDNITYGALISGLCKQSKLDEACQFYESM 568
G PD +TY LI GLC+ ++DEA + + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 52/260 (20%), Positives = 113/260 (43%), Gaps = 18/260 (6%)
Query: 333 HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYD---- 388
H + + C ++ +A LLE M+E + + + Y +L ++ ++RA +
Sbjct: 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF----RLCEWKRAVEEGSR 107
Query: 389 LMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHL 448
+ + + NA++ + G + A+ + K +R+L ++ +L+ +
Sbjct: 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYA 163
Query: 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE 508
K +AL L+ RM+ AG+ PD++ + ++ + + + G +
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223
Query: 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM 568
++I Y++ G++ SA F RM + C I++ A+ISG + + E + + +M
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTM 279
Query: 569 IGKGISP--CEVTRVTLAYE 586
+ P +T V A E
Sbjct: 280 RELSVDPDLMTITSVISACE 299
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 5e-07
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 361 QGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLM 393
+GL P+ TY +LI G C+ G + A +L+D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (120), Expect = 7e-07
Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 4/260 (1%)
Query: 243 DRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWK-PNVYTHTV 301
L+ +L+ A L L LL G + +A ELLEE + +
Sbjct: 5 LLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLL 64
Query: 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ 361
L L K G E+A L K + + + K A LLE+
Sbjct: 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124
Query: 362 GLLPNTNTYTSLIYGHCKVGNFERAYDLMD--LMGKEGCTPNIYAYNAIIDGLCKKGRVQ 419
P+ + ++G++E A +L + L A A+ L GR +
Sbjct: 125 DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184
Query: 420 EAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLI 479
EA ELL+KA + D L +LK + ++AL + + ++ + A L
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYNLA 243
Query: 480 AAFCRQKKMKESEKFFQEAI 499
+ +E+ + ++A+
Sbjct: 244 LLLLELGRYEEALEALEKAL 263
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 333 HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNT 367
TY +I G CK ++ A L + MKE+G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 334 TYTAMISGYCKEEKMNRAEMLLERMKEQGL 363
TY ++ISGYCK K+ A L + MKE+G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 369 TYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNI 402
TY +LI G CK G E A +L M + G P++
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISP 575
+TY LI GLCK +++EA + ++ M +GI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 59/276 (21%), Positives = 98/276 (35%), Gaps = 48/276 (17%)
Query: 227 KLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEE 286
+L+ R+GRV EA LS L D A L+LL A+ G ++A E L +
Sbjct: 333 RLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLAL---GDFEKAAEYLAK 388
Query: 287 MVRKGWKP-NVYTHTVLIDGLCK--KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYC 343
P N T L G+ K +G +A + D +I Y
Sbjct: 389 A--TELDPENAAARTQL--GISKLSQGDPSEAIADLETAAQLDPELGRAD--LLLILSYL 442
Query: 344 KEEKMNRA----EMLLERMKEQGLLPNTNTYTSLIYG-------------HCKVGNFERA 386
+ + ++A + L ++ + L N L G + F A
Sbjct: 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
Query: 387 YDLMDLMGKEGCTP---------------NIYAYNAIIDGLCKKGRVQEAYELLKKAFQR 431
+L + +EG N+ A A+ + G +EA L+KA +
Sbjct: 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562
Query: 432 ELQADKITYTILLSEH-LKQAETKQALGLFCRMVKA 466
Q I + L+++ L + + K+AL + A
Sbjct: 563 NPQE--IEPALALAQYYLGKGQLKKALAILNEAADA 596
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 369 TYTSLIYGHCKVGNFERAYDLMDLMGKEGC 398
TY SLI G+CK G E A +L M ++G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 467 GLNPDIHAYTTLIAAFCRQKKMKESEKFFQE 497
GL PD+ Y TLI CR ++ E+ + E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 543 ITYGALISGLCKQSKLDEACQFYESMIGKGI 573
+TY +LISG CK KL+EA + ++ M KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGC 538
TY S+I GY + G + A++ F+ M + G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 5e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 369 TYTSLIYGHCKVGNFERAYDLMDLMGKEGCTP 400
TY +L+ K G+ + A +++ M G P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 403 YAYNAIIDGLCKKGRVQEAYELLKK 427
YN++I G CK G+++EA EL K+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKE 25
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 332 VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP 365
+ TY A++ K + A +LE MK GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 502 GLFPTKETYTSMICGYLRDGNISSAVKYFQRM 533
GL P TY ++I G R G + AV+ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQAD 436
YN +IDGLCK GRV+EA EL K+ +R ++ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541
TY ++I G + G + A++ F+ M + G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 332
T+ LIDGLCK G E+A LF ++ + +P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSD 326
T+ LI G CK G E+A LF ++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 675 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.62 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.23 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.22 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.09 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.07 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.95 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.87 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.63 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.55 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.45 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.11 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.08 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.01 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.98 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.96 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.92 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.91 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.9 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.85 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.78 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.77 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.74 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.71 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.71 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.68 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.66 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.58 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.53 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.5 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.47 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.44 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.43 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.41 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.36 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.35 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.27 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.25 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.23 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.22 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.13 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.12 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.11 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.09 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.0 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.95 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.9 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.85 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.82 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.65 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.57 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.29 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.29 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.22 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.21 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.17 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.17 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.16 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.13 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.05 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.04 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.04 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.95 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.92 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.89 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.84 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.73 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.72 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.66 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.66 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.11 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.11 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.0 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.99 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.94 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.89 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.64 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.64 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.45 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.43 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.37 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.27 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.17 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.15 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.14 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.08 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.91 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.82 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.76 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.75 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.17 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.16 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.02 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.75 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 92.6 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.55 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.09 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.71 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.38 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.32 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.2 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.88 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.65 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.64 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.49 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.75 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.69 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.34 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.33 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.29 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.69 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.57 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.39 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.32 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 88.31 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.3 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.51 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.05 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 86.62 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.13 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.11 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.93 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.87 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.82 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 85.71 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.52 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 85.25 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 85.16 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.76 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.18 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.02 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.63 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.71 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.64 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.56 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.49 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.49 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 82.3 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.45 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.26 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.18 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.11 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-70 Score=618.23 Aligned_cols=552 Identities=19% Similarity=0.239 Sum_probs=477.6
Q ss_pred HHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHH-----------HHHHHHHhcCChHH
Q 044815 103 VVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQ-----------CMVSSFAEIGRLKE 171 (675)
Q Consensus 103 v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~-----------~li~~~~~~g~~~~ 171 (675)
++......+....|.++|..+... ++..+...++.++..+.+.|+++.|.++|+ .+|.+|++.|++++
T Consensus 92 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~ 170 (857)
T PLN03077 92 LFRLCEWKRAVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170 (857)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHH
Confidence 344444445566777777776644 344566677788888888888888887654 56788888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHH-----------------------------------HHHHHHHHhcCChhHHHHHHHHHhh
Q 044815 172 GFSMVIEMTNNGLPLITSTL-----------------------------------NRVVGIACELGLVEYAEEVFDEMCA 216 (675)
Q Consensus 172 A~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~ 216 (675)
|+.+|.+|...|+.||..|| +.++.+|++.|++++|.++|++|.
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~- 249 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP- 249 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-
Confidence 88888888877777765555 666777788899999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCh
Q 044815 217 RGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNV 296 (675)
Q Consensus 217 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (675)
.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++. |+++.|.+++..|.+.|+.||.
T Consensus 250 ---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~---g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 250 ---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL---GDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred ---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCccch
Confidence 4688999999999999999999999999999999999999999999999997 7899999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYG 376 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 376 (675)
.+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 999999999999999999999999884 489999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 377 HCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQA 456 (675)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 456 (675)
|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999885 46777888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------------------CCC
Q 044815 457 LGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL------------------------------FPT 506 (675)
Q Consensus 457 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------------------~~~ 506 (675)
+.+|++|.. ++.||..+|+.++.+|++.|+++.+.+++..+.+.|+ .||
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d 553 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD 553 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 888888875 4677777776666555444444444444444433332 478
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMI-GKGISPCEVTRVTLAY 585 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~ 585 (675)
..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|..++.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999998 6799999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 044815 586 EYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
+|++.|++++|.+++++|..+|+..+|++|+.+|...|+.+.|....+++++..|+ +...|..+.++|...|+|++|.+
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999988889999999999999999999999999999999888 88899999999999999999999
Q ss_pred HHHHHHhc
Q 044815 666 LSQRIAEG 673 (675)
Q Consensus 666 ~~~~~~~~ 673 (675)
+.+.+.++
T Consensus 713 vr~~M~~~ 720 (857)
T PLN03077 713 VRKTMREN 720 (857)
T ss_pred HHHHHHHc
Confidence 99988764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-70 Score=610.74 Aligned_cols=550 Identities=18% Similarity=0.203 Sum_probs=519.4
Q ss_pred HHHHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHH---------------HHHHHHHH
Q 044815 100 AITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVM---------------QCMVSSFA 164 (675)
Q Consensus 100 ~~~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~---------------~~li~~~~ 164 (675)
...++..+...+.+..|+.+|..+... +..++..+|..++..+.+.+.++.+..++ +.++..|+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 344566677778899999999998764 45667778888888888888888877665 46788999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044815 165 EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADR 244 (675)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 244 (675)
+.|+++.|+.+|++|. ++|..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.++++.++++.+.+
T Consensus 133 ~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 9999999999999996 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 245 WLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 245 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
++..|.+.|+.||..+|+.++.+|++. |++++|.++|++|. .||..+||.+|.+|++.|+.++|+++|.+|.+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998 79999999999986 46999999999999999999999999999865
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHH
Q 044815 325 SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYA 404 (675)
Q Consensus 325 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 404 (675)
.|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+
T Consensus 282 -~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 282 -LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred -cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 679999999999999999999999999999999999999999999999999999999999999999997 478999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 405 YNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.++
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 9999999999999865 6889999999999999999999999999986 5899999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH
Q 044815 565 YESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 565 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
+..+.+.|+.+|..+++.|+.+|+++|++++|.++|+.+ .++..+||+++.+|++.|+.++|+++|++|.+.|..||.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999999998 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.||..++.+|.+.|++++|.++++.+.+.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999853
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-68 Score=584.36 Aligned_cols=509 Identities=18% Similarity=0.246 Sum_probs=445.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 044815 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGL-PLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAY 233 (675)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 233 (675)
.+..++..+++.|++++|+++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.+|.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 344566777888999999999999988885 46777788888899999999999999988863 8899999999999
Q ss_pred HHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 044815 234 CRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTE 313 (675)
Q Consensus 234 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 313 (675)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~---G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS---GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKE--QGLLPNTNTYTSLIYGHCKVGNFERAYDLMD 391 (675)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (675)
+|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 525 eAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 525 KAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999988854 67889999999999999999999999999999976 5788999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044815 392 LMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD 471 (675)
Q Consensus 392 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 471 (675)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG 551 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 551 (675)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999988999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcC-------------------CHHHHHHHHHHHhh---
Q 044815 552 LCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYC----KQG-------------------DSATAMIILESLDK--- 605 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~~--- 605 (675)
|++.|++++|.+++++|.+.|+.||..+|+.++..+. +++ ..++|..+|++|..
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999888888775432 222 23678888888877
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 606 KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.|+..+|+.++.++++.+..+.+..+++.+...+..|+..+|+.++.++.+. .++|..+++.+.+.
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 4688889998888888888889988888888888888889999999887432 25799988888763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=580.44 Aligned_cols=478 Identities=18% Similarity=0.265 Sum_probs=450.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 044815 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR 238 (675)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 238 (675)
++..|.+.|..++|+.+|..|.. |+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~ 487 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC
Confidence 45567888999999999988864 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 044815 239 VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRL 318 (675)
Q Consensus 239 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 318 (675)
+++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~---G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARA---GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 044815 319 FLKLVRS-DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEG 397 (675)
Q Consensus 319 ~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (675)
|++|... .++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9999753 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 398 CTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTT 477 (675)
Q Consensus 398 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 477 (675)
+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~ 724 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK--- 554 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 554 (675)
||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ 804 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred -c-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CChhh
Q 044815 555 -Q-------------------SKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK---LWIRT 611 (675)
Q Consensus 555 -~-------------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 611 (675)
. +..++|..+|++|.+.|+.||..||..++.++++.+..+.+..+++.+... ++..+
T Consensus 805 ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~ 884 (1060)
T PLN03218 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884 (1060)
T ss_pred HHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhh
Confidence 1 124679999999999999999999999998899999999999999988654 46789
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
|+++++++.+. .++|..++++|.+.|+.|+..
T Consensus 885 y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 885 LSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999998442 468999999999999998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-63 Score=541.22 Aligned_cols=469 Identities=20% Similarity=0.250 Sum_probs=296.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARG-VCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
+...|+.++..+.+.|++++|.++|+.|...+ +.||..+|+.++.++++.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34455556666666666666666666665432 45566666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 266 TAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKE 345 (675)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 345 (675)
..|++. |++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+ .|..||..+|+.++.++++.
T Consensus 166 ~~y~k~---g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 166 LMHVKC---GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHhcC---CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcC
Confidence 666655 45666666666653 24666666666666666666666666666643 34566666666666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 346 EKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELL 425 (675)
Q Consensus 346 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 425 (675)
|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.+ +|..+||.++.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666642 45666666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044815 426 KKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP 505 (675)
Q Consensus 426 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (675)
++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ |
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666643 5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIG-KGISPCEVTRVTLA 584 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~ 584 (675)
|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|..++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 66666666666666666666666666666666666666666666666666666666666666654 46666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 044815 585 YEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
.+|++.|++++|.++++++...|+..+|++++.+|+..|+++.|..+++++++.+|. +..+|..++++|.+.|+|++|.
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHH
Confidence 666666666666666666655566666666666666666666666666666665554 4556666666666666666666
Q ss_pred HHHHHHHh
Q 044815 665 DLSQRIAE 672 (675)
Q Consensus 665 ~~~~~~~~ 672 (675)
++++++.+
T Consensus 549 ~v~~~m~~ 556 (697)
T PLN03081 549 KVVETLKR 556 (697)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=537.94 Aligned_cols=505 Identities=18% Similarity=0.219 Sum_probs=453.9
Q ss_pred HHHHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 100 AITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEM 179 (675)
Q Consensus 100 ~~~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~ 179 (675)
...++..+...+.+..|+++|.|+....++.++..+| ..++.++.+.++++.|.+++..|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~--------------------~~ll~a~~~~~~~~~a~~l~~~m 149 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTY--------------------DALVEACIALKSIRCVKAVYWHV 149 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHH--------------------HHHHHHHHhCCCHHHHHHHHHHH
Confidence 3355666777888999999999998776666655555 45666677788888888899999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHH
Q 044815 180 TNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNA 259 (675)
Q Consensus 180 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 259 (675)
.+.|+.||..+|+.++..|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+.|..|+..
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 999999999999999999999999999999999996 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMI 339 (675)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 339 (675)
+|..++.++++. |..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|. .+|..+||.+|
T Consensus 226 t~~~ll~a~~~~---~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li 297 (697)
T PLN03081 226 TFVVMLRASAGL---GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSML 297 (697)
T ss_pred hHHHHHHHHhcC---CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHH
Confidence 999999999997 7899999999999999999999999999999999999999999999884 47999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQ 419 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 419 (675)
.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 420 EAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 420 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 499 (675)
+|.++|++|. .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.
T Consensus 378 ~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999985 579999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H-CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H
Q 044815 500 T-AGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-E 577 (675)
Q Consensus 500 ~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~ 577 (675)
+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|+..|+++.|..+++++.+ +.|+ .
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~ 528 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL 528 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC
Confidence 6 589999999999999999999999999999876 4789999999999999999999999999999976 5564 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCC----ChhhHHHH-------HHHHHc----cCCHHHHHHHHHHHhcCCCCC
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDKKL----WIRTVNTL-------IRKLCS----EKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l-------~~~~~~----~g~~~~A~~~~~~~~~~~~~p 642 (675)
.+|..++..|++.|++++|.++++.|.++. ...+|..+ +.+-.. ..-++...++..+|.+.|..|
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 688999999999999999999999998742 11122111 000000 111345567788888999888
Q ss_pred CHH
Q 044815 643 DRV 645 (675)
Q Consensus 643 ~~~ 645 (675)
|..
T Consensus 609 ~~~ 611 (697)
T PLN03081 609 EEN 611 (697)
T ss_pred Ccc
Confidence 743
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=329.62 Aligned_cols=541 Identities=16% Similarity=0.108 Sum_probs=419.3
Q ss_pred cChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHH--------------HHHHhcCChHHHHHHH
Q 044815 111 AGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMV--------------SSFAEIGRLKEGFSMV 176 (675)
Q Consensus 111 ~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li--------------~~~~~~g~~~~A~~~~ 176 (675)
+.+..|+..+..+.... +.....+..++..+...|++++|.+.|+.++ ..+...|++++|...+
T Consensus 343 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 44445555554443322 2233445555666666666666666555432 2455566666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCC
Q 044815 177 IEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAIL 256 (675)
Q Consensus 177 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 256 (675)
..+.+.+ +........++..+.+.|++++|.++++.+... .+.+..+|..+...+...|++++|...|+++.+... .
T Consensus 421 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 497 (899)
T TIGR02917 421 ETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-D 497 (899)
T ss_pred HHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C
Confidence 6666544 223344455566667777777777777777654 345677788888888888888888888888876532 2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 044815 257 DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYT 336 (675)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (675)
+...+..+...+... |++++|.+.++++...+. .+..++..+...+.+.|+.++|...+.++.+.. +.+...+.
T Consensus 498 ~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 571 (899)
T TIGR02917 498 FFPAAANLARIDIQE---GNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPAL 571 (899)
T ss_pred cHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHH
Confidence 445556666666665 788888888888877643 367778888888888888888888888886643 45566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044815 337 AMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416 (675)
Q Consensus 337 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 416 (675)
.++..+.+.|++++|..+++++.+. .+.+..+|..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 8888888899999999999888764 34467888889999999999999999999888764 456777888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 417 RVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQ 496 (675)
Q Consensus 417 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 496 (675)
++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988753 4567788889999999999999999999988875 5577788888899999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 497 EAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
++...+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++++... ++
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~ 803 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DN 803 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CC
Confidence 998865 555778888999999999999999999988753 44677888889999999999999999999998542 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC 654 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 654 (675)
...+..++..+.+.|+ .+|+.+++++.. +.+...+..++..+...|++++|.++++++++.+|. +..++..++.++
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 881 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALAL 881 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Confidence 5677889999999999 889999998765 346677888999999999999999999999999998 999999999999
Q ss_pred HhcCchhHHHHHHHHHHh
Q 044815 655 YESNKYALFSDLSQRIAE 672 (675)
Q Consensus 655 ~~~g~~~~A~~~~~~~~~ 672 (675)
.+.|++++|.++++++++
T Consensus 882 ~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 882 LATGRKAEARKELDKLLN 899 (899)
T ss_pred HHcCCHHHHHHHHHHHhC
Confidence 999999999999999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=319.97 Aligned_cols=493 Identities=15% Similarity=0.100 Sum_probs=317.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTE 241 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (675)
.+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+......++..+.+.|++++
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHH
Confidence 3344444444444444444332 2233334444444444444444444444444332 1122233334444555555555
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 242 ADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLK 321 (675)
Q Consensus 242 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 321 (675)
|..+++++.... ..+..++..+...+... |++++|.+.|+++.+... .+...+..++..+...|++++|.+.|++
T Consensus 450 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 450 ALAAAKKLEKKQ-PDNASLHNLLGAIYLGK---GDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555554431 22444555555555554 566666666666655432 2344555566666666666666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 044815 322 LVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN 401 (675)
Q Consensus 322 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 401 (675)
+++.. +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+
T Consensus 525 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 600 (899)
T TIGR02917 525 VLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDS 600 (899)
T ss_pred HHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence 65432 3455566666666666677777777776666543 2345556666677777777777777777766543 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 6677777777777777777777777776643 3455566677777777777777777777776653 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+...|++++|.++++.+.+... .+...+..+...+...|++++|...++++... .|+..++..++.++.+.|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 7777777777777777776643 45666777777777888888888888887764 35556666777778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCC
Q 044815 562 CQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (675)
.+.++++++.. +.+...+..++..|.+.|++++|...|+++.+ +++...++.++..+.+.|+ ++|+.+++++++..
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 88888877743 22455667778888888888888888888755 3456677888888888888 77888888888887
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 640 QNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 640 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
|. +..++..++.++...|++++|.++++++++.
T Consensus 834 ~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 834 PN-IPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77 7778888888888888888888888888763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-25 Score=257.68 Aligned_cols=560 Identities=14% Similarity=0.064 Sum_probs=343.5
Q ss_pred hHHHHHHHHHHhhhcChhHHHHHHHHhhhC-CCCcchhh-------------hHHHHHHHHHhCCChhHHHHHHHHHHH-
Q 044815 97 HEQAITVVASLANEAGSMVALSFFYWAIGF-AKFRHFMR-------------LYIVCATSLISNGNFERAHEVMQCMVS- 161 (675)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~al~~f~~~~~~-~~~~~~~~-------------~y~~~~~~l~~~~~~~~a~~~~~~li~- 161 (675)
++............++.+.|.+.++.+... |+...... .....+..+...|++++|...|+.++.
T Consensus 62 p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 62 PDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC
Confidence 444444444445667888999988766544 43322111 123445577788999999888886543
Q ss_pred ---------HHH-----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HHH
Q 044815 162 ---------SFA-----EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD--ASS 225 (675)
Q Consensus 162 ---------~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 225 (675)
.|. ..|+.++|+..++++.+.. |.+...+..+...+...|+.++|++.++++.+...... ...
T Consensus 142 ~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~ 220 (1157)
T PRK11447 142 APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQL 220 (1157)
T ss_pred CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHH
Confidence 122 2488889999999988875 56777888888888889999999999988865321000 000
Q ss_pred H-----------------HHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044815 226 Y-----------------KLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMV 288 (675)
Q Consensus 226 ~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 288 (675)
| ...+..+-.....+.|...+.++......|+.... ..-..+... |++++|+..|++..
T Consensus 221 ~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~-~~G~~~~~~---g~~~~A~~~l~~aL 296 (1157)
T PRK11447 221 WYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR-AQGLAAVDS---GQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH-HHHHHHHHC---CCHHHHHHHHHHHH
Confidence 1 00011111111123344444443332222221111 111222332 67777777777777
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHH
Q 044815 289 RKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYT------------AMISGYCKEEKMNRAEMLLE 356 (675)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~A~~~~~ 356 (675)
+... .+..++..+...+.+.|++++|+..|++.++...-.++...|. .....+.+.|++++|+..|+
T Consensus 297 ~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 297 RANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6532 2566777777777777777777777777765432222211111 12334566777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-------------------------
Q 044815 357 RMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDG------------------------- 411 (675)
Q Consensus 357 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~------------------------- 411 (675)
++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 376 ~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 376 QARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 777652 2245566667777777777777777777777653 2334444444433
Q ss_pred -----------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044815 412 -----------------LCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHA 474 (675)
Q Consensus 412 -----------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 474 (675)
+...|++++|.+.|++.++.. +.+...+..+...+.+.|++++|...++++.+.. +.+...
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 334455555555555555432 1233444445555555555555555555555432 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK---------ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITY 545 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 545 (675)
+..+...+...++.++|...++.+......++. ..+..+...+...|+.++|..+++. .+++...+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~ 606 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRID 606 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHH
Confidence 333333344455555555555443321111111 1122334556667777777777662 23445567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHcc
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSE 622 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~ 622 (675)
..+...+.+.|++++|+..|+++++. .|+ ......++..|...|++++|++.++.+.+. .+...+..++.++.+.
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 77888899999999999999999984 454 567788999999999999999999987753 4566678888899999
Q ss_pred CCHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 623 KRVGMAALFFHKLLGKDQNV-----DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
|++++|.+++++++...+.. +...+..++.++...|++++|.+.+++++..
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999998876542 2356777899999999999999999999753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-24 Score=250.91 Aligned_cols=548 Identities=14% Similarity=0.035 Sum_probs=362.7
Q ss_pred hhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH---------------------------
Q 044815 109 NEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS--------------------------- 161 (675)
Q Consensus 109 ~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~--------------------------- 161 (675)
..++++.|.+.+..+.... +.+...+..++..+...|+.++|...++.++.
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 3456677777777665432 22466677888888999999999887775422
Q ss_pred ---HHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044815 162 ---SFAEIGRLKEGFSMVIEMTNNGLPLITS-TLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMG 237 (675)
Q Consensus 162 ---~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 237 (675)
.+...|++++|++.|+.+.+.+ +++.. ............|+.++|++.++++.+.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 4678899999999999998765 44432 22222222334699999999999999874 446778888889999999
Q ss_pred CHHHHHHHHHHHhHCCCCC----------------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 044815 238 RVTEADRWLSAMLDRGAIL----------------DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTV 301 (675)
Q Consensus 238 ~~~~A~~~~~~m~~~g~~~----------------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (675)
+.++|+..++++....... +......+............++.|...+..+......|+.. ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHH
Confidence 9999999999987642110 00000011111111111123455666666554433233322 224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH----------
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP-NTNTY---------- 370 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~---------- 370 (675)
....+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+..... +...+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 4677888999999999999998754 3477889999999999999999999999998753321 11112
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 044815 371 --TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH- 447 (675)
Q Consensus 371 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~- 447 (675)
......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++++..+ .+...+..+...+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 122456778999999999999999874 45677888899999999999999999999987642 3344444444443
Q ss_pred -----------------------------------------HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 448 -----------------------------------------LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK 486 (675)
Q Consensus 448 -----------------------------------------~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 486 (675)
...|++++|+..+++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 23444444444444444432 123334444444444555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 044815 487 KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI---------TYGALISGLCKQSK 557 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~g~ 557 (675)
++++|...++++.+... .+...+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 55555555554444321 122222223333344444555554444432211111110 11223445566677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 558 LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
+++|..+++. ...+...+..++..|.+.|++++|+..|+++.. +.+...+..++..|...|++++|++.++++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777766651 223445667788999999999999999999765 446778899999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 636 LGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 636 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
++..|. +..++..++.++...|++++|.++++++++.
T Consensus 664 l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 664 PATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 888877 7788888999999999999999999998763
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-21 Score=213.99 Aligned_cols=538 Identities=12% Similarity=0.059 Sum_probs=383.4
Q ss_pred hhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH----------HHHhcCChHHHHHHHH
Q 044815 108 ANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS----------SFAEIGRLKEGFSMVI 177 (675)
Q Consensus 108 ~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~----------~~~~~g~~~~A~~~~~ 177 (675)
...+++..|+..|+.+....+ .+..++..++..+...|++++|....+..+. .+...+++++|..+++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye 132 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVE 132 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHH
Confidence 334778899999999876543 2377788999999999999999988876443 2355599999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHH
Q 044815 178 EMTNNGLPLITSTLNRVVGI--------ACELGLVEYAEEVFDEMCARGVCADASSYKLM-VVAYCRMGRVTEADRWLSA 248 (675)
Q Consensus 178 ~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 248 (675)
++.... |-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+.++.+
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999986 5566777666665 5555 55555555 3333334456655555 8899999999999999999
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044815 249 MLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNY 328 (675)
Q Consensus 249 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 328 (675)
+.+.+.. +..-...+-..|... .++ +++..+++. .++-+......+...|.+.|+.++|.+++.++.....-
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~--l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAG--QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHh--hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9998644 444455555666662 134 777777553 23357888899999999999999999998776332211
Q ss_pred CCCHHHHHH------------------------------HHHHHHhcCChHHHHHHH-----------------------
Q 044815 329 KPNVHTYTA------------------------------MISGYCKEEKMNRAEMLL----------------------- 355 (675)
Q Consensus 329 ~~~~~~~~~------------------------------li~~~~~~~~~~~A~~~~----------------------- 355 (675)
.|+..+|-- ++..+.+.++++.++++.
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 222222211 133444555555444332
Q ss_pred ------HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 044815 356 ------ERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE-G-CTPNIYAYNAIIDGLCKKGR---VQEAYEL 424 (675)
Q Consensus 356 ------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~ 424 (675)
..|.+. .+-+.....-+.-...+.|+.++|..+++..... + -.++.....-++..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 111111 0002222222222345678888999988887662 1 12344555577777777665 3333222
Q ss_pred -------------------------HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 425 -------------------------LKKAFQRELQA--DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTT 477 (675)
Q Consensus 425 -------------------------~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 477 (675)
+...... .++ +...|..+..++.. ++.++|+..+.+.... .|+......
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 1122211 123 56778888877776 8888999988887765 466554445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQS 556 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 556 (675)
+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. |+ ...+..+...+...|
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 555667899999999999998664 3455566777888899999999999999998753 44 333444444555679
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 557 KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 557 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
++++|...+++.++ +.|+...+..++.++.+.|+.++|+..+++... +.+...++.++.++.+.|++++|+.+|++
T Consensus 591 r~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 591 QPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999998 567777888899999999999999999999766 44677889999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 635 LLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 635 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+++..|. +...+..++.++...|++++|+..++++++
T Consensus 669 AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 669 AHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998 899999999999999999999999999876
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-24 Score=206.38 Aligned_cols=394 Identities=15% Similarity=0.142 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH-
Q 044815 258 NATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYT- 336 (675)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 336 (675)
..+|..+...+-.. |++++|+.+++.+++...+ .+..|..+..++...|+.+.|.+.|.+.++- .|+.....
T Consensus 116 ae~ysn~aN~~ker---g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s 188 (966)
T KOG4626|consen 116 AEAYSNLANILKER---GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHh---chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---Ccchhhhhc
Confidence 34555555555443 5566666666666654322 4556666777777777777777777666552 35544333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh
Q 044815 337 AMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN-IYAYNAIIDGLCK 414 (675)
Q Consensus 337 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 414 (675)
.+...+...|++++|...|.+.++. .|. ...|+.|...+-..|+...|+.-|++..+. .|+ ...|-.|...|..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE 264 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH
Confidence 2333344467777777777666653 233 345666666666777777777777777665 333 5566777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 415 KGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKF 494 (675)
Q Consensus 415 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (675)
.+.+++|...+.+..... +...+.+..+...|..+|..+.|+..+++.++.. +--...|+.|..++-..|++.+|.+.
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 777777777777766532 2334456666666777777777777777777753 22467788888888888888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044815 495 FQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGI 573 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 573 (675)
+.+.+.... -.....+.|...|...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|+..|++.++ +
T Consensus 343 YnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 343 YNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 888887532 2456778888888888888888888888877 4565 45788888888888999999998888888 7
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 574 SPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KL-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 574 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
.|+. ..+..++..|-..|+.+.|++.+.+... .| .....+.|+..|...|+..+|+.-|+.+++..|+ -+..+..+
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNl 496 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNL 496 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHH
Confidence 7764 5667788888888888888888888655 33 4567788999999999999999999999999987 56677777
Q ss_pred HHHHHhcCchhHHHHHHHHH
Q 044815 651 KNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 651 ~~~~~~~g~~~~A~~~~~~~ 670 (675)
+.++--..+|.+-.+.++|+
T Consensus 497 lh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 497 LHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHHHHhcccchHHHHHHH
Confidence 77766666666544444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-20 Score=193.34 Aligned_cols=546 Identities=13% Similarity=0.087 Sum_probs=409.2
Q ss_pred hhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH---------------HHHhcCChHHHHHHHH
Q 044815 113 SMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS---------------SFAEIGRLKEGFSMVI 177 (675)
Q Consensus 113 ~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~---------------~~~~~g~~~~A~~~~~ 177 (675)
.+.|.+-|+++.++.+- +.....--+.+....++|..|..+|..++. ++.+.|+.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~--Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD--NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCc--chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 46899999999877532 333333345666778999999999997544 6779999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCC
Q 044815 178 EMTNNGLPLITSTLNRVVGIACEL---GLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGA 254 (675)
Q Consensus 178 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 254 (675)
..++.+ |.++.++..|.-.-... ..+..+...+...-..+ .-|+...+.|...|.-.|++..++.+..-+.....
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 999976 34444444443332222 34666777777766543 45888999999999999999999999999887542
Q ss_pred CC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH
Q 044815 255 IL--DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 332 (675)
Q Consensus 255 ~~--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 332 (675)
.- -...|--+-+++-.. |++++|...|.+..+....--+..+..|..+|.+.|+++.+...|+++.+.. +-+.
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~---Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQ---GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchH
Confidence 11 123355566666665 8999999999988876433224456678899999999999999999998754 4455
Q ss_pred HHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----hhcCCCCCHHH
Q 044815 333 HTYTAMISGYCKEE----KMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLM----GKEGCTPNIYA 404 (675)
Q Consensus 333 ~~~~~li~~~~~~~----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~ 404 (675)
.+...+...|...+ ..+.|..++.+..+.- +.|...|..+...+....- ..++..|..+ ...+-.+.+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 67777777776654 5677888888877753 4478888888877765444 3336666543 44565688899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044815 405 YNAIIDGLCKKGRVQEAYELLKKAFQR---ELQADK------ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAY 475 (675)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 475 (675)
.|.+...+...|++++|...|.+.... ...+|. .+-..+...+...++.+.|.+.|..+.+.. +.-+..|
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~y 533 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAY 533 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHH
Confidence 999999999999999999999998765 122333 233345667777889999999999999862 3345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH-
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG-CAPDNITYGALISGLC- 553 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~- 553 (675)
..++.+....+...+|...+.+....+ ..++..++.+...+.+...+..|.+-|+...+.- ..+|..+...|.+.|.
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 666655555688999999999998764 3567778888889999989999988777665532 2367777667777553
Q ss_pred -----------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHH
Q 044815 554 -----------KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLC 620 (675)
Q Consensus 554 -----------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~ 620 (675)
..+..++|+++|.+.++.... |...-+.++-.++..|++++|..+|.++... ....+|-.++.+|.
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 234577899999999884321 3455577889999999999999999998773 36778999999999
Q ss_pred ccCCHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 621 SEKRVGMAALFFHKLLGKD-QNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..|++..|+++|+.+++.- +.-+...+..|+.++++.|++.+|.+.+.+++.
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999988764 455788999999999999999999999988865
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-22 Score=197.36 Aligned_cols=434 Identities=16% Similarity=0.166 Sum_probs=256.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044815 163 FAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEA 242 (675)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 242 (675)
..+.|++++|.+.-..+-..+ +.+......+-..+.+..+++....--....+. .+.-..+|..+...+-..|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHH
Confidence 344555555555444443332 333344444444455555555443333222222 133455666666666666666666
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 243 DRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVY-THTVLIDGLCKKGWTEKAFRLFLK 321 (675)
Q Consensus 243 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 321 (675)
+.+|+.+++.... ....|..+..++... |+.+.|.+.|.+..+. .|+.. ..+.+...+-..|++++|...+.+
T Consensus 136 l~~y~~aiel~p~-fida~inla~al~~~---~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 136 LALYRAAIELKPK-FIDAYINLAAALVTQ---GDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHhcCch-hhHHHhhHHHHHHhc---CCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 6666666664321 344555555555554 5666666666666554 23322 233344444556677777666666
Q ss_pred HHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 044815 322 LVRSDNYKPN-VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCT 399 (675)
Q Consensus 322 ~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (675)
.++.. |. ...|+.|...+...|+...|+..|++.+. +.|+ ...|..|...|...+.+++|...|.+..... +
T Consensus 210 Ai~~q---p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 210 AIETQ---PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHhhC---CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 65532 32 34566666666667777777777776665 3444 4566666666766777777777666665542 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 400 PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLI 479 (675)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 479 (675)
...++|..+.-.|...|.+|.|+..+++.++.. +.-...|+.|..++-..|++.+|...+.+..... +......+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 345566666666667777777777777766642 2234566777777777777777777777666652 33455666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 044815 480 AAFCRQKKMKESEKFFQEAITAGLFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSK 557 (675)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 557 (675)
..+...|.+++|..+|....+- .|. ....+.|...|-.+|++++|+..|++.+. +.|+ ...|+.+...|-..|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 7777777777777777766663 233 34566667777777777777777777665 5565 4467777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CC-ChhhHHHHHHH
Q 044815 558 LDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KL-WIRTVNTLIRK 618 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 618 (675)
.+.|.+.+.+++. +.|.- ..+..|+..|-..|++.+|++-++...+ +| .+..|..++.+
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 7777777777766 44543 4556677777777777777777776554 22 34445444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-19 Score=199.53 Aligned_cols=546 Identities=12% Similarity=0.021 Sum_probs=384.8
Q ss_pred hHHHHHHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH------------HHH
Q 044815 97 HEQAITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS------------SFA 164 (675)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~------------~~~ 164 (675)
+.....+...+...+.+..|+..+..+....+ .+...+..++. -+++++|..+|+.++. +..
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La~----i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~ 151 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSLAA----IPVEVKSVTTVEELLAQQKACDAVPTLRCRS 151 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHHHH----hccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 33334444445666788899999988876543 33333333322 2888999999887654 111
Q ss_pred -------hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-
Q 044815 165 -------EIGRLKEGFSMVIEMTNNGLPLITSTLNRV-VGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCR- 235 (675)
Q Consensus 165 -------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 235 (675)
.-.++++|.+.++ .......|+..+.... .+.|.+.|++++|++++.++.+.+ +.+......|..+|..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAG 229 (987)
T ss_pred hhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 1344566666666 4333333445545544 889999999999999999999875 3455656777778887
Q ss_pred cCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC-CChhh----------------
Q 044815 236 MGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWK-PNVYT---------------- 298 (675)
Q Consensus 236 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~---------------- 298 (675)
.++ +++..+++.. ..-+......+...+.+. |+.++|.++++++...-.. |...+
T Consensus 230 l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~---G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 230 QLD-DRLLALQSQG----IFTDPQSRITYATALAYR---GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred hCH-HHHHHHhchh----cccCHHHHHHHHHHHHHC---CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 466 7777775532 224777888888888887 7888888888876543111 11111
Q ss_pred --------------HHHHHHHHHhcCCHHHHHHHH-----------------------------HHHHhcCCCCCCHHHH
Q 044815 299 --------------HTVLIDGLCKKGWTEKAFRLF-----------------------------LKLVRSDNYKPNVHTY 335 (675)
Q Consensus 299 --------------~~~l~~~~~~~g~~~~A~~~~-----------------------------~~~~~~~~~~~~~~~~ 335 (675)
...++..+.+.++++-+.++. ..+.+.. +-+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l 379 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRL 379 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHH
Confidence 112244555566665554442 1111110 1233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH---------------------
Q 044815 336 TAMISGYCKEEKMNRAEMLLERMKEQ-G-LLPNTNTYTSLIYGHCKVGN---FERAYDL--------------------- 389 (675)
Q Consensus 336 ~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~---~~~A~~~--------------------- 389 (675)
..+.-...+.|+.++|.++|+..... + ..++.....-++..|.+.+. ..++..+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 44444556789999999999998762 1 22344555577777777665 3333222
Q ss_pred -HHHHhh-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 390 -MDLMGK-EGC-TP--NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 390 -~~~m~~-~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
++.... .+. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 111111 111 34 67788888888887 89999999888887753 555554455666678999999999999986
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNIT 544 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 544 (675)
.. +|+...+..+...+.+.|+.++|...+++..+... .+...+..+.....+.|++++|...+++..+ ..|+...
T Consensus 537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a 611 (987)
T PRK09782 537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANA 611 (987)
T ss_pred cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHH
Confidence 64 45555667778889999999999999999998652 2333344444455566999999999999998 4578889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHc
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCS 621 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 621 (675)
|..+..++.+.|++++|+..+++.++ ..|+. ..+..++..+...|+.++|+..+++..+ +.+...+..++.++..
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999 55654 5667889999999999999999999765 4577889999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.|++++|+..|+++++..|+ +..+....++...+..+++.|.+.+++..
T Consensus 690 lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998 77888889999999999999988877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-19 Score=197.04 Aligned_cols=396 Identities=13% Similarity=0.021 Sum_probs=296.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMI 339 (675)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 339 (675)
.+...-..+.+. |++++|+..|++.++. .|+...|..+..+|.+.|++++|++.+.+.++.. +.+...|..+.
T Consensus 129 ~~k~~G~~~~~~---~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a 201 (615)
T TIGR00990 129 KLKEKGNKAYRN---KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 444555666665 8999999999998875 5678889999999999999999999999998754 34677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH----------------
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIY---------------- 403 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---------------- 403 (675)
.+|...|++++|+..|......+-..+.. ...++..+........+...++.-... .|...
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEN--LPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHccCCcchh
Confidence 99999999999999988776543222222 222222221111112222222110000 00000
Q ss_pred --------------HHHHHHHH---HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 404 --------------AYNAIIDG---LCKKGRVQEAYELLKKAFQRE--LQADKITYTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 404 --------------~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
.+..+... ....+++++|.+.|++.++.+ .+.....|..+...+...|++++|+..+++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00001100 012468999999999998764 23345678888889999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NI 543 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 543 (675)
+.. +.....|..+...+...|++++|...|+++++... .+...|..+...+...|++++|+..|++..+. .|+ ..
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~ 434 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIF 434 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHH
Confidence 863 33467888999999999999999999999988753 45788999999999999999999999999885 454 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC-hhh-------HH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK-LW-IRT-------VN 613 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~-------~~ 613 (675)
.+..+..++.+.|++++|+..|++.++ ..|+ ...+..++..|...|++++|++.|++.... +. ... ++
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 788888899999999999999999988 3454 567788999999999999999999996652 21 111 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..+..+...|++++|..+++++++.+|. +...+..++.++.+.|++++|.++++++++
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222334479999999999999999987 778899999999999999999999999875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-18 Score=180.11 Aligned_cols=530 Identities=14% Similarity=0.091 Sum_probs=396.5
Q ss_pred hhcChhHHHHHHHHh-hhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH-----------------HHHhcCChH
Q 044815 109 NEAGSMVALSFFYWA-IGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS-----------------SFAEIGRLK 170 (675)
Q Consensus 109 ~~~~~~~al~~f~~~-~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~-----------------~~~~~g~~~ 170 (675)
+.+++..|+.+|..+ +.+|.+..++++ .++..+.+.++.+.|...|...++ .+-....+.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 346778899999886 445556555543 567788888998888877775432 122334456
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 171 EGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVC--ADASSYKLMVVAYCRMGRVTEADRWLSA 248 (675)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 248 (675)
.++.++...-..+ +-++.+.+.|.+.|.-.|++..++.+.+.+...... .-..+|..+.++|...|++++|..+|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 6777777766654 578889999999999999999999999998875311 1245688899999999999999999998
Q ss_pred HhHCCCCCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHH
Q 044815 249 MLDRGAILDN--ATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKG----WTEKAFRLFLKL 322 (675)
Q Consensus 249 m~~~g~~~~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 322 (675)
..+.. ++. ..+--+...+.+. |+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.
T Consensus 333 s~k~~--~d~~~l~~~GlgQm~i~~---~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 333 SLKAD--NDNFVLPLVGLGQMYIKR---GDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHccC--CCCccccccchhHHHHHh---chHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 87653 444 3334455666665 89999999999998863 336677777888887775 567888888877
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--
Q 044815 323 VRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERM----KEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE-- 396 (675)
Q Consensus 323 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 396 (675)
.+.. +.|...|-.+...+-... ...++..|... ...+-.+.+...|.+...+...|++++|...|+.....
T Consensus 407 ~~~~--~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 407 LEQT--PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred Hhcc--cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 6643 567778887777766544 44446666554 34566678889999999999999999999999987654
Q ss_pred -CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044815 397 -GCT------PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI-TYTILLSEHLKQAETKQALGLFCRMVKAGL 468 (675)
Q Consensus 397 -g~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 468 (675)
-.. +++.+-..+...+-..++++.|.+.|..+++. .|.-+ .|-.++......+...+|...++.....+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 112 23334445777777888999999999999886 34433 33334433344578889999999888764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHH------------cCCHHHHHHHHHHHHH
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAG-LFPTKETYTSMICGYLR------------DGNISSAVKYFQRMNQ 535 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~ 535 (675)
..++..+..+...+.+...+..|.+-|..+.+.- ..+|..+.-+|.+.|.+ .+..++|+++|.+..+
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 5567777878888999999999999887776542 23566777777776653 2457889999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CChhh
Q 044815 536 IGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK----LWIRT 611 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 611 (675)
.. +-|...-|.+.-.++..|++.+|..+|.+..+.... +..++..++.+|..+|++..|+++|+...++ .+..+
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 53 335667777888899999999999999999986541 3357888999999999999999999997653 46778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
...|++++.+.|++.+|.+.+..++...|. |......++.+..+
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHHHHHHH
Confidence 899999999999999999999999999998 66665555555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-18 Score=186.87 Aligned_cols=360 Identities=12% Similarity=-0.007 Sum_probs=172.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 044815 156 MQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCR 235 (675)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 235 (675)
+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566788888888888888888775 3677778888888888888888888888888763 3456778888888888
Q ss_pred cCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 044815 236 MGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKA 315 (675)
Q Consensus 236 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 315 (675)
.|++++|...|......+.. +......++..... ..+........+.. +++...+..+.. |....+.+.+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~-------~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK-------KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH-------HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcc
Confidence 88888888877766544221 11111112111111 11222222222221 112222222222 2211111111
Q ss_pred HHHHHHHHhcCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 316 FRLFLKLVRSDNYKPNV-HTYTAMISG---YCKEEKMNRAEMLLERMKEQG-LLP-NTNTYTSLIYGHCKVGNFERAYDL 389 (675)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~ 389 (675)
..-+....+ ..++. ..+..+... ....+++++|...|++..+.+ ..| +...+..+...+...|++++|...
T Consensus 277 ~~~~~~~~~---~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 277 PAGLEDSNE---LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred hhhhhcccc---cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111111110 01110 001111100 011244555555555555432 112 223344444444555555555555
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044815 390 MDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLN 469 (675)
Q Consensus 390 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 469 (675)
+++..+.. +.+...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|+..|++.++.. +
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 55554432 1223344444555555555555555555544432 2233444444444444555555555554444432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
.+...+..+...+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|+..|++..+
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 233344444444444444444444444444332 12233444444444444444444444444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-20 Score=190.95 Aligned_cols=296 Identities=15% Similarity=0.128 Sum_probs=162.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHH
Q 044815 344 KEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN---IYAYNAIIDGLCKKGRVQE 420 (675)
Q Consensus 344 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~ 420 (675)
..|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ...+..++..|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34444444444444444311 1233444444444444455555444444443321111 1234444555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 421 AYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD----IHAYTTLIAAFCRQKKMKESEKFFQ 496 (675)
Q Consensus 421 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 496 (675)
|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554431 23344455555555555555555555555554332211 1123445556666677777777777
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 497 EAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
++.+... .+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+. .|+
T Consensus 205 ~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 281 (389)
T PRK11788 205 KALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPG 281 (389)
T ss_pred HHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 6665432 2345566666777777777777777777765321111345666677777777777777777777663 455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHc---cCCHHHHHHHHHHHhcCCCCCCH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCS---EKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
...+..++..+.+.|++++|..+++++.+ .|+...++.++..++. .|+.++|+..++++++.++.|++
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 55556667777777777777777766444 3565666666665553 45777788777777765544443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-20 Score=188.17 Aligned_cols=296 Identities=15% Similarity=0.168 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKP--NVHTYTAMISGYCKEEKMNRAE 352 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~ 352 (675)
|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.++......+ ....+..++..|.+.|++++|.
T Consensus 49 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred CChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 566666666666665532 2444566666666666666666666666554221111 1234555666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 353 MLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN----IYAYNAIIDGLCKKGRVQEAYELLKKA 428 (675)
Q Consensus 353 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 428 (675)
.+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++
T Consensus 128 ~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 666666553 223455566666666666666666666666655432211 112344555556666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044815 429 FQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE 508 (675)
Q Consensus 429 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 508 (675)
.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++++.+.. |+..
T Consensus 207 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~ 283 (389)
T PRK11788 207 LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGAD 283 (389)
T ss_pred HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCch
Confidence 5542 223445555556666666666666666666554222123445555666666666666666666655542 4444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK---QSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
.+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|+++++.|++
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4455566666666666666666665552 4555555555554443 33556666666666655555444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-18 Score=188.77 Aligned_cols=356 Identities=12% Similarity=0.046 Sum_probs=213.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 261 LTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMIS 340 (675)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 340 (675)
...++..+.+. |++++|..+++........ +...+..++......|++++|.+.++++++.. +.+...+..+..
T Consensus 45 ~~~~~~~~~~~---g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~ 118 (656)
T PRK15174 45 IILFAIACLRK---DETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHHhc---CCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 34444444444 6777777777776665433 34444455556666777777777777776543 334455666667
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 341 GYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQE 420 (675)
Q Consensus 341 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 420 (675)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+.+.|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHH
Confidence 7777777777777777776641 2235566666777777777777777777665543 2223333232 23566777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 044815 421 AYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKE----SEKFFQ 496 (675)
Q Consensus 421 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~ 496 (675)
|...++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 77777776655433344444445566667777777777777766653 3345666666777777777664 666777
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044815 497 EAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP 575 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 575 (675)
++.+... .+...+..+...+.+.|++++|+..+++..+. .|+ ...+..+..++.+.|++++|...++++.+. .|
T Consensus 275 ~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 275 HALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 6666532 24556666677777777777777777776663 343 445556666677777777777777776663 34
Q ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhC-CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 576 CEVT-RVTLAYEYCKQGDSATAMIILESLDKK-LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 576 ~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
+... +..++.++...|+.++|...|++..+. |+.. ...+++|...+.++++.-..|
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 4322 233455666677777777777665442 2211 234456666666665554443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-18 Score=189.90 Aligned_cols=164 Identities=11% Similarity=-0.008 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 044815 222 DASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTV 301 (675)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (675)
+.....-.+......|+.++|++++.+..... ..+...+..+...+... |++++|..++++..... +.+...+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~---g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL---KQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 44444445555566666666666666665421 12333455555555554 56666666666655542 123444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG 381 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 381 (675)
++..+...|++++|+..++++++.. +.+.. +..+...+...|+.++|+..++++.+.... +...+..+...+...+
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 6666666666666666666665542 23333 555566666666666666666666654222 3444444555555566
Q ss_pred CHHHHHHHHHHHh
Q 044815 382 NFERAYDLMDLMG 394 (675)
Q Consensus 382 ~~~~A~~~~~~m~ 394 (675)
..++|++.++...
T Consensus 165 ~~e~Al~~l~~~~ 177 (765)
T PRK10049 165 LSAPALGAIDDAN 177 (765)
T ss_pred ChHHHHHHHHhCC
Confidence 6666666665444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-18 Score=188.95 Aligned_cols=335 Identities=12% Similarity=0.052 Sum_probs=274.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
......++..+.+.|+.++|..++...+... +-+...+..++.+....|++++|...++++.+... .+...+..+..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~ 118 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVAS 118 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 3345567788899999999999999987754 34455666777777889999999999999998532 25678888899
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHH
Confidence 9999999999999999999864 4567788899999999999999999999887764433 3333333 34788999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----HHHHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISS----AVKYFQ 531 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~ 531 (675)
|...++.+.+....++...+..+...+.+.|++++|...++++.+... .+...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 999999988765344455566667888999999999999999998753 467788889999999999986 899999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC
Q 044815 532 RMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KLW 608 (675)
Q Consensus 532 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 608 (675)
+..+. .|+ ...+..+...+...|++++|...++++++ ..|+. .....++.+|.+.|++++|...++++.. .|+
T Consensus 275 ~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 275 HALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99884 454 67888999999999999999999999998 45554 5567789999999999999999999775 344
Q ss_pred h-hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 609 I-RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 609 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
. ..+..++.++...|+.++|+..|+++++..|+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 3 33455677899999999999999999999886
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-16 Score=172.62 Aligned_cols=434 Identities=12% Similarity=0.049 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHH-H
Q 044815 188 TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADA--SSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTL-L 264 (675)
Q Consensus 188 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 264 (675)
+.+-..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|...+++... |+...+.. +
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~ll 106 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLA 106 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHH
Confidence 3333333445668899999999998888763 442 233 777778888999999988888872 22222222 2
Q ss_pred --HHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 044815 265 --ITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGY 342 (675)
Q Consensus 265 --l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 342 (675)
...+... |++++|+++++++.+.... +...+..++..+...++.++|++.+.++.+. .|+...+..++..+
T Consensus 107 alA~ly~~~---gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~ 179 (822)
T PRK14574 107 SAARAYRNE---KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHH
Confidence 3344444 7888999999988887543 4666777788888888888888888887654 35555564444444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH----HHHHHh----
Q 044815 343 CKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAI----IDGLCK---- 414 (675)
Q Consensus 343 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----i~~~~~---- 414 (675)
...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++.++-... + +......+ +.-..+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHHHHHHHHHHhhccc
Confidence 44666666888888888763 225667777888888888888888776653322 1 11111111 000111
Q ss_pred -----cCC---HHHHHHHHHHHHhCC-CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 415 -----KGR---VQEAYELLKKAFQRE-LQAD-KITY----TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIA 480 (675)
Q Consensus 415 -----~g~---~~~A~~~~~~~~~~~-~~~~-~~~~----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 480 (675)
.++ .+.|+.-++.+...- ..|. ...| .-.+-++...++.+++++.++.+...+.+....+-..+.+
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 111 222333333333211 1111 1111 1223344455555555555555555443333344455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CC--CH
Q 044815 481 AFCRQKKMKESEKFFQEAITAGL-----FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGC-----------AP--DN 542 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p--~~ 542 (675)
+|...+++++|..++.++..... .++......|..+|...+++++|..+++++.+... .| |-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 55555555555555555543221 11222234455555555555555555555544100 01 11
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 543 -ITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 543 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
..+..++..+...|+..+|++.++++.. ..| |......++..+...|...+|.+.++.... +.+..+....+..
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 1222233344445555555555555544 222 223334444555555555555555544322 2233334444444
Q ss_pred HHccCCHHHHHHHHHHHhcCCCC
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+...|++++|..+.+++++..|+
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCC
Confidence 44455555555555555444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-17 Score=180.10 Aligned_cols=408 Identities=10% Similarity=0.042 Sum_probs=268.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044815 158 CMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMG 237 (675)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 237 (675)
..+....-.|+.++|++++.+..... +.....+..+...+.+.|++++|.++|++..+.. +.+...+..++.++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34555667788888888888887633 5566678889999999999999999999988763 446777788888999999
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 044815 238 RVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFR 317 (675)
Q Consensus 238 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 317 (675)
++++|...++++.+... .+.. +..+...+... |+.++|+..++++.+.... +...+..+...+...|..++|++
T Consensus 98 ~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~---g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 98 QYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRA---GRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHC---CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 99999999999988632 2344 66666666665 7899999999999887433 55666778888888899999998
Q ss_pred HHHHHHhcCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHH
Q 044815 318 LFLKLVRSDNYKPNV------HTYTAMISGYC-----KEEKM---NRAEMLLERMKEQ-GLLPNTN-TY----TSLIYGH 377 (675)
Q Consensus 318 ~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~ 377 (675)
.+++... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+..+
T Consensus 172 ~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 8876543 2321 01111222221 12233 6677777777753 2222221 11 1113344
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 044815 378 CKVGNFERAYDLMDLMGKEGCT-PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA---DKITYTILLSEHLKQAET 453 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 453 (675)
...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+..... .......+..++.+.|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 5668888888888888776522 221 22235667888888888888888877643221 123455566677788888
Q ss_pred HHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 044815 454 KQALGLFCRMVKAGL-----------NPD---IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR 519 (675)
Q Consensus 454 ~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 519 (675)
++|...++.+.+... .|+ ...+..+...+...|++++|.++++++....+ .+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 888888888776521 122 12344556666677777777777777766532 345666677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044815 520 DGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTL 583 (675)
Q Consensus 520 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 583 (675)
.|++++|++.+++..+. .|+ ...+...+..+...|++++|+.+++++++ ..|+......+
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 77777777777777663 354 44555555566677777777777777776 44555444333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-15 Score=164.07 Aligned_cols=441 Identities=11% Similarity=0.065 Sum_probs=318.7
Q ss_pred hhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 044815 149 FERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLIT-STLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYK 227 (675)
Q Consensus 149 ~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 227 (675)
...+...|+..| ..++.|+++.|+..|++..+.. |.+. .++ .++..+...|+.++|+..+++.... .........
T Consensus 31 p~~~~~~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLI-IRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLA 106 (822)
T ss_pred ccchhHHHHHHH-HHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHH
Confidence 334444555444 4689999999999999999875 3332 344 8888889999999999999998732 122333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 044815 228 LMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLC 307 (675)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (675)
.+...+...|++++|.++|+++.+.... +...+..++..+... ++.++|++.++++... .|+...+..++..+.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~---~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~ 180 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADA---GRGGVVLKQATELAER--DPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHhccc--CcchHHHHHHHHHHH
Confidence 4466888899999999999999987543 455555666666665 7999999999999876 455555655544554
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhc-----
Q 044815 308 KKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTY--TSLIYGHCKV----- 380 (675)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~----- 380 (675)
..++..+|++.++++++.. +.+...+..++..+.+.|-...|.++..+-... +.+...-+ ...+.-..+.
T Consensus 181 ~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred hcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccccc
Confidence 5677767999999998864 446777788889999999999998777663321 22222111 0111111211
Q ss_pred ----CC---HHHHHHHHHHHhhc-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 381 ----GN---FERAYDLMDLMGKE-GCTPN-IYAY----NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 381 ----g~---~~~A~~~~~~m~~~-g~~~~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.+ .+.|+.-++.+... +-.|. ...| .-.+-++...|++.++++.++.+...+.+....+-..+..+|
T Consensus 258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 12 34455555555542 21232 2222 234567788999999999999999888666667888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC--H-h
Q 044815 448 LKQAETKQALGLFCRMVKAG-----LNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-----------FPT--K-E 508 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~--~-~ 508 (675)
...+++++|+.+++.+.... ..++......|.-++...+++++|..+++++.+... .|+ - .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 99999999999999997653 123444467888999999999999999999987321 122 1 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEY 587 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 587 (675)
.+..++..+...|+..+|.+.++++.... +-|......+...+...|.+.+|++.++.+.. +.|+. .+....+.++
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHH
Confidence 34456777889999999999999998753 44678889999999999999999999987776 45654 4556788899
Q ss_pred HHcCCHHHHHHHHHHHhh
Q 044815 588 CKQGDSATAMIILESLDK 605 (675)
Q Consensus 588 ~~~g~~~~A~~~~~~~~~ 605 (675)
...|++++|..+.+.+..
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 999999999999988765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-14 Score=136.46 Aligned_cols=315 Identities=15% Similarity=0.221 Sum_probs=233.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHHhhCC-------------------CC
Q 044815 163 FAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIAC--ELGLVEYA-EEVFDEMCARG-------------------VC 220 (675)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~~-------------------~~ 220 (675)
....|..+++.-+|+.|...|++.+...-..|++..+ ...++--| ++.|-.|...| .+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 3456888888889999999988888776666665432 21111111 12222222221 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 044815 221 ADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHT 300 (675)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (675)
....++..||.++|+--..+.|.++|++-.....+.+..+||.+|.+-.- ....+++.+|....+.||..|+|
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-------~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-------SVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-------hccHHHHHHHHHhhcCCchHhHH
Confidence 46788999999999999999999999999888888899999999987543 33478999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH---HhcCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc----CC---CC-CHH
Q 044815 301 VLIDGLCKKGWTEKAFRLFLKL---VRSDNYKPNVHTYTAMISGYCKEEKMNR-AEMLLERMKEQ----GL---LP-NTN 368 (675)
Q Consensus 301 ~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~----g~---~p-~~~ 368 (675)
+++.+..+.|+++.|.+.+.++ ++.-|+.|...+|..+|..+++.++..+ |..++.++... .+ .| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999999988876555443 2557899999999999999999888755 44445554432 22 23 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044815 369 TYTSLIYGHCKVGNFERAYDLMDLMGKEG----CTPN---IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYT 441 (675)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 441 (675)
-|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+....+.-+..|+.|+-+-..|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 66778888889999999988876654321 2233 2346678888899999999999999998877888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 442 ILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 442 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
.++++....++++-.-++|.+++..|..-.......++..+|+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 9999999999999999999999887755444444444444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-16 Score=146.80 Aligned_cols=470 Identities=12% Similarity=0.080 Sum_probs=286.5
Q ss_pred CChHHHHHHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH-------------
Q 044815 95 LTHEQAITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS------------- 161 (675)
Q Consensus 95 l~~~~~~~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~------------- 161 (675)
||+.++..+......+....+||..+.-+.+..-|+.....-..++.++.+.++|..|.+.|+..+.
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 5666555555545445556788888888888888887777777788888888889888888775332
Q ss_pred ------HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC------------H
Q 044815 162 ------SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD------------A 223 (675)
Q Consensus 162 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~ 223 (675)
.|.+.|++++|+..|+...+.. |+..+-..|+-++...|+-++..+.|.+|+..-..+| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 3556666666666666655543 5554444444455556666666666666654321121 1
Q ss_pred HHHHHHHH-----HHHHcCC--HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCh
Q 044815 224 SSYKLMVV-----AYCRMGR--VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNV 296 (675)
Q Consensus 224 ~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (675)
...+-.|. -+-+.++ .++++-.-.+++.--+.|+.. --.+-+++.++.-....+..+.
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa---------------~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA---------------AGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---------------cccHHHHHHHHHhhhhhhhhhh
Confidence 11111111 0000000 001111111111110111100 0011111111111110000011
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK-EEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
--.-..-|.+.|+++.|++++.-+.++.+-..+...-|.-+-.|.+ -.++..|..+-+..+... .-|....+.-..
T Consensus 422 --ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn 498 (840)
T KOG2003|consen 422 --EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGN 498 (840)
T ss_pred --hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCc
Confidence 0112335788999999999986665443322222222222222222 345677777666655431 123333333333
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
.-...|++++|.+.|++.....-.-....| .+.-.+-..|++++|++.|-++... ...+..+...+.+.|....+..+
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 344678999999999998876322222223 2344567789999999999887643 34567778888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
|++++.+.... ++.|+.....|...|-+.|+-.+|.+.+-+--+. ++-+..+...|..-|....-+++|+.+|++..-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99998777654 5668889999999999999999999887665543 456888889999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 044815 536 IGCAPDNITYGALISGL-CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQG 591 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 591 (675)
+.|+..-|..++..| .+.|++++|..+|+...++ ++.|.....-|+......|
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 689999998877654 6789999999999998764 4445555555666555554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-13 Score=133.62 Aligned_cols=487 Identities=11% Similarity=0.059 Sum_probs=380.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTE 241 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (675)
+-......++|.-++.+..+. ++.+...|. +|++..-++.|.++++...+. ++-+...|-+....=-.+|+.+.
T Consensus 385 aAVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHH
Confidence 444556667788888877765 344444444 566778899999999998875 57788889887777778899988
Q ss_pred HHHHHHH----HhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHH
Q 044815 242 ADRWLSA----MLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKP--NVYTHTVLIDGLCKKGWTEKA 315 (675)
Q Consensus 242 A~~~~~~----m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 315 (675)
...+.++ +...|+..+...|-.=...|-.. |..-.+..+....+.-|++. -..||+.-...|.+.+.++-|
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a---gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDA---GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc---CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 8888765 44568888888887777777776 67888888888888877653 345788888899999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044815 316 FRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGK 395 (675)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (675)
..+|...++.. +.+...|......--..|..++...+|++.... ++-....|......+-..|++..|..++....+
T Consensus 536 rAVya~alqvf--p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 536 RAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99998887754 455667777776666789999999999999886 444566677777778889999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044815 396 EGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAY 475 (675)
Q Consensus 396 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 475 (675)
.. +.+...|-.-+........++.|..+|.+... ..++...|..-+...--.++.++|++++++.++. ++.-...|
T Consensus 613 ~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~ 688 (913)
T KOG0495|consen 613 AN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLW 688 (913)
T ss_pred hC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHH
Confidence 75 44677888888888999999999999999876 4677778877777778889999999999998886 34446788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ 555 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 555 (675)
..+.+.+-+.++++.|...|..-.+. ++-....|-.|...--+.|..-.|..++++..-.+ +-|...|...|+.-.+.
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRA 766 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHc
Confidence 89999999999999999998766553 33345677778777788899999999999987754 34677899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 556 SKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 556 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
|+.++|..+..++++. -|+. ..+..-+...-+-++--.....+.+.. .++....++...+....+++.|++.|.+
T Consensus 767 gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred CCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888873 2333 344445555555555445555554443 3555677788888889999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 635 LLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 635 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+++.+++ +..+|.-+...+.+.|.-++-.++++++.
T Consensus 843 avk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 843 AVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999998 78888888888899998888888887764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-13 Score=137.80 Aligned_cols=371 Identities=14% Similarity=0.121 Sum_probs=202.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
++..|..+.++|...|++.+|+.+|..+....+. -+...|-.+..+|...|.+++|...|++.+... +-+...-..|.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~La 490 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLA 490 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHH
Confidence 4556777777888888888888888877654433 346678888888888888888888888887642 22455566677
Q ss_pred HHHHhcCCHHHHHHHHHHHhh--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----C--------
Q 044815 375 YGHCKVGNFERAYDLMDLMGK--------EGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRE-----L-------- 433 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~--------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~-------- 433 (675)
..+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+.++-...-..|+... +
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r 570 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKR 570 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 777888888888888877542 2234444444455566666776665444333322110 0
Q ss_pred ---------CCCHH-------------------------------------------HHHHHHHHHHhcCCHHHHHHHHH
Q 044815 434 ---------QADKI-------------------------------------------TYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 434 ---------~~~~~-------------------------------------------~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
..... .+.-++..+++.+++++|+.+..
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 571 RRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred HHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 00001 11223334444455555555544
Q ss_pred HHHHcCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 462 RMVKAGL-NPDIH----AYTTLIAAFCRQKKMKESEKFFQEAITA-GLF---PTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 462 ~m~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
.+.+... .-+.. .-...+.+.+..+++..|...++.|... +.. --...||...+.+.+.++-.--.+++..
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443311 00111 1122233334445555555555544432 000 1122333333333333322222222222
Q ss_pred HHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc--C--------CHHHHHHH
Q 044815 533 MNQIGCAPD--NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ--G--------DSATAMII 599 (675)
Q Consensus 533 m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~--g--------~~~~A~~~ 599 (675)
... ..|+ ...+....+.+...+.+..|++.+-++.. ..|+ +.+-..++.++... + ..-.+..+
T Consensus 731 ~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 731 LLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred Hhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 1111 11112222233455678888888777776 4455 33333344333321 1 12334455
Q ss_pred HHHHhhC--C--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-----------CHHHHHHHHHHHHhcCchhHHH
Q 044815 600 LESLDKK--L--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-----------DRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 600 ~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
+.+..+. . ...++..++++|-..|-..-|..+|+++++..|.+ -...-.+|.-+|..+|+.+.|.
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lAr 886 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLAR 886 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHH
Confidence 5444331 1 34566779999999999999999999999885421 1223456777899999999999
Q ss_pred HHHHHHH
Q 044815 665 DLSQRIA 671 (675)
Q Consensus 665 ~~~~~~~ 671 (675)
+++++-+
T Consensus 887 qil~kyl 893 (895)
T KOG2076|consen 887 QILEKYL 893 (895)
T ss_pred HHHHhhc
Confidence 9998753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-13 Score=138.99 Aligned_cols=329 Identities=14% Similarity=0.165 Sum_probs=207.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTE 241 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (675)
.|++ |++++|..++.+.++.. +.+...|..|..+|-..|+.+++...+-...... +.|..-|..+.....+.|++++
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3444 88888888888887775 5667778888888888888888877766665543 4466778877777788888888
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHHH
Q 044815 242 ADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVY----THTVLIDGLCKKGWTEKAFR 317 (675)
Q Consensus 242 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~ 317 (675)
|.-.|.+.++... ++...+-.-...|.+. |+...|..-|.++.....+.|.. .-...+..+...++-+.|.+
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~---G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKT---GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHh---ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888877642 2333333344445554 67778887777777653322222 22233455666676677777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---------------------------CHHHH
Q 044815 318 LFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP---------------------------NTNTY 370 (675)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---------------------------~~~~~ 370 (675)
.++......+-.-+...++.++..+.+...++.|......+......+ +...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 777776644445556667777777777777777777776666522222 22221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGC--TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHL 448 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 448 (675)
-++-++......+....+.....+..+ .-+...|.-+..+|...|++.+|+.+|..+.....-.+...|-.+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122233334444444444444444442 23355666677777777777777777777776544455667777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 449 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 499 (675)
..|..++|.+.++..+... +.+...-..|...+-+.|+.++|.+.+..+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 7777777777777776653 3345555566666677777777777776643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-15 Score=139.29 Aligned_cols=472 Identities=13% Similarity=0.082 Sum_probs=320.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYK-LMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
+-.++..|..-|.....+.+|+..|+-+.+...-|+.-... .+...+.+..++.+|+.+|+..+..-...+..+-..++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 33455556667777888999999999988766666654433 23457788889999999998877653333333333232
Q ss_pred ----HHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------CC
Q 044815 266 ----TAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNY-----------KP 330 (675)
Q Consensus 266 ----~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~ 330 (675)
..+.+. |.++.|+.-|+...+. .||..+-..|+-++...|+-++..+.|.+++...+. .|
T Consensus 280 ~nigvtfiq~---gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 280 NNIGVTFIQA---GQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred hhcCeeEEec---ccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 233443 8899999999987765 578777666777777789999999999998764332 23
Q ss_pred CHHHHHHHHH-----HHHhcC--ChHHHHHHHHHHHHcCCCCCHHH---H----------H--------HHHHHHHhcCC
Q 044815 331 NVHTYTAMIS-----GYCKEE--KMNRAEMLLERMKEQGLLPNTNT---Y----------T--------SLIYGHCKVGN 382 (675)
Q Consensus 331 ~~~~~~~li~-----~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~ 382 (675)
+....+.-|. ..-+.+ +-++++-.--++..--+.||-.. | . .-..-+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 3333332221 111111 12222222222222223333210 0 0 11224678999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 383 FERAYDLMDLMGKEGCTPNIYAYNAIIDGLC-K-KGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLF 460 (675)
Q Consensus 383 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 460 (675)
++.|.++++.+.+..-..-...-+.|...+. + ..++..|.++-+..+..+ .-+......-.+....+|++++|.+.+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999999999887643333333333333322 2 446778877776665432 233333333344455689999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044815 461 CRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP 540 (675)
Q Consensus 461 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 540 (675)
++....+..-....|| +.-.+-..|++++|...|-++... +..+..+.-.+...|-...+..+|++++.+.... ++.
T Consensus 514 keal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPN 590 (840)
T ss_pred HHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCC
Confidence 9998764332233333 334566789999999999877643 2346777888888999999999999999887763 455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKL 619 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~ 619 (675)
|+.....|...|-+.|+-.+|.+.+-.--+. ++-+..+...|+..|....-+++|+.+|++..- .|+..-|..++..|
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 7889999999999999999999887665441 334567888899899999999999999999654 68888898877665
Q ss_pred -HccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 620 -CSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 620 -~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
.+.|+++.|..+|+..-.+-|. |..++..|++.+...|- .+|.++..++
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 5699999999999999888888 99999999999998885 3444444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-12 Score=126.43 Aligned_cols=471 Identities=13% Similarity=0.035 Sum_probs=383.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHH
Q 044815 160 VSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEM----CARGVCADASSYKLMVVAYCR 235 (675)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~ 235 (675)
.-+|++..-++.|..++...++. +|.+...|..-...=-..|+.+...++.++- ...|+..+...|-.=...+-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34788889999999999999876 7889999988877777899999998888764 347888899999888888989
Q ss_pred cCCHHHHHHHHHHHhHCCCCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 044815 236 MGRVTEADRWLSAMLDRGAIL--DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTE 313 (675)
Q Consensus 236 ~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 313 (675)
.|.+-.+..+....+..|+.- -..||..--..|.+. +.++-|..+|....+- ++.+...|......--..|..+
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~---~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR---PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc---chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHH
Confidence 999999999999988887753 246777777888886 7899999999998875 3335667777776666789999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLM 393 (675)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (675)
+-..+|++.+.. ++.....|-.....+-..|+...|..++.+..+.... +...|..-+..-....++++|..+|.+.
T Consensus 568 sl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 568 SLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999998764 4556666777777788899999999999999886443 7788999999999999999999999998
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 044815 394 GKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH 473 (675)
Q Consensus 394 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 473 (675)
... .|+..+|..-+...--.+..++|.+++++.++. ++.-...|-.+.+.+.+.++.+.|.+.|..-.+. ++..+.
T Consensus 645 r~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 645 RSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred hcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 875 578888877777777789999999999998875 3333457888899999999999999988776665 455677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 553 (675)
.|..|...--+.|.+-.|..++++..-.++ .+...|-..|..-.+.|+.+.|..+..+..+. ++.+...|..-|....
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 888888888889999999999999988775 57889999999999999999999999988774 6666778888887776
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHH
Q 044815 554 KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALF 631 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (675)
+.++--.....+++. .-|+.....++..+....++++|.+.|.+..+. +.-.+|..+...+.+.|.-+.-.++
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 766644444333332 235667788889999999999999999998763 3456888888899999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHH
Q 044815 632 FHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 632 ~~~~~~~~~~p~~~~~~~l 650 (675)
+.+.....|. ....|.++
T Consensus 874 ~~~c~~~EP~-hG~~W~av 891 (913)
T KOG0495|consen 874 LKKCETAEPT-HGELWQAV 891 (913)
T ss_pred HHHHhccCCC-CCcHHHHH
Confidence 9999888887 55555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-13 Score=128.88 Aligned_cols=427 Identities=16% Similarity=0.207 Sum_probs=302.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHH-HHHHHHHHHhHCCCCCCHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA--YCRMGRVT-EADRWLSAMLDRGAILDNATLTL 263 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~-~A~~~~~~m~~~g~~~~~~~~~~ 263 (675)
.+.+=+.|+.. ..+|.+.++.-+|+.|...|++.+...--.|... |....++- .-++.|-.|...|-. ...+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 34556666654 4688999999999999999988888877777763 33333333 234566666665533 12221
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 264 LITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYC 343 (675)
Q Consensus 264 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 343 (675)
+. |.+.+ ++-+.. +-+..+|..+|.++|+--..+.|.+++++.-. ...+.+..+||.+|.+-.
T Consensus 191 ------K~---G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S 253 (625)
T KOG4422|consen 191 ------KS---GAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASS 253 (625)
T ss_pred ------cc---ccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHH
Confidence 11 34333 333322 23678999999999999999999999988754 335788889999987644
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 344 KEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFER----AYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQ 419 (675)
Q Consensus 344 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 419 (675)
- ..-.+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..
T Consensus 254 ~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 254 Y----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred h----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 2 2237899999999999999999999999999998765 5678899999999999999999999999988865
Q ss_pred H-HHHHHHHHHh----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHH
Q 044815 420 E-AYELLKKAFQ----RELQ----ADKITYTILLSEHLKQAETKQALGLFCRMVKAG----LNPD---IHAYTTLIAAFC 483 (675)
Q Consensus 420 ~-A~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~---~~~~~~li~~~~ 483 (675)
+ |..++.++.. +.++ .|...+...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 4 4445555443 2222 245567778888888899888888876554321 2333 234667888889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH----
Q 044815 484 RQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS-KL---- 558 (675)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~---- 558 (675)
+....+.-...|+.|+-.-..|+..+...++++..-.|+++-.-++|..++..|...+......++..+++.. .+
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 9999999999999999877778999999999999999999999999999998876555555555555555443 11
Q ss_pred ----H-----HHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----hhhHH---HH
Q 044815 559 ----D-----EACQFYE-------SMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLW----IRTVN---TL 615 (675)
Q Consensus 559 ----~-----~A~~~~~-------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~---~l 615 (675)
. -|..+++ +|....+. ....+.++..+.+.|+.++|.+++.-+.++.+ ....| -+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 0 0111111 22222333 34566677788899999999999998855432 22344 34
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
++.-...+....|+.+++-|...+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 4555567788888888888765544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-12 Score=120.50 Aligned_cols=454 Identities=14% Similarity=0.101 Sum_probs=275.9
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHH
Q 044815 199 CELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIK 278 (675)
Q Consensus 199 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~ 278 (675)
-.++++..|..+|++..... ..+...|--.+.+=.++..+..|..++++.+..=...|..-| ..+..--.. |++.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~L---gNi~ 158 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEML---GNIA 158 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHh---cccH
Confidence 34555666777777766543 345556666666666677777777777776654222222222 222221222 6777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 279 QAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERM 358 (675)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 358 (675)
.|.++|+.-.+ +.|+...|.+.|+.-.+-..++.|..++++.+- +.|++.+|--....-.+.|....|..+|+..
T Consensus 159 gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 159 GARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 77777777665 467777777777777777777777777777654 3477777777776667777777777777776
Q ss_pred HHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHH--------HHH
Q 044815 359 KEQ-GL-LPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN--IYAYNAIIDGLCKKGRVQEAYE--------LLK 426 (675)
Q Consensus 359 ~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~--------~~~ 426 (675)
.+. |- .-+...++++...-.+...++.|.-+|+-.... ++.+ ...|..+...--+-|+.....+ -++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 653 10 011223334443334556677777777766654 2222 3444444444444454332222 233
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHH
Q 044815 427 KAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH-------AYTTLIAAF---CRQKKMKESEKFFQ 496 (675)
Q Consensus 427 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~---~~~g~~~~A~~~~~ 496 (675)
++.+.+ +.|-.+|--.++.-...|+.+...++|++.+.+ ++|-.. .|.-+--++ ....+++.+.++|+
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344332 456667777777777778888888888887765 344211 111111111 24677888888888
Q ss_pred HHHHCCCCCCHhHHHHH----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 497 EAITAGLFPTKETYTSM----ICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
..++. ++....||..+ ..-..++.+...|.+++...+ |.-|...+|...|..=.+.+++|.+..+|++.++
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-- 465 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-- 465 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 87773 22233344333 333346777888888887765 4567777888888777788888888888888888
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 573 ISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKKLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 573 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
..|. ..++...+..=...|+.+.|..+|+-+...|. ...|.+.|+.-...|.++.|..+|+++++...- ...|
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvW 543 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVW 543 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHH
Confidence 3342 35556566666677888888888887766552 345677777777788888888888888776543 3355
Q ss_pred HHHHHHHH-----hcC-----------chhHHHHHHHHHHh
Q 044815 648 AALKNACY-----ESN-----------KYALFSDLSQRIAE 672 (675)
Q Consensus 648 ~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 672 (675)
.+.+.--. +.| +...|+.+++++..
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 55544332 334 55667777776643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=156.88 Aligned_cols=261 Identities=18% Similarity=0.173 Sum_probs=114.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQRE-LQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
.+...+.+.|++++|++++++..... .+.|...|..+.......++.+.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778888899999999997655443 3445566666777777889999999999999876533 56667777777 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG-CAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876653 567778888899999999999999999977532 345677888899999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 565 YESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 565 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+++.++ ..|+ ......+++.+...|+.+++..+++...+. .++..|..++.++...|+.++|+.+|+++.+.+|.
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999999 6676 455678999999999999988888887653 46677899999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHhcc
Q 044815 642 VDRVSLAALKNACYESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 642 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 674 (675)
|+.++..++.++.+.|+.++|.++..++.+.+
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp --HHHHHHHHHHHT-------------------
T ss_pred -cccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999988754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-11 Score=115.30 Aligned_cols=456 Identities=11% Similarity=0.080 Sum_probs=330.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRW 245 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (675)
.+++..|..+|+..+... ..+...|...+.+=.+...+..|..++++....- +.-...|.-.+.+=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHH
Confidence 455667777788777665 3456677778888888999999999999988752 22334455555555667999999999
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 246 LSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 246 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
|++-.+ ..|+...|...|..-.+. +.++.|..+++..+-. .|++.+|-.....-.+.|.+..|..+|+..++.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRy---keieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRY---KEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHh---hHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999876 579999999999888776 7899999999998764 589999999999889999999999999988775
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHh
Q 044815 326 DNYK-PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN--TNTYTSLIYGHCKVGNFERAYDL--------MDLMG 394 (675)
Q Consensus 326 ~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~ 394 (675)
-|-. .+...+.+....-.+...++.|.-+|+-.++. ++.+ ...|..+...--+-|+.....+. |+.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 4321 11223344444334567788888888888775 3334 34455555444445554333322 44455
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHH--------HHHHhcCCHHHHHHHHHHHH
Q 044815 395 KEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI--TYTILL--------SEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 395 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li--------~~~~~~~~~~~A~~~~~~m~ 464 (675)
+.+ +.|-.+|--.++.-...|+.+...++|++++.. ++|-.. .|...| -.-....+++.+.++++..+
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 544 567778888888888889999999999999876 344221 122222 12234688999999999998
Q ss_pred HcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044815 465 KAGLNPDIHAYTTLIAAF----CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP 540 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 540 (675)
+. ++....||.-+--+| .++.++..|.+++..++. ..|-..+|...|..-.+.+++|.+.+++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 84 455556665544444 578899999999998875 46889999999999999999999999999999864 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CChhhHHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGI-SPCEVTRVTLAYEYCKQGDSATAMIILESLDKK-LWIRTVNTLIRK 618 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~ 618 (675)
|-.+|......=...|+.+.|..+|+-++.... ..-...+.+.+.-=...|.++.|..+++++... +...+|-+++..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 567888888877889999999999999987532 111244455666666899999999999998764 455677666654
Q ss_pred HH-----ccC-----------CHHHHHHHHHHHhc
Q 044815 619 LC-----SEK-----------RVGMAALFFHKLLG 637 (675)
Q Consensus 619 ~~-----~~g-----------~~~~A~~~~~~~~~ 637 (675)
-. +.| +...|..+|+++..
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 33 344 66788888887754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-13 Score=130.38 Aligned_cols=480 Identities=12% Similarity=0.058 Sum_probs=217.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 044815 157 QCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRM 236 (675)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 236 (675)
..+++-+....++..|.-+-+++...+ .|+...-.+..++.-.|+++.|..+...-.-. ..|..+......++.+.
T Consensus 20 ~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 20 RRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHH
Confidence 334444556677888888878877665 45555666788888889999888887765332 35788888888899999
Q ss_pred CCHHHHHHHHHHHhH--CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 044815 237 GRVTEADRWLSAMLD--RGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEK 314 (675)
Q Consensus 237 g~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 314 (675)
.++++|..++..-.. ..+.-+..+- .... ..+.+. ++. ++......+-.-...|....+.++
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~---~~~l-------~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDA---ANTL-------ELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhh---hcee-------ccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 999999988773200 0010011100 0000 000000 000 000011111112233444445555
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 044815 315 AFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGL----LPNTNTYTSLIYGH-CKVGNFERAYDL 389 (675)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~-~~~g~~~~A~~~ 389 (675)
|...|.+.+. .|...|..+...-.. .+-.+.+.++.+..... .-+......+.... ++..+ +.....
T Consensus 160 ar~~Y~~Al~-----~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r 231 (611)
T KOG1173|consen 160 ARDKYKEALL-----ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTR 231 (611)
T ss_pred HHHHHHHHHh-----cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-cccccc
Confidence 5555554432 333333332221111 01111111111111100 00111111111111 00000 000000
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044815 390 MDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLN 469 (675)
Q Consensus 390 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 469 (675)
-.+..-.+..-+........+-+...+++.+..++++...+.. ++....+-.-|..+.+.|+..+-..+=.++++. .+
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence 0000011122334444444444555555555555555555442 233333333344555555555544444455443 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALI 549 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 549 (675)
....+|-++.--|.-.|+..+|+++|.+....+. .=...|-.+...|.-.|..|+|+..+...-+. ++-...-+-.+.
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 3344555555555555555555555555544321 11234555555555555555555555444331 000111122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------CCChhhHHHHHHHH
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK---------KLWIRTVNTLIRKL 619 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~ 619 (675)
--|.+.++++-|.++|.++.. +.|+ +.....++-.....+.+.+|..+|+.... ..|..+++.|+.+|
T Consensus 388 mey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 234455555555555555544 4342 23334444444555555555555554331 01344455555555
Q ss_pred HccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 620 CSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.+.+++++|+..+++++...|+ |..++.+++-+|...|+.+.|.+.+.|++
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5555555555555555555555 55555555555555555555555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-13 Score=140.62 Aligned_cols=288 Identities=15% Similarity=0.076 Sum_probs=167.7
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 379 KVGNFERAYDLMDLMGKEGCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 457 (675)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3466666666665554432 32 22233334555556666666666666554322222223333455556666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH-H---HHHHHHHcCCHHHHHHHHHHH
Q 044815 458 GLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYT-S---MICGYLRDGNISSAVKYFQRM 533 (675)
Q Consensus 458 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~---li~~~~~~g~~~~A~~~~~~m 533 (675)
..++.+.+.. +-+...+..+...+.+.|++++|.+.+..+.+.+.. +...+. . ...++...+..+++...+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666653 334555666666666666666666666666665442 222221 1 111112222223233344433
Q ss_pred HHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhh--
Q 044815 534 NQIG---CAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR---VTLAYEYCKQGDSATAMIILESLDK-- 605 (675)
Q Consensus 534 ~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~-- 605 (675)
.+.. .+.+...+..++..+...|+.++|.+++++.++. .||.... ..........++.+.+.+.+++..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 3321 1126667777777888888888888888888774 3443311 1112223345677777777777554
Q ss_pred CCCh--hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 606 KLWI--RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 606 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+.++ ....++++.+.+.|++++|.++|+++......|+...+..++..+.+.|+.++|.+++++.++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345 556788888888999999999888544444445667777889999999999999998888765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-13 Score=136.05 Aligned_cols=250 Identities=13% Similarity=0.034 Sum_probs=147.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKI--TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKE 490 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (675)
.+.|+++.|.+.+.++.+. .|+.. ........+...|++++|...++++.+.. +-+...+..+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 22221 11122445555555555555555555543 3345555555566666666666
Q ss_pred HHHHHHHHHHCCCCCCH-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 491 SEKFFQEAITAGLFPTK-------ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQ 563 (675)
Q Consensus 491 A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 563 (675)
|.+++..+.+.+..++. ..|..++.......+.+...++|+.+.+. .+.+......+...+...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666555432211 12222333333344455566666665432 23456667777777777888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 564 FYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 564 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
++++..+. .|+.... ++.+....++.+++++.++...+ +.++..+.++++.+.+.|++++|.+.|+++++..|
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P- 359 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP- 359 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 87777763 3443211 23333455777777777777655 23555667778888888888888888888777654
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 642 VDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 642 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+..++..++.++.+.|+.++|.+++++.+.
T Consensus 360 -~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 -DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677788888888888888888877754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-11 Score=116.20 Aligned_cols=288 Identities=17% Similarity=0.143 Sum_probs=163.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHhcCC
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGC--TPNIYAYNAIIDGLCKKGR 417 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~ 417 (675)
.++-.....+++..-.+.....|++-+...-+-...+.....++++|+.+|+++.+... --|..+|..++-.--. +
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--K 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh--h
Confidence 34444445666666666666666654444444444445556667777777777666521 0134455444432211 1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 418 VQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 418 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
..+.++.+-.-.-.+--+.|..++.+-|.-.++.++|+..|++..+.+ +-....|+.+.+-|....+...|.+-++.
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 111122111111123344556666666666677777777777776654 33455666667777777777777777777
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 498 AITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
+++..+ .|-..|-.|.++|.-.+...-|+-+|++..+ ++| |...|.+|..+|.+.++.++|+..|.+....|-. +
T Consensus 390 Avdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 390 AVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 776543 4566677777777777777777777777666 344 4666777777777777777777777777665432 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CC---hhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDKK------LW---IRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
...+..|+..|-+.++.++|.+.+++-.+. -+ ..+.-.|..-+.+.+++++|-.+..+..
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 355666777777777777777666654331 01 1112224444555666666665554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-12 Score=124.63 Aligned_cols=219 Identities=17% Similarity=0.161 Sum_probs=139.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 412 LCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKES 491 (675)
Q Consensus 412 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (675)
+.-.|+.-.|...|+..++....++. .|--+...|....+.++....|++..+.+ +-++.+|..-..+..-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34467777778888877775433332 26666677788888888888888877765 44666777777777777888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 492 EKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
..-|++.+.... -+...|--+..+..+.++++++...|++.++. .+.-+..|+.....+...+++++|.+.|+..++
T Consensus 414 ~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 888888877542 24555666666666788888888888887764 333467788888888888888888888888877
Q ss_pred CCCCCH-------HHHH--HHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 572 GISPCE-------VTRV--TLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 572 g~~p~~-------~~~~--~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
+.|+. ..+. .++..-. .+++..|.+++++..+ +.....|.+|+....+.|+.++|+++|++...
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44431 1111 1111111 2555555555555443 12334455555555555555555555555433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-11 Score=116.09 Aligned_cols=383 Identities=17% Similarity=0.144 Sum_probs=228.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC--
Q 044815 218 GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN-- 295 (675)
Q Consensus 218 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 295 (675)
+...|...+-.....+-+.|..+.|...|......- +..-..|..|...+ .+.+. ....... ...|
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li------t~~e~----~~~l~~~-l~~~~h 226 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI------TDIEI----LSILVVG-LPSDMH 226 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh------chHHH----HHHHHhc-Ccccch
Confidence 334455555555556667777777777777766531 11222333332222 12222 2222211 1111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGL--LPNTNTYTSL 373 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l 373 (675)
...--.+..++-...+.+++.+-.+.... .|++.+...-+....+.....++++|+.+|+++.+... .-|..+|..+
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 11112234455555666777666555533 44444444444445555567788888888888877521 1256677766
Q ss_pred HHHHHhcCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044815 374 IYGHCKVGNFERAYDLMDLM-GKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452 (675)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 452 (675)
+-. +..+-. +..+.+- .+.+ +--+.|...+.+-|.-.++.++|...|++.++.+ +.....|+.+..-|....+
T Consensus 306 LYv--~~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 306 LYV--KNDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHH--HhhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcc
Confidence 533 322211 1122111 1111 2234566677777777888888888888887754 3345667777888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
...|++-++..++-+ +.|-..|-.|.++|.-.+...=|.-+|+++.+..+ .|...|.+|..+|.+.++.++|++.|.+
T Consensus 380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888887764 55777788888888888888888888888877643 4677888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 533 MNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK----GISPCE--VTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
....| ..+...+..+...+-+.++.++|.+.|++.++. |...+. ....-|+.-+.+.+++++|..+......-
T Consensus 458 ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 458 AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 77755 335567777888888888888888888776652 322221 22223555566777777765544433221
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 607 LWIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 607 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
.-..++|..+++++..
T Consensus 537 ---------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ---------------ETECEEAKALLREIRK 552 (559)
T ss_pred ---------------CchHHHHHHHHHHHHH
Confidence 2234666666666544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-12 Score=130.40 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
++.....+...+...|+.++|.+.+++..+. .|+.... ++.+.+..++.+++++..++..+.. +-|...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4444444555555555555555555555442 1222111 1222223355555555555554421 112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
.|.+.+++++|.+.|+.+.+ ..|+..++..++..+.+.|+.++|.+++++
T Consensus 337 l~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555555 345544444455555555555555444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-11 Score=119.01 Aligned_cols=409 Identities=16% Similarity=0.078 Sum_probs=261.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHc
Q 044815 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLI-TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD-ASSYKLMVVAYCRM 236 (675)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 236 (675)
.-.-|.++|++++|++.+.+.+.. .|+ +.-|.....+|...|+++++.+--.+..+. .|+ +..+.--..++-..
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 344578889999999999998886 466 777888899999999999999988888775 343 33344444567777
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHH-cC--CCCChhhHHHHHHH
Q 044815 237 GRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIK--------QAFELLEEMVR-KG--WKPNVYTHTVLIDG 305 (675)
Q Consensus 237 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~--------~a~~~~~~~~~-~~--~~~~~~~~~~l~~~ 305 (675)
|++++|+.= +|...++.++... ...- .|....++-.+ .+ .-|......+....
T Consensus 197 g~~~eal~D-------------~tv~ci~~~F~n~---s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 197 GKFDEALFD-------------VTVLCILEGFQNA---SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred ccHHHHHHh-------------hhHHHHhhhcccc---hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 887777632 2222333333221 0111 12222222222 11 12333222222222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHH---cCCCCC---------HHHHHH
Q 044815 306 LCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK-EEKMNRAEMLLERMKE---QGLLPN---------TNTYTS 372 (675)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~---~g~~p~---------~~~~~~ 372 (675)
+... +. ..+.. .+.+.|...-..+-..+.. ...+.+|.+.+.+-.. .....+ ..+...
T Consensus 261 F~~~--~~------~~~~~-~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 261 FHAD--PK------PLFDN-KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred cccc--cc------ccccC-CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 2110 00 00000 0000111111111111111 1234444444433211 001111 112222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044815 373 LIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452 (675)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 452 (675)
-...+.-.|+.-.|.+-|+..++.... +...|-.+..+|....+.++....|.+..+.+ +-++.+|..-.+...-.++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH
Confidence 223344578889999999999987533 33348888889999999999999999998865 4567788888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
+++|..=|++.+... +-+...|..+.-+..+.++++++...|++..++ ++.-+..|+.....+..++++++|.+.|+.
T Consensus 410 ~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 999999999998864 446777878888888999999999999999986 445678999999999999999999999999
Q ss_pred HHHCCCCCC-------HHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 533 MNQIGCAPD-------NITYG--ALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 533 m~~~~~~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
.++. .|+ ...+. .++ .+.-.+++..|..+++++++ +.|. ...+..|+..-.+.|+.++|+++|++
T Consensus 488 ai~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 488 AIEL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHhh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8873 344 11111 111 12234899999999999999 5554 46778899999999999999999998
Q ss_pred Hhh
Q 044815 603 LDK 605 (675)
Q Consensus 603 ~~~ 605 (675)
...
T Consensus 563 sa~ 565 (606)
T KOG0547|consen 563 SAQ 565 (606)
T ss_pred HHH
Confidence 543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-11 Score=110.46 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=85.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044815 164 AEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEAD 243 (675)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 243 (675)
....++..|+.+++--...+-.....+-..+..++.+.|++++|...++.+.+.. .++...+-.|.-++.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3445555555555544433322222334444555666666666666666665532 344445555555555556666666
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 244 RWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLV 323 (675)
Q Consensus 244 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 323 (675)
.+-.+..+ ++.....+++..-+. ++-++-..+.+.+.+ ....--+|.......-.+.+|++++.+.+
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahkl---ndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKL---NDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHh---CcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444322 222223333333333 344444444443332 12223334444444445666666666665
Q ss_pred hcCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHH
Q 044815 324 RSDNYKPNVHTYTAM-ISGYCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 324 ~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~ 360 (675)
... |+....|.. .-+|.+..-++-+.+++.-.++
T Consensus 179 ~dn---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 179 QDN---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred hcC---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 432 444444432 2344455555666666655554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-12 Score=129.27 Aligned_cols=286 Identities=13% Similarity=0.012 Sum_probs=189.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 344 KEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAY 422 (675)
Q Consensus 344 ~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 422 (675)
..|+++.|.+.+.+..+. .|+ ...+-....+....|+++.|.+.+.+..+..-.+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467888888887776654 333 23334445666677888888888877765421122223334567777788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHH
Q 044815 423 ELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYT-TLIAAF---CRQKKMKESEKFFQEA 498 (675)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~---~~~g~~~~A~~~~~~~ 498 (675)
..++.+.+.. +.+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888887764 345566777788888888888888888888877543 332221 111111 2223333333455444
Q ss_pred HHCCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 499 ITAGL---FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNIT---YGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 499 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
.+... +.+...+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk-- 327 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK-- 327 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--
Confidence 44321 137778888888889999999999999988874 354431 11122223445778888888888887
Q ss_pred CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHH--H-hhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 573 ISPCEV---TRVTLAYEYCKQGDSATAMIILES--L-DKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 573 ~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
..|+.. ...++++.+.+.|++++|.+.|+. . ...|+...+..++..+.+.|+.++|.++|++.+.
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345443 456788999999999999999993 3 3467777788899999999999999999988644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-13 Score=133.98 Aligned_cols=286 Identities=17% Similarity=0.146 Sum_probs=219.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 347 KMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEG--CTPNIYAYNAIIDGLCKKGRVQEAYEL 424 (675)
Q Consensus 347 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 424 (675)
+..+|+..|.+..+. +.-.......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885543 22233555677888999999999999999987752 12245667766654432 223333
Q ss_pred HH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044815 425 LK-KAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL 503 (675)
Q Consensus 425 ~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 503 (675)
+. ++++. .+..+.+|-++.+.|.-+++.+.|++.|++.++.+ +-...+|+.+.+-+.....+|.|...|+.++....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 32 33332 35677899999999999999999999999998863 23788999999999999999999999999887422
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 044815 504 FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRV 581 (675)
Q Consensus 504 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 581 (675)
-+...|--+.-.|.++++++.|.-.|++..+. .| +.+....+...+-+.|+.|+|+++++++.. +.| |....+
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKY 561 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHH
Confidence 13334455677899999999999999999884 45 456677777888899999999999999988 444 345556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH
Q 044815 582 TLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
.-+..+...+++++|+..++++.+ +.+...+..++..|.+.|+.+.|+..|--|.+.+|++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 778888899999999999999877 456777888999999999999999999999999988654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-13 Score=134.55 Aligned_cols=278 Identities=15% Similarity=0.084 Sum_probs=223.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL--QADKITYTILLSEHLKQAETKQALGL 459 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~ 459 (675)
+..+|...|....++ +.-+.++...+..+|...+++++|.++|+.+.+..+ ..+..+|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467899999985554 344457778899999999999999999999987532 2355677766543322 223333
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044815 460 F-CRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP-TKETYTSMICGYLRDGNISSAVKYFQRMNQIG 537 (675)
Q Consensus 460 ~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 537 (675)
+ +.+.+.. +-.+.+|.++..+|.-+++.+.|++.|+++++.+ | ...+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 3 3444442 5578999999999999999999999999999854 4 678999999999999999999999999875
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHH
Q 044815 538 CAPDN-ITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVN 613 (675)
Q Consensus 538 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 613 (675)
+.|+. ..|-.+.-.|.+.++++.|+-.|+++++ +.|.. +....++..+.+.|+.|+|+++++++.. +.++..--
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 33432 3555677789999999999999999999 77755 4556788899999999999999999765 34555556
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..+..+...+++++|+..++++.+.-|+ +...+..++.+|-+.|+.+.|..-+.-+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6778888999999999999999999998 899999999999999999999988765543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=141.57 Aligned_cols=258 Identities=17% Similarity=0.140 Sum_probs=86.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 373 LIYGHCKVGNFERAYDLMDLMGKEG-CTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
+...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455556666666666664433322 1223333444444555566666666666666654322 34445555554 5666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAG-LFPTKETYTSMICGYLRDGNISSAVKYF 530 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (675)
++++|..++....+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666655443 2344555666666777777777777777765432 2345666677777777777777777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CC
Q 044815 531 QRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KL 607 (675)
Q Consensus 531 ~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 607 (675)
++..+. .|+ ......++..+...|+.+++.++++...+.. ..|...+..++.+|...|+.++|+.++++..+ +.
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 777763 354 5566667777777777777777777666532 22334556677777777777777777777655 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 608 WIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
++.....++.++.+.|+.++|..+.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566667777777777777777777766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-09 Score=104.49 Aligned_cols=496 Identities=12% Similarity=0.114 Sum_probs=295.7
Q ss_pred HHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044815 163 FAEIGRLKEGFSMVIEMTNNG-LPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTE 241 (675)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (675)
+.++|+...-...|...+..- +......|...+......|-.+-+..++++..+. ++..-+-.|..+++.+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 334444444444555443321 1223356777777777788888899999988865 55557788889999999999
Q ss_pred HHHHHHHHhHCC------CCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHH
Q 044815 242 ADRWLSAMLDRG------AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN--VYTHTVLIDGLCKKGWTE 313 (675)
Q Consensus 242 A~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 313 (675)
|.+.+...+... .+.+.-.|..+-....+..+.+.--....++..+... -+| ...|+.|.+-|.+.|.++
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhH
Confidence 999888876542 1223334444444444432111111222333333332 233 347899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------------------hHHHHHHHHHHHHcC---------
Q 044815 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK----------------------MNRAEMLLERMKEQG--------- 362 (675)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------------------~~~A~~~~~~m~~~g--------- 362 (675)
+|..+|++.+..- ..+..|..+.+.|..-.. ++-...-|+.+...+
T Consensus 266 karDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 266 KARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999887642 344445555555543211 122223333333221
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 363 --LLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN------IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ 434 (675)
Q Consensus 363 --~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 434 (675)
-+.++..|..-+.. ..|+..+-...|.+..+. +.|. ...|..+.+.|-..|+++.|..+|++..+-..+
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 11133334333322 346677777778777653 1221 345778899999999999999999998765433
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 435 AD---KITYTILLSEHLKQAETKQALGLFCRMVKAGL-----------NP------DIHAYTTLIAAFCRQKKMKESEKF 494 (675)
Q Consensus 435 ~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~p------~~~~~~~li~~~~~~g~~~~A~~~ 494 (675)
.- ..+|..-...-.++.+++.|+++.+.....-- ++ +...|..+++.--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 22 34566666677778899999998877654211 11 223455556666667889999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 044815 495 FQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN-ITYGALISGLCK---QSKLDEACQFYESMIG 570 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 570 (675)
++++++..+. ++.........+-.+.-++++.+.+++-+..--.|+. ..|+..+.-+.+ ...++.|..+|+++++
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999987653 4444333344445566788999999887664334553 356665554432 3468899999999998
Q ss_pred CCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhhCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH
Q 044815 571 KGISPCEVTRVTLAYE--YCKQGDSATAMIILESLDKKL----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 571 ~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
|.+|...-+.-|+.+ =-+-|....|+.+++++...- -...||..|.--...=-+..-..+|+++++.-|+-+.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 555544322222222 224578888888988876532 2334565554433322333445566666666443222
Q ss_pred H-HHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 645 V-SLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 645 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
. .....++.-.+.|..+.|+.++.-..+
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 2 223345555667777777776655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.7e-11 Score=115.38 Aligned_cols=283 Identities=14% Similarity=0.077 Sum_probs=215.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044815 363 LLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTI 442 (675)
Q Consensus 363 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 442 (675)
..-+......-.+-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-+.+=.++.+. .+....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34466666667777778889999999999888764 667777777777888888888888777777775 4566778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 522 (675)
+.--|.-.|+..+|.+.|.+...-+ +.-...|..+.+.|+-.|..++|...+..+.+.- +-....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhcc
Confidence 8888888899999999998876653 2235678889999999999999999988877641 1112223345556788899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK--GISP----CEVTRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~A 596 (675)
.+-|.++|.+.... .+.|+..++-+.-.....+.+.+|..+|+..++. .+.+ -..+++.|+.+|.+++.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999988763 2345777777777777788999999999988731 1111 234678899999999999999
Q ss_pred HHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 597 MIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 597 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
+..+++... +.+..++.+++-.|...|+++.|++.|.+++-..|. |..+-..|.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~-n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD-NIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 999998654 457888999999999999999999999999888876 544444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-11 Score=107.95 Aligned_cols=300 Identities=17% Similarity=0.197 Sum_probs=215.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH--HHHHH
Q 044815 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV--HTYTA 337 (675)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~ 337 (675)
.|-.-++.+.. .+.++|.++|-+|.+... .+..+.-+|.+.|-+.|.+|.|+++-+.++++.+..-+. .....
T Consensus 38 ~Yv~GlNfLLs----~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFLLS----NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHHhh----cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444444444 478888888888887532 256677788899999999999999988887754333222 23456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHH
Q 044815 338 MISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNI----YAYNAIIDGLC 413 (675)
Q Consensus 338 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~ 413 (675)
|..-|...|-+|.|+.+|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 777788899999999999998875432 4556777888999999999999999988877644332 24555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 414 KKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEK 493 (675)
Q Consensus 414 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (675)
...+++.|..++.+..+.+. ..+..--.+.+.....|+++.|++.++...+.+..--..+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 77889999999999887642 33334446777888999999999999999988655556778889999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 044815 494 FFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC---KQSKLDEACQFYESMIG 570 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 570 (675)
.+.++.+.. +....-..+...-....-.+.|..++.+-... +|+...+..++..-. ..|...+-...++.|+.
T Consensus 271 fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 999988864 34444444544444444456666666555442 688888888887643 33456666667777764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.8e-11 Score=112.02 Aligned_cols=283 Identities=16% Similarity=0.089 Sum_probs=175.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 345 EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYEL 424 (675)
Q Consensus 345 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 424 (675)
.|++.+|+++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+..+..-.++...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888877766654442 3345555556667778888888877777653355666666777777777888888777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 425 LKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH-------AYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
+.++.+.+ +.+........++|.+.|++.+...++..|.+.+.-.+.. +|+.+++-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777654 3455666777777777788887777777777776554432 445555555555555554555555
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 044815 498 AITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK-GISPC 576 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~ 576 (675)
..+. ..-++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ..+ -.+.+.++...-.+..+...+. +-.|
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 4433 2334555556666666777777777777666665544441 111 1344555655555555555442 2222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
..+.+|+..|.+.+.+.+|...|+...+ .++...|+-+++++.+.|+..+|.++.++.+
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4556666666666666666666665443 4566666666666666666666666666655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-11 Score=108.29 Aligned_cols=290 Identities=15% Similarity=0.119 Sum_probs=209.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 044815 345 EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEG-CTPN--IYAYNAIIDGLCKKGRVQEA 421 (675)
Q Consensus 345 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 421 (675)
.++.++|.++|-+|.+.. +-...+-.+|.+.|.+.|.+|+|+.+.+.+.+.. .+.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888742 2244555678888888899999999988887642 1111 23345677788889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 422 YELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD----IHAYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
.++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998887653 34455677888899999999999999888887654433 23455666666677899999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 498 AITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
..+.+. ..+..--.+.+.+...|+++.|.+.|+.+.+.+..--..+...|..+|.+.|+.++...++.++.+....+
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-- 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-- 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--
Confidence 988653 24445556778889999999999999999886422224577889999999999999999999999854333
Q ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHhhCCChhhHHHHHHHHH---ccCCHHHHHHHHHHHhcCC
Q 044815 578 VTRVTLAYEYCKQGDSATAMI-ILESLDKKLWIRTVNTLIRKLC---SEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~ 639 (675)
.....+..........+.|.. +.+.+.++|+...+..++..-. ..|+..+-...+++|+...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 333344444334444455554 5566778898888888887654 3556777777777776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-09 Score=109.13 Aligned_cols=406 Identities=11% Similarity=0.001 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 044815 255 ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHT 334 (675)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 334 (675)
..|...|..+.-++... |+++.+.+.|++....-+ -..+.|..+...|...|.-..|..+.+.......-++|...
T Consensus 320 qnd~ai~d~Lt~al~~~---g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRC---GQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred cchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 33555555555555554 567766677766554322 24556666666677777766777666555433221222222
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCC
Q 044815 335 YTAMISGYC-KEEKMNRAEMLLERMKEQ--GL--LPNTNTYTSLIYGHCKV-----------GNFERAYDLMDLMGKEGC 398 (675)
Q Consensus 335 ~~~li~~~~-~~~~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~ 398 (675)
+-..-..|. +.+.+++++++-.+.... |. ......|..+.-+|... ....++.+.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 222222222 245566666655555441 11 11223333333333321 11345566666666544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044815 399 TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTL 478 (675)
Q Consensus 399 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 478 (675)
+.|..+...+.--|...++++.|.+..++..+-+...+...|..+.-.+...+++.+|+.+.+...+.- ..|......-
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 222223233344455566777777777777776656677777777777777777777777776655431 1111111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 044815 479 IAAFCRQKKMKESEKFFQEAITA---------------------G-------LFPTKETYTSMICGYLRDGNISSAVKYF 530 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (675)
++.-...++.+++......+... | ..-...++..+..-.... ...+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhccccc
Confidence 11111233444433332222210 0 000111111111111100 00000000
Q ss_pred HHHHHCCCC--CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 531 QRMNQIGCA--PDN------ITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 531 ~~m~~~~~~--p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
. +...... |+. ..|......+.+.+..++|...+.++.. +.| .+..|+..+..+...|+.++|.+.|.
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 1111111 221 2345566678888999999988888876 333 35667777888999999999999888
Q ss_pred HHhh--CCChhhHHHHHHHHHccCCHHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 602 SLDK--KLWIRTVNTLIRKLCSEKRVGMAAL--FFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 602 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.... +.++.+..+++..+.+.|+..-|.. ++..+++.||. +...|..++..+.+.|+.+.|.+-|..+++
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7543 5577788999999999998777777 99999999999 999999999999999999999999998865
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-09 Score=101.75 Aligned_cols=314 Identities=14% Similarity=0.086 Sum_probs=230.5
Q ss_pred CCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 044815 330 PNVHTYTAMISGYC--KEEKMNRAEMLLERMKEQ-GLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYN 406 (675)
Q Consensus 330 ~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 406 (675)
|...+....+.++. -.++-..|...+--+... -++-|+.....+.+.+...|+.++|+..|+.....+ +-++....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHH
Confidence 33333333344433 344444454444333332 355678888999999999999999999999887653 22233334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK 486 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 486 (675)
...-.+.+.|+.+....+...+.... ......|-.-...+...++++.|+.+-++.++.+ +-+...|-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 44555677899998888888877642 2344445555566677889999999999988865 335666766677888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHH
Q 044815 487 KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALI-SGLC-KQSKLDEACQF 564 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~ 564 (675)
++++|.-.|+.+....+ -+..+|..|+.+|...|++.+|..+-+..... +..+..+.+.+. ..+. ....-++|..+
T Consensus 349 R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999999887542 47889999999999999999999888776552 334555655543 2222 23345889999
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 565 YESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 565 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
++..+. +.|+- .....++..+...|..++++.++++... .+|....+.|++.+...+.+++|+..|..++..+|+
T Consensus 427 ~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~- 503 (564)
T KOG1174|consen 427 AEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK- 503 (564)
T ss_pred HHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-
Confidence 999888 66764 4556788889999999999999999665 578888899999999999999999999999999998
Q ss_pred CHHHHHHHH
Q 044815 643 DRVSLAALK 651 (675)
Q Consensus 643 ~~~~~~~l~ 651 (675)
|..+...+-
T Consensus 504 ~~~sl~Gl~ 512 (564)
T KOG1174|consen 504 SKRTLRGLR 512 (564)
T ss_pred chHHHHHHH
Confidence 877776553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-10 Score=120.48 Aligned_cols=253 Identities=15% Similarity=0.135 Sum_probs=122.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCC
Q 044815 175 MVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGA 254 (675)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 254 (675)
.+..+...|+.|+..||..++..||..|+.+.|- +|.-|..+..+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445566677777777777777777777777776 6776666555556666666666666666655444
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCC-CChh-------------hHHHHHHHHHhcCCHHHHH
Q 044815 255 ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVR----KGWK-PNVY-------------THTVLIDGLCKKGWTEKAF 316 (675)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~-------------~~~~l~~~~~~~g~~~~A~ 316 (675)
.|...||..|+.+|...|+.-.++.+.+.++.+.. .|+. |... .-...+....-.|-.+.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 45666667777776666443334444443333221 1110 0000 0011122222223333333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044815 317 RLFLKLVRSDNYKPNVHTYTAMISGYCK-EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGK 395 (675)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (675)
+++..+.......|-.. .+.-... ...+++-..+.....+ .|+..+|..+++.-...|+.+.|..++.+|.+
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 33322211111111111 1111111 1112222222222221 35555566565555556666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044815 396 EGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK 449 (675)
Q Consensus 396 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 449 (675)
.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+.+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 6655555555555444 55555555555555555666665555554444444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-09 Score=95.73 Aligned_cols=421 Identities=13% Similarity=0.069 Sum_probs=259.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 044815 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR 238 (675)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 238 (675)
+..++...|++++|...+..+.+.. .++...+-.|.-++.-.|.+.+|..+-++.. .++-.-..|...-.+.|+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCc
Confidence 4457789999999999999887765 5666677777777788899999998866553 355566667777788888
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHH
Q 044815 239 VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVL-IDGLCKKGWTEKAFR 317 (675)
Q Consensus 239 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 317 (675)
-++-..+-+.+.+.- .|. ....--.|.+ -.+++|++++..+... .|+-...|.- .-+|.+..-++-+.+
T Consensus 137 Ek~~~~fh~~LqD~~--Edq--LSLAsvhYmR----~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL--EDQ--LSLASVHYMR----MHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred HHHHHHHHHHHhhhH--HHH--HhHHHHHHHH----HHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 777777666654421 111 1122223344 3689999999998876 3444555543 456788888998988
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Q 044815 318 LFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG-----NFERAYDLMDL 392 (675)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~ 392 (675)
++.-.++.. +.+...-|.......+.=+-..|.+-..++...+-.. -..+.-.|+.+ .-+.|++++--
T Consensus 207 vl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~ 279 (557)
T KOG3785|consen 207 VLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPS 279 (557)
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchH
Confidence 888777654 3445556655555555333333444444444432211 12333444432 34677777766
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHcC
Q 044815 393 MGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILL-----SEHLKQAETKQALGLFCRMVKAG 467 (675)
Q Consensus 393 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~A~~~~~~m~~~~ 467 (675)
+.+. -|.. --.|+-.|.+.+++.+|..+.+++.- ..|-......++ +-.......+-|...|+..-+.+
T Consensus 280 L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 280 LMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred HHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 6553 2333 34566778899999999999887521 122222222222 11222233555666666655544
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044815 468 LNPDI-HAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYG 546 (675)
Q Consensus 468 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 546 (675)
..-|. .--.++..++.-..++++...+++.+...-...|...| .+.++++..|++.+|.++|-++....++.+..-..
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 33332 12234445555557788888888877765333333333 46788899999999999998876544443444445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhH
Q 044815 547 ALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLDK-KLWIRTV 612 (675)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 612 (675)
.+.++|.+.++++-|..++-.+-. ..+..+. ..++..+.+++.+=-|.+.|+.++. .|++.-|
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 567788899999888776655432 2223333 3356677888888888888888776 3444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-08 Score=100.72 Aligned_cols=222 Identities=13% Similarity=0.056 Sum_probs=104.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRW 245 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (675)
.+++...++..+.+++ +.+....+.....-.+...|+-++|......-.... ..+.++|..+.-.+....++++|+..
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3455555555555544 223333444444444555666666666555544322 33555666666555556666666666
Q ss_pred HHHHhHCCCCCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 246 LSAMLDRGAILDN-ATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 246 ~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
|......+ ||. ..+.-+--.-.+. ++++.....-..+.+.. ......|..+..++.-.|+...|..+.+...+
T Consensus 98 y~nAl~~~--~dN~qilrDlslLQ~Qm---Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 98 YRNALKIE--KDNLQILRDLSLLQIQM---RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHhcC--CCcHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665543 222 2222222111221 34444443333333321 11334455555555556666666666665544
Q ss_pred cCCCCCCHHHHHHHHH------HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 044815 325 SDNYKPNVHTYTAMIS------GYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 325 ~~~~~~~~~~~~~li~------~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
.....|+...|..... ...+.|..++|.+.+..-... +.-....-..-...+.+.+++++|..++..+...
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 4333344444433222 223345555555555443321 1111111223344455666666666666666655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-10 Score=106.26 Aligned_cols=283 Identities=14% Similarity=0.102 Sum_probs=131.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 309 KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYD 388 (675)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 388 (675)
.|++.+|.+...+..+ .+ +-....|..-..+.-+.|+.+.+-.++.+.-+..-.++...+.+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae-~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAE-HG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhh-cC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4555555555544322 11 112233333444444555555555555555543223334444444444555555555555
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 044815 389 LMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI-------TYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 389 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
-.+.+.+.+ +-+........++|.+.|++.....++.++.+.+.-.|.. +|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 555555443 3344455555555555555555555555555555443332 34444443333333333333343
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 541 (675)
..... ...++..-..++.-+.++|+.++|.++..+..+.+..|+ . ...-.+.+-++...-++..++-.+. .+-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 33322 223344444455555555555555555555555443333 1 1111223344444444444443331 1122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
+..+.+|...|.+.+.+.+|...|+..++ ..|+..++..++.++.+.|+.++|.+..++
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555555555555555555554 344555555555555555555555555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-09 Score=108.38 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=46.3
Q ss_pred HHHHHHccC-CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 615 LIRKLCSEK-RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 615 l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
++..+.+.. =.++|.++++-+.+..++ +..||.....+|.+.|++-.|.+.+.++
T Consensus 462 ~GekL~~t~dPLe~A~kfl~pL~~~a~~-~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 462 LGEKLLKTEDPLEEAMKFLKPLLELAPD-NIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred cHHHHhcCCcHHHHHHHHHHHHHHhCcc-chhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 444455544 468899999999999998 9999999999999999999999988764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-08 Score=98.03 Aligned_cols=456 Identities=11% Similarity=0.111 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 044815 189 STLNRVVGIACELGLVEYAEEVFDEMCAR-GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITA 267 (675)
Q Consensus 189 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 267 (675)
..|...+..+.++|++..-...|+..... -+......|...+.-.-..+-++.+..+|++.++. ++..-+..|.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45777777788899999999999887653 23334567888888888888899999999999875 44446677777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCCH--HHHHHH
Q 044815 268 FCDKGFRGSIKQAFELLEEMVRK------GWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD-NYKPNV--HTYTAM 338 (675)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~~l 338 (675)
+++. +++++|.+.+...+.. ..+.+...|..+.+...+.-+.-..+.+ +.+++.+ +.-+|. ..|+.|
T Consensus 179 L~~~---d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 179 LAKS---DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHhc---cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHH
Confidence 7776 7899999988887643 1234556677776666665443333332 2222211 112443 468899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCC
Q 044815 339 ISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMG-KEGCTPNIYAYNAIIDGLCKKGR 417 (675)
Q Consensus 339 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~ 417 (675)
.+.|.+.|.+++|.++|++.... ...+.-|+.+.++|..-..-.-+..+ +... +.|-+-+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~d------------- 318 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDVD------------- 318 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhhh-------------
Confidence 99999999999999999998764 22444566666666543221111111 1011 1111111111
Q ss_pred HHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 044815 418 VQEAYELLKKAFQR-----------ELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD------IHAYTTLIA 480 (675)
Q Consensus 418 ~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~li~ 480 (675)
++-.+.-|+.+.+. .-+.++..|..-+. +..|+..+-...+.+.++. +.|. ...|..+..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 12222222222221 12334445544333 3456777777777777764 2332 345777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----------CCC-------
Q 044815 481 AFCRQKKMKESEKFFQEAITAGLFPT---KETYTSMICGYLRDGNISSAVKYFQRMNQIG----------CAP------- 540 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~p------- 540 (675)
.|-..|+++.|..+|++..+....-- ..+|..-...-.+..+++.|++++++....- ..|
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88888999999999988887643211 2345555555667788888888887765321 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---CC-ChhhHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK---KL-WIRTVNTLI 616 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~~~~~~l~ 616 (675)
+...|..+++.--..|-++....+|+++++..+. ++......+..+....-++++.+++++-.. .| -...|++.+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 1224555566666678888999999999986553 344445555566666778889999887433 22 244677766
Q ss_pred HHHHc---cCCHHHHHHHHHHHhcCCCCCCHH-H-HHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 617 RKLCS---EKRVGMAALFFHKLLGKDQNVDRV-S-LAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 617 ~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~-~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..+.+ ..+.+.|..+|+++++..| |... | |...+..--+-|-...|..+++++..+
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 65543 3378999999999999655 4433 2 233333344567778888888887553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-09 Score=102.69 Aligned_cols=443 Identities=14% Similarity=0.124 Sum_probs=224.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCC
Q 044815 195 VGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFR 274 (675)
Q Consensus 195 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 274 (675)
++.+...|++++|++...++...+ +-+...+..-+.++++.+++++|+.+.+.-... ..+...+ +=.+||... .
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yr-l 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYR-L 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHH-c
Confidence 344455666677777666666553 445566666666666777777766444432210 0011110 233444432 2
Q ss_pred CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKP-NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEM 353 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 353 (675)
+..++|+..++- ..+ +..+...-...+.+.|++++|+++|+.+.+...-.-+...-..++..-. +..
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~ 160 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQ 160 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhh
Confidence 566666666662 222 2234444456667777777777777776553321111111111111100 000
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------C------CCCCH-HHHHHHHHHHHhcCC
Q 044815 354 LLERMKEQGLLPN--TNTYTSLIYGHCKVGNFERAYDLMDLMGKE-------G------CTPNI-YAYNAIIDGLCKKGR 417 (675)
Q Consensus 354 ~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g------~~~~~-~~~~~li~~~~~~g~ 417 (675)
. +.+......|+ ...+......+...|++.+|+++++...+. + +.-.. ..-..+...+...|+
T Consensus 161 ~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 V-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred H-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0 01222222221 112222233445667777777777666211 0 00001 111234455667788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHH-HHHHHHHHHH-----------HcCCCCCHHHHHHHHHH
Q 044815 418 VQEAYELLKKAFQRELQADKITY----TILLSEHLKQAETK-QALGLFCRMV-----------KAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 418 ~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~-~A~~~~~~m~-----------~~~~~p~~~~~~~li~~ 481 (675)
.++|..++...++.+ .+|.... |.|+..-....-++ .++..++... ...-.-...--+.++..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777764 3343222 22221111111011 1111111111 11001011112233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH-HH-HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMIC-GY-LRDGNISSAVKYFQRMNQIGCAPD--NITYGALISGLCKQSK 557 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~-~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~ 557 (675)
|. +..+.+.++-..... ..|.. .+..++. ++ ++...+.+|.+++...-+. .|. ....-..+......|+
T Consensus 319 ~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred Hh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCC
Confidence 33 444455544433322 22333 3333333 33 2233577788888877663 344 3445556666788999
Q ss_pred HHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCChhh----HHHHHHHHH
Q 044815 558 LDEACQFYE--------SMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-----KLWIRT----VNTLIRKLC 620 (675)
Q Consensus 558 ~~~A~~~~~--------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~----~~~l~~~~~ 620 (675)
++.|++++. ...+.+..| .+...+...|.+.++.+.|..++.+..+ ...... +.-.+..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999999 555555555 3555667778888887777777776543 112222 333333344
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 621 SEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
+.|+-++|..+++++.+.+++ |..+...++.+|++.. .+.|..+-+
T Consensus 470 r~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 679999999999999998887 8899999988887764 355554433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-11 Score=110.65 Aligned_cols=239 Identities=13% Similarity=0.126 Sum_probs=161.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044815 397 GCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYT 476 (675)
Q Consensus 397 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 476 (675)
|+..|-..-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-+.|.+..++..|+.++.+-.+. ++-++....
T Consensus 218 ~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~ 294 (478)
T KOG1129|consen 218 GCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLL 294 (478)
T ss_pred cchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhh
Confidence 34445555567888888888888888888887765 556667777888888888888888888777765 233343344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS 556 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 556 (675)
.....+-..++.++|.++++...+... -+++....+..+|.-.++.+-|+.+++++.+.|+. +...|+.+.-+|.-.+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 556666777888888888887777542 35666666667777777888888888888877754 5666777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 557 KLDEACQFYESMIGKGISPCE--VTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 557 ~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
++|-++.-|++.+..--.|+. .+|+.++....-.|++..|.+-|+-.... .....+|.|+-.-.+.|++++|..++
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 888888777777654333332 45566666666666666666666654432 23445666666566666666666666
Q ss_pred HHHhcCCC
Q 044815 633 HKLLGKDQ 640 (675)
Q Consensus 633 ~~~~~~~~ 640 (675)
..+.+..|
T Consensus 453 ~~A~s~~P 460 (478)
T KOG1129|consen 453 NAAKSVMP 460 (478)
T ss_pred HHhhhhCc
Confidence 66655544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-09 Score=106.04 Aligned_cols=475 Identities=14% Similarity=0.097 Sum_probs=283.0
Q ss_pred CCChhHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 044815 146 NGNFERAHEVMQCMVSSFAEIGRLKEGFSMVI----EMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCA 221 (675)
Q Consensus 146 ~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 221 (675)
.++.++. .+...+-.+++-..+.+++....- ++....+..++..|..+.-++...|+++.+.+.|++....- --
T Consensus 278 ~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~ 355 (799)
T KOG4162|consen 278 KSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FG 355 (799)
T ss_pred CCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hh
Confidence 3444443 333333345666666666654433 33334455678888888888889999999999998876532 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--CC--CCChh
Q 044815 222 DASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK--GW--KPNVY 297 (675)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~ 297 (675)
....|+.+...|...|.-..|..++++-......|+..+--.++...|-.. .+.+++++.+-.+.++. +. .....
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~-l~~~eegldYA~kai~~~~~~~~~l~~~ 434 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIER-LKLVEEGLDYAQKAISLLGGQRSHLKPR 434 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 556788888888888888888888887765543454444444444444422 36777777777666652 11 11233
Q ss_pred hHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044815 298 THTVLIDGLCKK-----------GWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN 366 (675)
Q Consensus 298 ~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 366 (675)
.|-.+.-+|... -...++++.+++..+.++-.|++..|-.+- |...++++.|.+..++..+.+-.-+
T Consensus 435 ~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 435 GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 444444444321 123456666777766665555555444433 4456677777777777777655556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044815 367 TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSE 446 (675)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 446 (675)
...|..|.-.+...+++.+|+.+.+.....- ..|......-++.-..-++.++|......+..- ++ +.. .
T Consensus 513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~-------~ 582 (799)
T KOG4162|consen 513 AKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AEY-------G 582 (799)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hhh-------h
Confidence 7777777777777777777777777655431 112222222233333456666666665554421 00 000 0
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC------HhHHHHHHHH
Q 044815 447 HLKQAETKQALGLFCRMVKA--GLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF--PT------KETYTSMICG 516 (675)
Q Consensus 447 ~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~------~~~~~~li~~ 516 (675)
....++-....+....+.-. ...-.+.++..+.......+....-... +...-+. |+ ...|......
T Consensus 583 ~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~ 659 (799)
T KOG4162|consen 583 VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADL 659 (799)
T ss_pred HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHH
Confidence 00011111111111111100 1111223333333222211111000000 1111111 22 2345566777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 595 (675)
+.+.+..++|...+.+..... .-....|......+...|..++|.+.|...+. +.|++ ....+++.++.+.|+..-
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcch
Confidence 888999999998888887642 33456677777778889999999999999988 77876 455789999999998877
Q ss_pred HHH--HHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 596 AMI--ILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 596 A~~--~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
|.+ ++..+.+ +.+...|..++..+.+.|+.++|.+.|+.+++....
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 777 8888766 347889999999999999999999999999887654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-10 Score=109.56 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG 551 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 551 (675)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45666677777777888888888877776532 345667777777888888888888888777643 2345566777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHH
Q 044815 552 LCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMA 628 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 628 (675)
+...|++++|.+.++++++....+ ....+..++..+...|++++|.+.+++.... .+...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887642222 2345566778888888888888888886552 3456677888888899999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 629 ALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 629 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...++++++..+. +...+..++..+...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999998887554 677777888888899999999988887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-08 Score=97.72 Aligned_cols=432 Identities=13% Similarity=0.122 Sum_probs=271.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 044815 190 TLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFC 269 (675)
Q Consensus 190 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 269 (675)
.|...+.+| ..+++...+++.+.+.+. .+-...+.....-.++..|+-++|......-.+.++. +.+.|..+ ..+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~-gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVL-GLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHH-HHHH
Confidence 344555544 678888888888888873 3445566666666778889999999888887765433 33444443 3444
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH
Q 044815 270 DKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMN 349 (675)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 349 (675)
+. ..++++|++.|....+.+. .|...+..+.-.-.+.|+++.......+.++.. +.....|..+..++.-.|++.
T Consensus 86 R~--dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 86 RS--DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred hh--hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHH
Confidence 43 2789999999999887653 367788877777788888888888777776633 334566778888888889999
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 350 RAEMLLERMKEQG-LLPNTNTYTSLIYGH------CKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAY 422 (675)
Q Consensus 350 ~A~~~~~~m~~~g-~~p~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 422 (675)
.|..++++..+.. ..|+...|.-..... .+.|.+++|.+.+..-... +.-....-..-...+.+.+++++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999888754 346666665443322 3567777777776655443 1112233345667788899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 044815 423 ELLKKAFQRELQADKITYTILLSEHL-KQAETKQAL-GLFCRMVKAGLNPDIHAYTTLI-AAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~ 499 (675)
.++..++.. .||..-|......+. +-.+.-+++ .+|....+. .|....-..+- .......-.+...+++..+.
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 999998876 466666655444333 344444444 555555443 22222111111 11111233444556667777
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC------------CCCHHHH--HHHHHHHHhcCCHHHHHH
Q 044815 500 TAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI--GC------------APDNITY--GALISGLCKQSKLDEACQ 563 (675)
Q Consensus 500 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~------------~p~~~~~--~~l~~~~~~~g~~~~A~~ 563 (675)
+.|+++ ++..+...|-.-...+-..++.-.+... |. +|....| -.++..+-+.|+++.|..
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 777643 3344444443222222111222222110 11 3444433 446677888899999999
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhH-H-HHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 564 FYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDKKLWIRTV-N-TLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 564 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~-~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
+++.+++ -.|+.. .|..-+..+...|++++|..++++...-+.+..+ | --+.-..+.++.++|.++..+..+.|.
T Consensus 393 yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 393 YIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9998887 456543 3344567888899999999999988775443332 3 455556778899999988888877765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-07 Score=96.17 Aligned_cols=504 Identities=13% Similarity=0.149 Sum_probs=274.9
Q ss_pred hCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHH-----------------HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044815 125 GFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCM-----------------VSSFAEIGRLKEGFSMVIEMTNNGLPLI 187 (675)
Q Consensus 125 ~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~l-----------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~ 187 (675)
....|.|.- ...++....++|-+..|.+.|+.+ +..|...-.++++.+.+..|...+++.+
T Consensus 600 gN~mFtHyD--ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqN 677 (1666)
T KOG0985|consen 600 GNDMFTHYD--RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQN 677 (1666)
T ss_pred hcccccccc--HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 344566654 345667777888888888776643 3367777788999999999999988888
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhH-----
Q 044815 188 TSTLNRVVGIACELGLVEYAEEVFDEMCAR-----------GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLD----- 251 (675)
Q Consensus 188 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 251 (675)
..+.-.+..-|..+=-.+...++|+..... ++..|+...--.|.+.|+.|++.+..++.++---
T Consensus 678 lQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpEr 757 (1666)
T KOG0985|consen 678 LQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPER 757 (1666)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHH
Confidence 888888888888777777777888776532 3455666667788999999998888776654211
Q ss_pred -------CC---CCC-----CHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHH--------------
Q 044815 252 -------RG---AIL-----DNA-TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTV-------------- 301 (675)
Q Consensus 252 -------~g---~~~-----~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------- 301 (675)
.. -.| |.. ...-++.-+.+ .+..+-+++|-+-+.-+ ..+.+...
T Consensus 758 vKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyr----nn~~kyIE~yVQkvNps--~~p~VvG~LLD~dC~E~~ik~L 831 (1666)
T KOG0985|consen 758 VKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYR----NNLQKYIEIYVQKVNPS--RTPQVVGALLDVDCSEDFIKNL 831 (1666)
T ss_pred HHHHHHhccccccCceEEEecccccHHHHHHHHHH----hhHHHHHHHHHhhcCCc--ccchhhhhhhcCCCcHHHHHHH
Confidence 00 000 100 01111111222 12333333332211111 01111111
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH-HH---HHHHH------H
Q 044815 302 ------------LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRA-EM---LLERM------K 359 (675)
Q Consensus 302 ------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A-~~---~~~~m------~ 359 (675)
|..-.-+.++..--...++..+..+ ..|..++|+|...|...++-.+- ++ .|+.. .
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCE 909 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhc
Confidence 1111222333333333333333322 24566667666666655442221 10 01100 0
Q ss_pred Hc-----------CCCCCH---------HHHHHHHHHHHhcCCHH---HH--------HHHHHHHhhcCCC--CCHHHHH
Q 044815 360 EQ-----------GLLPNT---------NTYTSLIYGHCKVGNFE---RA--------YDLMDLMGKEGCT--PNIYAYN 406 (675)
Q Consensus 360 ~~-----------g~~p~~---------~~~~~li~~~~~~g~~~---~A--------~~~~~~m~~~g~~--~~~~~~~ 406 (675)
++ |.. |. ..|......+.+..+.+ +. ..+.+...+.+++ .|+....
T Consensus 910 KRDP~lA~vaYerGqc-D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS 988 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQC-DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVS 988 (1666)
T ss_pred ccCCceEEEeecccCC-cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHH
Confidence 00 000 11 11112222222222221 11 1233333333322 2344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQREL--QADKITYTILLSEHLKQAETKQALGLFCRMVKAGL---------------- 468 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---------------- 468 (675)
.-+.++...+-..+-+++++++.-.+. .-+...-|.|+-...+ -+.....++.+++-..+.
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEA 1067 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHH
Confidence 566777777777777777777653211 1111112222221111 122222222222222110
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044815 469 -------NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541 (675)
Q Consensus 469 -------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 541 (675)
..+....+.|+.- -+.++.|.++-++. -....|..+..+-.+.|.+.+|++-|-+. .|
T Consensus 1068 F~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dD 1132 (1666)
T KOG0985|consen 1068 FAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DD 1132 (1666)
T ss_pred HHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CC
Confidence 1122222222221 13333333333222 34667888888888889988888877543 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCS 621 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (675)
+..|..+++...+.|.+++-.+++..+.++.-.|... ..|+.+|++.+++.+-.++ ...|+......+++-|..
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f----i~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF----IAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH----hcCCCchhHHHHhHHHhh
Confidence 6788999999999999999999888888776666543 4678899999988775444 345666677788888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
.|.++.|.-+|. +...|..|+..+...|+++.|.+...|+
T Consensus 1207 ~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888887775 4456777788888888888887776665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-07 Score=87.40 Aligned_cols=302 Identities=14% Similarity=0.050 Sum_probs=188.8
Q ss_pred CChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HH
Q 044815 294 PNVYTHTVLIDGL--CKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTN-TY 370 (675)
Q Consensus 294 ~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~ 370 (675)
|+..+....+.++ +-.++...|...+.-+.....++-|+.....+...+...|+.++|+..|++.... .|+.. ..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 3333333334433 3345555555555444444445666777778888888888888888888877653 33321 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQ 450 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 450 (675)
....-.+.+.|+++....+...+.... .-+...|-.-...+...++++.|+.+-++.++.+ +.+...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 111222346677777777766665432 1223333333344455677888888877777643 33445555556677778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHH-cCCHHHHHH
Q 044815 451 AETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI-CGYLR-DGNISSAVK 528 (675)
Q Consensus 451 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~ 528 (675)
+++++|.-.|+...... +.+...|..|+++|...|++.+|.-.-+...+. +.-+..+.+.+. ..+.. -.--++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 88888888887776642 456778888888888888888877776665543 223444544442 22222 122367788
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 529 YFQRMNQIGCAPDN-ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 529 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
++++... +.|+- ...+.+...+...|..++++.++++.+. ..||....+.|+..+...+.+++|...|.....
T Consensus 426 f~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 426 FAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8777665 45663 3556667777788888888888888877 567777788888888888888888887776543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-10 Score=112.69 Aligned_cols=195 Identities=18% Similarity=0.231 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CCH-
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITA-----G-LFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQI-----GCA-PDN- 542 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~~- 542 (675)
.+...|...+++++|..+|+++... | ..|. ..+++.|...|.+.|++++|..++++..+. |.. |..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4556666667777777777666542 1 1111 235566666677777777776666654431 211 222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhC---------
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGK---GISPCE----VTRVTLAYEYCKQGDSATAMIILESLDKK--------- 606 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------- 606 (675)
..++.++..|+..+++++|..+++...+. -+.++. .++..|+..|.+.|++++|.++++++...
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 24566677788888888888888876642 122222 45667888888888888888888886542
Q ss_pred -CChhhHHHHHHHHHccCCHHHHHHHHHHHhcC----CCC-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 607 -LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGK----DQN-VD-RVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 607 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.....++.++..|.+.+++++|.++|.+.... ||. |+ ..+|.+|+.+|...|++++|.++.++++
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11334677888888888888888888876543 332 22 3478889999999999999999988876
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-09 Score=117.11 Aligned_cols=231 Identities=12% Similarity=0.053 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhC
Q 044815 366 NTNTYTSLIYGHCK-----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKK---------GRVQEAYELLKKAFQR 431 (675)
Q Consensus 366 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~ 431 (675)
+...|...+.+-.. .+++++|...|++..+.. +.+...|..+..++... +++++|...++++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555544321 123567777777776653 22344555555544322 2356666666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044815 432 ELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYT 511 (675)
Q Consensus 432 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 511 (675)
+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...++++.+.... +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 3 3345556666666666666777777766666653 334555666666666667777777777666665422 122222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCK 589 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~ 589 (675)
.++..+...|++++|+..++++.+.. .| +...+..+..++...|++++|...++++.. ..|+.... ..+...|..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhc
Confidence 33334555666666666666665432 23 233455555666666666666666666544 23333222 334445555
Q ss_pred cCCHHHHHHHHHHHhh
Q 044815 590 QGDSATAMIILESLDK 605 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~ 605 (675)
.| ++|...++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 488 NS--ERALPTIREFLE 501 (553)
T ss_pred cH--HHHHHHHHHHHH
Confidence 55 355555555433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-08 Score=99.68 Aligned_cols=292 Identities=17% Similarity=0.146 Sum_probs=195.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMG---- 237 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 237 (675)
.+...|++++|++.++.-... +.............+.+.|+.++|..++..+++++ +.|..-|..+..++.-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 456778888888888775444 44556677888889999999999999999999986 345555555555553332
Q ss_pred -CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 044815 238 -RVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIK-QAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKA 315 (675)
Q Consensus 238 -~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 315 (675)
..+...++|+++...- |.......+.-.+.. | ..+. .+...+..+..+|++ .+++.|-..|....+.+-.
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g--~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-G--DEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-H--HHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 4677788888887653 333333333222222 1 2343 344566667777765 3455666666655555555
Q ss_pred HHHHHHHHhcC-------------CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 044815 316 FRLFLKLVRSD-------------NYKPNVH--TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCK 379 (675)
Q Consensus 316 ~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 379 (675)
.+++....... .-+|... ++..+...|...|++++|+.++++.++. .|+ +..|..-...+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 55555543221 1134443 4456677788899999999999988885 344 6778888888889
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcC
Q 044815 380 VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI------TY--TILLSEHLKQA 451 (675)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~~ 451 (675)
.|++++|.+.++...+.. .-|-..-+..+..+.+.|++++|.+++....+.+..|-.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988775 3355555667788889999999999988887665422211 12 33466788888
Q ss_pred CHHHHHHHHHHHHHc
Q 044815 452 ETKQALGLFCRMVKA 466 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~ 466 (675)
++..|++.|..+.+.
T Consensus 320 ~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 320 DYGLALKRFHAVLKH 334 (517)
T ss_pred hHHHHHHHHHHHHHH
Confidence 888888877666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-09 Score=115.26 Aligned_cols=218 Identities=11% Similarity=0.001 Sum_probs=118.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 346 EKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELL 425 (675)
Q Consensus 346 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 425 (675)
+++++|...+++..+.+.. +...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456666666666654222 45556666666666677777777777666654 334556666666666777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044815 426 KKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP 505 (675)
Q Consensus 426 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (675)
+++.+.++. +...+..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...+.++..... .
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~ 473 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-T 473 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-h
Confidence 776665432 22222233334555666777777776665543222344455666666677777777777766554321 1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQI-GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
+....+.+...|+..| ++|...++.+.+. ...+....+ +...+.-.|+.+.+... +++.+.|
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2333444455555555 3566655555432 112222222 22234445555555544 6665543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-08 Score=102.39 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 044815 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAI 408 (675)
Q Consensus 329 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 408 (675)
.|+..+|..++++-...|+.+.|..++.+|.+.|++.+..-|-.|+-+ .++..-++.+++.|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 477777777777777777777777777777777777777666666544 66677777777777777777777777655
Q ss_pred HHHHHh
Q 044815 409 IDGLCK 414 (675)
Q Consensus 409 i~~~~~ 414 (675)
+..+..
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 544444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-10 Score=108.47 Aligned_cols=233 Identities=12% Similarity=-0.016 Sum_probs=168.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044815 411 GLCKKGRVQEAYELLKKAFQREL-QA--DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK 487 (675)
Q Consensus 411 ~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 487 (675)
.....+..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 34455778889999988886432 12 23568888889999999999999999999875 4468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
+++|...|++..+... -+...|..+...+...|++++|++.+++..+. .|+..........+...+++++|...+++
T Consensus 114 ~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999998653 24677888889999999999999999999884 46543222222234457789999999977
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 568 MIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK---------KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 568 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
.... ..|+... ....+...|+.+++ +.++.+.+ +.....|..++..+.+.|++++|+..|+++++.
T Consensus 191 ~~~~-~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK-LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh-CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6643 2333222 22334445666544 34444332 123457889999999999999999999999999
Q ss_pred CCCCCHHHHH-HHHHH
Q 044815 639 DQNVDRVSLA-ALKNA 653 (675)
Q Consensus 639 ~~~p~~~~~~-~l~~~ 653 (675)
+|. |.+-+. .++..
T Consensus 266 ~~~-~~~e~~~~~~e~ 280 (296)
T PRK11189 266 NVY-NFVEHRYALLEL 280 (296)
T ss_pred CCc-hHHHHHHHHHHH
Confidence 875 544443 34443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-09 Score=101.43 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 044815 334 TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLC 413 (675)
Q Consensus 334 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 413 (675)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444444321 1123334444444444444444444444444332 223333444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 044815 414 KKGRVQEAYELLKKAF 429 (675)
Q Consensus 414 ~~g~~~~A~~~~~~~~ 429 (675)
..|++++|.+.+++..
T Consensus 111 ~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAI 126 (234)
T ss_pred HcccHHHHHHHHHHHH
Confidence 4444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-09 Score=108.32 Aligned_cols=241 Identities=18% Similarity=0.116 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKE-----GC-TPNIY-AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITY 440 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 440 (675)
.+...+...|...|++++|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 44555666777777777777776665543 10 11111 1223445555555555555555554421
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-hHHHHH
Q 044815 441 TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA-----GL-FPTK-ETYTSM 513 (675)
Q Consensus 441 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l 513 (675)
++.......+--..+++.|..+|++.|++++|..+++++.+. +. .|.+ ..++.+
T Consensus 271 -------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 271 -------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred -------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 000000011111234445555555555555555555544321 11 1111 124445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCC-HHH
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQI---GCAPD----NITYGALISGLCKQSKLDEACQFYESMIGK----GI--SPC-EVT 579 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~--~p~-~~~ 579 (675)
+..++..+++++|..++++..+. -..++ ..+++.+...|.+.|++++|.+++++++.. +- .+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 55566666666666666654321 01122 236777777777777777777777776642 11 111 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh------C---CChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK------K---LWIRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
++.++..|.+.+++++|.++|.+... + ....+|..|+..|...|++++|.++.+++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45677777777777777777766322 1 123457778888888888888888777665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-07 Score=94.02 Aligned_cols=387 Identities=19% Similarity=0.157 Sum_probs=217.1
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHH
Q 044815 201 LGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQA 280 (675)
Q Consensus 201 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a 280 (675)
..++.+|+.+|-+-- + -...|..|....+|++|+.+-+.. |...-...-...+.++... |+-+.|
T Consensus 544 ~kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt---~qd~ka 608 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDT---GQDEKA 608 (1636)
T ss_pred HhhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhc---Cchhhh
Confidence 345777777764321 1 123456677777788887765432 2211111222333333333 333333
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044815 281 FELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 360 (675)
-++ .. .+-.+ ...|..|.+.|.+-+|......- .....|......+..++.+..-+++|-++|+++..
T Consensus 609 ~el----k~----sdgd~-laaiqlyika~~p~~a~~~a~n~---~~l~~de~il~~ia~alik~elydkagdlfeki~d 676 (1636)
T KOG3616|consen 609 AEL----KE----SDGDG-LAAIQLYIKAGKPAKAARAALND---EELLADEEILEHIAAALIKGELYDKAGDLFEKIHD 676 (1636)
T ss_pred hhh----cc----ccCcc-HHHHHHHHHcCCchHHHHhhcCH---HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC
Confidence 221 11 12222 34678899999988887654221 12345666777777777777778888888887764
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044815 361 QGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAY-NAIIDGLCKKGRVQEAYELLKKAFQRELQADKIT 439 (675)
Q Consensus 361 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 439 (675)
| ...+.+|-+..-+.+|.++-+-.- +..+++. .....-+...|+++.|...|-+...
T Consensus 677 ----~-----dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~--------- 734 (1636)
T KOG3616|consen 677 ----F-----DKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------- 734 (1636)
T ss_pred ----H-----HHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence 1 223444444444666666544321 2222221 2334455566777777766654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 044815 440 YTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR 519 (675)
Q Consensus 440 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 519 (675)
....+.+......+.+|+.+++.+..+. ....-|..+..-|...|+++.|.++|.+. ..++-.|..|.+
T Consensus 735 ~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhc
Confidence 1223455566777888888887776653 22334666677778888888888877543 234556777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044815 520 DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMII 599 (675)
Q Consensus 520 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 599 (675)
.|++++|.++-.+.. |.......|..-..-+-++|++.+|.++|-..-+ |+. .+.+|-+.|..++.+++
T Consensus 804 ~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHH
Confidence 888888887766653 2223344555555556777777777776654422 432 24566677777776666
Q ss_pred HHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 044815 600 LESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLS 667 (675)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 667 (675)
.++--...-..+...+..-|-..|+..+|...|-++ .-|.+.++.|..++-|++|-++.
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 665433223344555666666667776666665443 12334444555556666555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-07 Score=90.30 Aligned_cols=445 Identities=16% Similarity=0.103 Sum_probs=251.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044815 161 SSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVT 240 (675)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 240 (675)
.-+...|++++|.+...+++..+ +.+...+..=+-++.+.+++++|+++.+.-... ..+..-+---..+..+.++.+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 34567778888888888888776 677778888888889999999999765543321 111111111223445788999
Q ss_pred HHHHHHHHHhHCCCCCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHH
Q 044815 241 EADRWLSAMLDRGAILD-NATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDG-LCKKGWTEKAFRL 318 (675)
Q Consensus 241 ~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 318 (675)
+|+..++ |..++ ..+...-...+.+. +++++|+++|+.+.+.+.+ + +...+.+ +...+- +..+
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl---~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a---~l~~ 161 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRL---ERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA---ALQV 161 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHH---hhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH---hhhH
Confidence 9998888 33333 23444444555665 7899999999999887533 2 2222211 111111 1111
Q ss_pred HHHHHhcCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHhcC
Q 044815 319 FLKLVRSDNYKPNVHTYTAM---ISGYCKEEKMNRAEMLLERMKEQG-------LLPNTN-------TYTSLIYGHCKVG 381 (675)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~g-------~~p~~~-------~~~~li~~~~~~g 381 (675)
+ .++.....| ..+|..+ ...+...|++.+|+++++.....+ -.-+.. +-.-+...+-..|
T Consensus 162 -~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 -Q-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred -H-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 122222223 2344443 344556899999999998883221 111111 1123445567889
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHHHHHHhCCC----------CCCHHHH-HHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYA----YNAIIDGLCKKGRVQ-EAYELLKKAFQREL----------QADKITY-TILLS 445 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~~~~~~~----------~~~~~~~-~~li~ 445 (675)
+.++|..++...++.. ++|... -|.|+..-....-++ .++..++....... ....... +.++.
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 344432 233332211111111 12222222211100 0000111 11222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF--CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNI 523 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 523 (675)
.| .+.-+.+.++....- +..|. ..+..++..+ ++......|.+++....+....-...+.-.++......|++
T Consensus 318 l~--tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 318 LF--TNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HH--hhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 22 222233333222221 11222 3344444433 23335778888888877765444456677778888999999
Q ss_pred HHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHH
Q 044815 524 SSAVKYFQ--------RMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK--GISPCE----VTRVTLAYEYCK 589 (675)
Q Consensus 524 ~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~----~~~~~l~~~~~~ 589 (675)
+.|++++. .+.+.+..|. +...+...+.+.++-+-|..++.+.+.- .-.+.. .++..++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999999 5555554554 4455566677777777788888777641 011111 223334444556
Q ss_pred cCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 590 QGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
.|+.++|...++++.+ +++..+...++.+|+.. +.+.|..+-+++
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7999999999999877 46777888888888876 677777665543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=95.50 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALIS 550 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~ 550 (675)
..+...|.-.|.+.|+...|.+-+++.++... .+..+|..+...|.+.|..+.|.+.|++.... .| +....|....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhH
Confidence 34567778889999999999999999998753 35678888889999999999999999998874 45 4567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
-+|..|++++|...|++.+..-.-|. ..++..++.+-.+.|+.+.|...|++... +........+.....+.|++..
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 88999999999999999987522221 35777888888899999999999998665 2345667788888999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 628 AALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 628 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
|..++++....+. ++...+-..+.+-...|+.+-|.++=..+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999888877 58888888888888899988777664443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=100.07 Aligned_cols=228 Identities=13% Similarity=0.113 Sum_probs=176.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHh
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITY-TILLSEHLK 449 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~ 449 (675)
+-+..+|.+.|.+.+|.+.++...+. .|-+.||-.|.+.|.+..+.+.|+.++.+-.+. .|-.+|| .-+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56778888888888888888877766 567778888888888888888888888887764 3444444 456677788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 044815 450 QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKY 529 (675)
Q Consensus 450 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 529 (675)
.++.++|.++++...+.. +.++.....+...|.-.++++.|..+++++.+.|+ -+...|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888888888888764 44566666677777778889999999999998887 4788888888888888889988888
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 530 FQRMNQIGCAPD--NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 530 ~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
|++....--.|+ ...|-.+.......|++.-|.+.|+-.+..+-. ....++.|+-.-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888776443454 346777777778889999999998888774322 246778888888889999999988887654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-11 Score=82.55 Aligned_cols=49 Identities=47% Similarity=0.891 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC 378 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 378 (675)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-08 Score=99.47 Aligned_cols=218 Identities=11% Similarity=-0.049 Sum_probs=150.3
Q ss_pred hcCCHHHHHHHHHHHhhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 379 KVGNFERAYDLMDLMGKEG-CTPN--IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
..+..+.++.-+.++.... ..|+ ...|..+...|.+.|+.++|...|++.++.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3466777888888877532 1222 4567778888889999999999999988864 3567888899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
|...|++..+.. +-+..++..+..++...|++++|.+.|+...+.. |+..............++.++|...+++...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999988764 3356778888888888999999999999988864 4332222222233456788999999976554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 536 IGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK---G--ISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
. ..|+...+ .......|+..++ +.++.+.+. . +.| ....|..++..|.+.|++++|...|++...
T Consensus 194 ~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 194 K-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred h-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 23332222 2223345555544 344544421 1 112 125678889999999999999999998765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-06 Score=88.10 Aligned_cols=310 Identities=15% Similarity=0.205 Sum_probs=170.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN-YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+.....-+.++...+-..+-++++++++-... +.-+...-|.|+-...+. +...+.++.+++...+. |+ +.
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia 1055 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IA 1055 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HH
Confidence 33344445555555555565665555543221 111122223333222222 23334444444433211 11 12
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 454 (675)
......+-+++|..+|++.. .+....+.|+.- -+..+.|.+.-++. ..+..|+.+..+-.+.|.+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchH
Confidence 23334455666666666543 234444444432 34555555554442 34567888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
+|++-|-+. .|+..|..++....+.|.+++-.+++..+.+..-.|.+. +.||-+|++.++..+..+++
T Consensus 1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh----
Confidence 887665332 266778888888888888888888887666655444433 46777888888776655443
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhh---
Q 044815 535 QIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRT--- 611 (675)
Q Consensus 535 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 611 (675)
.-||......+.+-|...|.++.|.-+|.... .+..|+..+...|+++.|...-++.. +..+
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~ 1254 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN---STKTWKE 1254 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHH
Confidence 23777777777777888888877777666542 33445555566666665554443332 2222
Q ss_pred ---------------------------HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 612 ---------------------------VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 612 ---------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..-++..|-..|-++|-+.+++..+...-. ....|.-|+-.|.
T Consensus 1255 VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA-HMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA-HMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH-HHHHHHHHHHHHH
Confidence 344566666666666666666665443322 3344444544443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.7e-07 Score=94.16 Aligned_cols=545 Identities=14% Similarity=0.054 Sum_probs=292.9
Q ss_pred hhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHH--------------HHHHHHhcCChHHHHHHHHH
Q 044815 113 SMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQC--------------MVSSFAEIGRLKEGFSMVIE 178 (675)
Q Consensus 113 ~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~--------------li~~~~~~g~~~~A~~~~~~ 178 (675)
...|+..|-.+.+. -......|..+|..+...-+...|..-|+. ..+.|++...++.|..+.-.
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44556655544433 233455677777777665555556555553 46688888999998888444
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCC
Q 044815 179 MTNNGLPLI--TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAIL 256 (675)
Q Consensus 179 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 256 (675)
.-+.. +-. ...|..+.-.|.+.++...|+.-|+...+.. +.|...|..+..+|...|++..|.++|.+..... |
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 33322 111 1233334445677888888998888887653 4578889999999999999999999998887653 3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 044815 257 DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKG------WKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS----- 325 (675)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 325 (675)
+ .+|.....+-... +.|.+.++...+..+.... ...-..++-.+...+.-.|-..+|...+++.++.
T Consensus 628 ~-s~y~~fk~A~~ec-d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMEC-DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred H-hHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3 2333332222221 1378999998888776431 1112233333334444444444444444433221
Q ss_pred -CCCCCCHHHHHHHHHHHH---hcC--ChH-HHHHHH-HHHHHcCCCC--------------------CHHHHHHHHHHH
Q 044815 326 -DNYKPNVHTYTAMISGYC---KEE--KMN-RAEMLL-ERMKEQGLLP--------------------NTNTYTSLIYGH 377 (675)
Q Consensus 326 -~~~~~~~~~~~~li~~~~---~~~--~~~-~A~~~~-~~m~~~g~~p--------------------~~~~~~~li~~~ 377 (675)
.....+...|-.+..++. ... .+. ....+| .+....+..| +..+|..|+..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 001122222222222211 100 000 000111 1111111111 122333333333
Q ss_pred Hh--------cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044815 378 CK--------VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK 449 (675)
Q Consensus 378 ~~--------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 449 (675)
.+ ..+...|...+.+.++.. ..+..+|+.|.-. ...|.+.-|.-.|-+.... .+....+|..+.-.+.+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEe
Confidence 32 112235666666665542 3345555555444 5556666666666554433 23455667777777778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HH--CCCCCCHhHHHHHHHHHHHcCCHHH
Q 044815 450 QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA--IT--AGLFPTKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 450 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~--~~~~~~~~~~~~li~~~~~~g~~~~ 525 (675)
..+++.|...|....... +.+...|..........|+.-++..+|..- .. .|-.+...-|-........+|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 888888888888777653 334555544444445667777777777652 21 2233444444444444455666544
Q ss_pred HHHHH----------HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--CCCCHHHHHHHHHHHHHc
Q 044815 526 AVKYF----------QRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIG---KG--ISPCEVTRVTLAYEYCKQ 590 (675)
Q Consensus 526 A~~~~----------~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g--~~p~~~~~~~l~~~~~~~ 590 (675)
-+... ++... +.+.+...|...+...-+.+.+..|.+...+++. .. ...+.+.-..++..++..
T Consensus 942 ~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lsl 1020 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSL 1020 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 33322 22222 2233456777777777777778877777776552 11 111122223456667777
Q ss_pred CCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCC-CCCC-HHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 591 GDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKD-QNVD-RVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 591 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
|.++.|...+......-+..+..+-+ ++.-.|+++++.+.|++++..- .+-| .+....++...+..+..+.|...+=
T Consensus 1021 gefe~A~~a~~~~~~evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLf 1099 (1238)
T KOG1127|consen 1021 GEFESAKKASWKEWMEVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLF 1099 (1238)
T ss_pred cchhhHhhhhcccchhHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHH
Confidence 88777666555433222221211111 1244678888888888887652 2223 2455667777778888888877765
Q ss_pred HHH
Q 044815 669 RIA 671 (675)
Q Consensus 669 ~~~ 671 (675)
++.
T Consensus 1100 e~~ 1102 (1238)
T KOG1127|consen 1100 EVK 1102 (1238)
T ss_pred HHH
Confidence 554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-11 Score=80.84 Aligned_cols=50 Identities=30% Similarity=0.640 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 044815 221 ADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCD 270 (675)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 270 (675)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-07 Score=92.79 Aligned_cols=378 Identities=17% Similarity=0.111 Sum_probs=210.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPN-VHTYTAMISGYCKEEKMNRAEM 353 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~ 353 (675)
|+++.|+..|-+.+..... |.+.|..-..+|.+.|++++|++--.+..+ ..|+ ...|+-...++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 8999999999999887544 888999999999999999999876555544 4466 4578999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHhhc---CCCCCHHHHHHHHHHHH----------hcCC
Q 044815 354 LLERMKEQGLLPNTNTYTSLIYGHCKVGNFERA---YDLMDLMGKE---GCTPNIYAYNAIIDGLC----------KKGR 417 (675)
Q Consensus 354 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~---g~~~~~~~~~~li~~~~----------~~g~ 417 (675)
-|.+-++.. +.|...++.+..++......... -.++...... ........|..++..+- ...+
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999988853 23677788888777211100000 0011111100 00001112222222221 1111
Q ss_pred HHHHHHHHHHH-----HhC-------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 418 VQEAYELLKKA-----FQR-------ELQA------------D----------KITYTILLSEHLKQAETKQALGLFCRM 463 (675)
Q Consensus 418 ~~~A~~~~~~~-----~~~-------~~~~------------~----------~~~~~~li~~~~~~~~~~~A~~~~~~m 463 (675)
+..|...+... ... +..| | ..-...+.++..+..+++.|++-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222211110 000 0111 0 012445666777777888888888877
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH-------HHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 464 VKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS-------MICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
.+.. .++.-++....+|...|.+.+....-...++.|.. ...-|+. +..+|.+.++++.|+.+|++....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 7764 45556677777788888877777777666665431 2222222 334566667788888888876654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHH
Q 044815 537 GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVN 613 (675)
Q Consensus 537 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 613 (675)
-..|+.. .+....+++....+...- +.|.. .-...-+..+.+.|++..|.+.|.++.+ +.+...|.
T Consensus 328 ~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs 396 (539)
T KOG0548|consen 328 HRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS 396 (539)
T ss_pred hcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence 3333322 122222333333333222 22222 1112224455555666666665555443 23445555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...-+|.+.|.+.+|+.-.+..++.+|+ ....|..=+.++....+|++|.+.+++.++
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555666666666655555555554 445555555555555566666655555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-07 Score=90.43 Aligned_cols=402 Identities=16% Similarity=0.133 Sum_probs=264.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHh
Q 044815 230 VVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN-VYTHTVLIDGLCK 308 (675)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 308 (675)
..+.+..|+++.|..+|-+.+..... |.+.|..-..++.+. |++++|++--.+-++. .|+ ...|+....++.-
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~---~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASL---GSYEKALKDATKTRRL--NPDWAKGYSRKGAALFG 82 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHH---hhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHh
Confidence 34677899999999999999887544 888999999999997 7899998877776665 444 4679999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHhc--
Q 044815 309 KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAE---MLLERMKEQ---GLLPNTNTYTSLIYGHCKV-- 380 (675)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~---~~~~~m~~~---g~~p~~~~~~~li~~~~~~-- 380 (675)
.|++++|+.-|.+-++.. +.+...++.+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 83 lg~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cccHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999999988754 345666777777762110000000 011111100 0000112233333322111
Q ss_pred --------CCHHHHHHHHHHH-----hhcC-------CCC----------------------CHHHHHHHHHHHHhcCCH
Q 044815 381 --------GNFERAYDLMDLM-----GKEG-------CTP----------------------NIYAYNAIIDGLCKKGRV 418 (675)
Q Consensus 381 --------g~~~~A~~~~~~m-----~~~g-------~~~----------------------~~~~~~~li~~~~~~g~~ 418 (675)
..+..|.-.+... ...| ..| -..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111121111110 0000 011 011235677778888899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHH
Q 044815 419 QEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTT-------LIAAFCRQKKMKES 491 (675)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~A 491 (675)
+.|.+-+...++.. -+..-++....++...|.+.++...-...++.|.. ...-|+. +..++.+.++++.|
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 99999999988754 55556677778899999998888888777776532 2222333 44466677889999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 492 EKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
..+|.+.......|+. ..+....+++.+..+...- +.|... -...-...+.+.|++..|+..|.+++.
T Consensus 318 i~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 9999997765433322 2344455666666665544 234432 223336678899999999999999998
Q ss_pred CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 571 KGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 571 ~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
.. |+ ...|...+.+|.+.|.+..|++-.+...+ ++++..|.--+.++....+++.|.+.|++.++.+|. +....
T Consensus 387 r~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~e~~ 463 (539)
T KOG0548|consen 387 RD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NAEAI 463 (539)
T ss_pred cC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHH
Confidence 54 54 56677789999999999999988777554 345666777777777888999999999999999987 77666
Q ss_pred HHHHHHHHh
Q 044815 648 AALKNACYE 656 (675)
Q Consensus 648 ~~l~~~~~~ 656 (675)
..+..+...
T Consensus 464 ~~~~rc~~a 472 (539)
T KOG0548|consen 464 DGYRRCVEA 472 (539)
T ss_pred HHHHHHHHH
Confidence 666666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-08 Score=86.07 Aligned_cols=200 Identities=15% Similarity=0.046 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044815 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGY 517 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 517 (675)
.+...|.-.|...|+...|..-+++.++.+ +.+..++..+...|-+.|..+.|.+.|++++.... -+..+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 356677788999999999999999999985 44677889999999999999999999999998754 4677889999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 044815 518 LRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 595 (675)
|..|++++|...|++....-.-+ -..+|..+.-+..+.|+++.|...|++.++. .|+ ..+...+.....+.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988742212 2458888888888999999999999999984 443 3566778889999999999
Q ss_pred HHHHHHHHhhCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 596 AMIILESLDKKL--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 596 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
|..+++...... ...+.-.-|+.-...|+.+.|-++=.++...-|.
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999987753 3444555566666789999888877777666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-06 Score=86.29 Aligned_cols=210 Identities=19% Similarity=0.127 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 044815 153 HEVMQCMVSSFAEIGRLKEGFSMVIEMTNN-G-------LPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADAS 224 (675)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 224 (675)
..+|+.|.+-+.+..+.+-|.-.+..|... | ...+...-..+.-.....|..++|+.+|.+...
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 346777777777777777776665555321 0 111112222233344578889999999888764
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----------HHcCC--
Q 044815 225 SYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEM----------VRKGW-- 292 (675)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~----------~~~~~-- 292 (675)
|..|=..|-..|.+++|.++-+.--+- . =..||.....-+-.. ++++.|++.|++. ....+
T Consensus 829 -~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear---~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 829 -YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEAR---RDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred -HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhh---ccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 344556777789999998887653322 2 123444444333333 6788888777752 22111
Q ss_pred -------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044815 293 -------KPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP 365 (675)
Q Consensus 293 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 365 (675)
..|...|.-....+-..|+++.|+.+|.... .|..++...|-.|+.++|-++-++-.
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~qGk~~kAa~iA~esg------ 965 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQGKTDKAARIAEESG------ 965 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEeeccCchHHHHHHHhcc------
Confidence 1234445555555666788888887776542 24555555666666666666554421
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 366 NTNTYTSLIYGHCKVGNFERAYDLMDLM 393 (675)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (675)
|......|...|...|++.+|..+|-+.
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344444555666666666666655443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-07 Score=83.26 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=145.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHc
Q 044815 158 CMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLM-VVAYCRM 236 (675)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~ 236 (675)
..+..+.+..++++|++++....+.. +.+....+.|.-+|....++..|...++++... .|...-|... ...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34445667778888888888877765 447788899999999999999999999999875 4666666543 4688899
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 044815 237 GRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAF 316 (675)
Q Consensus 237 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 316 (675)
+.+.+|+.+...|.+. ++...-..-+.+..+-. .+++..+..+.++....| +..+.+...-...+.|+++.|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYs-e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYS-EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcc-cccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 9999999999988763 22222222233333322 267888888888766432 5556666666778999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044815 317 RLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLL 364 (675)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 364 (675)
+-|+...+-+|+.|- ..||..+. ..+.|+++.|++...+++++|+.
T Consensus 165 qkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 999999998988774 46776554 45679999999999999998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.9e-07 Score=82.51 Aligned_cols=323 Identities=15% Similarity=0.102 Sum_probs=207.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HH
Q 044815 294 PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTY-TS 372 (675)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ 372 (675)
.++.-...+...+...|++.+|+.-|...++.+ +.+-.++.--...|...|+..-|+.-+.+.++ .+||-..- .-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH
Confidence 345556667778888888888888887776522 22333444445667778888888888887776 46664321 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044815 373 LIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452 (675)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 452 (675)
-...+.+.|.+++|..-|+...+.. |+..+ ...++.+.-..++-..+.+ .+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l~~----------------ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVLVQ----------------QLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHHHH----------------HHHHHhcCCc
Confidence 2334567788888888888877763 33221 2223333222222222222 2344566789
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
...|+.....+++.. +.|...|..-..+|...|++..|+.-++...+..- .+....-.+-..+...|+.+.++..+++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999998864 56778888888999999999999888877776532 4566666677778888999999999888
Q ss_pred HHHCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHH
Q 044815 533 MNQIGCAPDNIT----YGAL---------ISGLCKQSKLDEACQFYESMIGKGISPCEV---TRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 533 m~~~~~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A 596 (675)
..+ +.||... |-.+ +......++|-++.+-.+..++........ .+..+..+|...|++.+|
T Consensus 249 CLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 887 4677653 2111 112345566777777777777643221112 223344556667777777
Q ss_pred HHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 597 MIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 597 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
++...++.. +.+..++.--..+|.-...+|.|+.-|+++.+.++. |...
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s-n~~~ 377 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES-NTRA 377 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc-cHHH
Confidence 777777655 234666666777777777788888888887777766 4433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-06 Score=80.47 Aligned_cols=308 Identities=13% Similarity=0.125 Sum_probs=217.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHH
Q 044815 262 TLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTY-TAMIS 340 (675)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~li~ 340 (675)
--+-..+... |++..|+.-|...++.+.. +-.++-.-...|...|+..-|+.-+.+.++ .+||-..- -.-..
T Consensus 42 lElGk~lla~---~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 42 LELGKELLAR---GQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHh---hhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhch
Confidence 3344555554 7899999999888875211 223344446678899999999998888876 45875432 23456
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 341 GYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQE 420 (675)
Q Consensus 341 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 420 (675)
.+.+.|.+++|..-|+..++.. |+..+ ...++.+.-..+ ++ ......+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~-------e~---------~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQ-------EH---------WVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHH-------HH---------HHHHHHHHHHhcCCchhh
Confidence 6789999999999999998863 32211 122222221111 11 122334555667899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 421 AYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 421 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
|+.....+++. .+-|...|..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.+....++.++
T Consensus 174 ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 99999999885 35577778888899999999999998888777654 44566666777888899999999999999998
Q ss_pred CCCCCCHhH----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH---HHHHHHHHHhcCCHHHHH
Q 044815 501 AGLFPTKET----YTSM---------ICGYLRDGNISSAVKYFQRMNQIGCAPD--NIT---YGALISGLCKQSKLDEAC 562 (675)
Q Consensus 501 ~~~~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~---~~~l~~~~~~~g~~~~A~ 562 (675)
.+ |+... |..| +....+.+++.++++-.+...+.. |. .+. +..+-.++...|++.+|+
T Consensus 252 ld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 LD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred cC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHH
Confidence 54 55432 2222 122345678888888888877743 44 233 344556778889999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 563 QFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 563 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+...+.++ +.|+ ..++..-+.+|.-...+++|+.-|+....
T Consensus 328 qqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 328 QQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99999998 6776 56667788899999999999999998876
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-07 Score=102.56 Aligned_cols=367 Identities=11% Similarity=0.020 Sum_probs=225.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 299 HTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHT----YTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 299 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+......+...|++.+|....... ++... ...........|+++.+...++.+.......+........
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a-------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a 416 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAA-------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHH
Confidence 344455567778877776654332 12111 1112233445677777777766652211111222223344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGC------TPN--IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADK----ITYTI 442 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 442 (675)
..+...|++++|...+....+.-- .+. ......+...+...|++++|...+++..+.....+. ...+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 455677899999988887654210 111 112223344566789999999999988763222222 24456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHhHH
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGL---NP--DIHAYTTLIAAFCRQKKMKESEKFFQEAITA----GLF--P-TKETY 510 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~ 510 (675)
+...+...|++++|...+++.....- .+ ...++..+...+...|++++|...+++..+. +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 66677889999999999888764311 11 1234556677788899999999998877652 211 1 12334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH--H-H-
Q 044815 511 TSMICGYLRDGNISSAVKYFQRMNQI--GCAPD--NITYGALISGLCKQSKLDEACQFYESMIGK--GISPCEV--T-R- 580 (675)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~--~-~- 580 (675)
..+...+...|++++|...+++.... ...+. ...+..+.......|++++|.+.++++... ....... . .
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 55566677789999999998887542 11122 234445666778899999999998887542 1111110 1 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCh------hhHHHHHHHHHccCCHHHHHHHHHHHhcC----CCCC-CHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKKLWI------RTVNTLIRKLCSEKRVGMAALFFHKLLGK----DQNV-DRVSLAA 649 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~ 649 (675)
...+..+...|+.+.|..++......... ..+..+..++...|++++|...+++++.. +..+ ...++..
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 11224455688999999988775542111 11346777788899999999999988764 2221 1346777
Q ss_pred HHHHHHhcCchhHHHHHHHHHHh
Q 044815 650 LKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 650 l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++.++...|+.++|.+.+.++++
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999998876
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-06 Score=89.47 Aligned_cols=196 Identities=10% Similarity=0.022 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHH
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGC-APDN--ITYGALISGL 552 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~ 552 (675)
..+...+...|++++|...+++..+... .+...+..+...+...|++++|..++++..+..- .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3444455566666666666666665432 2344555556666666666666666666554211 1221 1233455556
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHHHH--H-HHHHHHHHcCCHHHHHHH--H-HHHhhC-CC-hhhH--HHHHHHHHc
Q 044815 553 CKQSKLDEACQFYESMIGKGI-SPCEVTR--V-TLAYEYCKQGDSATAMII--L-ESLDKK-LW-IRTV--NTLIRKLCS 621 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~-~p~~~~~--~-~l~~~~~~~g~~~~A~~~--~-~~~~~~-~~-~~~~--~~l~~~~~~ 621 (675)
...|++++|..+++++..... .+..... . .+...+...|..+.+.++ + ...... ++ ...+ ...+.++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666543211 1111111 1 223333334433222222 1 111111 11 1111 245556667
Q ss_pred cCCHHHHHHHHHHHhcCCCC--------CCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 622 EKRVGMAALFFHKLLGKDQN--------VDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.|+.++|...++.+...... .........+.++...|++++|.+.+..+++
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777766542211 0223344556667888888888888888765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.1e-06 Score=84.63 Aligned_cols=193 Identities=20% Similarity=0.131 Sum_probs=111.4
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCC
Q 044815 197 IACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGS 276 (675)
Q Consensus 197 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 276 (675)
.+...|+++.|...|-+... ..-.|.+......|.+|+.+++.+..+.. -..-|..+...|... |+
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~---~d 780 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANK---GD 780 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccc---hh
Confidence 44556666666666544321 12234566667788888888887766532 233455555666665 67
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 044815 277 IKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLE 356 (675)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 356 (675)
++.|.++|.+. ..++..|.+|.+.|++++|.++-.+.+ |.......|-+-..-+-+.|++.+|.++|-
T Consensus 781 fe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 781 FEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 88888777653 234566778888888888887765553 333445556665566666777777777664
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 357 RMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427 (675)
Q Consensus 357 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 427 (675)
.... |+. .|.+|-+.|..+..+++..+-.- ..-..|...+..-|-..|+...|...|-+
T Consensus 849 ti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 849 TIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred EccC----chH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 4322 332 34556666666655555443221 11123444455555556666666555543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-05 Score=83.22 Aligned_cols=539 Identities=11% Similarity=-0.019 Sum_probs=304.4
Q ss_pred ChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHH----------------HHHHHhcCChHHHHHH
Q 044815 112 GSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCM----------------VSSFAEIGRLKEGFSM 175 (675)
Q Consensus 112 ~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~l----------------i~~~~~~g~~~~A~~~ 175 (675)
+...|...|+.+..-. ..........+..+.+..+++.|....-.. --.|.+.++...|+.-
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 3445677776665432 123344456677888888888887663211 1146788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhHCC-
Q 044815 176 VIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADAS-SYKLMVVAYCRMGRVTEADRWLSAMLDRG- 253 (675)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 253 (675)
|+...+.. |.|...|..+..+|.+.|.+..|.++|++..... |+.. .---.....|..|++.+|+..+.......
T Consensus 585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99998876 6788999999999999999999999999988753 3322 22222335678899999999888775431
Q ss_pred -----CCCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----------------
Q 044815 254 -----AILDNATLTLLITAFCDKGF----RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLC----------------- 307 (675)
Q Consensus 254 -----~~~~~~~~~~ll~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------- 307 (675)
..--..++..+...+...|. ..-++.+++.|.-........+...|-.+.+++.
T Consensus 662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~i 741 (1238)
T KOG1127|consen 662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLII 741 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHH
Confidence 11111222222222222211 0122333333333322221112222222222211
Q ss_pred ------hcCCH---H---HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH
Q 044815 308 ------KKGWT---E---KAFRLFLKLVRSDNYKPNVHTYTAMISGYCK--------EEKMNRAEMLLERMKEQGLLPNT 367 (675)
Q Consensus 308 ------~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~ 367 (675)
..+.. | -+.+.+-.-++ ...+..+|..++..|.+ ..+...|+..+.+.++.. ..+.
T Consensus 742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~ 817 (1238)
T KOG1127|consen 742 LSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNE 817 (1238)
T ss_pred HHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccH
Confidence 11111 0 00011100000 11223445555544443 123346777787777642 2366
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.+|+.|.-. ...|.+.-|...|-+-.... +....+|..+.-.+.+..+++.|...|....... +.|...|-......
T Consensus 818 ~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~ 894 (1238)
T KOG1127|consen 818 GLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIP 894 (1238)
T ss_pred HHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhH
Confidence 677766544 66678887777776655543 5567888888888999999999999999887653 45666776666666
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----------HHHHHCCCCCCHhHHHHH
Q 044815 448 LKQAETKQALGLFCRMVK----AGLNPDIHAYTTLIAAFCRQKKMKESEKFF----------QEAITAGLFPTKETYTSM 513 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~----------~~~~~~~~~~~~~~~~~l 513 (675)
...|+.-++..+|..--+ .|-.++..-+..........|+.++-...- +..... .+-....|...
T Consensus 895 eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~ 973 (1238)
T KOG1127|consen 895 EAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG-HPQLCFAYAAN 973 (1238)
T ss_pred HHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHH
Confidence 778888888888866221 222344433333333444555554433332 233332 33345677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQI-GCAPDNITYGA----LISGLCKQSKLDEACQFYESMIGKGISPCEVTR--VTLAYE 586 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~--~~l~~~ 586 (675)
....-..+.+.+|..+..+.... ..+-|...|+. +.+.++..|.++.|..-+. ..|-.+.- ...-.+
T Consensus 974 gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~------~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 974 GSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASW------KEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc------ccchhHHHHHhhhhHH
Confidence 77777777888877777665421 01234445553 3334555666665444332 22211111 111112
Q ss_pred HHHcCCHHHHHHHHHHHhh----CCC-hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchh
Q 044815 587 YCKQGDSATAMIILESLDK----KLW-IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYA 661 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 661 (675)
..-.|+++++.+.|+++.. ..+ +.....++......+.-+.|...+-+....-+. +......|.-.+.-..+-.
T Consensus 1048 lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~-~~~sll~L~A~~ild~da~ 1126 (1238)
T KOG1127|consen 1048 LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKV-QASSLLPLPAVYILDADAH 1126 (1238)
T ss_pred HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCcc-chhhHHHHHHHHHHhhhhh
Confidence 2557888889998888654 122 334566677777788888888877777666443 5665555555554444444
Q ss_pred HHHHHHHHH
Q 044815 662 LFSDLSQRI 670 (675)
Q Consensus 662 ~A~~~~~~~ 670 (675)
....+.+++
T Consensus 1127 ~ssaileel 1135 (1238)
T KOG1127|consen 1127 GSSAILEEL 1135 (1238)
T ss_pred hhHHHHHHH
Confidence 444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-06 Score=86.63 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVH-TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
..|..+...+...|+.+++.+.+.+..+......+.. ........+...|++++|.+.+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455555555566666666555555444332222211 11112223345566666666666665531 112223221 11
Q ss_pred HHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 376 GHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 376 ~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
.+.. .+..+.+.+.++.... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 1211 2333333333332111 111122233344445555666666666666655542 223344455555555555
Q ss_pred CHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGL-NPDI--HAYTTLIAAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 499 (675)
++++|...+++...... .++. ..|..+...+...|++++|..+++++.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55555555555544321 1111 123344444555555555555555543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-06 Score=78.96 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=169.4
Q ss_pred HHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHH--------------HHHHHhcCCh
Q 044815 104 VASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCM--------------VSSFAEIGRL 169 (675)
Q Consensus 104 ~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~l--------------i~~~~~~g~~ 169 (675)
+-.+.++.+...|.+....-..+. +.+......++..+.....|..|.+-|+++ .+++.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 333444455556665554332221 223344556777778888888888888765 4478889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 170 KEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAM 249 (675)
Q Consensus 170 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 249 (675)
.+|+.+...|.+.. ..-..+...-.......+++..+..+.++....| +..+.+...-...+.|++++|.+-|+..
T Consensus 95 ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 95 ADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHH
Confidence 99999998886641 1111222222223445788888999988887433 4555555566677899999999999998
Q ss_pred hHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChh----------------------------hHHH
Q 044815 250 LDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVY----------------------------THTV 301 (675)
Q Consensus 250 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------~~~~ 301 (675)
.+.+.--....|+..+..|.+ ++++.|++...+++++|++..+. .+|.
T Consensus 171 lqvsGyqpllAYniALaHy~~----~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHYSS----RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HhhcCCCchhHHHHHHHHHhh----hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 877655567889998888877 68999999999999887632111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG 381 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 381 (675)
-...+.+.|+++.|.+.+..|..+.....|.+|...+.-.- ..+++.+..+-+.-+++... -...||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 22234456666666666655544333344555554432211 12334443443444444322 23456666666677766
Q ss_pred CHHHHHHHHHH
Q 044815 382 NFERAYDLMDL 392 (675)
Q Consensus 382 ~~~~A~~~~~~ 392 (675)
-++-|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 66666666544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-06 Score=87.46 Aligned_cols=363 Identities=16% Similarity=0.165 Sum_probs=186.2
Q ss_pred CHHHHHHHHHH--HHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------
Q 044815 257 DNATLTLLITA--FCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN------- 327 (675)
Q Consensus 257 ~~~~~~~ll~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------- 327 (675)
|..|-..+++- |.. .|+.+.|.+-.+-+. +..+|..+.+++.+..+++-|.-.+..|....|
T Consensus 725 d~~TRkaml~FSfyvt---iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVT---IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEE---eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 45555555432 222 267777776666554 335677777777777776666555444422111
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 044815 328 -YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYN 406 (675)
Q Consensus 328 -~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 406 (675)
-.++ .+-.-........|.+++|..+|++.+. |..|=..|-..|.+++|.++-+.-.+..+ ..||.
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy 862 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYY 862 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHH
Confidence 1121 1111112223356777888888877665 23344556667788888776654333221 23555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----------hCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAF----------QREL---------QADKITYTILLSEHLKQAETKQALGLFCRMVKAG 467 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~----------~~~~---------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 467 (675)
....-+-..++.+.|++.|++.- ...+ ..|...|.--...+...|+.+.|+.+|.....
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 55666666777777777776531 1110 11233333344444555666666666655443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044815 468 LNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGA 547 (675)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 547 (675)
|-.++...|-.|+.++|-++-++- -|....-.|.+.|-..|++.+|..+|.+.+. +..
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsn 998 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSN 998 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 334455555566666666554432 2334444566667777777777777766542 222
Q ss_pred HHHHHHh---------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------H
Q 044815 548 LISGLCK---------------QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES---------L 603 (675)
Q Consensus 548 l~~~~~~---------------~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---------~ 603 (675)
.|+.|-. ..+.-.|.++|++. |. -....+..|-+.|.+.+|+++--+ +
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 2222111 11222233333322 11 111123456666766666653221 1
Q ss_pred hh----CCChhhHHHHHHHHHccCCHHHHHHHHHHHh--------------------------cCCCCCCHH----HHHH
Q 044815 604 DK----KLWIRTVNTLIRKLCSEKRVGMAALFFHKLL--------------------------GKDQNVDRV----SLAA 649 (675)
Q Consensus 604 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------~~~~~p~~~----~~~~ 649 (675)
.+ ..|+...+.-.+.++...++++|..++-.+. .++-.|+.. .+..
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 11 1244444444444555555555554433221 122233433 5677
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhc
Q 044815 650 LKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 650 l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
++..|.++|.|..|-+-|..+-.+
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhH
Confidence 889999999998888777665443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.1e-06 Score=93.92 Aligned_cols=386 Identities=11% Similarity=0.016 Sum_probs=196.0
Q ss_pred ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 044815 148 NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYK 227 (675)
Q Consensus 148 ~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 227 (675)
..++...+.......+...|++.+|........... .-..............|+++.+..+++.+.......++....
T Consensus 336 ~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~ 413 (903)
T PRK04841 336 LAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVL 413 (903)
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHH
Confidence 344555666666777777888877766544431110 001112222334455677777777776653211111222233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhHCCC------CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC----hh
Q 044815 228 LMVVAYCRMGRVTEADRWLSAMLDRGA------ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN----VY 297 (675)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 297 (675)
.....+...|++++|..++......-. .+....-...+.+..... .|++++|...+++....-...+ ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN-DGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344555677888888888777644210 011111111111111111 2678888887777655311111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-C
Q 044815 298 THTVLIDGLCKKGWTEKAFRLFLKLVRSDN----YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ----GLL--P-N 366 (675)
Q Consensus 298 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~ 366 (675)
..+.+...+...|++++|...+.+...... ......++..+...+...|++++|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345555666777888888777776653211 0111233445556666778888887777765542 211 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH-
Q 044815 367 TNTYTSLIYGHCKVGNFERAYDLMDLMGKEG--CTP--NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA-DKITY- 440 (675)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~- 440 (675)
...+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+++........ ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2233444555666678877777777654321 111 13334445566667777777777776664321000 00000
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHh
Q 044815 441 ----TILLSEHLKQAETKQALGLFCRMVKAGLNPD---IHAYTTLIAAFCRQKKMKESEKFFQEAITA----GLFP-TKE 508 (675)
Q Consensus 441 ----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 508 (675)
...+..+...|+.+.|...+........... ...+..+..++...|+.++|...++++... |... ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 0112333446677777666655433211111 011234555566667777777777666542 1111 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
+...+..++.+.|+.++|...+.+..+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555666777777777777766653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-08 Score=94.87 Aligned_cols=252 Identities=14% Similarity=0.080 Sum_probs=146.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 454 (675)
+-+.-.|.+..++.-.+ .....-..+......+.+++...|+++.++.- +... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---IKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---hccC-CChhHHHHHHHHHHHhCccchH
Confidence 34455688888876555 22221122344455677888888887755433 2222 3566666655555554445555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 455 QALGLFCRMVKAGLNP-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRM 533 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (675)
.++.-+++.......+ +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443332222 2222233334555678888888777542 35666777778888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--C
Q 044815 534 NQIGCAPDNITYGALISGLC----KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--L 607 (675)
Q Consensus 534 ~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 607 (675)
.+. ..|.. ...+..++. -.+.+++|..+|+++.+. ..++..+.+.++.+....|++++|.+++++.... .
T Consensus 158 ~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 763 34433 333444332 234678888888887654 3456667777777788888888888877775442 3
Q ss_pred ChhhHHHHHHHHHccCCH-HHHHHHHHHHhcCCCC
Q 044815 608 WIRTVNTLIRKLCSEKRV-GMAALFFHKLLGKDQN 641 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~ 641 (675)
++.+...++.+....|+. +.+.+++.++....|.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 455665666666666666 6666777777666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-08 Score=98.01 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=122.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 410 DGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMK 489 (675)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (675)
.-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34566777777777777776653 3455667777777777777777777777766654 335666666666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM- 568 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 568 (675)
+|.+.++.-+...++ |..+... ...+++.. + ..+.....+....++|-++
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~--------------~---------~s~~~~~~l~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFEN--------------T---------KSFLDSSHLAHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhcccc-CccccccC--------------C---------cCCCCHHHHHHHHHHHHHHH
Confidence 777777666654321 0000000 00000000 0 0000111122222233333
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 569 IGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 569 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
...+..+|..+...|+-.|.-.|++++|.+.|+.+.. +.+...||-|+-.++...+.++|+..|.++++..|. -...
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~ 500 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRV 500 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeee
Confidence 2333334444555555555555666666666655433 234555666666666666666666666666666555 3445
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 647 LAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 647 ~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+..|+-.|...|.|++|.+.+=.++
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 5556666666666666666555444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-08 Score=92.78 Aligned_cols=249 Identities=12% Similarity=0.110 Sum_probs=149.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 341 GYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQE 420 (675)
Q Consensus 341 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 420 (675)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444678888776555 222211222344556677777888776543 3333333 5666665555554444345555
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 421 AYELLKKAFQRELQ-ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 421 A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 499 (675)
+..-+++....... .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66555554433322 23333333345566778888888877542 356667777888888888888888888887
Q ss_pred HCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044815 500 TAGLFPTKETYTSMICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP 575 (675)
Q Consensus 500 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 575 (675)
+.+ +..+...+..++.. .+++.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++++.++.+..
T Consensus 159 ~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 642 23344444444432 23588888888887654 4567788888888888888888888888888764322
Q ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHhh
Q 044815 576 CEVTRVTLAYEYCKQGDS-ATAMIILESLDK 605 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 605 (675)
+..+...++......|+. +.+.+++.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 345666677777777777 566677777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-07 Score=91.51 Aligned_cols=216 Identities=17% Similarity=0.211 Sum_probs=145.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4568899999999999999875 5578899999999999999999999999998864 4577788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-----------HHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAA-----------FCRQKKMKESEKFFQEAITA-GLFPTKETYTSMICGYLRDGNI 523 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~-----------~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 523 (675)
|+..++..+....+ |..+..+ +.....+....++|-++... +..+|..+...|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999876422 1111111 01111233344444444432 3335666666666666666677
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 524 SSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 524 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
++|+..|+..+. ++|+ ..+||.|...++...+.++|+..|.++++ +.|.- ...+.|+-.|...|.+++|.+.|-
T Consensus 447 draiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 447 DRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777766665 3443 45666666666666666777777777666 55543 233455555555666655555443
Q ss_pred H
Q 044815 602 S 602 (675)
Q Consensus 602 ~ 602 (675)
.
T Consensus 523 ~ 523 (579)
T KOG1125|consen 523 E 523 (579)
T ss_pred H
Confidence 3
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-06 Score=82.40 Aligned_cols=219 Identities=8% Similarity=0.055 Sum_probs=147.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH--
Q 044815 447 HLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK-KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNI-- 523 (675)
Q Consensus 447 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-- 523 (675)
+...++.++|+.+..++++.. +-+..+|+....++...| +++++...++++.+.+. .+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 334566777777777777653 224445655555666666 56888888888877654 3555676665555566653
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCH----HHH
Q 044815 524 SSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQ---GDS----ATA 596 (675)
Q Consensus 524 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~----~~A 596 (675)
++++.+++++.+.. +-|..+|+....++...|+++++++.++++++.+.. +...++.....+.+. |+. +++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 66788888887743 235667888777888888888888888888885543 345555555555544 222 456
Q ss_pred HHHHHHHh-h-CCChhhHHHHHHHHHcc----CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC------------
Q 044815 597 MIILESLD-K-KLWIRTVNTLIRKLCSE----KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN------------ 658 (675)
Q Consensus 597 ~~~~~~~~-~-~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------ 658 (675)
+.+..++. . +.+..+|+.+...+... ++..+|.+++.++++.+++ +...+..|+..|....
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 66664543 3 45778898888888773 4557788898888888877 7888889999987632
Q ss_pred ------chhHHHHHHHHH
Q 044815 659 ------KYALFSDLSQRI 670 (675)
Q Consensus 659 ------~~~~A~~~~~~~ 670 (675)
..++|.++++.+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 236677777665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-06 Score=94.73 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=73.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTL 583 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l 583 (675)
+...+..|.....+.|++++|..+++...+ +.|| ......++.++.+.+++++|+..+++.++ ..|+. .....+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 455566666666666666666666666655 3454 33444555556666666666666666665 33433 333445
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 584 AYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
+.++.+.|++++|..+|+++..+ .+..++..++..+.+.|+.++|...|+++++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55566666666666666665531 23455555666666666666666666666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-07 Score=85.25 Aligned_cols=186 Identities=14% Similarity=0.107 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF-P-TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN---- 542 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---- 542 (675)
......+..++..+...|++++|...|+++...... | ....+..+..++...|++++|+..++++.+.. |+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 345667777888888888899998888888775421 1 12466777888888888889988888887743 321
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHH
Q 044815 543 ITYGALISGLCKQ--------SKLDEACQFYESMIGKGISPCEVT-RVTLAYEYCKQGDSATAMIILESLDKKLWIRTVN 613 (675)
Q Consensus 543 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 613 (675)
.++..+..++... |++++|.+.++++++. .|+... ...+... +.... .. .....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~-----~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RL-----AGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HH-----HHHHH
Confidence 2445555555544 6788888888888873 444322 1111110 00000 00 00123
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCC-C-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQN-V-DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.++..+.+.|++++|+..++++++..|+ | ....+..++.++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667788999999999999999988764 2 3578899999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.8e-06 Score=88.64 Aligned_cols=222 Identities=12% Similarity=0.134 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 044815 331 NVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-----TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAY 405 (675)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 405 (675)
+...|-..|......++.++|.++.++.+.. +.+. ...|.++++.-..-|.-+...++|+++.+.. -....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3455666666677777777777777776653 2111 2345555555555566666677777776642 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD---IHAYTTLIAAF 482 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 482 (675)
..|...|.+.+.+++|.++|+.|.++ +......|...+..+.++.+-+.|..++.+..+. -|. .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 66777777777777777777777765 3355666777777777777777777777666654 222 23334444455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 044815 483 CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN--ITYGALISGLCKQSKLD 559 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~ 559 (675)
.+.|+.+.++.+|+..+...+ .-...|+.+|+.-.++|+.+.+..+|++....++.|.. ..|...+.-=-..|+-+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 566777777777776665532 34566777777777777777777777777666655542 24444444333344433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.6e-06 Score=88.71 Aligned_cols=232 Identities=12% Similarity=0.094 Sum_probs=180.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044815 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNP-----DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE 508 (675)
Q Consensus 434 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 508 (675)
+.....|-..|......++.++|.++.++.... +.+ -...|.++++.-...|.-+...++|+++.+. .-...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 445567888888888899999999999888764 222 2346777777777778889999999999885 23466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHH-HHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC--EVTR-VTLAY 585 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~-~~l~~ 585 (675)
.|..|...|.+.+++++|.++++.|.+. .......|..++..+.++++-+.|..++.++++. -|. +.-+ ...+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 7899999999999999999999999875 3356778999999999999999999999999984 343 3333 44667
Q ss_pred HHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhcCchh
Q 044815 586 EYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV--SLAALKNACYESNKYA 661 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~ 661 (675)
.-.+.|+.+.+..+|+..... .-...|+.+++.-.++|..+.++.+|++++.++..|-.. .|..++..--+.|+-.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 778999999999999997653 356789999999999999999999999999998875543 4555555445556655
Q ss_pred HHHHHHHHHH
Q 044815 662 LFSDLSQRIA 671 (675)
Q Consensus 662 ~A~~~~~~~~ 671 (675)
.+...=.++.
T Consensus 1689 ~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1689 NVEYVKARAK 1698 (1710)
T ss_pred hHHHHHHHHH
Confidence 4444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-06 Score=79.82 Aligned_cols=148 Identities=11% Similarity=0.118 Sum_probs=106.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL 558 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 558 (675)
+-.|...|+++......+.+.. |. . .+...++.+++...+++..+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4457788888876554432221 11 0 1223677788888888877643 44677888888888899999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHHcCC--HHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 559 DEACQFYESMIGKGISPC-EVTRVTLAYE-YCKQGD--SATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 559 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
++|...|++..+ +.|+ ...+..++.+ |...|+ .++|.+++++..+ +.+...+..++..+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998888 4454 4555667776 466676 4888888888766 346777888888888899999999999
Q ss_pred HHHhcCCCC
Q 044815 633 HKLLGKDQN 641 (675)
Q Consensus 633 ~~~~~~~~~ 641 (675)
+++++..+.
T Consensus 168 ~~aL~l~~~ 176 (198)
T PRK10370 168 QKVLDLNSP 176 (198)
T ss_pred HHHHhhCCC
Confidence 988888775
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-07 Score=78.95 Aligned_cols=122 Identities=13% Similarity=0.014 Sum_probs=100.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 527 VKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..++++..+ +.|+. +..+...+...|++++|...|+.++. +.| +...+..++.++.+.|++++|...|++...
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456677766 34654 55677788999999999999999998 445 456778899999999999999999999876
Q ss_pred --CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 606 --KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 606 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
+.+...+..++.++...|++++|+..|+++++..|. +...+...+.++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 457888999999999999999999999999999998 8888877766554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.4e-07 Score=76.51 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=66.9
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 493 KFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
.++++..+.+ |+ .+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+++++
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 4455555532 33 34455666667777777777777776632 22455666677777777777777777777776
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 573 ISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 573 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.| +...+..++.++.+.|+.++|...|+....
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334 345566677777777777777777777544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0006 Score=67.94 Aligned_cols=423 Identities=11% Similarity=0.096 Sum_probs=206.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHH
Q 044815 185 PLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLL 264 (675)
Q Consensus 185 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 264 (675)
|.|..+|+.|++-+..+ ..+++.+.++++... ++-.+..|..-|..-.+.++++....+|.+.+..-. +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 77889999999877655 999999999999864 455788899999999999999999999999876533 45555555
Q ss_pred HHHHHhcCCCCCHHH----HHHHHHH-HHHcCCCCC-hhhHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCCC-
Q 044815 265 ITAFCDKGFRGSIKQ----AFELLEE-MVRKGWKPN-VYTHTVLIDG---------LCKKGWTEKAFRLFLKLVRSDNY- 328 (675)
Q Consensus 265 l~~~~~~~~~~~~~~----a~~~~~~-~~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~- 328 (675)
|.-..+.. +.... ..+.|+- +.+.|+++- -..|+..+.. |....+++...+++++++...-.
T Consensus 93 l~YVR~~~--~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 93 LSYVRETK--GKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHc--cCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 54443332 22222 2233333 233444332 2234443332 23334555566666666532100
Q ss_pred ----CCCHHHHHHHHHHHH-------hcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHH
Q 044815 329 ----KPNVHTYTAMISGYC-------KEEKMNRAEMLLERMKE--QGLLPNTNTYTSLIYGHCKVGNFER--AYDLMDLM 393 (675)
Q Consensus 329 ----~~~~~~~~~li~~~~-------~~~~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m 393 (675)
-.|-..|..=|+... +...+-.|.++++++.. .|...+..+ .-..|--++ ..+++...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHH
Confidence 001111111111111 11123333333333322 122111111 000000111 11111111
Q ss_pred hh----cCCC-CC--------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------
Q 044815 394 GK----EGCT-PN--------IYAYNAIIDGLCKK-GRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE------- 452 (675)
Q Consensus 394 ~~----~g~~-~~--------~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------- 452 (675)
++ .++. .+ ..+|+..+..+.-+ .-+-++...+... -+.+.+.|+
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~---------------s~l~~~~~d~~~a~~~ 308 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEI---------------SDLLTEKGDVPDAKSL 308 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------hHHHHHhcccccchhh
Confidence 10 0100 00 00111111000000 0011111111110 011222222
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR---QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKY 529 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 529 (675)
.+++..+++..+..-..-+..+|..+..---. ....+.....++++...-..--.-+|..+++.--+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 34555555554443222233333333221111 112444455555555432222234566666666666677777778
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 044815 530 FQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVT-RVTLAYEYCKQGDSATAMIILESLDKKL 607 (675)
Q Consensus 530 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 607 (675)
|.+..+.+..+ +...+++++.-+| .++.+.|.++|+--+++ -+|... ....+.-+...++-..|..+|+++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 87777766555 5556666666555 45667777777766552 123323 3456666677777777777777766541
Q ss_pred -----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 608 -----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 608 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
....|+.++..-..-|+...+.++-++....
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 2456777777777778887777777665544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-06 Score=79.28 Aligned_cols=186 Identities=13% Similarity=0.003 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--h
Q 044815 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD---IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK--E 508 (675)
Q Consensus 434 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 508 (675)
......+..+...+...|++++|...++++.... +.+ ...+..+..++.+.|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456678888889999999999999999998763 222 246778889999999999999999999986432111 2
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044815 509 TYTSMICGYLRD--------GNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVT 579 (675)
Q Consensus 509 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 579 (675)
.+..+..++... |++++|.+.++++.+. .|+.. .+..+... .. ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HH--------HHH
Confidence 455566666654 7889999999999874 45532 22222111 00 000 00 011
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDKK-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
...++..|.+.|++++|+..++++... | ....+..++.++.+.|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235677788999999999999987652 2 245788899999999999999999888766553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=89.00 Aligned_cols=208 Identities=13% Similarity=0.043 Sum_probs=91.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 522 (675)
+...+.+.|-...|+.++++.. .|..+|.+|+..|+..+|..+..+..++ .|+...|..+++......-
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 3344444444444544444432 2333444444445555554444444441 2444444444444443334
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
+++|.++.+..... .-..+.....+.++++++.+.++.-.+ +.| -..+|+.++.+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 44444444432210 111111111224445555555554444 111 12344444444555555555555444
Q ss_pred HHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 602 SLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 602 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.... +++...||.+..+|.+.|+-.+|...++++++-+.. +...|.+..-...+.|.+++|.+++.+++
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 4332 233444555555555555555555555555554433 34444444444455555555555554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-05 Score=77.78 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=151.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 298 THTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGH 377 (675)
Q Consensus 298 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 377 (675)
.-..+...+.+.|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 34556677777888888888877652 466677788888888888887777666 356777777777766
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 378 CKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 457 (675)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|..+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 6655677777777654322 22223333344678888888887776643 345567777777777888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 458 GLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 458 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
+.|.....-. +.+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8887777642 3346678888888888888888888888888776 35666677777777788888888888877764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0013 Score=69.66 Aligned_cols=121 Identities=21% Similarity=0.220 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCC-ChhhHHHH-HH
Q 044815 544 TYGALISGLCKQSKLD---EACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDKKL-WIRTVNTL-IR 617 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l-~~ 617 (675)
+.+.+++.+.+.++.. +|+-+++.-+. ..|... +-..++..|+-.|-+..|.+.|..+..+. ...+...+ .+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHH
Confidence 3466778888888765 45555555544 334333 44668889999999999999999875432 11233333 33
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLS 667 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 667 (675)
.+...|++..|...++..+..--.--..+-.. +...++.|.+.+-.++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~ey-I~~AYr~g~ySkI~em~ 564 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEY-IALAYRRGAYSKIPEML 564 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHH-HHHHHHcCchhhhHHHH
Confidence 45568899999988887665422211223332 33346677776665554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0013 Score=69.58 Aligned_cols=423 Identities=13% Similarity=0.075 Sum_probs=223.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044815 163 FAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEA 242 (675)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 242 (675)
+.+.|+.++|..+++.....+ ..|..|...+-.+|.+.|+.++|..+|++.... -|+......+..+|.+.+.+.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 578899999998888877665 348899999999999999999999999999876 46676667777788888887655
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhcCC-CC------CHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHH
Q 044815 243 DRWLSAMLDRGAILDNATLTLLITAFCDKGF-RG------SIKQAFELLEEMVRKG-WKPNVYTHTVLIDGLCKKGWTEK 314 (675)
Q Consensus 243 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~------~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 314 (675)
.+.--+|-+. ..-+...+-.+++.....-. .. -+.-|.+..+.+.+.+ .--+..-...-...+-..|..++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5444444442 22355666666666554311 00 1223455566665543 11122222223345567889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------
Q 044815 315 AFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC---------------- 378 (675)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---------------- 378 (675)
|.+++..-....-..-+...-+.-+..+...+++.+..++-.++...|.. | |...++.++
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhh
Confidence 99998433322223334445556677788889999999999998887544 2 333222222
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGL---CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
..+..+...+..++..... ....|-+-+..+ -.-|+.+++...|-+-... .| .|..=+..|...=..++
T Consensus 285 ~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~--kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD--KP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC--Cc---HhHhhHHHhhccCCHHH
Confidence 1223333333333333221 112222333333 3457777766555332211 11 11111222222222233
Q ss_pred HHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH---HC------CCCCCHh------
Q 044815 456 ALGLFCRMVKAGLNPDIH-------AYTTLIAAFCRQKK-----MKESEKFFQEAI---TA------GLFPTKE------ 508 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~-----~~~A~~~~~~~~---~~------~~~~~~~------ 508 (675)
...++....... ++.. .+...+..-.-.|. -+.-..++.+.. +. ++.|+..
T Consensus 357 ~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ 434 (932)
T KOG2053|consen 357 LKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDEL 434 (932)
T ss_pred HHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHH
Confidence 333333322211 1100 00111111111121 122222222221 11 1222322
Q ss_pred ---HHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044815 509 ---TYTSMICGYLRDGNIS---SAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVT 582 (675)
Q Consensus 509 ---~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 582 (675)
+-+.|++.+-+.++.. +|+-+++...... +.|..+=-.+|+.|+-.|-+..|.++|+.+--+.+.-|...|.
T Consensus 435 llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~- 512 (932)
T KOG2053|consen 435 LLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL- 512 (932)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-
Confidence 2355667777777654 4555555544432 2344455567777888888888888888876555655433322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh
Q 044815 583 LAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+...+.-.|++..+...+....+
T Consensus 513 ~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 513 IFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHHHHhcccchhHHHHHHHHHH
Confidence 33344455666666666655433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-05 Score=73.52 Aligned_cols=220 Identities=8% Similarity=0.059 Sum_probs=139.5
Q ss_pred CChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHH
Q 044815 147 GNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELG-LVEYAEEVFDEMCARGVCADASS 225 (675)
Q Consensus 147 ~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 225 (675)
+.|.++...|..+ +...++.++|+.+..++++.+ |-+..+|+.-..++...| .+++++..++++.+.. +.+..+
T Consensus 34 ~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqa 108 (320)
T PLN02789 34 PEFREAMDYFRAV---YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQI 108 (320)
T ss_pred HHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHH
Confidence 3444455444443 445677888888888888765 455567777777777777 5788999988888764 446677
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 044815 226 YKLMVVAYCRMGRV--TEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLI 303 (675)
Q Consensus 226 ~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (675)
|+.-...+.+.|+. +++..+++++.+.... |...|......+... |+++++++.++++++.++. |..+|+...
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l---~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTL---GGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 87766666666653 6678888888776543 556666666555554 6788888888888876544 566666666
Q ss_pred HHHHhc---CCH----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 304 DGLCKK---GWT----EKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKE----EKMNRAEMLLERMKEQGLLPNTNTYTS 372 (675)
Q Consensus 304 ~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~m~~~g~~p~~~~~~~ 372 (675)
..+.+. |.. +++++...+.+... +-|...|+.+...+... ++..+|...+.+....++ .+......
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~ 260 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSD 260 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHH
Confidence 555444 222 35566655555533 34556676666666552 334556666666555322 24556666
Q ss_pred HHHHHHh
Q 044815 373 LIYGHCK 379 (675)
Q Consensus 373 li~~~~~ 379 (675)
|++.|+.
T Consensus 261 l~d~~~~ 267 (320)
T PLN02789 261 LLDLLCE 267 (320)
T ss_pred HHHHHHh
Confidence 6666664
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-05 Score=87.01 Aligned_cols=238 Identities=11% Similarity=0.091 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044815 366 NTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLS 445 (675)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 445 (675)
+...+..|+..|...+++++|.++.+...+.. +-....|..+...+.+.++.+++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 45677888888888999999999998776652 22344444455567777776666554 2 233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 525 (675)
......++.-...+...|... .-+...+..+..+|-+.|+.++|..+|+++++.. .-|..+.|.+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333444453344444455543 3345577888889999999999999999999887 35788888888888888 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 526 AVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
|..++.+.... +...+++.++.+++.++.+ ..|+...+ ..+.......-..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~----------- 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF----------- 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc-----------
Confidence 99988887653 5556678888888888887 33443222 2222211111001
Q ss_pred hCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 605 KKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 605 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..-..++..+-..|.+.+++++++.+++.+++.++. |.-....++..|.
T Consensus 220 -~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 -TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 112334455556677777888888888888888887 7777777776655
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-05 Score=69.54 Aligned_cols=205 Identities=16% Similarity=0.126 Sum_probs=144.5
Q ss_pred HhcCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 044815 448 LKQAETKQALGLFCRMVKA---G-LNPDIH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~---~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 522 (675)
+...+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 3456788899888887753 3 444443 45666667778899999999999887763 2222332222333456788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
+++|+++++...+.+ +.|..++-.-+...-..|+.-+|++-+.+.++. +..|...+..+...|...|++++|.=.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999988765 445667776676777788888888888877764 445788899999999999999999988888
Q ss_pred Hhh--CCChhhHHHHHHHHHccC---CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 603 LDK--KLWIRTVNTLIRKLCSEK---RVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 603 ~~~--~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
+.- +.++..+..+...+.-.| +.+-|.++|.++++..+. +...+..+.-.+..
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGIYLCGSA 237 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHHHHHHHH
Confidence 643 335555566666654433 778899999999988875 66666655544443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-08 Score=58.46 Aligned_cols=32 Identities=34% Similarity=0.667 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 218 GVCADASSYKLMVVAYCRMGRVTEADRWLSAM 249 (675)
Q Consensus 218 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 249 (675)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.2e-08 Score=58.39 Aligned_cols=29 Identities=41% Similarity=0.796 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 364 LPNTNTYTSLIYGHCKVGNFERAYDLMDL 392 (675)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (675)
.||..||++||.+||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0012 Score=66.02 Aligned_cols=426 Identities=14% Similarity=0.110 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhH
Q 044815 220 CADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTH 299 (675)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 299 (675)
+-|..+|+.||+-+-.+ .++++.+.++++... ..-....|...|..-.+. ++++.+.++|.+-...- .+...|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~s---kdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELAS---KDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHH--hhHhHH
Confidence 56899999999976555 999999999999875 333566777778777776 78999999999876653 345555
Q ss_pred HHHHHHHHh-cCCHH----HHHHHHHHHHhcCCCCCC-HHHHHHHHHH---------HHhcCChHHHHHHHHHHHHcCCC
Q 044815 300 TVLIDGLCK-KGWTE----KAFRLFLKLVRSDNYKPN-VHTYTAMISG---------YCKEEKMNRAEMLLERMKEQGLL 364 (675)
Q Consensus 300 ~~l~~~~~~-~g~~~----~A~~~~~~~~~~~~~~~~-~~~~~~li~~---------~~~~~~~~~A~~~~~~m~~~g~~ 364 (675)
...++---+ .|+.. ...+.|+-.+.+.|+.+- ...|+..+.. +..+.+++...++++++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 555443222 22222 223334444444443332 2234444432 23344556667777777653221
Q ss_pred CCHHHHH------HHHHHH-------HhcCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHH
Q 044815 365 PNTNTYT------SLIYGH-------CKVGNFERAYDLMDLMGK--EGCTPNIYAYNAIIDGLCKKGRVQE--AYELLKK 427 (675)
Q Consensus 365 p~~~~~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~ 427 (675)
-=...|+ .-|+.. -+...+..|.++++++.. .|+..+..+ .-..|--++ +.+++..
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKN 242 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHH
Confidence 0011111 111110 112233444444444332 122111111 001111111 1112211
Q ss_pred HHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHH----H-HHHHHHHHhcCC-------HH
Q 044815 428 AFQ----RELQ-ADKITYTILLSEHLKQAETKQALGLFCRM-VKAGLNPDIHA----Y-TTLIAAFCRQKK-------MK 489 (675)
Q Consensus 428 ~~~----~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m-~~~~~~p~~~~----~-~~li~~~~~~g~-------~~ 489 (675)
.++ .+.. .+..... ....-.+++. .-.+..|++.. | ...-+.+.+.|+ -+
T Consensus 243 ~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred HHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 111 0000 0000000 0001111111 11122222111 0 011122333344 34
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRD---GNISSAVKYFQRMNQI-GCAPDNITYGALISGLCKQSKLDEACQFY 565 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (675)
++..+++...+.-..-+..+|..+..---.. ...+.....+++.... ...|+ .+|..+++.-.+..-++.|+.+|
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHH
Confidence 5556666555432222344444443321111 1355666677776653 22333 46778888888888899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhCCChhhH-HHHHHHHHccCCHHHHHHHHHHHhcCCCCCC
Q 044815 566 ESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES-LDKKLWIRTV-NTLIRKLCSEKRVGMAALFFHKLLGKDQNVD 643 (675)
Q Consensus 566 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 643 (675)
.++.+.+..+-++-..+...-|...++.+-|.++|+- +.+-++...| ...++.+...|+-..|..+|++++..+..||
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 9999987777332223333445667889999999997 4554555444 7788889999999999999999999854444
Q ss_pred --HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 644 --RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 644 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...|..++.--..-|+.+.+.++-++...
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 46899999999999999998888776543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-06 Score=70.64 Aligned_cols=96 Identities=10% Similarity=-0.049 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
...+.++..+...|++++|.++|+-+.. +.+..-|..|+-++-..|++++|+..|.++...+|+ |+..+..++.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 4556677777778888888888877654 345666777777777888888888888888888877 7888888888888
Q ss_pred hcCchhHHHHHHHHHHhcc
Q 044815 656 ESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 656 ~~g~~~~A~~~~~~~~~~~ 674 (675)
..|+.+.|++.|+.++..|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 8888888888888777655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-05 Score=76.96 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044815 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSM 513 (675)
Q Consensus 434 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 513 (675)
.|+...+...+.+.........+..++.+..+ +-...........+...|++++|+..++.++... +-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45556666666655554444444333333222 1122222233334456788888888888877753 2345555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGD 592 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 592 (675)
.+.+.+.++.++|.+.++++... .|+ ......+..+|.+.|++++|+.++++..... +-|...|..|+.+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 77888888888888888888873 566 5556667788888888888888888877643 2356778888888888888
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 593 SATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 593 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
..+|... ....|.-.|++++|+..+.++.+..-. +..+|
T Consensus 424 ~~~a~~A---------------~AE~~~~~G~~~~A~~~l~~A~~~~~~-~~~~~ 462 (484)
T COG4783 424 RAEALLA---------------RAEGYALAGRLEQAIIFLMRASQQVKL-GFPDW 462 (484)
T ss_pred hHHHHHH---------------HHHHHHhCCCHHHHHHHHHHHHHhccC-CcHHH
Confidence 7776543 334566788888888888887666432 44443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.9e-05 Score=66.84 Aligned_cols=187 Identities=13% Similarity=0.069 Sum_probs=140.5
Q ss_pred hcCCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044815 414 KKGRVQEAYELLKKAFQR---E-LQADKI-TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKM 488 (675)
Q Consensus 414 ~~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 488 (675)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 356788999999888743 3 445554 35566777888999999999999988763 33333322223334456999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 489 KESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 489 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
++|.++++.+++.+. .|..++-.=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998873 56677777777777788888999988888774 5668999999999999999999999999999
Q ss_pred HhCCCCCCHHH-HHHHHHHHHHcC---CHHHHHHHHHHHhh
Q 044815 569 IGKGISPCEVT-RVTLAYEYCKQG---DSATAMIILESLDK 605 (675)
Q Consensus 569 ~~~g~~p~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~ 605 (675)
+- +.|.... +..++..+.-.| +.+.|.++|.+..+
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88 6675444 455776655444 55678889988766
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-05 Score=82.21 Aligned_cols=196 Identities=16% Similarity=0.085 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAY-ELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
.....+=.+...-|..++|- +++.++.+ ++..........+++.-.....+ ..+.+...+..|...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i 95 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARA 95 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHH
Confidence 33334444555566666653 44444322 22333333333333333333333 245668889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDE 560 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 560 (675)
..+.|++++|..+++.+.+..+ -+......++..+.+.+++++|+..+++.... .|+ ......+..++.+.|++++
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999998642 24556777888999999999999999999884 465 5667778888999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHH
Q 044815 561 ACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLI 616 (675)
Q Consensus 561 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~ 616 (675)
|..+|++++..+ |+ ..++..++..+...|+.++|...|++..+. +....|+.++
T Consensus 173 A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 173 ADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 999999999843 33 578888999999999999999999997663 3334444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-05 Score=71.14 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGL-CKQSK--LDEA 561 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 561 (675)
.++.+++...++..++.+. .+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4666677777777666543 466777777777777777777777777777643 22455666666653 55565 4777
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 562 CQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+++++.++. .|+ ...+..++..+.+.|++++|+..++++.+
T Consensus 130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777773 343 35556677777777777777777777654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-05 Score=69.34 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=124.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ 555 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 555 (675)
..+-..+...|+-+....+........ ..+......++....+.|++.+|...+++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 566677777888888888877755432 245566677888889999999999999998874 356788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--ChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 556 SKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKKL--WIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 556 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
|++++|..-|.+.++ +.|+ ...++.++..|.-.|+.+.|..++......+ +..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999988 4454 3566889999999999999999998876533 6667778888888999999998877
Q ss_pred HHH
Q 044815 633 HKL 635 (675)
Q Consensus 633 ~~~ 635 (675)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00014 Score=79.27 Aligned_cols=59 Identities=7% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
.+..+..+|-+.|+.++|..+++++++.+ +.|..+.|.+...|... +.++|.+++.+.+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44455555555555555555555555543 33444555555555555 5555555544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00024 Score=64.31 Aligned_cols=86 Identities=22% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044815 412 LCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK 487 (675)
Q Consensus 412 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 487 (675)
+.+..+++-|.+.+++|.+. .+..|.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444444444444444431 233333333333332 22344444455554443 24444444444444444555
Q ss_pred HHHHHHHHHHHHHC
Q 044815 488 MKESEKFFQEAITA 501 (675)
Q Consensus 488 ~~~A~~~~~~~~~~ 501 (675)
+++|..++++...+
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555554444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00054 Score=62.17 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=115.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044815 282 ELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ 361 (675)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 361 (675)
++.+.+.......+......-...|++.|++++|++..... -+......=+..+.+..+.+-|.+.+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444554433434344444456788889999998876542 23333334445566788889999999999873
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 362 GLLPNTNTYTSLIYGHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADK 437 (675)
Q Consensus 362 g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 437 (675)
-+..|.+-|..++.+ .+.+..|.-+|++|.++ .+|+..+.+-...++...|++++|..++++.+.+. ..++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 256677666666654 45688889999998874 47888888888888889999999999999888764 3455
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 044815 438 ITYTILLSEHLKQAETKQ-ALGLFCRMVKA 466 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~-A~~~~~~m~~~ 466 (675)
.+...++..-...|...+ ..+.+.++...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 555555555555554433 34445555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-05 Score=67.46 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
..+-..+...|+-+....+..+.... ...|.......+....+.|++.+|+..+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444555555555554443321 23333344444555555555555555555554432 44555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFY 565 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (675)
|+.++|..-|.+..+... -+...++.+...|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555555554321 233444445555555555555555555544432 113333444444445555555555443
Q ss_pred H
Q 044815 566 E 566 (675)
Q Consensus 566 ~ 566 (675)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-06 Score=71.68 Aligned_cols=110 Identities=12% Similarity=-0.073 Sum_probs=71.5
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--
Q 044815 529 YFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-- 605 (675)
Q Consensus 529 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 605 (675)
.+++... ..|+ ......+...+...|++++|.+.++.+...+. .+...+..++..|.+.|++++|...+++..+
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445544 2343 33455566667777777777777777776331 1345556677777777777777777777644
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 606 KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+...+..++..+...|++++|...|+++++.+|.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 234556666777777777777777777777777665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.2e-05 Score=65.99 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 615 LIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
+...+...|++++|+..++...... .....+...+.+|...|++++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4444555555555555554421111 13334445555555555555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.7e-05 Score=72.83 Aligned_cols=181 Identities=15% Similarity=0.102 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGA 547 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 547 (675)
.|+...+...+.+......-..+..++.+..+.+ -..--|. ..-.+...|++++|+..++.+... .|| ...+..
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~ 345 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYG-RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLEL 345 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHH-HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHH
Confidence 4556666666665554444444444433333311 1122233 333456789999999999998874 455 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
....+.+.|+.++|.+.+++++. ..|+ ......++.+|.+.|+..+|+.+++.... +.++..|..|..+|.+.|+
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 77789999999999999999999 5676 45567899999999999999999999765 4588899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhcc
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 674 (675)
..+|...+. ..|+-.|+|++|...+..+.++.
T Consensus 424 ~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 424 RAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 888876544 46888899999999999888765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.8e-05 Score=64.70 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=99.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN----ITYGALISGLCKQSKLDEACQFYESMIGKGISPCE--VTR 580 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~ 580 (675)
...|..++..+ ..++...+...++.+.+.. |+. ...-.+...+...|++++|...|+.+.+....|.. ...
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 45677777776 4889999999999998853 332 33445667789999999999999999996633322 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKKL-WIRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
..|+..+...|++++|+..++.+...+ ....+...+.+|.+.|++++|+..|++++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 567889999999999999998865543 34456788999999999999999999864
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.4e-05 Score=74.98 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRV 625 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 625 (675)
++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..+. .+...+..-+..|.+.+++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3333444445555555555554422 32 2222444444445555555555443331 2333344444455555566
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 626 GMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 626 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
+.|+++.+++.+..|. +..+|..|+.+|.+.|++++|...++
T Consensus 251 ~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 251 ELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 6666666666665555 55566666666666666666655544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.014 Score=60.23 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChH
Q 044815 274 RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPN----VHTYTAMISGYCKEEKMN 349 (675)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~ 349 (675)
.|++++|.+++-+|.++. ..+..+.+.|++-...+++.. +|-..| ...|+.+...+.....|+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 378999998888876652 245667778888776666532 222222 357888888888888899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 350 RAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 350 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
+|.+.|..-.. . ...++++.+..++++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+.
T Consensus 814 ~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~- 878 (1189)
T KOG2041|consen 814 EAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR- 878 (1189)
T ss_pred HHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc-
Confidence 99888876432 1 23466777777776665555443 345566677889999999999998876442
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 430 QRELQADKITYTILLSEHLKQAETKQALGLFCRM 463 (675)
Q Consensus 430 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 463 (675)
+. | ...+..|...+++.+|.++-+..
T Consensus 879 --s~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 879 --SL-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --cC-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1 23456677778888888776544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00014 Score=62.10 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 553 (675)
....+...+...|++++|...|+.+...+. .+...+..+...+.+.|++++|...+++..+.+ +.+...+..+..++.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 344444555555555555555555554432 244455555555555555555555555554432 223444444555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 044815 554 KQSKLDEACQFYESMIG 570 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~ 570 (675)
..|++++|...+++.++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.1e-05 Score=70.73 Aligned_cols=106 Identities=22% Similarity=0.167 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 627 (675)
-+.+.++|++|+..|.++++ +.|+..+| ..-+.+|.+.|.++.|++-.+....- ....+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35577888888888888888 66665555 44677888888888888877776552 245678888889999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 628 AALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 628 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
|++.|+++++.+|. +......|-.+--+.+.
T Consensus 168 A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 168 AIEAYKKALELDPD-NESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHhhhccCCC-cHHHHHHHHHHHHHhcC
Confidence 99999999888887 77666666655444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00023 Score=68.44 Aligned_cols=280 Identities=13% Similarity=0.021 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQ 450 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 450 (675)
......+.+..++.+|+..+...++.. +.+..-|..-+..+...|++++|.--.+.-.+... -......-.-+.+...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-Cccccccchhhhhhhh
Confidence 345567778888999999999888875 44566677777778888888888776665544321 1222444445555556
Q ss_pred CCHHHHHHHHHHHHHc---C-------------CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044815 451 AETKQALGLFCRMVKA---G-------------LNPDIHAYTTL-IAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSM 513 (675)
Q Consensus 451 ~~~~~A~~~~~~m~~~---~-------------~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 513 (675)
++..+|.+.++.-... + -+|.-..+..+ ..++...|++++|...--...+.. ....+..+
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHH
Confidence 6666666665522200 0 01111222222 223345566666666665555532 22233333
Q ss_pred HHHH--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHhC---CCCC
Q 044815 514 ICGY--LRDGNISSAVKYFQRMNQIGCAPDNITYGAL-------------ISGLCKQSKLDEACQFYESMIGK---GISP 575 (675)
Q Consensus 514 i~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~---g~~p 575 (675)
+++. --.++.+.|...|++.+.. .|+...-... .+-..+.|++.+|.+.|.+.+.. ...|
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3332 2455666677776666653 3554322111 11234566677777777766652 1222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHH--HHccCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHH
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRK--LCSEKRVGMAALFFHKLLGKDQNV-DRVSLAALKN 652 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 652 (675)
+...|...+....+.|+.++|+.-.++..+-+...++..+.++ +...+++++|.+.|+++.+....+ +..++.....
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQL 365 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 3334444555566667777766666665554433333333333 334666777777776666554321 2334444444
Q ss_pred HHHhc
Q 044815 653 ACYES 657 (675)
Q Consensus 653 ~~~~~ 657 (675)
++-++
T Consensus 366 aLkkS 370 (486)
T KOG0550|consen 366 ALKKS 370 (486)
T ss_pred HHHHh
Confidence 44333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00016 Score=72.12 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSK 557 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 557 (675)
|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++++..+.. +-+...+..-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444556666666666665543 22 23335555555555666666666655431 2244445555555666666
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 558 LDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
++.|+.+.+++.+ ..|+. .+|..|+.+|.+.|+++.|+..++.++
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666 44544 355666666666666666666666544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.4e-05 Score=59.29 Aligned_cols=91 Identities=20% Similarity=0.122 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
..++..+...|++++|...++++.+. .+...+..++..+...|++++|.+.++++++..+. +..++..++.++...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 34455555556666666666554431 22344555666666667777777777777776665 5566677777777777
Q ss_pred chhHHHHHHHHHHh
Q 044815 659 KYALFSDLSQRIAE 672 (675)
Q Consensus 659 ~~~~A~~~~~~~~~ 672 (675)
++++|...++++.+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 77777777776654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=58.05 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=57.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHh
Q 044815 608 WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN-KYALFSDLSQRIAE 672 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 672 (675)
++..|..++..+...|++++|+..|+++++.+|. +...|..++.++...| ++++|.+.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999998 8899999999999999 79999999999876
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=61.20 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=26.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
..++.+|.+.|++++|+.++++ .+.++. +......++.++.+.|++++|++.+++
T Consensus 29 ~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 29 YNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3345555555555555555554 333332 333334445555555555555555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=60.59 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC----hhhHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPC----EVTRVTLAYEYCKQGDSATAMIILESLDK-KLW----IRTVNT 614 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~ 614 (675)
++..++..+.+.|++++|...|+.+++.. |+ ...+..++.++.+.|++++|.+.++.+.. .|+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45567777888888999999888888742 32 24556688888888888888888888765 222 345777
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 615 LIRKLCSEKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
++.++.+.|+.++|...++++++..|+ +...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG-SSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC-ChhH
Confidence 788888888888888888888888876 4443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=4e-05 Score=55.52 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 615 LIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++..+.+.|++++|+..|+++++..|. +...+..++.++...|++++|..+++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677777778888888887777777 777777778888888888888877777765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.028 Score=55.39 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=44.0
Q ss_pred HHhcCChhHHHHHHHHHhhC--CCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHC----CCCCCHH
Q 044815 198 ACELGLVEYAEEVFDEMCAR--GVC------------ADASSYKLMVVAYCRMGRVTEADRWLSAMLDR----GAILDNA 259 (675)
Q Consensus 198 ~~~~g~~~~A~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~ 259 (675)
+.+.+.+++|.+.+..-... +.. +|...=+..+.++...|++.++..+++++... ....+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34677777777776554332 111 12222345566778888888888777776543 3346777
Q ss_pred HHHHHHHHHHh
Q 044815 260 TLTLLITAFCD 270 (675)
Q Consensus 260 ~~~~ll~~~~~ 270 (675)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 77776666555
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0058 Score=59.44 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 148 NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEM 179 (675)
Q Consensus 148 ~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~ 179 (675)
++++|.+.|+.....|...|++++|...|.+.
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 66677777777777777777777777666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00034 Score=57.99 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD----NITYGALISGLCKQSKLDEACQFYESMIGKGIS--PCEVTRVT 582 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~ 582 (675)
++..++..+.+.|++++|...++++.+.. |+ ...+..+..++.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44555666666677777777776666532 22 234455666666677777777777766653211 11234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh
Q 044815 583 LAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
++.++.+.|+.++|.+.++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 66666667777777776666544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.5e-05 Score=48.23 Aligned_cols=33 Identities=36% Similarity=0.744 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044815 334 TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN 366 (675)
Q Consensus 334 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 366 (675)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0029 Score=61.19 Aligned_cols=340 Identities=11% Similarity=0.012 Sum_probs=184.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKV 380 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 380 (675)
....+.+..++.+|+..+...++.. +.+..-|..-...+...+++++|.--.+.-.+. .|+ .....-.-.++...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 3455566666666666665555432 233344444555555555555555444443321 111 11222333333333
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHhcCCHHHHHH
Q 044815 381 GNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL-QADKITYTILL-SEHLKQAETKQALG 458 (675)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li-~~~~~~~~~~~A~~ 458 (675)
++..+|.+.++ +...| ....|+..++....... +|...+|..+- ..+.-.|+.++|..
T Consensus 131 ~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 34444443333 11111 11222333333332222 23344554443 35566899999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-------------HHHHHHHHHHcCCHHH
Q 044815 459 LFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKET-------------YTSMICGYLRDGNISS 525 (675)
Q Consensus 459 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~ 525 (675)
.--...+.+ ..+......-..++.-.++.+.|...|++.+..+ |+... +..-.+-..+.|++.+
T Consensus 191 ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 191 EAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 887777654 2233333333334456789999999999998865 44332 2222344567899999
Q ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 526 AVKYFQRMNQI---GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 526 A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
|.+.|.+.+.. ...|+...|........+.|+.++|+.-.++.++ +.|.- ..+..-+.++.-.++|++|.+-++
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998863 2345566777777888899999999999999988 44421 223334566777899999999999
Q ss_pred HHhhC-CCh---hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---hcCchhHHHHHHHHHH
Q 044815 602 SLDKK-LWI---RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY---ESNKYALFSDLSQRIA 671 (675)
Q Consensus 602 ~~~~~-~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~ 671 (675)
+..+. .+. .++.-...++-+..+.+. ..++--....-..++...|..++-++- ..|.-.+|+..|+.+-
T Consensus 346 ~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevg 421 (486)
T KOG0550|consen 346 KAMQLEKDCEIRRTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVG 421 (486)
T ss_pred HHHhhccccchHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHH
Confidence 86553 222 233333333333333221 111111111112234556665554442 3555567776666553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=48.19 Aligned_cols=33 Identities=33% Similarity=0.672 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 541 (675)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555555444444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=72.58 Aligned_cols=103 Identities=12% Similarity=-0.010 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
-...+...|++++|+..|+++++ ..|+ ...+..++.+|.+.|++++|+..++++.. +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45567788999999999999998 4454 46677889999999999999999999865 3467788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
+++|+..|+++++.+|. +......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999999999999987 76666555444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.03 Score=53.98 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=62.5
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCCCHHH--HHHH
Q 044815 335 YTAMISGYC--KEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC--KVGNFERAYDLMDLMGKEGCTPNIYA--YNAI 408 (675)
Q Consensus 335 ~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~l 408 (675)
|..|-.++. ..|+-..|.++-.+..+. +..|..-...++.+-. -.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 344444433 245666666655544321 3334444444444432 356777777777777652 22221 1222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 409 IDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVK 465 (675)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 465 (675)
.-.-.+.|+.+.|..+-++....- +.-...+...+...|..|+++.|+++++.-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 222334566666666655554432 22334455556666666666666666655443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0042 Score=60.38 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=119.2
Q ss_pred chhhhHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 044815 131 HFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEV 210 (675)
Q Consensus 131 ~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 210 (675)
.-...|...+..+...+++++|.+.|......+.+.++...|-..+.++.. +| +.+++++|++.
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~---------------~~-k~~~~~~Ai~~ 96 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAAN---------------CY-KKGDPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---------------HH-HHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------HH-HhhCHHHHHHH
Confidence 345566677778888999999999999999999888888777666655432 23 33366677766
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044815 211 FDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK 290 (675)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (675)
+++.. ..|...|++..|-..+.++-+. |-.. .|++++|++.|++..+.
T Consensus 97 ~~~A~---------------~~y~~~G~~~~aA~~~~~lA~~---------------ye~~--~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 97 YEKAI---------------EIYREAGRFSQAAKCLKELAEI---------------YEEQ--LGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHH---------------HHHHHCT-HHHHHHHHHHHHHH---------------HCCT--T--HHHHHHHHHHHHHH
T ss_pred HHHHH---------------HHHHhcCcHHHHHHHHHHHHHH---------------HHHH--cCCHHHHHHHHHHHHHH
Confidence 65553 4567777777777666665331 1111 04666666666664432
Q ss_pred ----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHH
Q 044815 291 ----GWKP--NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN----YKPNVHT-YTAMISGYCKEEKMNRAEMLLERMK 359 (675)
Q Consensus 291 ----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~ 359 (675)
| .+ -..++..+...+.+.|++++|.++|++.....- .+.+... |-..+-++...|++..|...+++..
T Consensus 145 y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 145 YEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11 123455666777788888888888877755321 1112221 2223334455677777777777766
Q ss_pred Hc--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHh
Q 044815 360 EQ--GLLPN--TNTYTSLIYGHCK--VGNFERAYDLMDLMG 394 (675)
Q Consensus 360 ~~--g~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 394 (675)
.. ++..+ ......|+.++-. ...++.|..-|+.+.
T Consensus 224 ~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 224 SQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 43 22212 2334455555532 123444444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.4e-05 Score=57.39 Aligned_cols=80 Identities=23% Similarity=0.220 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-ChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGI-SPCEVTRVTLAYEYCKQGDSATAMIILESLDKKL-WIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
.|+++.|+.+++++.+... .++...+..++.+|.+.|++++|..++++....+ +......++.++.+.|++++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4566666666666666322 1123334446666666666666666666522222 2233334466666777777777766
Q ss_pred HH
Q 044815 633 HK 634 (675)
Q Consensus 633 ~~ 634 (675)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00059 Score=68.55 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ 590 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 590 (675)
.....+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++ +.|+ ...+..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 34566778899999999999999853 23567888889999999999999999999998 4554 56778899999999
Q ss_pred CCHHHHHHHHHHHhh
Q 044815 591 GDSATAMIILESLDK 605 (675)
Q Consensus 591 g~~~~A~~~~~~~~~ 605 (675)
|++++|+..|++...
T Consensus 84 g~~~eA~~~~~~al~ 98 (356)
T PLN03088 84 EEYQTAKAALEKGAS 98 (356)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999766
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=67.25 Aligned_cols=88 Identities=13% Similarity=-0.063 Sum_probs=79.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchh
Q 044815 584 AYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYA 661 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 661 (675)
+.-..+.+++++|+..|.+..+ +.+.+-|..-..+|.+.|.++.|++-.+.++..+|. ...+|..|+.+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 4556788999999999999876 346777888899999999999999999999999998 8899999999999999999
Q ss_pred HHHHHHHHHHh
Q 044815 662 LFSDLSQRIAE 672 (675)
Q Consensus 662 ~A~~~~~~~~~ 672 (675)
+|.+.|+|+++
T Consensus 167 ~A~~aykKaLe 177 (304)
T KOG0553|consen 167 EAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhhhc
Confidence 99999999986
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00036 Score=54.84 Aligned_cols=90 Identities=22% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
+...+...|++++|...++++.+. .|+ ...+..++..+...|++++|.+.++.... +.+...+..++..+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 344444455555555555555442 222 13344455555555555555555555433 1222345555566666666
Q ss_pred HHHHHHHHHHHhcCC
Q 044815 625 VGMAALFFHKLLGKD 639 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~ 639 (675)
+++|...++++++.+
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 666666666665544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00021 Score=68.50 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNI----YAYNAIIDGLCKKGRVQEAYELL 425 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 425 (675)
.-+|+.|+......+|+...+-| .-|. ..|..|.++|.-.+++++|+++-
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 34678888888888888887776 2232 33555566666666777777654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.2e-05 Score=46.40 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCA 539 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 539 (675)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0014 Score=58.53 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=75.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD--NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTL 583 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 583 (675)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...++++++ ..|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 34566667777777888888888887776432222 34666777777788888888888888777 3343 3444556
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 584 AYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+..|...|+...+..-++... ..+++|.+++++++..+|.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCch
Confidence 667777776655554333322 1367788888888887765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.4e-05 Score=46.32 Aligned_cols=32 Identities=38% Similarity=0.590 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044815 334 TYTAMISGYCKEEKMNRAEMLLERMKEQGLLP 365 (675)
Q Consensus 334 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 365 (675)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00065 Score=68.21 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 044815 331 NVHTYTAMISGYCKEEKMNRAEMLLERMKEQ--GLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAI 408 (675)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 408 (675)
+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..+++..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444444444444455555555554433 11111223335555555555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 409 IDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
++.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 555555555555555555554444444444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00067 Score=68.12 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=92.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044815 397 GCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR--ELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHA 474 (675)
Q Consensus 397 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 474 (675)
+.+.+......+++......+++++..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677777788877777888888888877654 2223344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD 520 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 520 (675)
++.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776656666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0099 Score=51.03 Aligned_cols=126 Identities=18% Similarity=0.074 Sum_probs=61.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG---ISPCEVTRV 581 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~ 581 (675)
|++..--.|.....+.|++.+|...|++...--..-|......+.++....+++..|...++.+.+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 45555555555555566666666666555432223344555555555555556666665555555531 1222 333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 582 TLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
.++..|...|+.++|...|+.... -|+...-......+.+.|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 445555555555555555555433 233332222333344555555544433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.001 Score=56.29 Aligned_cols=92 Identities=8% Similarity=-0.100 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 622 (675)
-.+..-+...|++++|..+|+-+.. +.|.. .-+..|+.++...|++++|+..|..... +.++..+-.++.++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3345556677888888888887777 44543 4446677777788888888888877543 45677777778888888
Q ss_pred CCHHHHHHHHHHHhcCC
Q 044815 623 KRVGMAALFFHKLLGKD 639 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~ 639 (675)
|+.+.|++.|+.++...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 88888888887776653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00091 Score=56.80 Aligned_cols=84 Identities=17% Similarity=-0.027 Sum_probs=41.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--hCCChhhHHHHHHHHHccCCHHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLD--KKLWIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
...|++++|..+|+-+.-.+.. +..-+..|+.++...+++++|+..|.... ...++...-..+.++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555555555442211 12223445555555555555555555432 23344444455555555555555555
Q ss_pred HHHHHhc
Q 044815 631 FFHKLLG 637 (675)
Q Consensus 631 ~~~~~~~ 637 (675)
.|+.+++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=60.87 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc-C--CHHHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQ-G--DSATAMI 598 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~-g--~~~~A~~ 598 (675)
.+....-++.-...+ +-|...|..|...|...|+++.|..-|.+..+ +.|+. ..+..++.++... | ...++..
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 333333343333322 33567888888888888888888888888877 44433 3444455554332 2 2456777
Q ss_pred HHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 599 ILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 599 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+|+++.+. .++.+...|...+.+.|++.+|...|+.|++..|.
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 77776553 35666667777777788888888888888777664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0005 Score=66.05 Aligned_cols=282 Identities=13% Similarity=0.075 Sum_probs=166.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH--hh--cCCC-CCHHHHHHHHH
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTN----TYTSLIYGHCKVGNFERAYDLMDLM--GK--EGCT-PNIYAYNAIID 410 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~-~~~~~~~~li~ 410 (675)
.-+|+.|+....+.+|+..++.|.. |.. +|.-|..+|.-.+++++|+++...= .. .|-. -...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4589999999999999999998765 543 4666777888888999999876531 11 1111 12333445666
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 411 GLCKKGRVQEAYELLKKAF----QRELQ-ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 411 ~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
.+--.|.+++|.-...+-+ +.|.+ .....+..+.+.|...|+.-.... -.+.|-.++.+ -
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev-~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEV-T---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHH-H----------
Confidence 6666777888776554432 22211 122234444555554443111000 00001111110 0
Q ss_pred CCHHHHHHHHHHHHH----CC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHhc
Q 044815 486 KKMKESEKFFQEAIT----AG-LFPTKETYTSMICGYLRDGNISSAVKYFQRM----NQIGCAP-DNITYGALISGLCKQ 555 (675)
Q Consensus 486 g~~~~A~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~ 555 (675)
..++.|.++|.+-++ .| --.....|..|.+.|.-.|+++.|+...+.- ++.|-+. ....+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 112334444433221 11 0012345667777777788888888766542 2333221 234677888888889
Q ss_pred CCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------CCChhhHHHHHHHHHcc
Q 044815 556 SKLDEACQFYESMIG----KGIS-PCEVTRVTLAYEYCKQGDSATAMIILESLDK--------KLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 556 g~~~~A~~~~~~~~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~ 622 (675)
|+++.|.+.|+.... .|-+ ......++|+++|.-..++++|+.++.+-.. -.....+-+|+.++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999998887553 2211 2235667888888888889999988877432 12345677788888888
Q ss_pred CCHHHHHHHHHHHhc
Q 044815 623 KRVGMAALFFHKLLG 637 (675)
Q Consensus 623 g~~~~A~~~~~~~~~ 637 (675)
|.-+.|+.+.+..++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888887776554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00096 Score=52.14 Aligned_cols=81 Identities=9% Similarity=0.171 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCCCCChhhHHH
Q 044815 228 LMVVAYCRMGRVTEADRWLSAMLDRGA-ILDNATLTLLITAFCDKGFR-----GSIKQAFELLEEMVRKGWKPNVYTHTV 301 (675)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (675)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.... .++-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666888888888888888888 78888888888887775321 133456667777777777777777777
Q ss_pred HHHHHHh
Q 044815 302 LIDGLCK 308 (675)
Q Consensus 302 l~~~~~~ 308 (675)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=51.42 Aligned_cols=59 Identities=25% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
++..+.+.|++++|.+.|+++.+. .+...|..++.++...|++++|+..|+++++..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455666677777777777766552 24556677777777777777777777777776664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=58.44 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPC--EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKL 619 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 619 (675)
.+..+...+...|++++|...|++.++.+..+. ...+..++..+.+.|++++|...+++... +.+...+..++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 455566666667777777777777665322221 23445556666666666666666655443 12344445555555
Q ss_pred HccCCH
Q 044815 620 CSEKRV 625 (675)
Q Consensus 620 ~~~g~~ 625 (675)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.018 Score=54.23 Aligned_cols=178 Identities=14% Similarity=0.111 Sum_probs=97.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKE--TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK- 554 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 554 (675)
....+...|++++|.+.|+++....+..... ..-.++.+|.+.+++++|...+++..+........-|.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 3444455667777777777666643221111 1123455666677777777777776663211112223333333221
Q ss_pred -cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHH
Q 044815 555 -QS---------------K---LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTL 615 (675)
Q Consensus 555 -~g---------------~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 615 (675)
.+ + ..+|...|+++++. -|+. .-..+|...+..+...--.. --.+
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~la~~-e~~i 181 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRLAKY-ELSV 181 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 10 1 23455556666552 2332 11233333333332211111 1246
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQN--VDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
++-|.+.|++..|+.-++.+++.-|. .....+..++.+|...|..++|.++...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 66788889999999989988887654 234567788888999999999988876553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=58.97 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhC--C---ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKK--L---WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..++..+...|++++|...|++.... . ...+|..++..+...|++++|+..+++++...+. ...++..++.++.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 33444444444444444444443221 1 1224555555666666666666666666665554 4455555555555
Q ss_pred -------hcCchhHHHHHHHH
Q 044815 656 -------ESNKYALFSDLSQR 669 (675)
Q Consensus 656 -------~~g~~~~A~~~~~~ 669 (675)
..|++++|...+++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHH
Confidence 55565544444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00011 Score=53.68 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 588 CKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 588 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+.|++++|++.|+++.. +.+...+..++.+|.+.|++++|..++++++...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456777777777777544 335566666777777777777777777777776665
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.037 Score=47.63 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 044815 468 LNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG---CAPDNIT 544 (675)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~ 544 (675)
..|+...-..|..++.+.|+..+|...|++...--+--|....-.+.++....+++.+|...++.+.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3566666666777777777777777777777654444566666667777777777777777777766532 1233 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
-..+.+.+...|++.+|+.-|+..+. .-|+..........+.+.|+.++|..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34455667777777777777777776 3344444444455666777666655544433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0027 Score=61.42 Aligned_cols=130 Identities=12% Similarity=-0.032 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG-LCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEY 587 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 587 (675)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...+.. +...++.+.|..+|+..++. +..+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555655556666666666666665422 1122333333333 22244555566666666553 122233444455555
Q ss_pred HHcCCHHHHHHHHHHHhhC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 588 CKQGDSATAMIILESLDKK-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 588 ~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.+.|+.+.|..+|++.... + ....|..++..-.+.|+.+...++.+++.+.-+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 5666666666666665432 1 223566666666666666666666666655543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0064 Score=63.91 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=51.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRV 581 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 581 (675)
+...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.++++.+ +.|...+|+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 4456666666666677888888888887774 46777777777778888888888888888777 555554543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0015 Score=58.08 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAP--DNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554422111 112444455555555555555555555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.037 Score=56.81 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 044815 191 LNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCD 270 (675)
Q Consensus 191 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 270 (675)
+.+-+-.|...|.+++|.++ .-.|+ ...-|..|.......=+++-|.+.|.+...
T Consensus 559 ~~~~m~q~Ieag~f~ea~~i----aclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRd------------------- 613 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQI----ACLGV--TDTDWRELAMEALEALDFETARKAYIRVRD------------------- 613 (1081)
T ss_pred ccccchhhhhccchhhhhcc----cccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhc-------------------
Confidence 33334455666666666553 11222 223344444433344444455544444332
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 271 KGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLK 321 (675)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 321 (675)
-.+-+.+.-++++.++|-.|+... +...++-.|++.+|-++|.+
T Consensus 614 ----l~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 614 ----LRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ----cHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 123344455667777776676643 44566677888888887754
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0018 Score=50.62 Aligned_cols=75 Identities=17% Similarity=0.371 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 374 IYGHCKVGNFERAYDLMDLMGKEGC-TPNIYAYNAIIDGLCKKGR--------VQEAYELLKKAFQRELQADKITYTILL 444 (675)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~li 444 (675)
|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- +-+.+.++++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555665555555 5555566655555544321 223344455555555555555555555
Q ss_pred HHHH
Q 044815 445 SEHL 448 (675)
Q Consensus 445 ~~~~ 448 (675)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 4443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=43.58 Aligned_cols=29 Identities=41% Similarity=0.859 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044815 334 TYTAMISGYCKEEKMNRAEMLLERMKEQG 362 (675)
Q Consensus 334 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g 362 (675)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.079 Score=49.96 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGK--GISPCEVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
+..-|.+.|.+..|..-++.+++. +..........++.+|.+.|..++|.+....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334455566666666666666553 1122223444455555555555555554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0098 Score=62.55 Aligned_cols=65 Identities=11% Similarity=-0.035 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
...+..++......|++++|...++++.. .++...|..++..+...|+.++|.+.|+++...+|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 35555566666667777777777777654 345566777788888888888888888888888776
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00045 Score=50.61 Aligned_cols=63 Identities=21% Similarity=0.047 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccC-CHHHHHHHHHHHhcCCC
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEK-RVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 640 (675)
..+..++..+...|++++|+..|++..+ +.+...|..++.++.+.| ++++|++.++++++.+|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445555555555555555555555433 224445666666666666 56677777766666543
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.2 Score=52.13 Aligned_cols=157 Identities=14% Similarity=0.145 Sum_probs=80.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCAR-GVCADASSYKLMVVAYCRMGRVTEADR 244 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 244 (675)
-|++++|.+++-+|.++.. -+..+.+.|++-.+.++++.--.. .-..-..+|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666655431 233444555555555544321100 000113456666666666666666666
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 245 WLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 245 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.|..-... ...+..+.+. ..+++-..+-. ..+.+....-.+.+++.+.|..++|.+.|.+.-
T Consensus 818 yY~~~~~~---------e~~~ecly~l---e~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s- 879 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRL---ELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS- 879 (1189)
T ss_pred HHHhccch---------HhHHHHHHHH---HhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-
Confidence 66543211 1123333332 22222222221 123456666777888888888888887775431
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 325 SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERM 358 (675)
Q Consensus 325 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 358 (675)
.|. ..+..|...++|.+|.++-+..
T Consensus 880 ----~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 880 ----LPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ----CcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 122 2345666677777777765543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00018 Score=42.81 Aligned_cols=26 Identities=35% Similarity=0.738 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 510 YTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.14 Score=49.61 Aligned_cols=218 Identities=19% Similarity=0.208 Sum_probs=119.7
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH---HhcCC
Q 044815 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRE-LQADKIT--YTILLSEH---LKQAE 452 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~li~~~---~~~~~ 452 (675)
+.|+.+.|...-+..-..- +--.......+...|..|+++.|+++++.-.... +.++..- -..|+.+- .-..+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3444444444444433321 1123444455555555555555555555443321 1222211 11111111 11223
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
...|...-.+..+ ..||.. .-..-..++.+.|++.++-.+++.+-+....|+ ++. +..+.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHH
Confidence 4445544444443 344432 223345678888999999999999888754444 332 223345554 3443343
Q ss_pred HHHH-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhCC
Q 044815 532 RMNQ-IGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYC-KQGDSATAMIILESLDKKL 607 (675)
Q Consensus 532 ~m~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 607 (675)
+... ..++|| ......+..+-...|++..|..--+...+ ..|....|..|...-. ..|+-.++...+.+..+.|
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 3322 124554 55666777788888999998888888777 6787777777777654 4599999999888876643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00052 Score=50.99 Aligned_cols=57 Identities=19% Similarity=-0.005 Sum_probs=35.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 585 YEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
..|.+.+++++|.+.++++.. +.+...|...+..+.+.|++++|.+.++++++.+|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 456666666666666666544 334555666666666666666666666666666664
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.003 Score=61.17 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 044815 225 SYKLMVVAYCRMGRVTEADRWLSAMLDRGA-ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLI 303 (675)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (675)
+|..++...-+.+..+.|..+|.+..+.+. ..+.....+++.-.+. ++.+.|.++|+...+. +..+...+...+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~----~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN----KDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC----S-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 455555655566666666666666654321 2223333333332222 3555566666665554 333555566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044815 304 DGLCKKGWTEKAFRLFLKLVRSDNYKP-NVHTYTAMISGYCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 360 (675)
+.+.+.|+.+.|..+|++.+..-.... ....|...+..=.+.|+++.+.++.+++.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666654321111 123555555555556666666666655555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0042 Score=55.20 Aligned_cols=102 Identities=24% Similarity=0.337 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHH-----hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHH
Q 044815 187 ITSTLNRVVGIAC-----ELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATL 261 (675)
Q Consensus 187 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 261 (675)
+..+|..++..|. +.|.++-....+..|.+.|+..|..+|+.|++.+=+ |++- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 3444444444443 345666677777778888888888888888777654 2211 01111111
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 044815 262 TLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKG 310 (675)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 310 (675)
..-| ..+.+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 112 ---F~hy-----p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 ---FMHY-----PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---hccC-----cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1111 1234555566666666666666666666666665444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00064 Score=49.65 Aligned_cols=51 Identities=37% Similarity=0.435 Sum_probs=30.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 553 CKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+.|++++|+++|+++.+. .| +......++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666666666652 33 334555566666666666666666666554
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0039 Score=59.14 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C----ChhhHH
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISPCE----VTRVTLAYEYCKQGDSATAMIILESLDKK-L----WIRTVN 613 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~ 613 (675)
..|...+..+.+.|++++|...|+.+++. .|+. ..++.++..|...|++++|...|+.+.+. | ....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445678888888888888873 3432 46677888888888888888888887652 2 234455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.++..+.+.|+.++|..+|+++++..|+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5677777888889999888888888876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.022 Score=58.27 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHH---------HHHHhcCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLF---------LKLVRSDNYKPNVHTYTAMISGYCKEEK--MNRAEMLLERMKEQGLL 364 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~ 364 (675)
...+.+-+--|...|.+++|.++- +.+..+ ..+...++..-.+|.+..+ +-+.+.-+++|++.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 344555556677888888876551 111110 1223334455556665444 34455556778888887
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 365 PNTNTYTSLIYGHCKVGNFERAYDLMDLM 393 (675)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (675)
|+.... ...++-.|++.+|.++|.+-
T Consensus 633 P~~iLl---A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 633 PNDLLL---ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred chHHHH---HHHHHhhhhHHHHHHHHHHc
Confidence 887543 44556678888888888654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0004 Score=52.40 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhcC----CCC-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLGK----DQN-VD-RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+++.++..|...|++++|+.+|+++++. |.. |+ ..++..++.++...|++++|.++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677777777888888888888777643 222 12 45788889999999999999999988875
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.052 Score=49.79 Aligned_cols=168 Identities=18% Similarity=0.233 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH-
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLF--PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN--ITYGALISGLC- 553 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~- 553 (675)
...+...|++++|.+.|+.+...... -.....-.++.++.+.|++++|...++++++. -|+. ..+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 34445556666666666666654211 11233445556666666666666666666553 2221 11221222211
Q ss_pred ------------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc
Q 044815 554 ------------KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCS 621 (675)
Q Consensus 554 ------------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (675)
..+...+|...|+.+++. -| ...-..+|...+..+...-.. .--.++..|.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP-------------~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y~~ 153 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR--YP-------------NSEYAEEAKKRLAELRNRLAE-HELYIARFYYK 153 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH---T-------------TSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH--Cc-------------CchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 112233445555555442 12 223334444444443321111 11236677888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCchhHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVD--RVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~ 664 (675)
.|++..|..-++.+++.-|+.. ...+..++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999988877522 235677888888888887443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.013 Score=47.89 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=24.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCE--VTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
++-..|+.++|+.+|++.++.|+.... ..+..++..|...|+.++|..++++.
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445555555555555554443321 23333444455555555555555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0096 Score=52.97 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC
Q 044815 221 ADASSYKLMVVAYCRM-----GRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN 295 (675)
Q Consensus 221 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (675)
.+-.+|..+|..|.+. |.++=....+..|.+.|+.-|..+|+.||..+=+. .+. -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg----~fv-p~n~fQ~~F------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG----KFV-PRNFFQAEF------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC----Ccc-cccHHHHHh-------
Confidence 4666666666666543 44555555666666666666666666666665431 111 001111110
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKM-NRAEMLLERMK 359 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~ 359 (675)
. - .-.+.+-|++++++| +..|+.||..++..+++.+++.+.. .+..++.-.|.
T Consensus 113 -------~-h--yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 -------M-H--YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred -------c-c--CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 0 0 123456789999998 5689999999999999999876652 33334444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0082 Score=56.99 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=77.8
Q ss_pred CHHHHHHHHHH-HHHcCCHHHHHHHHHHHhhC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC--CCHHHH
Q 044815 576 CEVTRVTLAYE-YCKQGDSATAMIILESLDKK-LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN--VDRVSL 647 (675)
Q Consensus 576 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~ 647 (675)
+....+..+.. +.+.|++++|...|+.+.+. |+ ...+..++..|...|++++|...|+++++..|. .....+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 33444444444 46789999999999998763 33 357788999999999999999999999987664 135567
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 648 AALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 648 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..++.++...|++++|.++++++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77889999999999999999998763
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.2 Score=53.56 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHH---------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 044815 137 IVCATSLISNGNFERAHEVMQC---------MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYA 207 (675)
Q Consensus 137 ~~~~~~l~~~~~~~~a~~~~~~---------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 207 (675)
-.-+.-|.+.|+|++|...|-. +|+-|....+..+-..+++.+.+.|+ .+..--..|+.+|.+.++.++-
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHH
Confidence 3446667788999998877764 46677777788888888888888885 3445556788899999998887
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044815 208 EEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEM 287 (675)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 287 (675)
.+..+... .|.. ..-....+..+.+.+-.++|..+-.+... +......++... +++++|++.+..+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille~~------~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLEDL------HNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHHHh------cCHHHHHHHHhcC
Confidence 77766554 3221 11234566777777777777766655433 445555555543 7788888887765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.33 Score=48.07 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 044815 508 ETYTSMICGYLRDGNISSAVKYFQRMNQIG-CAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAY 585 (675)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~ 585 (675)
.+|..+++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|++..|-.+|+--+. .-||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 456667777777778889999999998887 5678888888887665 5788889999987666 33555555 45666
Q ss_pred HHHHcCCHHHHHHHHHH----HhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 586 EYCKQGDSATAMIILES----LDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
-+...++-+.|..+|+. +.+..-...|..++..-..-|+...+..+=+++.+.-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 77788999999999984 333334567888998888899998888888888777665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0021 Score=64.01 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC-h---hhHHHHHHHHHccCCHHHHHHHHHHHhcCC
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDK-KLW-I---RTVNTLIRKLCSEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (675)
+...++.++.+|.+.|++++|+..|++... .|+ . .+|..++.+|.+.|+.++|+..++++++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 346778888899999999999999988544 343 3 348888999999999999999999988863
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.35 Score=48.06 Aligned_cols=142 Identities=10% Similarity=0.128 Sum_probs=78.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 044815 197 IACELGLVEYAEEVFDEMCARGVCADASS------YKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCD 270 (675)
Q Consensus 197 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 270 (675)
.+-+++++.+|+++|.++.+.. ..++.. -+.++++|.. ++.+.....+..+.+.- | ...|-.+..++..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3457888999999998887642 223222 2345556653 45555555555555432 2 2333333333222
Q ss_pred cCCCCCHHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCCHH
Q 044815 271 KGFRGSIKQAFELLEEMVRK--GWKP------------NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS---DNYKPNVH 333 (675)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 333 (675)
.. .+.+..|.+.+...... +.+| |...-+..+..+...|++.++..++.++... ..+.-+..
T Consensus 90 Y~-~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YK-QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HH-hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 11 16788888777766554 3222 1112244566777788888888877777543 12234667
Q ss_pred HHHHHHHHHHh
Q 044815 334 TYTAMISGYCK 344 (675)
Q Consensus 334 ~~~~li~~~~~ 344 (675)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 77765555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.04 Score=45.05 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=73.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHH
Q 044815 160 VSSFAEIGRLKEGFSMVIEMTNNGLPLI--TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD----ASSYKLMVVAY 233 (675)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~ 233 (675)
...+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.+|++..... |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3456678889999999999988886544 3466778888999999999999999887652 33 22233344577
Q ss_pred HHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 044815 234 CRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFC 269 (675)
Q Consensus 234 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 269 (675)
...|+.++|++++-..... +...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 8889999999888776542 3335555555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.33 Score=47.61 Aligned_cols=300 Identities=14% Similarity=0.135 Sum_probs=159.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 298 THTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGH 377 (675)
Q Consensus 298 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 377 (675)
.|..+...-...|+.+-|..+++. .|+.. .-+..+.+.|+.+.| +.+..+.|- ||. +|..|+..-
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~-------Ep~~~---~qVplLL~m~e~e~A---L~kAi~SgD-~DL-i~~vLl~L~ 66 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL-------EPRAS---KQVPLLLKMGEDELA---LNKAIESGD-TDL-IYLVLLHLK 66 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc-------CCChH---HHHHHHhcCCchHHH---HHHHHHcCC-ccH-HHHHHHHHH
Confidence 466777778889999998877632 24432 224555667777766 556666543 243 455555433
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 378 CKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 457 (675)
-+.. .. +++.-+.. .|.. ..+...|++..+.+.-..+|.+-- .........+-.++.. .+.++-.
T Consensus 67 ~~l~-~s---~f~~il~~---~p~a---~~l~~~~~r~~~~~~L~~~y~q~d----~~~~~a~~~l~~~~~~-~~~~~~~ 131 (319)
T PF04840_consen 67 RKLS-LS---QFFKILNQ---NPVA---SNLYKKYCREQDRELLKDFYYQED----RFQELANLHLQEALSQ-KDVEEKI 131 (319)
T ss_pred HhCC-HH---HHHHHHHh---Ccch---HHHHHHHHHhccHHHHHHHHHhcc----hHHHHHHHHHHHHHhC-CChHHHH
Confidence 3222 11 23333322 2332 345566777677666555554311 1111122222222222 4444444
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 458 GLFCRMVKA-GLNPDIHAYTTLIAAFCRQKKMKESEKFFQ---EAITA-GLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 458 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
..+....+. +-..+......+ .++..++++ ++.+. +......+.+..|.-+...|+...|.++-.+
T Consensus 132 ~~L~~a~~~y~~~k~~~f~~~~---------~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~ 202 (319)
T PF04840_consen 132 SFLKQAQKLYSKSKNDAFEAKL---------IEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKE 202 (319)
T ss_pred HHHHHHHHHHHhcchhHHHHHH---------HHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444333321 000111111111 111222221 11111 1111223455556667778888888877666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhH
Q 044815 533 MNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTV 612 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 612 (675)
.. .||..-|-..+.+++..++|++-..+... .-. +.-|.-++.++.+.|+..+|..++.++. +
T Consensus 203 Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~~~~~~~eA~~yI~k~~-------~ 265 (319)
T PF04840_consen 203 FK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACLKYGNKKEASKYIPKIP-------D 265 (319)
T ss_pred cC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHHHCCCHHHHHHHHHhCC-------h
Confidence 53 47888888888888888888876665332 122 2456667778888888888888888743 2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
..-+..|.+.|++.+|.+..-+. + |...+..+...+...++
T Consensus 266 ~~rv~~y~~~~~~~~A~~~A~~~-----k-d~~~L~~i~~~~~~~~~ 306 (319)
T PF04840_consen 266 EERVEMYLKCGDYKEAAQEAFKE-----K-DIDLLKQILKRCPGNND 306 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc-----C-CHHHHHHHHHHCCCCCh
Confidence 45677788888888887765442 1 55555555544444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.053 Score=49.45 Aligned_cols=163 Identities=11% Similarity=0.029 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
.+.-.+.|++-. ..+.+.++..+.-.|.+.-...++.+.++..-+-++.....+++.-.+.|+.+.|...|++
T Consensus 165 ~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 355555554432 2445566777777888888899999998865555777888888888999999999999997
Q ss_pred HHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 568 MIGK-----GISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKL--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 568 ~~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
..+. |+.-+..........|.-.+++.+|...+.++...+ ++...|.-+-++.-.|+...|++..+.|++..|
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7642 333333444455666777888899999998887654 455566666666678999999999999999988
Q ss_pred CCCHHH-----HHHHHHHHHhc
Q 044815 641 NVDRVS-----LAALKNACYES 657 (675)
Q Consensus 641 ~p~~~~-----~~~l~~~~~~~ 657 (675)
.|...- +.++...++..
T Consensus 318 ~~~l~es~~~nL~tmyEL~Ys~ 339 (366)
T KOG2796|consen 318 RHYLHESVLFNLTTMYELEYSR 339 (366)
T ss_pred ccchhhhHHHHHHHHHHHHhhh
Confidence 754332 44555555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.32 Score=45.59 Aligned_cols=222 Identities=19% Similarity=0.131 Sum_probs=129.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 415 KGRVQEAYELLKKAFQRELQA-DKITYTILLSEHLKQAETKQALGLFCRMVKA-GLNPDIHAYTTLIAAFCRQKKMKESE 492 (675)
Q Consensus 415 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (675)
.+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355566666666655543221 3456666667777777777777777666542 22344555666666666677777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 493 KFFQEAITAGLFPTKETYTSMIC-GYLRDGNISSAVKYFQRMNQIGCAP----DNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
+.+.........+ ......... .+...|+++.|...+.+... ..| ....+......+...++.+++...+.+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7777776643322 122222222 56677777777777777654 222 223333344445566777777777777
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC-hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 568 MIGKGISPC--EVTRVTLAYEYCKQGDSATAMIILESLDKK-LW-IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 568 ~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+. .++ ...+..+...+...++.+.|...+...... +. ...+..+...+...|..+++...+.+.+...+.
T Consensus 193 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 193 ALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7663 222 345566666677777777777777665543 22 334444444444555677777777776666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.1 Score=47.76 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 044815 549 ISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
..-|.+.|.+..|..-++.+++
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3345555555555555555554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.79 Score=49.28 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHH--HHHHH-HHhcCCHHHHHHHHHHHhh-------cCCCCCHHHHHHHHHHHHhcC-
Q 044815 348 MNRAEMLLERMKEQGLLPNTNTYT--SLIYG-HCKVGNFERAYDLMDLMGK-------EGCTPNIYAYNAIIDGLCKKG- 416 (675)
Q Consensus 348 ~~~A~~~~~~m~~~g~~p~~~~~~--~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 416 (675)
..+|.+.++...+.|.. ...... ....+ +....+.+.|+.+++.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45677777777665432 111111 11122 3345677777777777665 33 2223444555555432
Q ss_pred ----CHHHHHHHHHHHHhCC
Q 044815 417 ----RVQEAYELLKKAFQRE 432 (675)
Q Consensus 417 ----~~~~A~~~~~~~~~~~ 432 (675)
+.+.|..++.+..+.|
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred CccccHHHHHHHHHHHHhcC
Confidence 3344555555554443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0055 Score=45.36 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.|.+.+++++|.+++++++..+|. +...+...+.++.+.|++++|.+.++++++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455566666666666666666665 555666666666666666666666666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.024 Score=55.35 Aligned_cols=93 Identities=12% Similarity=-0.008 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQI-----GCAPD---------NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
.-.+.|.+.|++..|...|++.... +..+. ..++..+..++.+.+++.+|++..++.++.+. +|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cch
Confidence 3456677778888888777776542 11110 01244444555555555555555555555221 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
...+.-+.+|...|+++.|+..|+++.+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555555444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.067 Score=50.33 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhH
Q 044815 220 CADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTH 299 (675)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 299 (675)
+-|...|-.|...|...|+++.|..-|.+..+... ++...+..+-.++........-.++..+|+++.+.... |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 55888899999999999999999988888877532 35566666666665554445667788888888876433 66777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 300 TVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMIS 340 (675)
Q Consensus 300 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 340 (675)
..|...+...|++.+|...|+.|++.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l---p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL---PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC---CCCCchHHHHH
Confidence 777888888899999999888887643 33334444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.11 Score=47.04 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=101.9
Q ss_pred CChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 044815 147 GNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSY 226 (675)
Q Consensus 147 ~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 226 (675)
.+|+.|...|.....+|....+++.|...+.+..+. ...+...|. ....++.|.-+.+++.+. +--+..|
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~ 94 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLY 94 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 355556666666666666666777666666655421 122222222 122344455555555443 1123334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---C--CCCChhhHHH
Q 044815 227 KLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK---G--WKPNVYTHTV 301 (675)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ 301 (675)
+-....|...|..+.|-..+++.-+. .. ..+.++|++++.+.... + ...-...+..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~----------------le---nv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA----------------LE---NVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH----------------hh---cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 55556777777777776666654332 00 03455555555543221 1 0111234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHH
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVR----SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQG---LLPNTNTYTSLI 374 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~li 374 (675)
+.+.+.+..++++|-..|.+... -.....--..|-..|-.+.-..++..|.+.++.--+.+ -.-+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 56667777777777655544211 00000011123333334444556666666666643322 112344555666
Q ss_pred HHHHhcCCHHHHHHH
Q 044815 375 YGHCKVGNFERAYDL 389 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~ 389 (675)
.+| ..|+.+++.++
T Consensus 236 ~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKV 249 (308)
T ss_pred HHh-ccCCHHHHHHH
Confidence 555 34555555444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0034 Score=40.87 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
.+|..++..|.+.|++++|+++|+++++..|+ |...+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 35778889999999999999999999999998 8888877764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.26 Score=48.85 Aligned_cols=28 Identities=14% Similarity=-0.033 Sum_probs=20.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.+++.+..-.|+.++|.+.+++|....+
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 5666666777777777777777776654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0064 Score=45.72 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=17.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
++..++.++...|++++|+++++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666666666666666543
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0018 Score=39.23 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 044815 631 FFHKLLGKDQNVDRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
+|+++++.+|+ |...|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPN-NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788999999 99999999999999999999863
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.65 Score=46.13 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
|-..+.+++.++.-.|++++|.+.+++|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 344555666666666666666666666665
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.068 Score=46.02 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
..++..+...|++++|...+++++..+|- |...|..++.+|...|+..+|.+.++++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444455555555555555555555555 55555555555555555555555555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.72 Score=44.47 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHH--
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITAG-----LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ----IGCAPDNITY-- 545 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~-- 545 (675)
++..++...+.++++.+.|+.+.+.. ......++-.|...|.+..++++|.-+..+..+ .++..-..-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35555566666777777776665421 112345667777777777777777766655433 1211111122
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 546 ---GALISGLCKQSKLDEACQFYESMIG----KGISPCE-VTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 546 ---~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
-.+.-++...|+...|.+..++..+ .|-.+.. .....+++.|...|+.|.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2244466777887777777777654 3433322 23345777888888888888777764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.26 Score=42.25 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=54.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 480 AAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLD 559 (675)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 559 (675)
.-+...|++++|..+|.-+.-.++ .+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 334566777777777776665543 345556666666666677777777776654432 123333444556666777777
Q ss_pred HHHHHHHHHHh
Q 044815 560 EACQFYESMIG 570 (675)
Q Consensus 560 ~A~~~~~~~~~ 570 (675)
.|+..|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776666
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.02 Score=55.91 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCC
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGK-----GISP---------CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLW 608 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 608 (675)
...-.+.|.+.|++..|..-|++++.. +..+ -...+..|+.+|.+.+++.+|++..+++.. +++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 334566789999999999999997642 2222 113456788889999999999999988765 457
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhH-HHHHHHHHHhcc
Q 044815 609 IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYAL-FSDLSQRIAEGI 674 (675)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 674 (675)
.....--+.+|...|.++.|+..|+++++..|. |...-..|+..--+..++.+ ..++|..+..++
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777888889999999999999999999999998 87777777766655555444 477888877665
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.47 Score=45.68 Aligned_cols=163 Identities=14% Similarity=0.047 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHH
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITA-GLFP---TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCA-PD----NITY 545 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~ 545 (675)
|..+..++-+..++.+++.+-..-... |..| .-....++..++.-.+.++++++.|+...+.... .| ...|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444444444444333322 2222 1123345667777788899999999887653211 12 2478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCChhh-
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGK----GISPCE-----VTRVTLAYEYCKQGDSATAMIILESLDK----KLWIRT- 611 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~- 611 (675)
..|...|.+..++++|.-+..++.+. ++..-. ...+.+.-+|...|.+.+|.+..++..+ .+|..+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 88999999999999999888776642 322111 2334566788899999999998888654 345444
Q ss_pred ---HHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 612 ---VNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 612 ---~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
...+++.|...|+.|.|..-|+++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 46788999999999999999987654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=2 Score=45.76 Aligned_cols=112 Identities=9% Similarity=-0.052 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHcc
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (675)
.+.+--+.-+...|+..+|.++-.+.. -||...+..-+.++...+++++-.++-+.. ..+.-|.-++.+|.+.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk---ksPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK---KSPIGYLPFVEACLKQ 757 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---CCCCCchhHHHHHHhc
Confidence 344445556667888899888877663 367777777788899999998765554443 3366788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 623 KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
|+.+||.+++-++-.. . -...+|.+.|++.+|.+..-+-
T Consensus 758 ~n~~EA~KYiprv~~l-------~--ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGL-------Q--EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred ccHHHHhhhhhccCCh-------H--HHHHHHHHhccHHHHHHHHHHh
Confidence 9999999998764221 1 4667888999999988876543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.2 Score=43.18 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=90.3
Q ss_pred cChhHHHHHHHHhhhCC-CC-----cchhhhHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044815 111 AGSMVALSFFYWAIGFA-KF-----RHFMRLYIVCATSLISNG-NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNG 183 (675)
Q Consensus 111 ~~~~~al~~f~~~~~~~-~~-----~~~~~~y~~~~~~l~~~~-~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 183 (675)
++.+.|-.+|..+.... .. ....+.+..+|..+.+.+ +++.|...++...+.+-..+ .+...+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~----------~~~~~~ 76 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG----------KMDKLS 76 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh----------hccccC
Confidence 45556666666654322 11 112334455666666666 77777666554433322211 111221
Q ss_pred CC---CCHHHHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCC
Q 044815 184 LP---LITSTLNRVVGIACELGLVE---YAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILD 257 (675)
Q Consensus 184 ~~---~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 257 (675)
.. .-..++..++.+|...+..+ +|.++++.+... ++-.+..+-.-+..+.+.++.+++.+.+.+|...- ...
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~ 154 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHS 154 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccc
Confidence 11 11246777788888877654 556666666443 22235556666777777889999999999998762 212
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC
Q 044815 258 NATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN 295 (675)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (675)
...+...+..+..... .....+...++.+....+.|.
T Consensus 155 e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred cchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 3334444433322110 234455555555554434333
|
It is also involved in sporulation []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.9 Score=41.81 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----H
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGAL-----I 549 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-----~ 549 (675)
-+.++..+.-.|.+.-....+.+.++...+.++.....|+..-.+.|+.+.|...|++..+..-..|..+.+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 45566666777888889999999999876778888899999999999999999999987764334444444433 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
..+.-++++..|...+.+..+.+-. |....+.-+.+..-.|+..+|++.++.+...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456678899999999998874322 3444455555556679999999999998764
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.2 Score=45.05 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=79.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP---DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE--VT 579 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~ 579 (675)
....+|..++..+.+.|+++.|...+.++...+... +......-+..+-..|+..+|...++..++..+..+. ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345577778888888888888888888877643111 2333444555667778888888888887763222110 00
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHHHhhCCChhhHHHHHHHHHcc------CCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 580 RVTLAYEYCKQGDSATAMII-LESLDKKLWIRTVNTLIRKLCSE------KRVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
...+...+.. ..+..... ............+..++.-.... +..+++...|+++.+..+. ....|..++.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWAL 300 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence 0111100000 00000000 00000000011223333333333 7788888888888888877 6667777777
Q ss_pred HHHhc
Q 044815 653 ACYES 657 (675)
Q Consensus 653 ~~~~~ 657 (675)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 66543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.087 Score=48.95 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-----CChhhHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISP--CEVTRVTLAYEYCKQGDSATAMIILESLDKK-----LWIRTVNTLI 616 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~ 616 (675)
.|+.-+. +.+.|++.+|...|...++....- ....++.|+.++...|++++|..+|..+.+. .-+..+--|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5665554 446777888888888888753221 2356777888888888888888888887652 1345667777
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
....+.|+.++|...|+++++.-|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 7888888888888888888888776
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=2.3 Score=45.76 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=50.7
Q ss_pred HhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 044815 343 CKEEKMNRAEMLLERMKE-------QGLLPNTNTYTSLIYGHCKVG-----NFERAYDLMDLMGKEGCTPNIYAYNAIID 410 (675)
Q Consensus 343 ~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 410 (675)
....+.+.|+..|+.+.+ .| .......+..+|.+.. +.+.|..++....+.| .|+.... +..
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~ 333 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYL--LGV 333 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHH--HHH
Confidence 345566666666666554 44 2234455566665532 6788999999988887 3444433 333
Q ss_pred HHHh---cCCHHHHHHHHHHHHhCCC
Q 044815 411 GLCK---KGRVQEAYELLKKAFQREL 433 (675)
Q Consensus 411 ~~~~---~g~~~~A~~~~~~~~~~~~ 433 (675)
.+.. ..+...|.++|....+.|.
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCC
Confidence 3332 2356778888877776653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.084 Score=49.06 Aligned_cols=94 Identities=17% Similarity=0.055 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDKK-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV--DRVSLAALKN 652 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 652 (675)
.+..+..+.+.|++.+|...|....+. | ....+..|+..+...|++++|...|..+.+.-|+- -+..+..|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 566677788999999999999997764 2 24467789999999999999999999998876531 3578999999
Q ss_pred HHHhcCchhHHHHHHHHHHhc
Q 044815 653 ACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 653 ~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+..+.|+.++|...|+++.++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999998764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.43 Score=48.14 Aligned_cols=145 Identities=8% Similarity=-0.009 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HhHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044815 487 KMKESEKFFQEAITA-GLFPT-KETYTSMICGYLR---------DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ 555 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 555 (675)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++..+.+ .-|......+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788888888822 23343 4556665555432 223456777777777754 44677777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC---hhhHHHHHHHHHccCCHHHHHH
Q 044815 556 SKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KLW---IRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 556 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
++++.|...|++... +.||. .+++..+....-.|+.++|.+.+++... .|. .......++.|+.. ..++|+.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 889999999999888 66764 5666777778888999999998888444 332 22334444455544 5777887
Q ss_pred HHHHH
Q 044815 631 FFHKL 635 (675)
Q Consensus 631 ~~~~~ 635 (675)
+|-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 77653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.1 Score=41.72 Aligned_cols=222 Identities=19% Similarity=0.140 Sum_probs=137.1
Q ss_pred cCCHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 380 VGNFERAYDLMDLMGKEGCT-PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR-ELQADKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~ 457 (675)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666665554321 12566667777777778888887777776642 23445556666666777777777888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 458 GLFCRMVKAGLNPDIHAYTTLIA-AFCRQKKMKESEKFFQEAITAGL--FPTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 458 ~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+++...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777777654332 122222222 67777888888888887755221 1233344444444566777888888888777
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 535 QIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 535 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
... .. ....+..+...+...++++.|...+....+ ..|+ ...+..+...+...|..+++...+.+...
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 642 22 255666677777777778888888887776 3333 33444455555566667777777776655
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.5 Score=43.12 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 372 SLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
..|.-+...|+...|.++-.+.. -|+-..|...+.+++..+++++-.++-.. ...+..|..++..|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 33444455666666665554442 35666666666777776766665554321 223456666666666677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKF 494 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (675)
+..+|..++.++ + +..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 766666665551 1 13445566666666666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.1 Score=41.42 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 044815 257 DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGW--KPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHT 334 (675)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 334 (675)
-...|+..+..+.+ |++++|.+.|+.+....+ +-...+.-.++-++.+.+++++|+..+++.++..+-.||. .
T Consensus 34 ~~~LY~~g~~~L~~----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-d 108 (254)
T COG4105 34 ASELYNEGLTELQK----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-D 108 (254)
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-h
Confidence 33445555555444 678888888888776521 1124455666777788888888888888888776655554 3
Q ss_pred HHHHHHHHH
Q 044815 335 YTAMISGYC 343 (675)
Q Consensus 335 ~~~li~~~~ 343 (675)
|-..|.+++
T Consensus 109 Y~~YlkgLs 117 (254)
T COG4105 109 YAYYLKGLS 117 (254)
T ss_pred HHHHHHHHH
Confidence 444444444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.13 Score=44.28 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHH
Q 044815 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCA-----RGVCADASS 225 (675)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 225 (675)
.+..++..+...|++++|......+.... |.+...+..++.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33445555666666666666666666654 45566666666666666666666666666532 355555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.14 Score=51.43 Aligned_cols=148 Identities=9% Similarity=0.009 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044815 522 NISSAVKYFQRMNQ-IGCAPD-NITYGALISGLCK---------QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQ 590 (675)
Q Consensus 522 ~~~~A~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 590 (675)
..+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.+.-++.++.+- -|......++.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 35788999999882 235676 4456555554321 2345677888888888442 2567777888888889
Q ss_pred CCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHHhcCchhHHHHHH
Q 044815 591 GDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAA-LKNACYESNKYALFSDLS 667 (675)
Q Consensus 591 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~ 667 (675)
|+.+.|...|++... +....+|...+..+.-.|+.++|.+.++++++..|.--...... .++.|+.. ..++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 999999999999765 45677888888888999999999999999999988633333333 33355554 567888877
Q ss_pred HHHH
Q 044815 668 QRIA 671 (675)
Q Consensus 668 ~~~~ 671 (675)
-|-.
T Consensus 431 ~~~~ 434 (458)
T PRK11906 431 YKET 434 (458)
T ss_pred hhcc
Confidence 6543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.31 Score=51.07 Aligned_cols=174 Identities=18% Similarity=0.167 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hHHHHHHHHHHH----cCCHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK------ETYTSMICGYLR----DGNISS 525 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~ 525 (675)
...+|.-+... +|| .+..++....-.|+-+.+.+.+.+..+.+-.-.+ -.|...+..++. ..+.+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555543 344 3456667777779999999999887764311121 123344444432 446778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhC--CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 526 AVKYFQRMNQIGCAPDNITYGAL-ISGLCKQSKLDEACQFYESMIGK--GIS-PCEVTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~--g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
|.++++.+.+. -|+...|... .+.+...|++++|++.|+++.+. ..+ .....+..+++.+.-.+++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 88888888874 5776665543 34466788999999999977642 111 123555678888888888888888888
Q ss_pred HHhhC-CChhhHHHHHHH--HHccCCH-------HHHHHHHHHH
Q 044815 602 SLDKK-LWIRTVNTLIRK--LCSEKRV-------GMAALFFHKL 635 (675)
Q Consensus 602 ~~~~~-~~~~~~~~l~~~--~~~~g~~-------~~A~~~~~~~ 635 (675)
.+.+. .+..++...+.+ +...|+. ++|.++++++
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 88764 444443333333 4457777 6666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.35 Score=42.41 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAPDNITY--GALISGLCKQSKLDEACQFYESMIGKGISPC--EVTRVTLAYEYCKQGDSATAMIIL 600 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 600 (675)
+.....+++....-+.....+ ..+...+...|++++|..-++..+..-..-+ ...-..|+......|.+|+|++.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455555666553211111122 2345567889999999999998875321111 122234677788899999999999
Q ss_pred HHHhhCCChhhH-HHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 601 ESLDKKLWIRTV-NTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 601 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+....+.+...+ ..-++++...|+-++|+.-|+++++.+..
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 988877655544 45577889999999999999999988744
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.3 Score=44.21 Aligned_cols=133 Identities=9% Similarity=0.055 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADAS-SYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
+...+..|+.---.....+.+..+++.+... -|-.. -|.....-=.+.|..+.+.++|++-+. |+......|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3344544444333333445566666666543 23222 233333344556777777777777665 3444555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 266 TAFCDKGFRGSIKQAFELLEEMVRK-GWK-PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.-++.. .|+.+.....|+..... |.. .....|...|..-..+++......+++++++
T Consensus 121 ~f~~n~--~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 121 AFLKNN--NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhcc--CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 555443 36666666666665543 211 1334455566655666666676677666654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.91 Score=38.96 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=52.5
Q ss_pred HHHcCCHHHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 044815 233 YCRMGRVTEADRWLSAMLDRGAILDNA-TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGW 311 (675)
Q Consensus 233 ~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 311 (675)
....|+...|...|++.-.....|-.. -...|=.+|.-. +.|.+++.....+-+...+-+-....-..|.-+-.+.|+
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv-D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV-DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh-ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 344555555555555554443333332 111222222221 136677666666665554444445555667777778888
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 044815 312 TEKAFRLFLKLVRSDNYK 329 (675)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~ 329 (675)
+.+|.+.|..+....+-+
T Consensus 183 ~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 183 FAKAKSWFVQIANDAQAP 200 (221)
T ss_pred hHHHHHHHHHHHccccCc
Confidence 888888888876644433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=3.1 Score=44.98 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhc
Q 044815 197 IACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDK 271 (675)
Q Consensus 197 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 271 (675)
-+.+.|++++|...|-+-+.. +.| ..+|.-|....+..+-..+++.+.+.|.. +...-..|+..|.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKl 444 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKL 444 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHh
Confidence 334455555555554443321 111 12333344444444455555555555443 333344455555554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.15 Score=42.57 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=25.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDKKL-----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
-+....+.|++++|.+.|+.+..+- ...+-..++.+|.+.|++++|...+++.+++.|
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3334444444444444444444321 111223344445555555555555555555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.89 E-value=2.1 Score=42.65 Aligned_cols=82 Identities=7% Similarity=0.069 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044815 153 HEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA 232 (675)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 232 (675)
.-.|-++|+-|...|.+++..+++++|..- .|.-..+|...+..=....++..++.+|.+..... .+...|...+.-
T Consensus 42 I~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~Y 118 (660)
T COG5107 42 ILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEY 118 (660)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHH
Confidence 345567899999999999999999999764 34556778887877777889999999999988763 467778877775
Q ss_pred HHHcC
Q 044815 233 YCRMG 237 (675)
Q Consensus 233 ~~~~g 237 (675)
..+.+
T Consensus 119 IRr~n 123 (660)
T COG5107 119 IRRVN 123 (660)
T ss_pred HHhhC
Confidence 54433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.5 Score=41.49 Aligned_cols=127 Identities=10% Similarity=-0.001 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhh-----HHHH
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEV--TRVTLAYEYCKQGDSATAMIILESLDKKLWIRT-----VNTL 615 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~l 615 (675)
..|..++.... .+.+ +.....+.+....-...-. ....++..+..+|++++|..-++.....+.... --.|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34555555543 3333 4455556665532111111 223356778899999999999998765432222 2457
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.+.....|.+|+|+..++...+.+. .......-++++...|+.++|+..|+++++.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 7888999999999999988655544 3556777899999999999999999999876
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.085 Score=43.60 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 044815 222 DASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTV 301 (675)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (675)
|..++..+|.++++.|+.+....+++..-. +.++.. ... +. --......|+..+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~---~~---------~~~~spl~Pt~~lL~A 57 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKE---GD---------YPPSSPLYPTSRLLIA 57 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------ccc---Cc---------cCCCCCCCCCHHHHHH
Confidence 345677778888888888877777765543 222210 000 00 1122345788888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK 344 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 344 (675)
++.+|+..|++..|+++.+...+..+++.+..+|..|+.-...
T Consensus 58 Iv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 58 IVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888888888876554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.6 Score=39.86 Aligned_cols=204 Identities=18% Similarity=0.235 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 044815 335 YTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCK 414 (675)
Q Consensus 335 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 414 (675)
|..-..+|-..+++++|...+.+..+. ...|...| -....++.|..+.+++.+. +--+..|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 334444555566666666655554421 11111111 1122344555555555543 1223345555666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcCCHH
Q 044815 415 KGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKA---GL--NPDIHAYTTLIAAFCRQKKMK 489 (675)
Q Consensus 415 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g~~~ 489 (675)
+|..+-|-..+++.-+ ..+.-++++|++++++.... +- .--...+..+...+.+..+++
T Consensus 104 ~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 6666666655555432 12233444444444443221 00 000112333344455555555
Q ss_pred HHHHHHHHHHH----CCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHH
Q 044815 490 ESEKFFQEAIT----AGLFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQIG--C-APDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 490 ~A~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+|-..+.+-.. ..-.++ -..|-..|-.|.-..++..|.+.++.--+.+ . .-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 55544433221 000111 1234455555666667777777777643321 1 12345666666665 45666665
Q ss_pred HHHH
Q 044815 562 CQFY 565 (675)
Q Consensus 562 ~~~~ 565 (675)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=3.6 Score=43.94 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 044815 217 RGVCADASSYKL-----MVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKG 291 (675)
Q Consensus 217 ~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 291 (675)
.|++.+..-|.. +|.-+...+.+..|.++-..+...-.. +...|.....-+.+..+ ..-+++.+.+++-.+..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d-~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSD-KMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccC-ccchHHHHHHHHHhccc
Confidence 466666655543 566777888899999888777543222 24556666655555432 22233333333333222
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 292 WKPNVYTHTVLIDGLCKKGWTEKAFRLFLK 321 (675)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 321 (675)
. .....|..+.+.-..+|+.+-|..+++.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3455677788888889999999888643
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.6 Score=41.30 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
....|+..+|...|........ -+...--.++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3344555555555555554322 123334444555555555555555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.062 Score=53.84 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=57.4
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN----ITYGALISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
.+...++.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|++++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999988 45774 35888999999999999999999999984
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.59 E-value=1 Score=36.74 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+..+.+.|+-|.-.+++..+.+ +-++++..+..++.+|.+.|+..++.+++.++.+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444555555555555555544 3334566666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.58 E-value=5.5 Score=45.05 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLFPTKE----TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK 554 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 554 (675)
++.--+.|.+.+|..++. |+.. .|.+...-+...+.+++|.-+|+..-+ ....+.+|..
T Consensus 915 ~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHH
Confidence 333344555555555542 4443 344444445566777777776665422 2234556777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGISPCE--VTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
.|++.+|+.+..++.... +. .+-..|+..+...++.-+|-++..+....+ .--+..||+...+++|....
T Consensus 978 ~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~-----~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSDP-----EEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred hccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH-----HHHHHHHhhHhHHHHHHHHH
Confidence 788888887777764311 11 122556667777777777777766654432 22344566666777777665
Q ss_pred HHH
Q 044815 633 HKL 635 (675)
Q Consensus 633 ~~~ 635 (675)
...
T Consensus 1050 ~~~ 1052 (1265)
T KOG1920|consen 1050 SKA 1052 (1265)
T ss_pred Hhc
Confidence 544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.5 Score=41.01 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 369 TYTSLIYGHCKVGNF---ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR 431 (675)
Q Consensus 369 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 431 (675)
++..++.+|...+.. ++|..+++.+.... +-.+.++..-++.+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555554443 33444444443332 112334434444444456666666666666554
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.9 Score=40.75 Aligned_cols=148 Identities=15% Similarity=0.088 Sum_probs=77.0
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCH
Q 044815 198 ACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSI 277 (675)
Q Consensus 198 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 277 (675)
....|++.+|...|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+....++.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 445666666666666666542 2233444556666677777777777666654432111111111112222222111233
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 044815 278 KQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRA 351 (675)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 351 (675)
.+.. ...... +-|...-..+...+...|+.++|++.+-.+++++.-.-|...-..++..+.-.|..+.+
T Consensus 223 ~~l~---~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 223 QDLQ---RRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHH---HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 2222 222221 12566666777788888888888888777776544344555556666666555544333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.29 Score=40.48 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHH
Q 044815 363 LLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGK-EGCTPNIYAYNAIIDG 411 (675)
Q Consensus 363 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~ 411 (675)
..|+..+..+++.+|+..+++..|.++.+...+ .+++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445555555555555555555555555554432 2344444555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.6 Score=45.74 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSM-ICGYLRDGNISSAVKYFQRMNQIG--C-APDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
.+.+.|.+++..+.+. .|+...|... .+.+...|+.++|++.|++..... . +.....+--+.-++.-..++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4556666666666654 2555444433 233445666666666666544210 0 01122333344455666677777
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCH-------HHHHHHHHHHh
Q 044815 562 CQFYESMIGKGISPCEVTR-VTLAYEYCKQGDS-------ATAMIILESLD 604 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~ 604 (675)
.+.|.++.+..-- ....| +..+.++...|+. ++|.++|.++.
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7777776653211 12222 2334445556666 66666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.11 E-value=7.7 Score=43.96 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=43.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLFPTKE--TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS 556 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 556 (675)
+.+|..+|+|++|..+..++... .+.. +-..|+.-+...+++-+|-++..+... . ....+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHh
Confidence 44555555555555555544321 1111 124555666667777777666666543 1 123344566667
Q ss_pred CHHHHHHHHHHHH
Q 044815 557 KLDEACQFYESMI 569 (675)
Q Consensus 557 ~~~~A~~~~~~~~ 569 (675)
.+++|.++.....
T Consensus 1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHhcc
Confidence 7777777665544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.8 Score=38.89 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 482 FCRQKKMKESEKFFQEAITAGL--FPTKETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
-.+.|++++|.+.|+.+....+ +-...+--.++.++.+.+++++|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456778888888877775521 122445556666777888888888888877663
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.9 Score=36.62 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD 520 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 520 (675)
++..+...+.......+++.+...+. .+....+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 34444444455555555555544432 3444555555555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.44 Score=38.62 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=67.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---Ch---hhHHHHHHHHHcc
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKKL---WI---RTVNTLIRKLCSE 622 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~---~~~~~l~~~~~~~ 622 (675)
-++...|+.+.|++.|.+.+. +-| ....|+.-+.+|.-.|+.++|++-+++...-. .. ..|-.-+..|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356788999999999999888 444 45678888889999999999998888865521 11 1233344456778
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 044815 623 KRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~ 641 (675)
|+.+.|..-|+.+-+.|..
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8999999999988888865
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.94 E-value=2.6 Score=42.96 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLF-PTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
..+..++-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555666666666666666653221 1233455566666666666666666666543
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.7 Score=35.35 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=72.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH---HHHHHcCC
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMV---VAYCRMGR 238 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~ 238 (675)
.++..|+.+.|++.|.+.+.. .|...+.||.-..++.-+|+.++|+.=+++..+..-..........+ ..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 567889999999999998886 36788999999999999999999999999988743233333333333 35677899
Q ss_pred HHHHHHHHHHHhHCCC
Q 044815 239 VTEADRWLSAMLDRGA 254 (675)
Q Consensus 239 ~~~A~~~~~~m~~~g~ 254 (675)
-+.|..=|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998988887763
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.1 Score=43.61 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
..+..++.+.|+.++|++.+++|++....- .......|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345555566666666666666665422111 12344556666666666666666666543
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.059 Score=33.11 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+|..|+.+|.+.|++++|.+++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777777777777777754
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.23 Score=43.54 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=69.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-ChhhHHHHHHHH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPCE------VTRVTLAYEYCKQGDSATAMIILESLDKK-L-WIRTVNTLIRKL 619 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~ 619 (675)
=.+-+.+.|++++|..-|.++++. -|.. ..|..-+.++.+.+.++.|+.-..+...- | .....-.-+.+|
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 345577889999999999999883 3322 22333456777888888888877765542 2 222233334567
Q ss_pred HccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 620 CSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
-+..++++|++-|+++++.+|. ....-...+..
T Consensus 179 ek~ek~eealeDyKki~E~dPs-~~ear~~i~rl 211 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS-RREAREAIARL 211 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc-hHHHHHHHHhc
Confidence 7888999999999999999887 44444444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.9 Score=43.35 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=112.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCH
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAY----TTLIAAFCRQKKM 488 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~ 488 (675)
-..|...+|-..++++++. .+.|...++..=.++...|+.+.-...++++... ..+|...| ..+..++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578888888889998875 6778888888888999999999988888888765 24444333 3344556688999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHHhcCCHHHHHHH
Q 044815 489 KESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-D---NITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 489 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~---~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
++|++.-++..+.+. -|.-.-.++...+-..|++.++.++..+-... .+- + ..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999988887653 35555667778888899999999987765431 111 1 11122233345567899999999
Q ss_pred HHHHHhCCCCC
Q 044815 565 YESMIGKGISP 575 (675)
Q Consensus 565 ~~~~~~~g~~p 575 (675)
|+.-+-..+.-
T Consensus 270 yD~ei~k~l~k 280 (491)
T KOG2610|consen 270 YDREIWKRLEK 280 (491)
T ss_pred HHHHHHHHhhc
Confidence 98765543443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.3 Score=34.79 Aligned_cols=62 Identities=24% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL 433 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 433 (675)
...++.....|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++-+++.++-+.|.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334455556666666666666655432 45556666666666666666666666666665553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.1 Score=36.80 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=89.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISPCEV---TRVT 582 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~ 582 (675)
...|..-+. +.+.++.++|+.-|..+.+-|...-+. ............|+...|...|++.-.....|-.. ....
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444443 456778899999999998866543222 22233445678899999999999988754444322 1122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDKKLWI---RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
-+..+...|.+++.....+.+....++ ..-..|+-+-.+.|++..|.+.|+++......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 345567788888888877777654332 223567777788999999999998887744443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.7 Score=35.64 Aligned_cols=127 Identities=11% Similarity=0.065 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044815 510 YTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK 589 (675)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 589 (675)
...++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. . .+......++..+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHH
Confidence 4567777888889999999999998876 356778899999998764 3445555552 1 122223345566677
Q ss_pred cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 590 QGDSATAMIILESLDKKLWIRTVNTLIRKLCSE-KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
.+.++++.-++.++.. +...+..+.+. ++++.|++++.+. . ++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~-----~-~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ-----N-NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC-----C-CHHHHHHHHHHHHc
Confidence 7888888888877643 22333444444 7889998888762 2 66788877776654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.40 E-value=4.2 Score=37.68 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 381 GNFERAYDLMDLMGKEGCTPNIY---AYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
.+.++|+.-|.+..+..-....+ ....++..+.+.+++++.++.+.+++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 35566666666555432122222 22334555555555555555555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.2 Score=46.12 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=71.3
Q ss_pred HhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 343 CKEEKMNRAEMLLERMK-EQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEA 421 (675)
Q Consensus 343 ~~~~~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 421 (675)
.-.++++++.++.+.-. -..+ +..-.+.++..+.+.|..+.|+++-..-. .-.+...+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 34566666666654111 1011 13345566666666666666665543211 123344556666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044815 422 YELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA 501 (675)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 501 (675)
.++.++ ..+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 655432 23455666666666666666666665555432 344444555556655555555554443
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 502 GLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 502 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
|- ++....++...|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 31 33334444445555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.7 Score=44.84 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=100.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044815 304 DGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNF 383 (675)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 383 (675)
....-.|+++++.+....-.--..+ +..-.+.++..+-+.|..+.|+.+-..-.. -.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCH
Confidence 4455678888888776521111111 244577788888888888888887544322 23455678998
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 384 ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRM 463 (675)
Q Consensus 384 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 463 (675)
+.|.++.++. .+...|..|.+...+.|+++-|.+.|++..+ +..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 8888765442 3677899999999999999999998887532 566777788888888877777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 464 VKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
...| -++....++.-.|++++..+++.+
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7665 145555566666888887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.27 E-value=10 Score=41.58 Aligned_cols=192 Identities=13% Similarity=0.090 Sum_probs=87.1
Q ss_pred HhcCCHHHHHHHHHHHhhcCC-CC-----C--HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 044815 378 CKVGNFERAYDLMDLMGKEGC-TP-----N--IYAYNAIIDGLCKKGRVQEAYELLK--------KAFQRELQADKITYT 441 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~-~~-----~--~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~ 441 (675)
+-.+++..|...++.|.+..- .| . ...+....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 345777778887777765311 11 1 2222223333445678888888886 333444444444433
Q ss_pred HH--HHHHHh--cCCHHH--HHHHHHHHHHc-CCCC--CHHHHH-HHHHHHHhcC--CHHHHHHHHHHHHHCC--CCCC-
Q 044815 442 IL--LSEHLK--QAETKQ--ALGLFCRMVKA-GLNP--DIHAYT-TLIAAFCRQK--KMKESEKFFQEAITAG--LFPT- 506 (675)
Q Consensus 442 ~l--i~~~~~--~~~~~~--A~~~~~~m~~~-~~~p--~~~~~~-~li~~~~~~g--~~~~A~~~~~~~~~~~--~~~~- 506 (675)
.+ +-.+.. .....+ +.++++.+... .-.| +..++. .++.++.... ...++...+.+..+.- -..+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 31 112222 222223 66666665542 1122 222333 3333332211 1224444443322211 0111
Q ss_pred ---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC--HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 507 ---KETYTSMICGYLRDGNISSAVKYFQRMNQI-GCAPD--NITYG-----ALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 507 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~--~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
..+++.+...+. .|+..+..+........ .-.|| ...|. .+...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 122333333333 67766655444432221 11222 33453 344457778999999888777654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=4 Score=36.64 Aligned_cols=188 Identities=12% Similarity=0.013 Sum_probs=92.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 044815 447 HLKQAETKQALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 447 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 525 (675)
|-..|-+.-|.--|.+... +.|+ +.+||.|.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 4445555555555555544 3444 55677777777777888888888877777543222222222222 224567777
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 044815 526 AVKYFQRMNQIGC-APDNITYGALISGLCKQSKLDEACQFY-ESMIGKGISPCEVTRVT-LAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 526 A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 602 (675)
|.+-+.+.-+.+. .|-...|-.+.. ..-++.+|..-+ ++... . |..-+.. ++..|. |++.+ ..++++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~--~--d~e~WG~~iV~~yL--gkiS~-e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK--S--DKEQWGWNIVEFYL--GKISE-ETLMER 221 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh--c--cHhhhhHHHHHHHH--hhccH-HHHHHH
Confidence 7766665554321 111222322221 233455555433 23222 1 2222222 222222 22211 112233
Q ss_pred HhhC--C-------ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 044815 603 LDKK--L-------WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLA 648 (675)
Q Consensus 603 ~~~~--~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 648 (675)
+... . -..+|-.++.-+...|+.++|..+|+-++..++- |.+-+.
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy-nfVE~R 275 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY-NFVEHR 275 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH-HHHHHH
Confidence 2221 1 1235666777777777888888877777766654 444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=4.2 Score=39.04 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=57.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHH
Q 044815 165 EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADA----SSYKLMVVAYCRMGRVT 240 (675)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 240 (675)
.+|++.+|...++++++. +|.|...+...-.++.-.|+.+.-...++++...- .+|. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 345555555555555543 35555555555556666666666666666554321 1222 22222233445556666
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044815 241 EADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEE 286 (675)
Q Consensus 241 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 286 (675)
+|.+.-++..+.+. .|...-.++.+.+-.. ++++++.+.+.+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~---~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMN---GRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhc---chhhhHHHHHHh
Confidence 66666555554432 2444444454544444 455555555443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.15 E-value=19 Score=44.28 Aligned_cols=153 Identities=8% Similarity=0.035 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 301 VLIDGLCKKGWTEKAFRLFLKLVR-SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK 379 (675)
Q Consensus 301 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 379 (675)
.+..+-.+++.+.+|+..+++-.. .........-|..+...|...+++|....+...-.. +...+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 455566788899999988877310 000012233455556689999999998888764222 22222 33446778
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHH
Q 044815 380 VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYT-ILLSEHLKQAETKQALG 458 (675)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~ 458 (675)
.|++..|...|+.+.+.+ ++...+++-++......|.++......+-...+. .+....++ .-+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 4447778878887778888888877666555432 22233333 23344456677776655
Q ss_pred HHH
Q 044815 459 LFC 461 (675)
Q Consensus 459 ~~~ 461 (675)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.59 Score=44.30 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHHHHH
Q 044815 154 EVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCA-----RGVCADASSYKL 228 (675)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 228 (675)
.++..++..+...|+++.+...++++.... |-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445566666777777777777777776665 55666777777777777777777777766653 455555555544
Q ss_pred HHHH
Q 044815 229 MVVA 232 (675)
Q Consensus 229 li~~ 232 (675)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.1 Score=41.61 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHH
Q 044815 185 PLITSTLNRVVGIACE-----LGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNA 259 (675)
Q Consensus 185 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 259 (675)
.-|-.+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+=+-. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 3456677777766643 3556777777788888888888888888887664322 122221
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 044815 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWT 312 (675)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 312 (675)
+....-.|= .+-+-+++++++|...|+.||-.+-..|+.++.+.|-.
T Consensus 128 -fQ~~F~HYP-----~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 -FQKVFLHYP-----QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -HHHHHhhCc-----hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222222221 24456788999999999999999999999998887754
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.099 Score=31.50 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=20.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+|..++..+...|++++|+..|+++++.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4666666777777777777777777666553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.11 Score=31.29 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=17.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.|..++..+.+.|++++|++.|+++++..|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455556666666666666666666655543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.52 Score=43.73 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 329 KPNVHTYTAMISGYCK-----EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK 379 (675)
Q Consensus 329 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 379 (675)
..|..+|-+.+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3455566666655543 35566666777788888888888888888776543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.76 E-value=13 Score=40.95 Aligned_cols=225 Identities=16% Similarity=0.055 Sum_probs=121.4
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 044815 378 CKVGNFERAYDLMDLMGKEGCTPNI-------YAYNAII-DGLCKKGRVQEAYELLKKAFQR----ELQADKITYTILLS 445 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 445 (675)
....++++|..+..++...-..|+. ..++.+- ......|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3567889999888887653222221 1233322 2234578889999888877654 23345566777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HH--HHHHHhcCC--HHHHHHHHHHHHHCC---C---CCCHhHHHH
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHAYT---TL--IAAFCRQKK--MKESEKFFQEAITAG---L---FPTKETYTS 512 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~---~l--i~~~~~~g~--~~~A~~~~~~~~~~~---~---~~~~~~~~~ 512 (675)
+..-.|++++|..+..+..+..-..+...+. .+ ...+...|+ .++....|....... . .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887766542222333332 22 223445663 333333343333220 0 012344555
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 044815 513 MICGYLRD-GNISSAVKYFQRMNQIGCAPDNI--TYGALISGLCKQSKLDEACQFYESMIGKGISP----CEVTRVTLAY 585 (675)
Q Consensus 513 li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~ 585 (675)
+..++.+. +...++..-++--......|-.. .+..++......|+.++|...++++......+ +-......+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55565552 12222222222222221112111 22356777888999999999999887643332 2222222222
Q ss_pred --HHHHcCCHHHHHHHHHH
Q 044815 586 --EYCKQGDSATAMIILES 602 (675)
Q Consensus 586 --~~~~~g~~~~A~~~~~~ 602 (675)
.....|+.+.|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23467888887777666
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.75 E-value=3.1 Score=40.41 Aligned_cols=130 Identities=15% Similarity=0.305 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCC-
Q 044815 277 IKQAFELLEEMVRKGWKPNVYTHTVLIDGLCK--K----GWTEKAFRLFLKLVRSDNYK--PNVHTYTAMISGYCKEEK- 347 (675)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~- 347 (675)
+++.+.+++.|.+.|+..+..+|-+....... . -...+|..+|+.|.+...+- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44455566666666666555554442222222 1 12345666666665544322 233344444333 2222
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcC-C--HHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 044815 348 ---MNRAEMLLERMKEQGLLPNTN--TYTSLIYGHCKVG-N--FERAYDLMDLMGKEGCTPNIYAYNAII 409 (675)
Q Consensus 348 ---~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g-~--~~~A~~~~~~m~~~g~~~~~~~~~~li 409 (675)
.+.+..+|+.+.+.|+..+.. ....++ +++... . ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iL-aL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHIL-ALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345566666666666655432 222222 222211 1 346667777777777776666655443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.45 Score=45.37 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.+-|.++|++++|+..|...+. ..| |.+++..-..+|.+..++..|..-+..++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4445555666666666555444 234 555555555555555555555555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.16 E-value=5.4 Score=34.73 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=14.8
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 044815 494 FFQEAITAGLFPTKETYTSMICGYLRDGNIS 524 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 524 (675)
+++.+.+.++.|+...|..+++.+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3333444444455555555555555555433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.18 Score=30.95 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=20.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
+|..|+..|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788888889999999998888553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.8 Score=34.43 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITA 501 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~ 501 (675)
..|+.++.+.+++++|...+++.++.
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.02 E-value=2.2 Score=40.59 Aligned_cols=75 Identities=15% Similarity=0.015 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLG-----KDQNVDRVSLAALK 651 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 651 (675)
++..++..+..+|+.+.+...++++.. +.+...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 445566677777777777777777655 23566777777777788877777777776543 56777666666555
Q ss_pred HH
Q 044815 652 NA 653 (675)
Q Consensus 652 ~~ 653 (675)
.+
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 54
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.90 E-value=5.4 Score=34.23 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 554 KQSKLDEACQFYESMIGKGISPCEVTRV-TLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.++.+++..++..+.- +.|...... .-++.+.+.|++.+|+.+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44555555555555555 444433332 234445555666666666665544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=7.2 Score=35.10 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 044815 369 TYTSLIYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
||--+..-+...|+.++|..+|+-.+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4555555555666666666666655543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.60 E-value=11 Score=36.84 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=38.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----c
Q 044815 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR----QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR----D 520 (675)
Q Consensus 449 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 520 (675)
..+++..+...+......+ +......+...|.. ..+..+|.++|..+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4456666666666665533 12333333333332 2345556666655554432 1222223333332 2
Q ss_pred CCHHHHHHHHHHHHHCC
Q 044815 521 GNISSAVKYFQRMNQIG 537 (675)
Q Consensus 521 g~~~~A~~~~~~m~~~~ 537 (675)
.+..+|..++++..+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 24555555555555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.28 Score=29.35 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..|..++.++...|++++|++.++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.35 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+|..++.++...|++++|...++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5788999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.09 E-value=3.1 Score=36.92 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 044815 152 AHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLIT--STLNRVVGIACELGLVEYAEEVFDEMCA 216 (675)
Q Consensus 152 a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 216 (675)
.+..+..+...|.+.|+.+.|++.|.++.+....+.. ..+..+++.....|++..+....++...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666777778888888888888887776444333 4566677777777777777777666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.55 Score=30.34 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 044815 190 TLNRVVGIACELGLVEYAEEVFDEMCAR 217 (675)
Q Consensus 190 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 217 (675)
++..+...|.+.|++++|+++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.83 E-value=3.1 Score=36.77 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=69.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGCAPD-----NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYE 586 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 586 (675)
=.+-+.+.|++++|..-|.+.++. +++. .+.|..-..++.+.+.++.|+.-..+.++ +.|+. .....-+.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 456678899999999999999885 4443 23566666788899999999999999998 44532 233334678
Q ss_pred HHHcCCHHHHHHHHHHHhhC
Q 044815 587 YCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~~ 606 (675)
|.+...+++|+.-|.++...
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999988763
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.66 Score=35.38 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
.=++.+-++.+...+.-|++....+.+.+|.+.+++..|.++++.+..|||
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 335566667777777778888888888888888888888888887776765
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.54 E-value=24 Score=38.58 Aligned_cols=63 Identities=8% Similarity=0.085 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHc
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK-------MNRAEMLLERMKEQ 361 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~ 361 (675)
...-.+|-.+.++|++++|.++..+... ........+-..+..|+...+ -++...-|++....
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3344677778888888888888744322 233444556666666655422 23444455555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.38 E-value=15 Score=35.80 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhcCC-
Q 044815 348 MNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK--VG----NFERAYDLMDLMGKEGC---TPNIYAYNAIIDGLCKKGR- 417 (675)
Q Consensus 348 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 417 (675)
+++.+.+++.|.+.|+.-+..+|.+....... .. ...+|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677778888887777666553322222 11 25667778888877542 2344455555433 2233
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 418 ---VQEAYELLKKAFQRELQADK--ITYTILLSEHLKQAE--TKQALGLFCRMVKAGLNPDIHAYTTLI 479 (675)
Q Consensus 418 ---~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li 479 (675)
.+.+..+|+.+.+.|...+- ...+.++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34455555555555544322 222222222211111 335556666666666665555554443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.77 Score=35.45 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
+..+-++.+...+.-|++....+.+.+|.+.+++.-|.++++.+..|||
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 5566677777888888888888888899999999999999988888876
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.20 E-value=20 Score=36.87 Aligned_cols=176 Identities=14% Similarity=0.155 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
|.....+++..+...-...-.+.+-.+|...| -+-..|..++.+|..+ ..++-..+|+++.+..+ .|.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44445555555555555555555555555543 3445555566666555 33555556665555321 12222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHH--cCCHHHHHHHHHHHhhCC----ChhhHHHHHHHHHccC
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCK--QGDSATAMIILESLDKKL----WIRTVNTLIRKLCSEK 623 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g 623 (675)
-|- .++.+.+..+|.+++..=+.-.. .....+=.-+-. ..+.+..+.+...++... ....+..+-..|....
T Consensus 141 ~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 333 25555566666555542111000 000000000111 234444555555544421 2233444445555666
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 624 RVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 624 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
++++|++++..+++.+-+ |.-....++.
T Consensus 220 N~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 220 NWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred CHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 777777777766666655 5444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.88 E-value=10 Score=33.03 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044815 209 EVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMV 288 (675)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 288 (675)
+.+..+.+.+++|+...+..+|..+.+.|++.... .+...++-+|.......+-.+.. ....+.++=-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~-----~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN-----QYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc-----cChHHHHHHHHHH
Confidence 45555566778888888888888888888765544 44455666676666555544322 2334444444444
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 289 RKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERM 358 (675)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 358 (675)
++ =...+..++..+...|++-+|+++..+.... +......++.+..+.++...-..+++-.
T Consensus 86 kR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 86 KR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 0113556777888888888888876554221 1122233445554555544433444333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.65 E-value=3.5 Score=36.61 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN--ITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.+..+..-|++.|+.++|++.|.++.+....+.. ..+-.++......+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666666666777777766666664333332 2445566666666666666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.54 Score=29.74 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.++..|+.+|...|++++|.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777777777777777777664
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.49 E-value=21 Score=35.93 Aligned_cols=66 Identities=3% Similarity=0.001 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP---TKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
....++..++..+.+.|.++.|...+..+...+... .....-.-+..+-..|+..+|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678889999999999999999999998754211 344455556677788999999999998877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=20 Score=34.64 Aligned_cols=124 Identities=11% Similarity=0.026 Sum_probs=64.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS-KLDEACQFYESMIGKGISPCEVTRVTLA 584 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 584 (675)
+..+-...+.++.+.++ ++|+..+-.+.+ .+|...-...+.++.+.+ ....+...+..++. .++..+....+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555555555555 445555555554 244444444444555432 13345555555543 23444555566
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 585 YEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.++.+.|+ ..|...+-+..+.++ .....+.++.+.|.. +|...+.++.+..+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 66666666 345544444443333 223456666666664 57777777766554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.69 E-value=30 Score=36.47 Aligned_cols=370 Identities=11% Similarity=0.070 Sum_probs=193.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHH
Q 044815 164 AEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIAC-ELGLVEYAEEVFDEMCAR-GVC-ADASSYKLMVVAYCRMGRVT 240 (675)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~ 240 (675)
.+.|..+.+.++|++-.. |++.+...|...+..+. ..|+.+.....|+..... |.. .+..-|...|.--..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 445556666666666554 25666666666665444 456777788888887762 221 24556888888778889999
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHHc---C-CCCChhhHHHHHHHHHh-c
Q 044815 241 EADRWLSAMLDRGAILDNATLTLLITAFCDKGF------RGSIKQAFELLEEMVRK---G-WKPNVYTHTVLIDGLCK-K 309 (675)
Q Consensus 241 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~-~ 309 (675)
....+|++.++.. ...|+.....|.+.-. .-..+++.++-....+. + ..+.......-+.--.. .
T Consensus 169 ~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 9999999998752 2222222222222100 01223332222222110 0 00000111111100000 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C----CCCHHHHHHHHHHHHhcCC
Q 044815 310 GWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQG---L----LPNTNTYTSLIYGHCKVGN 382 (675)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~----~p~~~~~~~li~~~~~~g~ 382 (675)
+..+++.....+. ....-..+-......+....++.-...- + .++..+|..-+..-.+.|+
T Consensus 245 ~~l~~~~~~l~~~------------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~ 312 (577)
T KOG1258|consen 245 KSLTEEKTILKRI------------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD 312 (577)
T ss_pred chhhHHHHHHHHH------------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc
Confidence 1111111111110 0001111222222333333444433321 1 2245678888888888999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 383 FERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCR 462 (675)
Q Consensus 383 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 462 (675)
++.+.-+++...-- |..-...|-..+......|+.+-|..++....+-..+..+.+--.-....-..|+.+.|..+++.
T Consensus 313 ~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~ 391 (577)
T KOG1258|consen 313 FSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQR 391 (577)
T ss_pred HHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999888876532 22234455556666666689888888887766554333333332223334456799999999998
Q ss_pred HHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhHHHHHHHHHH-----HcCCHHHHHHHHHHH
Q 044815 463 MVKAGLNPDIH-AYTTLIAAFCRQKKMKESE---KFFQEAITAGLFPTKETYTSMICGYL-----RDGNISSAVKYFQRM 533 (675)
Q Consensus 463 m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m 533 (675)
+.+.- |+.. .-..-+....+.|+.+.+. .++....... -+......+.--+. -.++.+.|..++.++
T Consensus 392 i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~ 467 (577)
T KOG1258|consen 392 IESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEA 467 (577)
T ss_pred HHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 88763 4432 2233345556778887777 3333333221 22223333332222 357888899999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC
Q 044815 534 NQIGCAPDNITYGALISGLCKQS 556 (675)
Q Consensus 534 ~~~~~~p~~~~~~~l~~~~~~~g 556 (675)
.+. .+++...|..+++.+...+
T Consensus 468 ~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 468 NDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhc-CCccHHHHHHHHHHHHhCC
Confidence 875 4556677777777665544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.34 E-value=12 Score=31.58 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=24.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 519 RDGNISSAVKYFQRMNQIGCAPDNI---TYGALISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
..++.+++..++..|.- +.|+.. ++...+ +...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 35555666666655554 334322 222222 34556666666666665553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.33 E-value=17 Score=33.26 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=13.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 044815 553 CKQSKLDEACQFYESMIGKGI 573 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~ 573 (675)
...+++.+|+.+|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777766433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.29 E-value=38 Score=37.20 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=33.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCC---CCHHHHH-----HHHHHHHhcCchhHHHHHHHHHH
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQN---VDRVSLA-----ALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+.+...+. .|+.++.......+.....+ -....|. .+...+-..|+.++|.....++-
T Consensus 539 ~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 44444444 77777766655554433222 1344553 34445777899999888877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.2 Score=42.72 Aligned_cols=96 Identities=20% Similarity=0.098 Sum_probs=74.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--ChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKKL--WIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 624 (675)
-.+-|.++|.+++|+..|...+. ..| +.+++..-+.+|.+..++..|..-......-+ -...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999888 566 77888888899999999988877666654422 23455555566666889
Q ss_pred HHHHHHHHHHHhcCCCCCCHHH
Q 044815 625 VGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
..||.+-++.+++..|+ +...
T Consensus 181 ~~EAKkD~E~vL~LEP~-~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK-NIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcc-cHHH
Confidence 99999999999999887 4443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.57 E-value=1 Score=26.85 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+|..++.+|...|++++|.+.++++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777776654
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.81 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.+..++.++.+.|++++|.+.++++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556777888888888888888887763
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.32 E-value=44 Score=36.66 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=21.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhc
Q 044815 229 MVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDK 271 (675)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 271 (675)
+|-.+.|.|++++|.++..+.... .......+...+..+...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 444566667777666666443332 233344555555555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.31 E-value=6.7 Score=36.78 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=15.5
Q ss_pred HHHHHHHhcCchhHHHHHHHHHH
Q 044815 649 ALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 649 ~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.++.++++.|+|.+|..+....+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 35666777777777777665544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.30 E-value=5.4 Score=35.65 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=54.0
Q ss_pred HHHcCCHHHHHHHHHHHhhCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCch
Q 044815 587 YCKQGDSATAMIILESLDKKL---WIRTVNTLIRKLCSEKRVGMAALFFHKLLGK---DQNVDRVSLAALKNACYESNKY 660 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 660 (675)
+.+.|+ ++|.+.|-.+...+ ++.....|+..|. ..+.++|+.++.++++. +.++|+..+.+|+.++.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 56777777776654 3444455555444 66888999999888765 3367899999999999999999
Q ss_pred hHHH
Q 044815 661 ALFS 664 (675)
Q Consensus 661 ~~A~ 664 (675)
++|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9875
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.14 E-value=0.66 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=21.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
+|..++..|.+.|++++|...|+++++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777778888888888877776554
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.51 E-value=5.1 Score=38.12 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCC---CCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC
Q 044815 217 RGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRG---AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWK 293 (675)
Q Consensus 217 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 293 (675)
.|.+....+...++..--...+++.+..++-++.... ..| ..+-...++.+.+. +.++++.++..=+..|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~-~~~~~~~irlllky----~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLR-NWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhc-cccHHHHHHHHHcc----ChHHHHHHHhCcchhccc
Confidence 3444555556666665555667777777777765431 111 12233344444443 567777777777777888
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 294 PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
||..+.+.+|+.+.+.+++.+|..+...++..
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888887777666553
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.32 E-value=37 Score=34.64 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=49.5
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCC
Q 044815 196 GIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRG 275 (675)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 275 (675)
..+...|.++.+.+.+...... +.....+..++++...+.|++++|..+-+-|....++ +...........-.. |
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l---~ 405 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADAL---Q 405 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHH---h
Confidence 3455667777777666555432 2234455666677777777777777777777665554 222222221111111 4
Q ss_pred CHHHHHHHHHHHHHc
Q 044815 276 SIKQAFELLEEMVRK 290 (675)
Q Consensus 276 ~~~~a~~~~~~~~~~ 290 (675)
-++++...++++...
T Consensus 406 ~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 406 LFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHHhcc
Confidence 566666666666544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.77 Score=27.65 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 044815 222 DASSYKLMVVAYCRMGRVTEA 242 (675)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A 242 (675)
|+.+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 445555555555555555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.05 E-value=19 Score=31.04 Aligned_cols=54 Identities=9% Similarity=-0.118 Sum_probs=30.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLIT-STLNRVVGIACELGLVEYAEEVFDEMCAR 217 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 217 (675)
.-.+.++.+++..++..+.-.. |.. ..-..-...+...|++++|+.+|+++.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3345556666666666665532 332 22222233455677777777777776654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.62 E-value=33 Score=33.43 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=86.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR---- 484 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 484 (675)
...+++..+...+......+. ......+...|.. ..+..+|...+..+.+.| .......|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCc
Confidence 356778889988888776432 2344444444443 456888999999887766 33344456666655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDG-------NISSAVKYFQRMNQIGCAPDNITYGALISGLCK--- 554 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 554 (675)
..+..+|..+|+++.+.|..+.......+...|..-. +...|...+.++-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 4488999999999999875433222333444433321 1225666666655544 22233333333322
Q ss_pred -cCCHHHHHHHHHHHHhCCC
Q 044815 555 -QSKLDEACQFYESMIGKGI 573 (675)
Q Consensus 555 -~g~~~~A~~~~~~~~~~g~ 573 (675)
..++++|...|+...+.|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 2255566666666665543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.13 E-value=4.7 Score=38.39 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=63.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044815 291 GWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN--YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTN 368 (675)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 368 (675)
|......+...++..-....+++++...+-++..... ..|+...+ +++ -++-.-+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~i-rlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWI-RLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHH-HHHHccChHHHHHHHhCcchhccccchh
Confidence 3344445555555555556677777777666532211 11221111 112 2233456677887777777788888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 044815 369 TYTSLIYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887776666543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.11 E-value=31 Score=38.78 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=10.5
Q ss_pred HHhcCChhHHHHHHHHHh
Q 044815 198 ACELGLVEYAEEVFDEMC 215 (675)
Q Consensus 198 ~~~~g~~~~A~~~~~~~~ 215 (675)
+..+|++++|.+.|+++.
T Consensus 356 lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHhhhHHHHHHHHHhhc
Confidence 344566666666666654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.93 E-value=1.5 Score=27.60 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
.+++.++..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777777654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.87 E-value=33 Score=32.66 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=25.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 338 MISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDL 392 (675)
Q Consensus 338 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (675)
....|..+|.+.+|..+.++.+... +.+...+-.++..+...|+--.|.+-++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3344445555555555555544431 12344444555555555554444444433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.82 E-value=12 Score=33.47 Aligned_cols=77 Identities=16% Similarity=0.037 Sum_probs=40.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHH
Q 044815 518 LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK---GISPCEVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~ 594 (675)
.+.|+ ++|.+.|-++...+.--++.....++.-|. ..+.+++..++.++++. +-.+|+..+..|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 456666655555443334444444443333 45566666666666542 22445555666666666666665
Q ss_pred HH
Q 044815 595 TA 596 (675)
Q Consensus 595 ~A 596 (675)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 54
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.71 E-value=2.7 Score=43.41 Aligned_cols=102 Identities=16% Similarity=-0.056 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
...|+...|...+..+......-..+....|+....+.|...+|-.++.+... ...+.++..+++++....+++.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 45788899999888887632222335566788888888888888888877544 2345567788888889999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 631 FFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
.|++++++.++ +.++-+.|..+-+
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 99999999998 7777777665544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.52 E-value=61 Score=35.44 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=62.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 044815 160 VSSFAEIGRLKEGFSMVIEMTNNGLPL---ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRM 236 (675)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 236 (675)
|+-+.+.+.+++|+++.+..... .+ -......++..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34456677788887776664432 23 2356677777888888888888887777643 566676666666666
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 044815 237 GRVTEADRWLSAMLDRGAILDNATLTLLITAFCD 270 (675)
Q Consensus 237 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 270 (675)
++...... -+.......+...|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 65443322 22222223455666666666654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.25 E-value=12 Score=34.24 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=77.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCH
Q 044815 516 GYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDS 593 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~ 593 (675)
.|....+++.|+..|.+.+. +.|+.. -|+.-+.++.+..+++.+..-..+.++ +.|+.+ ..+.++........+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 35556678888888877776 567764 456667777888889888888888887 667654 345677778888888
Q ss_pred HHHHHHHHHHhh-------CCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 594 ATAMIILESLDK-------KLWIRTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 594 ~~A~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
++|+..+++... .+....+..|..+=-+.=...++.++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888888887632 12334556555543333344555555544
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.16 E-value=13 Score=34.28 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGK------GISPCEVTR-----------VTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
+...-.+-+.+.|++.+|..-|.+++-. .-+|-..-| .+...++...|++-++++--.++.+.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444455677888888888888776521 122322222 12233444456666666666665542
Q ss_pred --CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 607 --LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 607 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+..+|..-+.+.+..=+.++|..-|.++++.+|.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 34555555555555555677777777777776664
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.76 E-value=52 Score=33.98 Aligned_cols=238 Identities=11% Similarity=0.109 Sum_probs=125.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHH-HH
Q 044815 423 ELLKKAFQRELQADKITYTILLSEHLKQA------ETKQALGLFCRMVKAG-LNP-DIHAYTTLIAAFCRQKKMKES-EK 493 (675)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~------~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~A-~~ 493 (675)
.+|++..+ ..+....|+..|..|...- ....-..+++...+.+ ..+ ....|..+.-.++......++ ..
T Consensus 303 ~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 45555443 2344555555555554432 2333344444444332 222 345566666666655543332 22
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcC-CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHH-H-HHHHHH
Q 044815 494 FFQEAITAGLFPTKETYTSMICGYLRDG-NISSA-VKYFQRMNQIGCAPDNITYGALISGLCKQSK-LDEA-C-QFYESM 568 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A-~-~~~~~~ 568 (675)
+..+. +..+...|-.-+....+.. +++-- ..++......-+.+-...|+... .|+ .+.. . .++..+
T Consensus 381 l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 22232 3346666655555554321 22111 11222232221223333444333 222 2211 1 122222
Q ss_pred HhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHH--ccCCHHHHHHHHHHHhcCCCCCC
Q 044815 569 IGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLC--SEKRVGMAALFFHKLLGKDQNVD 643 (675)
Q Consensus 569 ~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~ 643 (675)
.. -..|+..++ ..+..-+.+.|-.++|.+.+..+..- +....+..+|..-. ..-+...+.++|+.|...--. |
T Consensus 452 ~s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~-d 529 (568)
T KOG2396|consen 452 LS-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA-D 529 (568)
T ss_pred HH-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC-C
Confidence 22 234566666 45777788889999999999988763 35556666665432 223478888999988765334 7
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 644 RVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 644 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+..|.....--...|.-+-+-.++.++++-
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 888887777777888888888888877763
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.18 E-value=5.1 Score=35.01 Aligned_cols=45 Identities=20% Similarity=0.076 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc----hhHHHHHHHHH
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK----YALFSDLSQRI 670 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~ 670 (675)
+++|+.-|++++..+|+ ...++..++.+|...+. ..+|.++|+++
T Consensus 51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 34555555666666666 55666666666655443 23444444444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.02 E-value=1.2 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.++.++.+.|++++|.+.|+++++.-|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 345555566666666666666665544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.83 E-value=29 Score=36.56 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 553 (675)
..+.+++-+.+.|-.++|++ +.+|...- .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~---------~s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE---------LSTDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhh---------cCCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 45566666666676666544 23333322 223457788888888766542 4567888999988
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 044815 554 KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFH 633 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (675)
..|++..|.+.|.+..+ +..|+..+...|+-+-...+-....+.. ..|.-.-+|...|++++..+++.
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g---~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG---KNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc---ccchHHHHHHHcCCHHHHHHHHH
Confidence 99999999888887755 2245556666777654444444333321 12333345677899998888776
Q ss_pred HH
Q 044815 634 KL 635 (675)
Q Consensus 634 ~~ 635 (675)
.-
T Consensus 746 ~t 747 (794)
T KOG0276|consen 746 ST 747 (794)
T ss_pred hc
Confidence 53
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.63 E-value=27 Score=36.74 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=51.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 307 CKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERA 386 (675)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 386 (675)
.+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+..
T Consensus 648 l~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 4556666666554332 3445566666666666666666666655443 33444455555555544
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 387 YDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427 (675)
Q Consensus 387 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 427 (675)
..+-....+.| ..|.. ..+|...|+++++.+++.+
T Consensus 712 ~~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHh
Confidence 44444555444 22221 1234445666666666544
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.71 E-value=9.6 Score=31.49 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhh--CC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 574 SPCEVTRVTLAYEYCKQGDSA---TAMIILESLDK--KL--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 574 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.++..+...+++++.+..+.+ +.+.+++.+.+ .| .......|.-++.+.|+++.++++.+.+++..|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 566777888999999887654 46668888765 22 2233455677889999999999999999998887
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.64 E-value=6.7 Score=37.43 Aligned_cols=61 Identities=10% Similarity=-0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
..+-.+|.+.++++.|++..+.+.. +.++.-+.--+-.|.+.|.+..|..-++..++..|+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 3455566677777777777777544 345555666666677777777777777776666654
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.56 E-value=4.9 Score=32.49 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
|..+-+..+...+.-|++......+.+|.+.+|+.-|.++++.+..|||
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 3445566677778888888888888888888888888888888888876
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.49 E-value=17 Score=28.39 Aligned_cols=46 Identities=7% Similarity=-0.025 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 044815 171 EGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCA 216 (675)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 216 (675)
+..+-++.+....+.|.+.+..+.+++|.+.+++..|.++|+.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555566677777777777777777777777777777765
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=49 Score=32.01 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 540 PDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
+|...-...+.++.+.|+ ..|...+-+.++.+. .....+.++...|.. +|...+.++.
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 344444444445555544 234444333333221 122344444444443 3444444443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=85 Score=34.62 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=113.2
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 044815 449 KQAETKQALGLFCRMVKAG-LNPD--IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 449 ~~~~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 525 (675)
...+.+.|..++....... ..+. ......+.......+...+|...+....... .+......-+..-.+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3556788888888775443 2222 1233444433334333566777766654332 345555555666668899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-----HHHHH
Q 044815 526 AVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSAT-----AMIIL 600 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-----A~~~~ 600 (675)
+...+..|.... .-...-.--+.+++...|+.++|..+|+.+... . +|+.++. -.+.|..-. .-..-
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LA-a~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVA-AQRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHH-HHHcCCCCCCCCCCCCchh
Confidence 888888886532 223333344667777789999999999998541 1 2333221 112222100 00000
Q ss_pred HHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 601 ESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
..+... .--.-+..+.+.|+..+|...+..+... . +......++....+.|.++.+.....
T Consensus 403 ~~~~~~----~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 403 SALTQG----PEMARVRELMYWNMDNTARSEWANLVAS-R--SKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred hhhccC----hHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 000000 1122344566778888888888777664 2 44556666777777777777766554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.45 E-value=2.6 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=17.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.|..++..+...|++++|...+++.++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555566666666666666666655443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.26 E-value=4.5 Score=29.75 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=31.1
Q ss_pred HccCCHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 620 CSEKRVGMAALFFHKLLGKDQNVD--RVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
...++.++|+..|+++++.-+++. ..++..++.+|+..|++.++.++.-
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777766533 1244555666777777777666543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.18 E-value=2.1 Score=23.78 Aligned_cols=22 Identities=18% Similarity=-0.002 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHH
Q 044815 647 LAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 647 ~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
...++.++...|+.++|.+.++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.11 E-value=25 Score=27.16 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044815 171 EGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVV 231 (675)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 231 (675)
++.+-++.+......|++.+..+-+++|.+.+++..|.++|+.+..+ +..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44455555556667777777777788888888888888887776633 1123344554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 92.6 bits (228), Expect = 2e-19
Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 4/180 (2%)
Query: 322 LVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ---GLLPNTNTYTSLIYGHC 378
A +++ A LL Q L + Y +++ G
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYE-LLKKAFQRELQADK 437
+ G F+ ++ ++ G TP++ +Y A + + ++ + E L++ Q L+
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQE 497
+ +LLSE + K + P + L+ + K
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.5 bits (220), Expect = 1e-18
Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 4/238 (1%)
Query: 309 KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTN 368
+ +++ R P ++ + ++ + + + L
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 369 TYTSLIYGHCKVGNFERAYDLMDL---MGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELL 425
+ A+ L+ + ++ + YNA++ G ++G +E +L
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 426 KKAFQRELQADKITYTILLSEHLKQAETKQALG-LFCRMVKAGLNPDIHAYTTLIAAFCR 484
L D ++Y L +Q + + +M + GL L++ R
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN 542
+K K P + ++ S K + + C +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.1 bits (180), Expect = 8e-14
Identities = 16/201 (7%), Positives = 52/201 (25%), Gaps = 6/201 (2%)
Query: 204 VEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWL---SAMLDRGAILDNAT 260
++ + + + ++ A L + +L
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 261 LTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFL 320
++ + +G+ K+ +L + G P++ ++ + + ++ L
Sbjct: 168 YNAVMLGWAR---QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 321 KLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKV 380
+ + + K ++S + + + LP + L+
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
Query: 381 GNFERAYDLMDLMGKEGCTPN 401
L + C
Sbjct: 285 DGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.1 bits (162), Expect = 1e-11
Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 4/157 (2%)
Query: 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQ-- 496
LL E + + +A L+ ++ +
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 497 -EAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ 555
T + Y +++ G+ R G V + G PD ++Y A + + +Q
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 556 SKLDEACQFY-ESMIGKGISPCEVTRVTLAYEYCKQG 591
+ + E M +G+ + L E +
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 8e-09
Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 6/166 (3%)
Query: 153 HEVMQCMVSSFAEIGRLKEGFSMVI---EMTNNGLPLITSTLNRVVGIACELGLVEYAEE 209
+ + +L +++ L N V+ G +
Sbjct: 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY 186
Query: 210 VFDEMCARGVCADASSYKLMVVAYCRMGRVTEA-DRWLSAMLDRGAILDNATLTLLITAF 268
V + G+ D SY + R + +R L M G L +L++
Sbjct: 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
Query: 269 CDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEK 314
++ + + P V T +L D K G
Sbjct: 247 DRATVLKAVHKVKPTFSLPPQL--PPPVNTSKLLRDVYAKDGRVSY 290
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 2e-07
Identities = 21/181 (11%), Positives = 46/181 (25%), Gaps = 14/181 (7%)
Query: 419 QEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTL 478
KA R LQ + + ++ L+ + P L
Sbjct: 50 MPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPES-----------PWEEQLARL 98
Query: 479 IAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI-- 536
+ + + + + A L ++ + L + A +
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ 158
Query: 537 -GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSAT 595
Y A++ G +Q E + G++P ++ +Q A
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
Query: 596 A 596
Sbjct: 219 T 219
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 8e-10
Identities = 90/562 (16%), Positives = 170/562 (30%), Gaps = 155/562 (27%)
Query: 12 LRGKPSRTPSLTLFVIRSLCYQTHHHNFLANSKQPAFSSTSSSPSPPQSLVKTVCSMVLE 71
L K + FV L ++ FL + + PS + L
Sbjct: 71 LLSKQEEM--VQKFVEEVL---RINYKFLMS----PIKTEQRQPSMMTRMYIE-QRDRLY 120
Query: 72 SYYQQF---HLRSSPPRLNLQIDIDSLTHEQAITV-----------VASLANEAGSMVAL 117
+ Q F ++ P L L+ + L + + + + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 118 SF-FYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMV 176
F +W ++ N V++ + +I S
Sbjct: 181 DFKIFW---------------------LNLKNCNSPETVLEMLQKLLYQID--PNWTSRS 217
Query: 177 IEMTNNGLPL--ITSTLNRVVGIA----CELGL--VEYAE--EVFDEMCARGVCADASSY 226
+N L + I + L R++ C L L V+ A+ F+ C
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC----------- 266
Query: 227 KLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTL-------LITAFCDKGFRGSIKQ 279
K+++ R +VT+ LSA LD+ ++TL L+ + D + ++
Sbjct: 267 KILLTT--RFKQVTDF---LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 280 AFE-------LLEEMVRKG---WKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYK 329
++ E +R G W V D L L ++ Y+
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKL------TTIIESSLNVLEPAEYR 372
Query: 330 ----------PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLL---PNTNTYTSLIYG 376
P+ H T ++S + + +++ ++ + L+ P +T + I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPS 430
Query: 377 HCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL--- 433
++L K N YA + + + Y + K +L
Sbjct: 431 I-----------YLELKVK---LENEYALHR---------SIVDHYNIPKTFDSDDLIPP 467
Query: 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEK 493
D+ Y+ + HLK E + + LF RMV + F QK +S
Sbjct: 468 YLDQYFYS-HIGHHLKNIEHPERMTLF-RMV----------FLDF--RFLEQKIRHDSTA 513
Query: 494 FFQEAITAGLFPTKETYTSMIC 515
+ + Y IC
Sbjct: 514 WNASGSILNTLQQLKFYKPYIC 535
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 73/493 (14%), Positives = 141/493 (28%), Gaps = 138/493 (27%)
Query: 273 FRGSIKQAFEL--LEEMVRKGWKPNVYTHTV-----------LIDGLCKKGWTEKAFRLF 319
F + F+ +++M + H + L L K E+ + F
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMVQKF 82
Query: 320 LKLVRSDNYK------------PNVHT--YTAMISGYCKE----EKMN--RAEMLLE-RM 358
++ V NYK P++ T Y + K N R + L+ R
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 359 KEQGLLPNTNTYTSLIYG-------------------HCK---------VGNFERAYDLM 390
L P N LI G CK + N ++
Sbjct: 143 ALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 391 DLMGKEGCTPNIYAYNAIIDGLCK-KGRVQEAYELLKKAFQRELQADKITYTILLSEHLK 449
+++ K + + D K R+ L++ + + + +L +++
Sbjct: 200 EMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVL--LNVQ 254
Query: 450 QAETKQALGLFCRMVKAGLNPDIHAYTT--------LIAAFCRQKKMKESEKFFQEAITA 501
A+ A L C+++ TT L AA +
Sbjct: 255 NAKAWNAFNLSCKIL----------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 502 GLF-----------PTKETYT------SMICGYLRDGNISSAVKYFQRMNQIGCAPDNIT 544
L P +E T S+I +RDG + ++ +N D +T
Sbjct: 305 SLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATW--DNWKHVNC-----DKLT 356
Query: 545 YGALISGLCKQSKLDEACQFYESMIGKGISPCEV--TRVTLAYEYCKQGDSATAMIILES 602
+I + E + ++ + + P + L+ + M++
Sbjct: 357 --TIIESSLNVLEPAEYRKMFDRL---SVFPPSAHIPTILLSL-IWFDVIKSDVMVV--- 407
Query: 603 LDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLL--GKDQNVDRVSLAALKNACYESNKY 660
VN L + EK+ + + + K + + +L Y K
Sbjct: 408 ---------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 661 ALFSDLSQRIAEG 673
DL +
Sbjct: 459 FDSDDLIPPYLDQ 471
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 48/382 (12%), Positives = 95/382 (24%), Gaps = 61/382 (15%)
Query: 275 GSIKQAFELLEEMVRKGWKP-NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV- 332
+ +A E +E + L+ E L L
Sbjct: 214 SNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271
Query: 333 -HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMD 391
Y ++ E+++ RAE L GL +++ F +
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLS--SINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329
Query: 392 LMGKEGCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKA---------------------- 428
+ + P + Y + L + G + Y +
Sbjct: 330 KILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387
Query: 429 --------FQRELQADK---ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH-AYT 476
F + D + + E QA+ + + L H Y
Sbjct: 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYL 445
Query: 477 TLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGYLRDGNISSAVKYFQR--- 532
L + + + ++ Q + LF + ++ +A+ +FQ
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503
Query: 533 --MNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYC 588
T+ L K D A + +S + +A Y
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL--LLSTNDANVHTAIALVYL 561
Query: 589 KQGDSATAMIILESLDKKLWIR 610
+ A + L + L I
Sbjct: 562 HKKIPGLA---ITHLHESLAIS 580
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 29/277 (10%), Positives = 80/277 (28%), Gaps = 37/277 (13%)
Query: 306 LCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYC---KEEKMNRAEMLLERMKEQG 362
++A + + + D + ++S + EE ++ ++
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 363 LLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAY 422
+ Y + RA D L G + D L + R +
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDY--LSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325
Query: 423 ELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH-AYTTLIAA 481
+ K + + + Y + L+ + E + + +V +P+ + +
Sbjct: 326 AITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIY 382
Query: 482 FCRQKKMKESEKFFQEAITAGLFPT-KETYTSMICGYLRDGNISSAVKYFQR-------- 532
+ K+ E+ ++F ++ T + P + + +G A+ +
Sbjct: 383 YLCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440
Query: 533 ---MNQIGCAPDNITYGALISGLCKQSKLDEACQFYE 566
+G + + A ++ +
Sbjct: 441 HLPYLFLGMQ------------HMQLGNILLANEYLQ 465
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 49/377 (12%), Positives = 106/377 (28%), Gaps = 76/377 (20%)
Query: 232 AYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGF------RGSIKQAFELLE 285
Y MGR+++ ++ + + C++G+ ++A E
Sbjct: 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162
Query: 286 EMVRKGWKP-NVYTHT---VLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISG 341
+ + K KP N + + L ++ A + +R P+
Sbjct: 163 KALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---LNPDNQYL------ 211
Query: 342 YCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTP- 400
K+ A L + +E E A + P
Sbjct: 212 -----KVLLALKLHKMREEGEEEGEGEKL------------VEEALEKA---------PG 245
Query: 401 NIYAYNAIIDGLCKKGRVQEAYELLKKA------------------FQRELQADKITYTI 442
+ +K +A ELLKKA + Q +
Sbjct: 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305
Query: 443 LLSEHLKQAETKQALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITA 501
+ + A+ + + N + + L + + +E+E +FQ+ +
Sbjct: 306 MYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363
Query: 502 GLFPTKETYTSMICG---YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK--QS 556
L P + + G + A+ +F +I + + L K +
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKM 421
Query: 557 KLDEACQFYESMIGKGI 573
+L + E++
Sbjct: 422 RLSKNGADSEALHVLAF 438
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 40/309 (12%), Positives = 89/309 (28%), Gaps = 42/309 (13%)
Query: 313 EKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKE---------QGL 363
KA L + ++ T+ Y +++ ++ ++++K +
Sbjct: 75 RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134
Query: 364 LPNTNTYTSLIYGHCKVGNFERAYDLMD--LMGKEGCTPNIYAYNAIIDGLCKKGRVQEA 421
P + C ERA + L K L Q A
Sbjct: 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194
Query: 422 YELLKKAFQRELQADKITYTILLSEHL-----KQAETKQALGLFCRMVKAGLNPD-IHAY 475
+ L++A L D +LL+ L + E + L ++ P
Sbjct: 195 IDPLRQAI--RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVL 250
Query: 476 TTLIAAFCRQKKMKESEKFFQEAI------------------TAGLFPTKETYTSMICGY 517
+ + R+ + ++ + ++A+ M
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310
Query: 518 LRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISPC 576
I AV + ++ ++ + L S + +EA +++ K ++P
Sbjct: 311 KLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368
Query: 577 EVTRVTLAY 585
+ L Y
Sbjct: 369 AKQLLHLRY 377
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 10/161 (6%)
Query: 412 LCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD 471
+ G + A + +++E + +L S H + ++ +K NP
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPL 65
Query: 472 IH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT-KETYTSMICGYLRDGNISSAVKY 529
+ AY+ L + + +++E+ + ++ A+ L P + Y ++ + G++ AV+
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 530 FQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMI 569
+ Q PD L + L +L+EA Y I
Sbjct: 124 YVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 10/169 (5%)
Query: 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLF 460
N + + R+ + A ++ Y+ L + + ++ + ++A+ +
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHY 90
Query: 461 CRMVKAGLNPDIH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT-KETYTSMICGYL 518
++ L PD Y L AA M+ + + + A+ P + +
Sbjct: 91 RHALR--LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLK 146
Query: 519 RDGNISSAVKYFQRMNQIGCAPDN-ITYGALISGLCKQSKLDEACQFYE 566
G + A + + + P+ + + L Q ++ A +E
Sbjct: 147 ALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 48/373 (12%), Positives = 105/373 (28%), Gaps = 56/373 (15%)
Query: 222 DASSYKLMVVAYCRMGRVTEA-----------DRWLSAMLDRGAILDNATLTLLITAFCD 270
+ Y + Y G + + A+L R + ++
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES------------ 105
Query: 271 KGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKG---WTEKAFRLFLKLVRSDN 327
G+ A L + G +L L K+ E + + +
Sbjct: 106 ---LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162
Query: 328 YKPNVHTYTAM------ISGYCKEEKMNRAEMLLER-MKEQGLLPNTNTYTSLIYGHCKV 380
++ ++ + +S + A LL ++ + +
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222
Query: 381 GNFERAYDLMDLMGKEGCTPNIY-AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKIT 439
+ + N A K + +A LL+++ L +
Sbjct: 223 DMYHSLLSANTVDDPLR--ENAALALCYTGIFHFLKNNLLDAQVLLQESI--NLHPTPNS 278
Query: 440 YTILLSEHLKQAETKQALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEA 498
Y L + +++ F + V LNP+ Y + + K +++ FQ+A
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVD--LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336
Query: 499 ITAGLFPTK-ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNIT----YGALISGLC 553
+ L P Y + C + G + + +F P + + L
Sbjct: 337 QS--LNPENVYPYIQLACLLYKQGKFTESEAFFNET--KLKFPTLPEVPTFFAEI---LT 389
Query: 554 KQSKLDEACQFYE 566
+ D A + Y+
Sbjct: 390 DRGDFDTAIKQYD 402
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 23/278 (8%)
Query: 306 LCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP 365
G A L + ++ + + K+ + + + +LP
Sbjct: 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162
Query: 366 NTNTYTSLI---------YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416
+ + S N++ AY L+ + + + L K
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD-ALQRLYSATDEGYLVANDLLTKS 221
Query: 417 RVQEAYELLKKAFQRELQADK---ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH 473
+ Y L A + + + H + A L + L+P +
Sbjct: 222 --TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN--LHPTPN 277
Query: 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGYLRDGNISSAVKYFQR 532
+Y L ++ +E KFFQ+A+ L P TY Y + +A + FQ+
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKAVD--LNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335
Query: 533 MNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMI 569
+ P+N+ Y L L KQ K E+ F+
Sbjct: 336 AQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 12/174 (6%)
Query: 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI-TYTILLSEHLKQAETKQALGL 459
+ A + G +Q +L +A L D++ + ++ L +
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQA--HGLPPDQVVAIASNIGGKQALETVQRLLPV 282
Query: 460 FCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGY 517
C+ GL PD + A + + ++ +A GL P + S G
Sbjct: 283 LCQAH--GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASHDGGK 338
Query: 518 LRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIG 570
+ + + G PD + + G + G
Sbjct: 339 QALETVQRLLPVLCQA--HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 26/174 (14%), Positives = 49/174 (28%), Gaps = 12/174 (6%)
Query: 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI-TYTILLSEHLKQAETKQALGL 459
+ A + G VQ +L +A L ++ ++ L +
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLCQAH--GLTPAQVVAIASHDGGKQALETMQRLLPV 248
Query: 460 FCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGY 517
C+ GL PD + A + I + ++ +A GL P + S G
Sbjct: 249 LCQAH--GLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASHGGGK 304
Query: 518 LRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIG 570
+ + + G PD + + G + G
Sbjct: 305 QALETVQRLLPVLCQ--AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 34/182 (18%)
Query: 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADK----------ITYTILLSEHLKQAET 453
AY + G ++G ++A L+KA L+ D + + K A+
Sbjct: 39 AYIQLGLGYLQRGNTEQAKVPLRKA----LEIDPSSADAHAALAVVFQTE--MEPKLADE 92
Query: 454 --KQALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ET 509
++AL + QK+ +E+ + EA L+P +
Sbjct: 93 EYRKALAS---------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143
Query: 510 YTSM-ICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYES 567
+ ++ + L+ + A +YF++ ++ + + L K+ + A Q+Y+
Sbjct: 144 FENLGLV-SLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 568 MI 569
Sbjct: 201 FA 202
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 42/161 (26%)
Query: 412 LCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD 471
L ++ R +EAY+ L +A + L P+
Sbjct: 115 LYEQKRYEEAYQRLLEA-----------------------------------SQDTLYPE 139
Query: 472 IH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGYLRDGNISSAVKY 529
+ L + KK +++++F++++ L + M ++ A +Y
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREYVPARQY 197
Query: 530 FQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMI 569
+ Q N + I D A + +
Sbjct: 198 YDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 21/170 (12%), Positives = 45/170 (26%), Gaps = 12/170 (7%)
Query: 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI-TYTILLSEHLKQAETKQALGL 459
+ A + G VQ +L +A L ++ ++ L +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQALETVQRLLPV 128
Query: 460 FCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGY 517
C+ L P+ + A + + ++ +A GL P + S G
Sbjct: 129 LCQAHG--LTPEQVVAIASHDGGKQALETVQALLPVLCQAH--GLTPEQVVAIASNGGGK 184
Query: 518 LRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYE 566
+ + + G P + + G +
Sbjct: 185 QALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 232
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 23/178 (12%), Positives = 48/178 (26%), Gaps = 12/178 (6%)
Query: 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLF 460
+ A + G VQ +L +A Q + ++ L +
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ-QVVAIASNSGGKQALETVQRLLPVL 299
Query: 461 CRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGYL 518
C+ L P + A + + ++ +A GL P + S G
Sbjct: 300 CQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQ 355
Query: 519 RDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISP 575
+ + + G P+ + + G + G++P
Sbjct: 356 ALETVQRLLPVLCQ--AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTP 409
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 45/306 (14%), Positives = 82/306 (26%), Gaps = 28/306 (9%)
Query: 274 RGSIKQAFELLEEMVRK-----GWKPN-VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN 327
KQA E ++ ++ G P V G ++ + +
Sbjct: 78 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG--- 134
Query: 328 YKPN-VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKVGNFER 385
P V + G E + +L + GL P S G + +R
Sbjct: 135 LTPEQVVAIASHDGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQR 192
Query: 386 AYDLMDLMGKEGCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI-TYTIL 443
L L G TP + A + G VQ +L +A L ++
Sbjct: 193 L--LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASN 248
Query: 444 LSEHLKQAETKQALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAG 502
++ L + C+ L P + A + + ++ +A G
Sbjct: 249 GGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNSGGKQALETVQRLLPVLCQAH--G 304
Query: 503 LFPTK-ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDE 560
L P + S G + + + G P + + G +
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASHDGGKQALETVQR 362
Query: 561 ACQFYE 566
Sbjct: 363 LLPVLC 368
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 21/182 (11%), Positives = 56/182 (30%), Gaps = 12/182 (6%)
Query: 382 NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYT 441
+ Y ++ + + A+ K +AY K+ Q+ +
Sbjct: 36 DRTEMYYWTNVDKNSEISSKLATELALA--YKKNRNYDKAYLFYKELLQKAPN-NVDCLE 92
Query: 442 ILLSEHLKQAETKQALGLFCRMVKAGLNPD-IHAYTTL-IAAFCRQKKMKESEKFFQEAI 499
+ + + K AL ++ ++++ L D + A L + ++ K+ + + +
Sbjct: 93 ACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150
Query: 500 TAGLFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL 558
+ + L A Q++ P L L + ++
Sbjct: 151 S--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDKILRIEKEV 206
Query: 559 DE 560
+
Sbjct: 207 NR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 29/183 (15%), Positives = 70/183 (38%), Gaps = 12/183 (6%)
Query: 345 EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN-IY 403
++R EM ++ ++ T L + K N+++AY + ++ PN +
Sbjct: 32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVD 89
Query: 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSE--HLKQAETKQALGLFC 461
A + +G+ ++A + +K +L+AD + I L +L + K+ L
Sbjct: 90 CLEACAEMQVCRGQEKDALRMYEKIL--QLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147
Query: 462 RMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD 520
+ + +A + + +++ Q+ I FP+ E ++ +
Sbjct: 148 KKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDKILRIE 203
Query: 521 GNI 523
+
Sbjct: 204 KEV 206
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 13/177 (7%), Positives = 52/177 (29%), Gaps = 25/177 (14%)
Query: 412 LCKKGRVQEAYELLKKA-----------FQRELQADKITYTILLSE----HLKQAETKQA 456
+ G+ +A ++ + + + + L +E + K +A
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73
Query: 457 LGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT-KETYTSM- 513
+ +++ P+ + + + K++ + +++ + L +
Sbjct: 74 YLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLG 129
Query: 514 ICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMI 569
YL ++ + ++ ++ ++A + +I
Sbjct: 130 NYYYLTAEQEKKKLETDYK--KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 15/169 (8%)
Query: 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKIT----YTILLSEHLKQAETKQALGL 459
A+ + +A E ++A ++ D Y L L + +++
Sbjct: 44 AWLVRAEIYQYLKVNDKAQESFRQAL--SIKPDSAEINNNYGWFLCGRLNRPA--ESMAY 99
Query: 460 FCRMVKAGLNPDIH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGY 517
F + + P + A +Q + +E + + ++ P + +
Sbjct: 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTK 157
Query: 518 LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYE 566
+ G + A YF++ + + L+ G L A YE
Sbjct: 158 MLAGQLGDADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYE 203
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 35/183 (19%)
Query: 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADK----------ITYTILLSEHLKQAET 453
+ + ++A ++ A L++D Y L + +A+
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDA----LKSDPKNELAWLVRAEIYQYL--KVNDKAQE 63
Query: 454 --KQALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQ-KKMKESEKFFQEAITAGLFPTK-E 508
+QAL + PD C + + ES +F +A+ +PT
Sbjct: 64 SFRQAL---------SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI 114
Query: 509 TYTSM-ICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYE 566
+ IC + G A Y +R P + L +L +A +++
Sbjct: 115 ANLNKGIC-SAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFK 171
Query: 567 SMI 569
Sbjct: 172 KYQ 174
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 9/173 (5%)
Query: 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLF 460
N D L K EA E+ K ++ Y + + A+ A
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 461 CRMVKA-GLNPDIH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGY 517
+ ++ + + + +Q A+ T+ + Y + +
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD--RDTTRLDMYGQIGSYF 118
Query: 518 LRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMI 569
GN A++Y ++ + + + L + +A + ++
Sbjct: 119 YNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 37/221 (16%)
Query: 414 KKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAET--------------KQALGL 459
++ EA+E + KA + K ++ ++ A +QA
Sbjct: 3 AAQKISEAHEHIAKA----EKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDA 58
Query: 460 FCRMVKAGLNPDIH-----AYTTLIAAFCRQKKMKESEKFFQEAIT----AGLFPTKETY 510
+ + +A N A+ ++M E+ ++ ++A G T
Sbjct: 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118
Query: 511 TSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI-----TYGALISGLCKQSKLDEACQFY 565
+ ++S AV +Q+ + + + G L +Q K DEA
Sbjct: 119 LDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL 178
Query: 566 ESMIG-----KGISPCEVTRVTLAYEYCKQGDSATAMIILE 601
+ + C + + D A +
Sbjct: 179 QKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 7e-04
Identities = 28/167 (16%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA-ETKQALGLFCR 462
+ N + + ++G ++EA L +KA E+ + L+ L+Q + ++AL +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKA--LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 463 MVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT-KETYTSMICGYLRD 520
++ ++P AY+ + + ++ + + + AI + P + ++++ +
Sbjct: 69 AIR--ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDS 124
Query: 521 GNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYE 566
GNI A+ ++ + PD Y L L + + +
Sbjct: 125 GNIPEAIASYRTA--LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 9/115 (7%)
Query: 455 QALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT-KETYTS 512
+ L V+ P A+ L A E Q + L P E
Sbjct: 7 RELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVAR 62
Query: 513 MICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYE 566
+ + A Q+ AP++ L L + + A Y
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQA--SDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 9e-04
Identities = 37/287 (12%), Positives = 71/287 (24%), Gaps = 33/287 (11%)
Query: 306 LCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP 365
G A L + ++ + + K+ E +
Sbjct: 83 NEGLGKFADAMFDLSVLSLNGDFN-DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPT 141
Query: 366 NTNTYTSLIYGHCK------------VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLC 413
+T + + G F+ +
Sbjct: 142 ELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE-LMNGLSNLYKR 200
Query: 414 KKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV--------- 464
+A E KA + + K A + + G+F +
Sbjct: 201 SPESYDKADESFTKAARLFEEQLDK-NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259
Query: 465 --KA-GLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGYLRD 520
KA L P +++Y + + E +F +A+ L Y
Sbjct: 260 IKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFIL 317
Query: 521 GNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYE 566
N A K F + P+NI Y L +++K D+ +
Sbjct: 318 QNYDQAGKDFDKA--KELDPENIFPYIQLACLAYRENKFDDCETLFS 362
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 675 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.13 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.12 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.07 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.99 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.98 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.93 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.91 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.86 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.83 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.81 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.77 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.56 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.55 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.47 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.43 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.39 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.31 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.22 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.21 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.19 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.09 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.03 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.02 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.99 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.72 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.67 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.54 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.42 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.4 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.13 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.99 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.91 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.87 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.74 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.7 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.62 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.55 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.51 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.51 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.34 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.27 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.07 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.8 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.54 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.48 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.46 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.36 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.21 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.37 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.84 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.81 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.38 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.03 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.8 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.66 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.54 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.52 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.46 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.4 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.28 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.26 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.07 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.09 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.08 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 87.05 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.07 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.22 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.57 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=361.55 Aligned_cols=485 Identities=13% Similarity=0.047 Sum_probs=378.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 044815 154 EVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAY 233 (675)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 233 (675)
..+..++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHH
Confidence 45677888888899999999999998864 478889999999999999999999999998654 67999999999999
Q ss_pred HHcCCHHHHHHHHHHHhHC---------------CCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhh
Q 044815 234 CRMGRVTEADRWLSAMLDR---------------GAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYT 298 (675)
Q Consensus 234 ~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 298 (675)
.+.|++++|.++|+++... +...+..+|..++.++.+. |++++|++.|++|.+.+.. +...
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL---SNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCch-hhHH
Confidence 9999999999999953222 1233467888888888886 6888888888888776422 4455
Q ss_pred HHHHHHHHHhcCCHHHHHHH---HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 299 HTVLIDGLCKKGWTEKAFRL---FLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 299 ~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
+..+...+...+..+.+... +..+.. .+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSK-EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHG-GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCccccc-chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55555544433322222111 223222 222334455666777888888888888888888764 578888888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+. .+.+..+|+.++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHH
Confidence 8888888888888888888765 446777888888888888888888888888765 34567788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888753 44677888888888888888888888888887653 4677888888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CC
Q 044815 536 IGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK----GISPC--EVTRVTLAYEYCKQGDSATAMIILESLDK--KL 607 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 607 (675)
.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|.+.++++.+ +.
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 53 346778888888888888888888888888764 55676 56778888888888888888888888654 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 608 WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
+..+|..++.+|.+.|++++|.++|+++++.+|. +...+..++.+|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 6778888888888888888888888888888887 7888887777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=360.23 Aligned_cols=471 Identities=12% Similarity=0.016 Sum_probs=406.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 186 LITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 186 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57788999999999999999999999999864 578899999999999999999999999998653 56889999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044815 266 TAFCDKGFRGSIKQAFELLEEMVRK---------------GWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKP 330 (675)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (675)
..+.+. |++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++.+.. +.
T Consensus 158 ~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~ 232 (597)
T 2xpi_A 158 FCLVKL---YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AK 232 (597)
T ss_dssp HHHHHT---TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHH---hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ch
Confidence 999998 7999999999953221 223468899999999999999999999999998754 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 044815 331 NVHTYTAMISGYCKEEKMNRAE--ML-LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNA 407 (675)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~A~--~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 407 (675)
+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 4556666665544333322221 12 555555555556677888899999999999999999999876 589999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK 487 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 487 (675)
++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875 3478889999999999999999999999999764 5678999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
+++|.++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998643 468899999999999999999999999999864 44788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CCC--hhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 568 MIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-------KLW--IRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 568 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
+.+... .+..++..++..|.+.|++++|.++|+++.. .|+ ..+|..++.+|.+.|++++|++.++++++.
T Consensus 467 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 998432 2578889999999999999999999999754 343 678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 639 DQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 639 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+|. +..+|..++.+|.+.|++++|.+.++++++.
T Consensus 546 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 546 STN-DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 987 8999999999999999999999999999863
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-27 Score=244.03 Aligned_cols=374 Identities=14% Similarity=0.101 Sum_probs=276.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
|++++|.+.++++.+... .+...+..+...+...|++++|...+...++.. +.+..+|..+...+.+.|++++|+..
T Consensus 13 g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 566777766666665432 244555566666677777777777776666543 45566777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 355 LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ 434 (675)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 434 (675)
|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 77776642 2245567777777777777777777777777653 3345566667777777777777777777777653 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 514 (675)
.+..+|..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...++++.+... .+..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHH
Confidence 456677777777888888888888888777764 34567788888888888888888888888877542 3567788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 594 (675)
..|.+.|++++|+..++++.+.+ +.+..+|..++.++.+.|++++|...|+++++.. +.+..++..++..+.+.|+++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888888743 2246678888888888888888888888888742 234567778888888888999
Q ss_pred HHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 595 TAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 595 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
+|.+.++++.+ +.+..++..++..|.+.|++++|+..|+++++..|. +...|..++.++...|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence 98888888765 345678899999999999999999999999999888 88899999888877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-27 Score=241.86 Aligned_cols=359 Identities=16% Similarity=0.089 Sum_probs=318.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG 381 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 381 (675)
+...+.+.|++++|.+.+.++.+.. +.+...+..+...+...|++++|...++...+. .+.+..+|..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCC
Confidence 4567788999999999999988754 445667778888899999999999999998875 3457889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998864 4567789999999999999999999999999864 3355677888899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP- 540 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 540 (675)
++.+.. +.+..+|..+...+...|++++|...|+++.+.+. .+...|..+...+...|++++|+..+++..+. .|
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~ 235 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPN 235 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcC
Confidence 999874 44688999999999999999999999999998753 45778999999999999999999999999884 35
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIR 617 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 617 (675)
+..++..++.++...|++++|...|+++++. .|+ ..++..++..|.+.|++++|.+.++++.+ +.+..+|..++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 4788999999999999999999999999994 453 56788899999999999999999999866 457788999999
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+.+.|++++|+..++++++..|. +..++..++.++.+.|++++|.+.++++++
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999887 899999999999999999999999999886
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=262.15 Aligned_cols=184 Identities=14% Similarity=0.250 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 044815 370 YTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGR---------VQEAYELLKKAFQRELQADKITY 440 (675)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 440 (675)
++.+|++|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 333444444444444444444444444444444444444444433322 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 044815 441 TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD 520 (675)
Q Consensus 441 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 520 (675)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044815 521 GNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553 (675)
Q Consensus 521 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 553 (675)
|+.++|.+++++|.+.|..|+..||+.++..|+
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 555555555555555555555555555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=261.64 Aligned_cols=204 Identities=18% Similarity=0.246 Sum_probs=125.0
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---------hH
Q 044815 280 AFELLEEMVRKGWKPNV-YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK---------MN 349 (675)
Q Consensus 280 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~ 349 (675)
+..+.+++.+++..+.. ..++.+|++|++.|++++|+++|++|.+ .|+.||..+||.||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544332 3456666667777777777777666644 4566677777777666665443 45
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 350 RAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 350 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 430 QRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 430 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
+.|+.||..||+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=231.99 Aligned_cols=449 Identities=12% Similarity=0.013 Sum_probs=297.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 044815 188 TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITA 267 (675)
Q Consensus 188 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 267 (675)
...+......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|...++++.+.+. .+...+..+...
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4566777788888888888888888888764 6888888888888888888888888888887642 255677777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 044815 268 FCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK 347 (675)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 347 (675)
+... |++++|...|+++.+.+. ++......++..+.+......+.+.+..+... +..|+...+............
T Consensus 83 ~~~~---g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 83 NEGL---GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHT---TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------C
T ss_pred HHHH---hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHHhhccC
Confidence 7776 678888888888877653 34444444555444444344443333332211 112222222222111122222
Q ss_pred hHHHHHHHHHHHHcCCC--------C-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----cCC--------CCCH
Q 044815 348 MNRAEMLLERMKEQGLL--------P-NTNTYTSLIYGHCK---VGNFERAYDLMDLMGK-----EGC--------TPNI 402 (675)
Q Consensus 348 ~~~A~~~~~~m~~~g~~--------p-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~ 402 (675)
......+...+...... | +...+......+.. .|++++|...++++.+ ..- +.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 22222222222221111 1 14444444444443 7888888888888877 211 2235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF 482 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 482 (675)
.++..+...+...|++++|...++++.+..+. ...+..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 56777788888888888888888888876543 7778888888888888888888888887764 44567788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 483 CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEAC 562 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 562 (675)
...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888888887643 356677888888888888888888888887642 234567777888888888888888
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 563 QFYESMIGKGIS-PC----EVTRVTLAYEYCK---QGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 563 ~~~~~~~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
..++++.+.... ++ ...+..++..|.+ .|++++|...++++.. +.+...+..++..+.+.|++++|...|
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888763111 11 2367778888888 8888888888888654 345667788888888888888888888
Q ss_pred HHHhcCCCCCCHHHHHHH
Q 044815 633 HKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 633 ~~~~~~~~~p~~~~~~~l 650 (675)
+++++.+|. +...+..+
T Consensus 473 ~~a~~~~~~-~~~~~~~~ 489 (514)
T 2gw1_A 473 EESADLART-MEEKLQAI 489 (514)
T ss_dssp HHHHHHCSS-HHHHHHHH
T ss_pred HHHHHhccc-cHHHHHHH
Confidence 888888876 55555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-24 Score=229.56 Aligned_cols=438 Identities=12% Similarity=0.024 Sum_probs=323.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044815 153 HEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA 232 (675)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 232 (675)
.+.+......+.+.|++++|+..|+++...+ |+..++..+..++.+.|++++|+..|+++.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455567778999999999999999999876 689999999999999999999999999998864 4578899999999
Q ss_pred HHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 044815 233 YCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWT 312 (675)
Q Consensus 233 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 312 (675)
+.+.|++++|...|+++...+. ++......++..+... .....+.+.+..+...+..|+......-..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNK---QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHH---HHHHHHTTC---------------------------CC
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999988763 3444444455444443 23344444444444333333333322222112222222
Q ss_pred HHHHHHHHHHHhcCCCCC---------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCC--------CCH
Q 044815 313 EKAFRLFLKLVRSDNYKP---------NVHTYTAMISGYCK---EEKMNRAEMLLERMKE-----QGLL--------PNT 367 (675)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~---------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~g~~--------p~~ 367 (675)
.....+.. ........+ +...+......+.. .|++++|+..|+++.+ .... .+.
T Consensus 159 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 159 PSVTSMAS-FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCHHHHHH-HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred chhHHHHH-HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 22222211 112221111 14455555555554 8999999999999988 3112 235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 577888889999999999999999998875 338888999999999999999999999998764 44677889999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 044815 448 LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAV 527 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 527 (675)
...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999874 44677888999999999999999999999988643 35778899999999999999999
Q ss_pred HHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 044815 528 KYFQRMNQIGC-APD----NITYGALISGLCK---QSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMI 598 (675)
Q Consensus 528 ~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 598 (675)
..++++.+... .++ ...+..+...+.. .|++++|...++++++. .| +...+..++..|.+.|++++|..
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999876421 111 3378889999999 99999999999999884 34 35677889999999999999999
Q ss_pred HHHHHhh
Q 044815 599 ILESLDK 605 (675)
Q Consensus 599 ~~~~~~~ 605 (675)
.++++..
T Consensus 471 ~~~~a~~ 477 (514)
T 2gw1_A 471 LFEESAD 477 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999766
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-23 Score=216.43 Aligned_cols=341 Identities=13% Similarity=0.090 Sum_probs=231.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+...+..++..+.+.|++++|+.+|+++++.. +.+..+|..+..++...|++++|+..|+++.+.+. .+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 45556666666666666666666666665432 33455666666666666666666666666665432 2455556666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNI---YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
..|.+.|++++|.+.|+++.+.. +.+. ..+..++..+... .+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 66666666666666666665542 1222 3344443331111 1122344566778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
++++|+..++++.+.. +.+...+..++.++.+.|++++|.++|+++.+... .+..+|..++..|...|++++|+..++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888877753 44677788888888888888888888888876532 457778888888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPD-NITYGAL------------ISGLCKQSKLDEACQFYESMIGKGISPC-----EVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~ 593 (675)
++.+. .|+ ...+..+ +..+.+.|++++|...|+++++ +.|+ ...+..++..+.+.|++
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 88764 343 3444433 7788888999999999999887 4454 23567788888899999
Q ss_pred HHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------HHhcC-
Q 044815 594 ATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA------------CYESN- 658 (675)
Q Consensus 594 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g- 658 (675)
++|...++++.. +.+...|..++.+|...|++++|...|+++++..|. +...+..++.+ |...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999988654 346778888999999999999999999999998888 78888887743 44444
Q ss_pred ----chhHHHHHHHH
Q 044815 659 ----KYALFSDLSQR 669 (675)
Q Consensus 659 ----~~~~A~~~~~~ 669 (675)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 55666777765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-23 Score=215.39 Aligned_cols=389 Identities=12% Similarity=0.074 Sum_probs=270.2
Q ss_pred HHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044815 240 TEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLF 319 (675)
Q Consensus 240 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 319 (675)
..+...+.+..... ..+...+..+...+.+. |++++|+..|+++.+.. +.+..++..++.+|...|++++|.+.|
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~---g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAA---GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455555555442 23566788888888887 79999999999998864 347889999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H---HHHHHHHHH------------HHhcCCH
Q 044815 320 LKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-T---NTYTSLIYG------------HCKVGNF 383 (675)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~------------~~~~g~~ 383 (675)
+++++.. +.+...+..+...|.+.|++++|...|+++.+. .|+ . ..+..++.. +...|++
T Consensus 84 ~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 84 TKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9998764 456889999999999999999999999999985 344 4 666666444 7788888
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 384 ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRM 463 (675)
Q Consensus 384 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 463 (675)
++|...++++.+.. +.+..++..++.+|.+.|++++|.+.|+++.+.. +.+..++..++..+...|++++|+..++++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89988888888764 5577888888888888888888888888887653 456778888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHHcCCHHHH
Q 044815 464 VKAGLNPDIHAYTTL------------IAAFCRQKKMKESEKFFQEAITAGLFPT-----KETYTSMICGYLRDGNISSA 526 (675)
Q Consensus 464 ~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A 526 (675)
.+.. +.+...+..+ +..+.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 8753 3344445444 667777777777777777777643 33 33566677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 527 VKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+..++++.+.. +.+..+|..++.+|...|++++|...++++++ +.|+. ..+..+..+....++ ...
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~----------~~~ 381 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQ----------SQK 381 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHH----------HHS
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhc----------ccc
Confidence 77777776642 22466777777777777777777777777777 44543 333333322211111 000
Q ss_pred CCChhhHHHHHHHHHccC-----CHHHHHHHHHH-HhcCCCC--CCH-------HHHHHHHHHHHhcCchhHHHH
Q 044815 606 KLWIRTVNTLIRKLCSEK-----RVGMAALFFHK-LLGKDQN--VDR-------VSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~-~~~~~~~--p~~-------~~~~~l~~~~~~~g~~~~A~~ 665 (675)
. ..|...| +.+++.+.|++ +++..|+ |+. ..+..+..+|...++.+++..
T Consensus 382 ~----------~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 382 R----------DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp C----------CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred h----------hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 0 1122222 56777888876 5665553 332 367788888888888776544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-22 Score=218.98 Aligned_cols=437 Identities=11% Similarity=0.048 Sum_probs=318.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLIT 266 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 266 (675)
....+..+...+.+.|++++|+..|+++.+.. +.++.+|..+..++.+.|++++|.+.++++.+.+. .+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 35678888899999999999999999998864 45788999999999999999999999999988653 25677777778
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHH
Q 044815 267 AFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD-----NYKPNVHTYTAMISG 341 (675)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~li~~ 341 (675)
.+... |++++|+..|+. ... .|+. ....+..+...+...+|...+++++... ...|+ ...+..
T Consensus 102 ~~~~~---g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~----~~~~~~ 169 (537)
T 3fp2_A 102 ANESL---GNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS----NTSLAS 169 (537)
T ss_dssp HHHHH---TCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCC----HHHHHH
T ss_pred HHHHc---CCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch----HhHHHH
Confidence 88776 789999999963 332 2222 2233445666677788888888875531 12233 333444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCCCC-------HHHH
Q 044815 342 YCKEEKMNRAEMLLERMKEQGLLPNTN-TYTSLIYGHCKV--------GNFERAYDLMDLMGKEGCTPN-------IYAY 405 (675)
Q Consensus 342 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~-------~~~~ 405 (675)
+....+.+.+...+..... ..+... ....+...+... |++++|..+++++.+.. +.+ ..++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALAL 246 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHH
Confidence 5566676666655544332 223322 223333332222 47888999999888764 223 2346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
..+...+...|++++|...++++.+.. |+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 677788888999999999999998864 447788888889999999999999999988864 44678888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFY 565 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (675)
|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 324 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999988653 356788889999999999999999999988753 334668888888999999999999999
Q ss_pred HHHHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHH
Q 044815 566 ESMIGKG-----ISPCEVTRVTLAYEYCKQ----------GDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMA 628 (675)
Q Consensus 566 ~~~~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 628 (675)
+++++.. .......+..++..|.+. |++++|...++++.. +.+...+..++..|.+.|++++|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 9987632 111123345566778887 999999999998765 34677888899999999999999
Q ss_pred HHHHHHHhcCCCCCCHHH
Q 044815 629 ALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 629 ~~~~~~~~~~~~~p~~~~ 646 (675)
.+.|+++++..|. +...
T Consensus 482 ~~~~~~al~~~~~-~~~~ 498 (537)
T 3fp2_A 482 IELFEDSAILART-MDEK 498 (537)
T ss_dssp HHHHHHHHHHC---CHHH
T ss_pred HHHHHHHHHhCCC-cHHH
Confidence 9999999998886 4433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-22 Score=214.41 Aligned_cols=432 Identities=16% Similarity=0.077 Sum_probs=329.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044815 153 HEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA 232 (675)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 232 (675)
.+.+......+.+.|++++|+..|+++.+.. |.+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4556677889999999999999999999876 6788999999999999999999999999999874 4578899999999
Q ss_pred HHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcC
Q 044815 233 YCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKG--WKPNVYTHTVLIDGLCKKG 310 (675)
Q Consensus 233 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 310 (675)
+...|++++|...|+.+.. .|+.. ...+..+... +...+|...++++.... ..+........+..+....
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~---~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLER---NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHH---HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHH---HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 9999999999999974432 22222 1122233332 45678888888886541 1112223344566677778
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCH-------HHHHHHH
Q 044815 311 WTEKAFRLFLKLVRSDNYKPNVHTYT-AMISGYCKE--------EKMNRAEMLLERMKEQGLLPNT-------NTYTSLI 374 (675)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li 374 (675)
+.+.+...+.+.. ...+....+. .+...+... |++++|..+++++.+.... +. .++..+.
T Consensus 175 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 175 DSHLEVSSVNTSS---NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp CHHHHHHTSCCCC---SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcc---ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 8877766554332 2233333333 333332222 4789999999999875322 22 3566777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 454 (675)
..+...|++++|...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 8888999999999999999987 4668889999999999999999999999998864 456788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
+|+..++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 44577899999999999999999999999998753 457789999999999999999999999987
Q ss_pred HCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 044815 535 QIGC-----APDNITYGALISGLCKQ----------SKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMI 598 (675)
Q Consensus 535 ~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 598 (675)
+... ......+......+... |++++|...|+++++. .| +...+..++..|.+.|++++|.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 6421 11222345556777787 9999999999999984 34 35677889999999999999999
Q ss_pred HHHHHhh
Q 044815 599 ILESLDK 605 (675)
Q Consensus 599 ~~~~~~~ 605 (675)
.|+++.+
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999766
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-20 Score=185.49 Aligned_cols=330 Identities=14% Similarity=0.089 Sum_probs=231.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
++..+..+...+.+.|++++|...|.++++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 34556667777777777777777777776643 3456667777777777777777777777776642 22456666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCT---PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
..+...|++++|...++++.+.. + .+...+..+...+. ...+..+...+...|
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 77777777777777777766652 1 12233332221100 011222355677777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888777777664 44667777777788888888888888888777542 466777778888888888888888888
Q ss_pred HHHHCCCCCC-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPD-NITYG------------ALISGLCKQSKLDEACQFYESMIGKGISPCE-----VTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~ 593 (675)
+..+.. |+ ...+. .+...+.+.|++++|...++++.+. .|+. ..+..++..|.+.|++
T Consensus 213 ~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 877642 33 33322 2366688999999999999999884 3443 2244578899999999
Q ss_pred HHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 594 ATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 594 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
++|...++++.. +.+...|..++..+.+.|++++|...|+++++.+|. +...+..+..+....+
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHH
Confidence 999999999765 346788999999999999999999999999999998 8888887777655443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-18 Score=181.89 Aligned_cols=353 Identities=13% Similarity=0.105 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cC
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCK----KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK----EE 346 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 346 (675)
+++++|+..|++..+.| +...+..|...|.. .++.++|.+.|.+..+. .+...+..+...|.. .+
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence 34444444444444432 33444444444444 45555555555554432 233444444444444 45
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCH
Q 044815 347 KMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCK----KGRV 418 (675)
Q Consensus 347 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 418 (675)
++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 5555555555555432 34444445555544 455666666666555543 45555555555555 5566
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 044815 419 QEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR----QKKMKE 490 (675)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 490 (675)
++|.+.|++..+.+ +...+..+...+.. .++.++|...|++..+.+ +...+..+...+.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 66666666655542 34445555555554 556666666666665543 34455555555655 667777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 044815 491 SEKFFQEAITAGLFPTKETYTSMICGYLRD-----GNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS---KLDEAC 562 (675)
Q Consensus 491 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~ 562 (675)
|..+|++..+.+ +...+..+...|... +++++|+..+++..+.| +...+..+...|...| ++++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 777777766543 445566666666665 67777777777777643 4455666666666655 677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHH
Q 044815 563 QFYESMIGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHK 634 (675)
Q Consensus 563 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 634 (675)
+.|++..+.| +...+..++..|.. .++.++|.+.|++.....+...+..++..|.+ .+++++|...|++
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7777777753 35566777777777 67777777777777766667777777777776 6778888888888
Q ss_pred HhcCCCC-C-CHHHHHHHHHHHH
Q 044815 635 LLGKDQN-V-DRVSLAALKNACY 655 (675)
Q Consensus 635 ~~~~~~~-p-~~~~~~~l~~~~~ 655 (675)
+.+.+++ | +......++..+.
T Consensus 429 A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 429 ASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHCCCCCcCCHHHHHHHHhcCH
Confidence 7777743 1 3444445544433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-18 Score=178.86 Aligned_cols=363 Identities=12% Similarity=0.074 Sum_probs=313.9
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 044815 280 AFELLEEMVRKGWKPNVYTHTVLIDGLCK----KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK----EEKMNRA 351 (675)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A 351 (675)
++..+....+. .+...+..+...|.. .+++++|++.|.+..+. .+...+..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 34555555554 377888888888888 89999999999998774 467788889999988 8999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 044815 352 EMLLERMKEQGLLPNTNTYTSLIYGHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCK----KGRVQEAYE 423 (675)
Q Consensus 352 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 423 (675)
...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999998864 67778888888888 789999999999999876 67888889999988 889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 044815 424 LLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR----QKKMKESEKFF 495 (675)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 495 (675)
.|++..+.+ +...+..+...|.. .++.++|+..|++..+.+ +...+..+...|.. .+++++|..+|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998864 67888888888888 899999999999999865 66788888888886 88999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 044815 496 QEAITAGLFPTKETYTSMICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ-----SKLDEACQFYE 566 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 566 (675)
++..+.+ +...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|...|+
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9999864 56777788888888 899999999999998754 566777788888887 89999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCC
Q 044815 567 SMIGKGISPCEVTRVTLAYEYCKQG---DSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 567 ~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 639 (675)
+..+.| +...+..++..|...| +.++|.++|++.....+...+..++..|.. .+++++|+.+|+++.+.+
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 999965 3567888999998877 789999999999888889999999999998 899999999999999976
Q ss_pred CCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhc
Q 044815 640 QNVDRVSLAALKNACYE----SNKYALFSDLSQRIAEG 673 (675)
Q Consensus 640 ~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 673 (675)
+...+..|+.+|.. .+++++|.++++++++.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 57889999999998 89999999999999863
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-19 Score=182.52 Aligned_cols=312 Identities=11% Similarity=0.034 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 044815 332 VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDG 411 (675)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 411 (675)
...+..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45566667777777777777777777766422 256667777777777777777777777776653 3356666777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 412 LCKKGRVQEAYELLKKAFQRELQ--ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMK 489 (675)
Q Consensus 412 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (675)
+...|++++|...++++.+..+. .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 77777777777777777654210 12222222221110 112334567888999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMI 569 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (675)
+|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999998753 577889999999999999999999999998853 4467889999999999999999999999999
Q ss_pred hCCCCCCHHH-HH------------HHHHHHHHcCCHHHHHHHHHHHhh-CC-Ch----hhHHHHHHHHHccCCHHHHHH
Q 044815 570 GKGISPCEVT-RV------------TLAYEYCKQGDSATAMIILESLDK-KL-WI----RTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 570 ~~g~~p~~~~-~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~----~~~~~l~~~~~~~g~~~~A~~ 630 (675)
+. .|+... +. .++..+.+.|++++|...++++.. .| +. ..+..++..+.+.|++++|+.
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 83 444322 21 337779999999999999999765 33 22 235568889999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 631 FFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.++++++.+|. +..++..++.++...|++++|.+.++++++.
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999887 8999999999999999999999999999863
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-19 Score=178.30 Aligned_cols=291 Identities=13% Similarity=0.069 Sum_probs=217.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 365 PNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILL 444 (675)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 444 (675)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344455566666667777777777777776653 3344555566677777777777777777777653 34556677777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 044815 445 SEHLKQA-ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNI 523 (675)
Q Consensus 445 ~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 523 (675)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777777653 33566777788888888888888888888877643 2456677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHHH
Q 044815 524 SSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG--------ISPCEVTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 524 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~~~ 595 (675)
++|...++++.+.. +.+...+..+...+...|++++|...++++++.. .......+..++..|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888887743 3356778888888888899999999888887631 12234677888999999999999
Q ss_pred HHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCchh
Q 044815 596 AMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC-YESNKYA 661 (675)
Q Consensus 596 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 661 (675)
|...++++.+ +.+...|..++..+.+.|++++|...++++++..|. +...+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 9999998765 346778899999999999999999999999999988 889999999988 5666644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-16 Score=172.68 Aligned_cols=407 Identities=12% Similarity=0.114 Sum_probs=305.3
Q ss_pred cCCCChHHHHHHHHHHhhhcChhHHHHHHHHhhhCCC-CcchhhhHHHHHHHHHhC--CChhHHHHH-----HHHHHHHH
Q 044815 92 IDSLTHEQAITVVASLANEAGSMVALSFFYWAIGFAK-FRHFMRLYIVCATSLISN--GNFERAHEV-----MQCMVSSF 163 (675)
Q Consensus 92 ~~~l~~~~~~~v~~~~~~~~~~~~al~~f~~~~~~~~-~~~~~~~y~~~~~~l~~~--~~~~~a~~~-----~~~li~~~ 163 (675)
|.+..|+.+...++.+...+.+..|++.++.+...+. |+.....-+.++..-.+. ++..+...- ...+...+
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 4578889888889999889999999999999875554 544444444444433333 333332222 22357788
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044815 164 AEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEAD 243 (675)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 243 (675)
...|++++|..+|++.. ......+.++. ..|++++|.++.++.. ++.+|..+..++...|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999963 22222333332 7889999999988662 5788999999999999999999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 244 RWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLV 323 (675)
Q Consensus 244 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 323 (675)
+.|.+. -|...|..++..+.+. |++++|++.|....+.. ++....+.++.+|++.+++++... | +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~l---GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~-f---I 1190 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTS---GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE-F---I 1190 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH-H---H
Confidence 999764 3788888999999987 79999999999887764 344444569999999999986433 3 2
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 044815 324 RSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIY 403 (675)
Q Consensus 324 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 403 (675)
+ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..
T Consensus 1191 ~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1191 N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 2 367778888999999999999999999985 37999999999999999999999886 3678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044815 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFC 483 (675)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 483 (675)
+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 999999999999999999887654 34566777899999999999999999998887654 445667777777776
Q ss_pred h--cCCHHHHHHHHHHHHHCCCC------CCHhHHHHHHHHHHHcCCHHHHHHHHH-------------HHHHCCCCCCH
Q 044815 484 R--QKKMKESEKFFQEAITAGLF------PTKETYTSMICGYLRDGNISSAVKYFQ-------------RMNQIGCAPDN 542 (675)
Q Consensus 484 ~--~g~~~~A~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~-------------~m~~~~~~p~~ 542 (675)
+ -+++.++.++|..-.. ++ -+...|..++-.|.+.|+++.|....- +... ...|.
T Consensus 1326 Ky~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~ 1401 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANV 1401 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccH
Confidence 5 3456666666654332 22 256789999999999999999984322 1111 23456
Q ss_pred HHHHHHHHHHHhcC
Q 044815 543 ITYGALISGLCKQS 556 (675)
Q Consensus 543 ~~~~~l~~~~~~~g 556 (675)
..|...+.-|...+
T Consensus 1402 elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1402 ELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHhhC
Confidence 66766676666433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-17 Score=174.29 Aligned_cols=428 Identities=10% Similarity=0.037 Sum_probs=283.3
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044815 211 FDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK 290 (675)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (675)
|++..+.. +-|...|..++. +.+.|++++|..+|+++.+.. .-+...|..++..+.+. |++++|..+|++.+..
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~---~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKA---KNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTT
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Confidence 34444432 447778888887 477888888888888887752 22555677777777665 6788888888888765
Q ss_pred CCCCChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHhcCCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHH
Q 044815 291 GWKPNVYTHTVLIDGL-CKKGWTEKAFR----LFLKLVRSDNYKP-NVHTYTAMISGYCK---------EEKMNRAEMLL 355 (675)
Q Consensus 291 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~~~~~~A~~~~ 355 (675)
.|++..|..++... ...|+.++|.+ +|++.+...|..| +...|...+....+ .|++++|..+|
T Consensus 76 --~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 --VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 35666666666433 34566666554 6666655444333 45566666665544 56777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HH
Q 044815 356 ERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK------AF 429 (675)
Q Consensus 356 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------~~ 429 (675)
++.++.........|..........|. .+...++. .+.++++.|..++++ ..
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 777762111111222222111000010 00011110 123445566655554 22
Q ss_pred hCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------
Q 044815 430 QRE---LQAD--------KITYTILLSEHLKQ----AET----KQALGLFCRMVKAGLNPDIHAYTTLIAAFCR------ 484 (675)
Q Consensus 430 ~~~---~~~~--------~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~------ 484 (675)
+.. ++|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 221 2332 23455544333221 222 47778888888763 4567888888888775
Q ss_pred -cCCHH-------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHh
Q 044815 485 -QKKMK-------ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-N-ITYGALISGLCK 554 (675)
Q Consensus 485 -~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~ 554 (675)
.|+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH
Confidence 68887 89999999986322346788999999999999999999999999984 564 3 578888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGISPC-EVTRVTLAYE-YCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
.|++++|..+|++.++. .|+ ...+...+.. +...|+.++|.++|++..+ +.+...|..++..+.+.|+.++|..
T Consensus 369 ~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 369 AEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 99999999999999884 333 2333333332 4468999999999998655 4467889999999999999999999
Q ss_pred HHHHHhcCCCC-C--CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 631 FFHKLLGKDQN-V--DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 631 ~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+|++++..++. | ....|...+......|+.+.+..+.+++++.
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999988654 2 2458888888888999999999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=174.62 Aligned_cols=268 Identities=9% Similarity=0.036 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044815 399 TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTL 478 (675)
Q Consensus 399 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 478 (675)
+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566677888999999999999999999998864 4456677778889999999999999999999874 4467889999
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044815 479 IAAFCRQK-KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSK 557 (675)
Q Consensus 479 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 557 (675)
...+...| ++++|...|+++.+... .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 99999999999998753 457789999999999999999999999998853 2345677779999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----------CCChhhHHHHHHHHHccCCHH
Q 044815 558 LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-----------KLWIRTVNTLIRKLCSEKRVG 626 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~ 626 (675)
+++|...++++++... .+...+..++..|...|++++|...++++.. +.+...|..++..+.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998432 2457778899999999999999999998765 234568899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+|+..++++++.+|. +...+..++.++...|++++|.+.++++++
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999988 889999999999999999999999998875
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=182.72 Aligned_cols=289 Identities=12% Similarity=0.051 Sum_probs=210.9
Q ss_pred hcCCHHHHHH-HHHHHhhcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 379 KVGNFERAYD-LMDLMGKEGC-TP--NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454 (675)
Q Consensus 379 ~~g~~~~A~~-~~~~m~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 454 (675)
..|++++|.+ .+++..+... .| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 6665443211 11 23456667777777777777777777777653 345667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH---------------HHHHHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS---------------MICGYLR 519 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~ 519 (675)
+|+..++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 7777777777664 446677777777777888888888888777775422 2222211 2333348
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044815 520 DGNISSAVKYFQRMNQIGCA-PDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAM 597 (675)
Q Consensus 520 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 597 (675)
.|++++|...++++.+.... ++..++..+...+...|++++|...++++++. .| +...+..++..|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999875311 14788899999999999999999999999884 34 3567888999999999999999
Q ss_pred HHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC----------CHHHHHHHHHHHHhcCchhHHHH
Q 044815 598 IILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV----------DRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 598 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
..++++.. +.+...+..++..|.+.|++++|...|+++++..|.. ...+|..++.++...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99999765 4467788999999999999999999999999887762 17899999999999999999999
Q ss_pred HHHHHHh
Q 044815 666 LSQRIAE 672 (675)
Q Consensus 666 ~~~~~~~ 672 (675)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 9886654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-15 Score=164.25 Aligned_cols=471 Identities=12% Similarity=0.079 Sum_probs=334.9
Q ss_pred cchhhhHHHHHHHHHhCCChhHH-H---HHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCC--------CCHHHHHHHHH
Q 044815 130 RHFMRLYIVCATSLISNGNFERA-H---EVMQC-MVSSFAEIGRLKEGFSMVIEMTNNGLP--------LITSTLNRVVG 196 (675)
Q Consensus 130 ~~~~~~y~~~~~~l~~~~~~~~a-~---~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~ 196 (675)
.....+|++++.++...++-.+. + ..|+. ++--|+...++..|.-.+++ |-. .....|....+
T Consensus 870 ~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~----g~~d~eli~vt~~n~l~k~~ar 945 (1630)
T 1xi4_A 870 CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYER----GQCDLELINVCNENSLFKSLSR 945 (1630)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcc----cCCcHHHHHHHhcchhHHHHHH
Confidence 44677899999999876554443 2 24443 34457777777666665553 211 11122333333
Q ss_pred HHHhcCChhH-----------HHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCC--CCCHHHH
Q 044815 197 IACELGLVEY-----------AEEVFDEMCARGV--CADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGA--ILDNATL 261 (675)
Q Consensus 197 ~~~~~g~~~~-----------A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~ 261 (675)
-+.+..+.+- =..+.+......+ ..|+.--...+++|...|.+.+|++++++..-.+- .-+...-
T Consensus 946 ylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 946 YLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred HHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 3333332221 1123333222111 22444456678899999999999999999984421 1244556
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 262 TLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISG 341 (675)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 341 (675)
+.++....+. +..+..+...+.... + ...+...+...|.+++|..+|++.. -.....+.++.
T Consensus 1026 nlLi~tAIka----D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie- 1087 (1630)
T 1xi4_A 1026 NLLILTAIKA----DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE- 1087 (1630)
T ss_pred HHHHHHHHHh----ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH-
Confidence 6666666664 445555555554321 1 3447788899999999999998852 12222333333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 342 YCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEA 421 (675)
Q Consensus 342 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 421 (675)
..+++++|.++.++. -+..+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|
T Consensus 1088 --~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1088 --HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred --HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHH
Confidence 678899999998865 25788999999999999999999999663 4788889999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044815 422 YELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA 501 (675)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 501 (675)
.+.|...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+
T Consensus 1154 IeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1154 VKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99999888754 33333445889999999988644442 2 446677778999999999999999999885
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044815 502 GLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRV 581 (675)
Q Consensus 502 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 581 (675)
..|..+..+|++.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+.
T Consensus 1222 ------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLe 1284 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 1284 (1630)
T ss_pred ------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHH
Confidence 48999999999999999999999976 356889999999999999999988766432 3455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHc--cCCHHHHHHHHHHHhcCCC-----CCCHHHHHHHHH
Q 044815 582 TLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCS--EKRVGMAALFFHKLLGKDQ-----NVDRVSLAALKN 652 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~ 652 (675)
.++..|.+.|.+++|+.+++....- .....|+-+...|++ -++..++.++|..-....+ . +...|..+..
T Consensus 1285 eli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e-~~~lW~elv~ 1363 (1630)
T 1xi4_A 1285 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE-QAHLWAELVF 1363 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH-HHHHHHHHHH
Confidence 8999999999999999999887553 345567667777665 5578888888886555433 3 5678999999
Q ss_pred HHHhcCchhHHHHH
Q 044815 653 ACYESNKYALFSDL 666 (675)
Q Consensus 653 ~~~~~g~~~~A~~~ 666 (675)
.|.+.|+++.|...
T Consensus 1364 LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhcccHHHHHHH
Confidence 99999999999843
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-16 Score=167.59 Aligned_cols=421 Identities=8% Similarity=0.024 Sum_probs=248.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHH
Q 044815 185 PLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLL 264 (675)
Q Consensus 185 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 264 (675)
|.+...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++.+... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 557778888887 46788888888888888875 35577788888888888888888888888888753 566666655
Q ss_pred HHHHHhcCCCCCHHHHH----HHHHHHHHc-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCC
Q 044815 265 ITAFCDKGFRGSIKQAF----ELLEEMVRK-GWKP-NVYTHTVLIDGLCK---------KGWTEKAFRLFLKLVRSDNYK 329 (675)
Q Consensus 265 l~~~~~~~~~~~~~~a~----~~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 329 (675)
+...... .|+.++|. ++|+..... |..| +...|...+....+ .|++++|..+|++.++. ...
T Consensus 86 ~~~~~~~--~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~ 162 (530)
T 2ooe_A 86 LSYVRET--KGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMI 162 (530)
T ss_dssp HHHHHHH--TTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCT
T ss_pred HHHHHHH--ccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhh
Confidence 5433222 14444444 466665542 4443 45566666666554 68899999999988762 111
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------hhcC---CCC
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLM------GKEG---CTP 400 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~~ 400 (675)
.....|..........+. .+...++. .+.++++.|..+++++ .+.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 112233322211100010 00111110 0123344444444431 1111 223
Q ss_pred C--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH---
Q 044815 401 N--------IYAYNAIIDGLCKK----GRV----QEAYELLKKAFQRELQADKITYTILLSEHLK-------QAETK--- 454 (675)
Q Consensus 401 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~--- 454 (675)
+ ...|...+...... ++. +.+..+|++++.. .+.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 2 23444444332221 122 3566667666654 23456666666666654 56655
Q ss_pred ----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHH
Q 044815 455 ----QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT--KETYTSMICGYLRDGNISSAVK 528 (675)
Q Consensus 455 ----~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~ 528 (675)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++.. |+ ...|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777652223356677777777777777777777777777743 33 2467777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 529 YFQRMNQIGCAPDNITYGALISG-LCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 529 ~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
+|++..+.. +.+...|...+.. +...|++++|..+|++.++. .|+ ...+..++..+.+.|+.++|..+|++....
T Consensus 378 ~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 777776632 1122223222222 33577778888888777763 343 455666777777778888888888776553
Q ss_pred -C-C----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 607 -L-W----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 607 -~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
+ + ...|...+....+.|+.+.+..+++++.+..|
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1 2 22677777777777888888888887777655
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-18 Score=172.80 Aligned_cols=301 Identities=13% Similarity=0.019 Sum_probs=166.3
Q ss_pred hcCCHHHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 308 KKGWTEKAFR-LFLKLVRSDNYKP--NVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFE 384 (675)
Q Consensus 308 ~~g~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 384 (675)
-.|++++|.+ .|.+..+.....| +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777776 6665443221112 24456677777777888888888888877753 235667777777788888888
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 385 RAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 385 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
+|...++++.+.. +.+..++..+...+...|++++|.+.++++.+..+. +...+..+... ..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~--------- 177 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh---------
Confidence 8888888777764 446777777888888888888888888887765422 11111111000 00
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP-TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI 543 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 543 (675)
. ..+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...|...|++++|+..++++.+.. +.+..
T Consensus 178 -~-~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 178 -G-AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred -h-hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0 000 00111122222 5555666666666555543211 34555556666666666666666666655532 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCC-----------h
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLW-----------I 609 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-----------~ 609 (675)
++..++..+...|++++|...++++++. .| +...+..++..|.+.|++++|...++++.. +.+ .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 5566666666666666666666666552 23 234555566666666666666666665433 112 4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
.+|..++.+|...|++++|..++++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHH
Confidence 5666677777777777777666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-16 Score=168.25 Aligned_cols=361 Identities=14% Similarity=0.055 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-C
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRS-------DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ-----G-L 363 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g-~ 363 (675)
..||.|...+...|++++|++.|++.++. ...+....+|+.+...|...|++++|...+++..+. + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34455555555555555555554443221 001122344555555555555555555555444321 0 0
Q ss_pred CC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 364 LP-NTNTYTSLIYGHCKV--GNFERAYDLMDLMGKEGCTPNIYAYNAIIDG---LCKKGRVQEAYELLKKAFQRELQADK 437 (675)
Q Consensus 364 ~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~ 437 (675)
.+ ...++..+..++... +++++|.+.|++..+.. +-+...+..+... +...++.++|++.+++.++.+ +.+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 01 123333333333222 23455555555544432 2223333333322 222344445555555544432 1223
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044815 438 ITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSM 513 (675)
Q Consensus 438 ~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 513 (675)
.++..+...+.. .++.++|...+++..... +.+..++..+...+...|++++|...++++.+..+ .+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHH
Confidence 333333322222 234445555555544432 23344455555555555555555555555554321 123334433
Q ss_pred HHHHHH-------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 514 ICGYLR-------------------DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGIS 574 (675)
Q Consensus 514 i~~~~~-------------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 574 (675)
..+|.. .+.+++|...+++..+.. +.+..++..+...+...|++++|+..|+++++....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 333321 123456666666665532 223345666677777777777777777777764332
Q ss_pred CCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 575 PCE--VTRVTLAY-EYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 575 p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
+.. ..+..++. .+...|+.++|+..|++..+ .++...+. +..+.+..++++.++.+|. +..+|..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~-~~~~~~~L 436 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGA-DSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC--CTTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 211 11222332 23456777777777776544 22221111 1223445566666666776 66777777
Q ss_pred HHHHHhcCchhHHHHHHHHHHh
Q 044815 651 KNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 651 ~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+.+|...|++++|.+.++++++
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHCC-----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777777765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=175.36 Aligned_cols=265 Identities=11% Similarity=0.023 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF 482 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 482 (675)
..+..+...+.+.|++++|...|+++++.. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666666666666666666666543 3345566666666666666666666666666553 33466666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 044815 483 CRQKKMKESEKFFQEAITAGLF---------PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCA-PDNITYGALISGL 552 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~ 552 (675)
...|++++|...|+++.+.... .....+..+...+...|++++|+..++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6667777777776666653210 01223334566777788888888888887774311 1467777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
...|++++|...++++++. .| +..++..++.+|.+.|++++|+..++++.. +.+...|..++.+|.+.|++++|+
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888773 33 356677788888888888888888887654 335667788888888888888888
Q ss_pred HHHHHHhcCCCCC-----------CHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 630 LFFHKLLGKDQNV-----------DRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 630 ~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
..|+++++..|.. +..+|..++.++...|+.+.|.+..++.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 8888887765431 24678888888888888888887776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=170.31 Aligned_cols=379 Identities=12% Similarity=0.080 Sum_probs=168.7
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHH
Q 044815 200 ELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQ 279 (675)
Q Consensus 200 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~ 279 (675)
+.|+.++|.++++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+... |++++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~---g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS---GNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC---CCHHH
Confidence 5667788888887772 2347888888888888888888888652 4666777777777765 67888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044815 280 AFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMK 359 (675)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 359 (675)
|+..++..++. .+++.+.+.++.+|.+.|+++++.+++. .|+..+|+.++..|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 88866666553 3456777788888888888888776663 266678888888888888888888888866
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044815 360 EQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKIT 439 (675)
Q Consensus 360 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 439 (675)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +...+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence 35778888888888888888888877 2678888888888888888888554433 2233333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHhHHH
Q 044815 440 YTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ--KKMKESEKFFQEAITAGLFP------TKETYT 511 (675)
Q Consensus 440 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~ 511 (675)
...++..|.+.|++++|+.+++...... +-....|+-|..+|++- +++.+..+.|..- .+++| +...|.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHH
Confidence 4567788888888888888888887665 55677777777777653 3444444444321 12222 466788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIG-----------CAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR 580 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 580 (675)
.+.-.|...++++.|....-+-.... -..+...|-..+.-|.. ....++.-+...+...+.+
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~----- 359 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDH----- 359 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCH-----
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCc-----
Confidence 88888999999998876432211100 01233344444444441 1122222222222211221
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFH 633 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (675)
...+..+.+.|.+.-+..+++.++......+-.++-..|...++++.-+...+
T Consensus 360 ~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 360 TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22345567778887777888777766666666677778888888876554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-16 Score=165.93 Aligned_cols=385 Identities=11% Similarity=-0.047 Sum_probs=228.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHC-----C--CCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--
Q 044815 221 ADASSYKLMVVAYCRMGRVTEADRWLSAMLDR-----G--AIL-DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK-- 290 (675)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~~-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-- 290 (675)
.....||.|...+...|++++|++.|++..+. + ..| ...+|+.+...+... |++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~---g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM---GRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHhH
Confidence 34667888999999999999999999887642 1 122 345677777777776 6788887777766542
Q ss_pred ---C-CC-CChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHH
Q 044815 291 ---G-WK-PNVYTHTVLIDGLCKK--GWTEKAFRLFLKLVRSDNYKPNVHTYTAMISG---YCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 291 ---~-~~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~ 360 (675)
+ .. ....++..+..++.+. +++++|++.|++.++.. +.+...+..+... +...++.++|++.+++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1 01 1234555555555543 45777888877776643 2233344444333 3345666777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 361 QGLLPNTNTYTSLIYGHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQAD 436 (675)
Q Consensus 361 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 436 (675)
... .+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...++++.+.. +.+
T Consensus 204 l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 204 LNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp HCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred cCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 422 245555555444443 345667777777766654 4456677777777777777777777777777653 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
..++..+...|...+.... ... . ..........+..+.|...++++.+... .+...+..+...
T Consensus 281 ~~~~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~ 343 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHH
Confidence 4555555544432211100 000 0 0000111122346788888888887653 456788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDN--ITYGALIS-GLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
|...|++++|+..|++..+....+.. ..+..+.. .....|++++|+..|++.++ +.|+....... .
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------K 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------H
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------H
Confidence 99999999999999999885432221 12333333 24578999999999999998 66665332222 2
Q ss_pred HHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 594 ATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 594 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+.+++++... +.+..+|..++.+|...|++++|++.|+++++.++.
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334445555432 456788999999999999999999999999999875
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-17 Score=163.04 Aligned_cols=261 Identities=9% Similarity=-0.023 Sum_probs=172.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 344444455555555555555554432 2244444455555555555555555555555442 23445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSM--------------IC-GYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
|++++|.+.++++.+... .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 555555555555555421 111222222 22 3667788888888888887753 335778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
.+...|++++|...++++++. .| +...+..++..|...|++++|...++++.+ +.+...|..++..+.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 888888888888888888874 34 356677888888889999999988888655 3456778888999999999999
Q ss_pred HHHHHHHHhcCCCCC-----------CHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 628 AALFFHKLLGKDQNV-----------DRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 628 A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
|...++++++..|.. +..++..++.++...|++++|.++++++++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999988877663 577888999999999999999988876554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=156.10 Aligned_cols=270 Identities=10% Similarity=0.051 Sum_probs=195.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNI--YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAET 453 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 453 (675)
-....|+++.|+...+..... .|+. .....+.++|...|++++|+..++. ..+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345668888888877765543 2332 3445667888888888888876644 2355667777888888888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 454 KQALGLFCRMVKAGLNP-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 454 ~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
++|++.++++...+..| +...+..+...+...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887765434 566677777888888888888888876 35777888888888888888999888888
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CC
Q 044815 533 MNQIGCAPDNITY---GALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KL 607 (675)
Q Consensus 533 m~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 607 (675)
+.+. .|+.... ..++..+...|++++|..+|+++++.. +.+...++.++.+|.+.|++++|...++++.. +.
T Consensus 156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8875 3553311 123334445688999999999988752 23556778888889999999999999888654 44
Q ss_pred ChhhHHHHHHHHHccCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 044815 608 WIRTVNTLIRKLCSEKRVGM-AALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
+..++..++..+...|+.++ +.++++++++.+|. ++.+.. ...+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHHH----HHHHHHHHHHHHH
Confidence 67788888888888998875 57888999999887 665443 3445555555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-17 Score=165.27 Aligned_cols=274 Identities=11% Similarity=-0.003 Sum_probs=144.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+...+..+...+.+.|++++|.+.|+++++.. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34456667777777777777777777776543 3456667777777777777777777777766642 22466666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNI-YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAET 453 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 453 (675)
..|...|++++|...++++.+.. |+. ..+..+. .....+..+...+...|++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhH
Confidence 66777777777777776666542 111 1111110 0011122234444444555
Q ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 454 KQALGLFCRMVKAGLN-PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 454 ~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
++|+..++++.+.... ++..++..+...+...|++++|.+.|+++.+... .+..+|..+..+|...|++++|+..+++
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554443211 1344555555555555555555555555554422 2345555555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 044815 533 MNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-------------CEVTRVTLAYEYCKQGDSATAMII 599 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~ 599 (675)
+.+.. +.+..++..+..+|...|++++|...|+++++. .| +...+..+..++...|+.+.|.+.
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 55531 122455555555566666666666666655542 11 134455566666666666666555
Q ss_pred HHH
Q 044815 600 LES 602 (675)
Q Consensus 600 ~~~ 602 (675)
.++
T Consensus 350 ~~~ 352 (365)
T 4eqf_A 350 NLG 352 (365)
T ss_dssp HTT
T ss_pred HHh
Confidence 543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-17 Score=157.71 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=206.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044815 409 IDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKM 488 (675)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 488 (675)
++-....|+++.|+..+++.....+.........+.++|...|++++|+..++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345567899999999998765432222234556778999999999999987654 2366788889999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 489 KESEKFFQEAITAGLFP-TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 489 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999876545 566677788999999999999999987 35778899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 568 MIGKGISPCEVTRVTL----AYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 568 ~~~~g~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+. .|+.. ...+ +..+...|++++|..+|+++.. +.+...|+.++.++.+.|++++|...|+++++.+|.
T Consensus 156 ~~~~--~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQ--DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHH--CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhh--CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9984 46543 2222 2344456899999999999866 457788999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHhcCchhH-HHHHHHHHHh
Q 044815 642 VDRVSLAALKNACYESNKYAL-FSDLSQRIAE 672 (675)
Q Consensus 642 p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 672 (675)
+..++..++.++...|+.++ +.++++++++
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999976 5788888875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-18 Score=167.91 Aligned_cols=281 Identities=14% Similarity=0.176 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
|++++|.+.++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66788888887772 2347788888888888888888887542 5666788888888888888888886
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 355 LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ 434 (675)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 434 (675)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 6666553 4456777788888888888888777764 356678888888888888888888888865
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 514 (675)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|+..|+++.|...... +...+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 36788888888888888888888877 2677888888888888888888555443 223444455677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ--SKLDEACQFYESMIGKGISP------CEVTRVTLAYE 586 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~ 586 (675)
..|.+.|++++|+.+++...... +-....|+.+.-+|++- ++..+.++.|..-+ +++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888876543 33456677776666654 23333333333211 2333 23345667778
Q ss_pred HHHcCCHHHHHHHH
Q 044815 587 YCKQGDSATAMIIL 600 (675)
Q Consensus 587 ~~~~g~~~~A~~~~ 600 (675)
|.+-++++.|....
T Consensus 292 y~~~~e~d~A~~tm 305 (449)
T 1b89_A 292 YDKYEEYDNAIITM 305 (449)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHhhchHHHHHHHH
Confidence 88888888776644
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-16 Score=153.94 Aligned_cols=228 Identities=10% Similarity=0.015 Sum_probs=108.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044815 337 AMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416 (675)
Q Consensus 337 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 416 (675)
.+...+...|++++|..+|+++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 333444444444444444444443311 134444444444444455555555554444432 233444455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 417 RVQEAYELLKKAFQRELQADKITYTIL--------------LS-EHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 417 ~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+...
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 555555555555443211 11111111 11 2445555566666665555543 2345555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 5556666666666655555421 234455555555555555555555555555432 12344555555555555555555
Q ss_pred HHHHHHHHh
Q 044815 562 CQFYESMIG 570 (675)
Q Consensus 562 ~~~~~~~~~ 570 (675)
...++++++
T Consensus 260 ~~~~~~a~~ 268 (327)
T 3cv0_A 260 AKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-18 Score=180.36 Aligned_cols=152 Identities=12% Similarity=0.120 Sum_probs=113.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVR--SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTS 372 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 372 (675)
-..+||+||++||+.|++++|.++|.+|.+ ..|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456888888888888888888888877643 246788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 044815 373 LIYGHCKVGN-FERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQAD------KITYTILLS 445 (675)
Q Consensus 373 li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~ 445 (675)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. ..++.++++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 8888888887 477888888888888888888888888765553 333333333 2233333 344455566
Q ss_pred HHHhcC
Q 044815 446 EHLKQA 451 (675)
Q Consensus 446 ~~~~~~ 451 (675)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-15 Score=145.28 Aligned_cols=224 Identities=15% Similarity=0.087 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGL--NPD----IHAY 475 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~ 475 (675)
...+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|+..+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556667777777777777777777777665 5666777777777777777777777777665421 111 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCK 554 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 554 (675)
..+...+...|++++|...|+++.+.. |+. ..+...|++++|...++++... .| +...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 666667777777777777777766642 342 2344556666666666666653 23 23455666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
.|++++|...++++++... .+...+..++..|.+.|++++|...++++.. +.+...|..++..+.+.|++++|...+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666666665321 1344555666666666666666666666543 234555666666666666666666666
Q ss_pred HHHhcCC
Q 044815 633 HKLLGKD 639 (675)
Q Consensus 633 ~~~~~~~ 639 (675)
+++++..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 6666655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=177.50 Aligned_cols=122 Identities=17% Similarity=0.270 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 044815 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMK---EQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAY 405 (675)
Q Consensus 329 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 405 (675)
..-..|||++|++||+.|++++|.++|++|. ..|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446799999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044815 406 NAIIDGLCKKGRV-QEAYELLKKAFQRELQADKITYTILLSEHLKQ 450 (675)
Q Consensus 406 ~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 450 (675)
|++|+++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999984 78999999999999999999999988755543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=157.22 Aligned_cols=370 Identities=13% Similarity=0.043 Sum_probs=213.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-----
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWT---EKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEE----- 346 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----- 346 (675)
|++++|+++|++..+.| +...+..|...|...|+. ++|.+.|.+..+. +...+..+...+...+
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCc
Confidence 56666666666665554 333444455555556666 6777776666531 3444555555444433
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 347 KMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNF---ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYE 423 (675)
Q Consensus 347 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 423 (675)
++++|+..|++..+.|... .+..|...|...+.. .++.+.+....+.| +......+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 5667777777776654332 444455555544332 23444455544444 33455566666666665444443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 044815 424 LLKKAFQRELQADKITYTILLSEHLKQA---ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ----KKMKESEKFFQ 496 (675)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~ 496 (675)
....+.+.-...+...+..+...|...| +.++|+..|++..+.| .++...+..|...|... +++++|.++|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3222222212223336677777777777 7778888888877776 44555556666666544 67888888888
Q ss_pred HHHHCCCCCCHhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 044815 497 EAITAGLFPTKETYTSMICG-Y--LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS-----KLDEACQFYESM 568 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~ 568 (675)
+.. . -+...+..|... | ...+++++|+.+|++..+.| +...+..+...|. .| ++++|...|++.
T Consensus 242 ~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 776 3 345566666665 3 45778888888888887765 5666666776666 44 888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCC
Q 044815 569 IGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 569 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 640 (675)
. .| +......|+..|.. ..+.++|..+|++.....+......|+..|.. ..+.++|..+|+++.+.|.
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7 33 45667777777766 34788888888888777777777777777764 4578888888888888875
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 641 NVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 641 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
. +.......+......++.++|.+++++..+
T Consensus 390 ~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 P-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp H-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4 333333333333445566777777766554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-14 Score=136.42 Aligned_cols=226 Identities=12% Similarity=0.031 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044815 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYT 476 (675)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 476 (675)
+..++..+...+...|++++|...|++..+ ..+...+..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 566677777777777788888877777776 2345566667777777 777777777777777664 566677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044815 477 TLIAAFCR----QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGAL 548 (675)
Q Consensus 477 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 548 (675)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777653 56667777777777 777777777777777644 45556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHH
Q 044815 549 ISGLCK----QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLC 620 (675)
Q Consensus 549 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 620 (675)
...|.. .+++++|...|++..+.+ +...+..++..|.. .+++++|...+++..+..+...+..++..|.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666666 677777777777777643 34566667777777 7777777777777666555666666777777
Q ss_pred c----cCCHHHHHHHHHHHhcCCCC
Q 044815 621 S----EKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 621 ~----~g~~~~A~~~~~~~~~~~~~ 641 (675)
+ .+++++|+++|+++++.++.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 6 67777777777777776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=139.56 Aligned_cols=197 Identities=13% Similarity=0.025 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGAL 548 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 548 (675)
+++...+..+...+.+.|++++|...|+++++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34556666777777777777777777777776543 356667777777777777777777777777642 2235567777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHH
Q 044815 549 ISGLCKQ-----------SKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTL 615 (675)
Q Consensus 549 ~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 615 (675)
..++... |++++|+..+++.++ +.|+ ...+..++..|...|++++|+..|++... ..+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 7777777 888888888888887 4454 45667788888888888888888888644 2556678888
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
+.+|...|++++|+..|+++++.+|. +...+..++.++...|++++|.+.++++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88999999999999999999999888 8888999999999999999999888765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-15 Score=156.68 Aligned_cols=346 Identities=12% Similarity=0.007 Sum_probs=240.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 301 VLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKM---NRAEMLLERMKEQGLLPNTNTYTSLIYGH 377 (675)
Q Consensus 301 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 377 (675)
.+...+.+.|++++|++.|.+..+.+ +...+..+...|...|+. ++|...|++..+. +...+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 36677888999999999999987753 334455566666777887 9999999998864 555566666655
Q ss_pred HhcC-----CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044815 378 CKVG-----NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQ---EAYELLKKAFQRELQADKITYTILLSEHLK 449 (675)
Q Consensus 378 ~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 449 (675)
...+ ++++|...|++..+.|. + ..+..|...|...+..+ ++.+.+......| +...+..+...|..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 5554 78999999999999773 2 36777888888766544 3455555555443 35566777788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----CC
Q 044815 450 QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK---KMKESEKFFQEAITAGLFPTKETYTSMICGYLRD----GN 522 (675)
Q Consensus 450 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~ 522 (675)
.+.++++......+.+.-...++..+..|...|...| +.++|.+.|++..+.|. ++...+..|...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 7755444443322222211223337888999999999 99999999999999875 5666667777777654 79
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISG-L--CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQG-----DSA 594 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~ 594 (675)
+++|+.+|++.. .| +...+..+... + ...+++++|...|++..+.| +......|+..|. .| +.+
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 33 45566666666 4 46899999999999999977 5678888888887 55 999
Q ss_pred HHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCchhHHHHH
Q 044815 595 TAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE----SNKYALFSDL 666 (675)
Q Consensus 595 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 666 (675)
+|.++|++.. +.+...+..|+..|.. ..++++|..+|+++.+.|. ......|+..|.. ..+.++|..+
T Consensus 305 ~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 305 AAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9999999988 8888889999988877 4499999999999998874 4567778887764 5689999999
Q ss_pred HHHHHhc
Q 044815 667 SQRIAEG 673 (675)
Q Consensus 667 ~~~~~~~ 673 (675)
++++.+.
T Consensus 381 ~~~A~~~ 387 (452)
T 3e4b_A 381 SQLAKAQ 387 (452)
T ss_dssp HHHHHTT
T ss_pred HHHHHHC
Confidence 9998763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-15 Score=140.39 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HhHHHH
Q 044815 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF--PT----KETYTS 512 (675)
Q Consensus 439 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 512 (675)
.+..+...+...|++++|+..++++.+.. .+...+..+..++...|++++|...++++.+.... ++ ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555555555555555555555544 44455555555555555555555555555443210 11 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQG 591 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 591 (675)
+...|...|++++|...++++.+. .|+. ..+...|++++|...++++.+ ..|+ ...+..++..|...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 555555555555555555555542 2332 123334445555555555554 2222 233344555555555
Q ss_pred CHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 592 DSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 592 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
++++|...++++.. +.+...|..++..+.+.|++++|+..++++++.+|. +...+..++.++...|++++|.+.+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555555555433 223444555555555555555555555555555544 455555555555555555555555555
Q ss_pred HHh
Q 044815 670 IAE 672 (675)
Q Consensus 670 ~~~ 672 (675)
+++
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-13 Score=134.06 Aligned_cols=221 Identities=11% Similarity=0.043 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR----QKKMKESEKFFQEAITAGLFPTKETYTS 512 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 512 (675)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344445555555555555555555555552 233445555555555 555555555555555543 4455555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 513 MICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK----QSKLDEACQFYESMIGKGISPCEVTRVTLA 584 (675)
Q Consensus 513 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 584 (675)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..++
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555555532 44455555555555 555555555555555533 234444555
Q ss_pred HHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 585 YEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 585 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
..|.. .+++++|...+++..+..+...+..++..|.. .+++++|+..|+++++.++ ...+..++.+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHc
Confidence 55555 55555555555555544444555555555555 5555555555555555532 3445555555555
Q ss_pred ----cCchhHHHHHHHHHHh
Q 044815 657 ----SNKYALFSDLSQRIAE 672 (675)
Q Consensus 657 ----~g~~~~A~~~~~~~~~ 672 (675)
.+++++|.++++++++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHH
Confidence 5555555555555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-15 Score=143.20 Aligned_cols=243 Identities=10% Similarity=-0.064 Sum_probs=165.5
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 415 KGRVQEAYELLKKAFQREL---QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKES 491 (675)
Q Consensus 415 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (675)
.|++++|+..++++.+... +.+..++..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566777777777665422 1234556666777777777777777777776653 34567777777777777888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 492 EKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
.+.|+++.+... .+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888877777542 35667777778888888888888888887764 354444444444556668888888888777663
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC------ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 572 GISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKL------WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 572 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
. |+......++..+...++.++|...+++..... +...|..++..+.+.|++++|...|+++++.+|. +..
T Consensus 174 ~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NFV 250 (275)
T ss_dssp S--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TCH
T ss_pred C--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hHH
Confidence 2 222233346666777777788888887765431 2467888999999999999999999999998875 433
Q ss_pred HHHHHHHHHHhcCchhHHHHHH
Q 044815 646 SLAALKNACYESNKYALFSDLS 667 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~ 667 (675)
..+.++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3366788889999988775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-14 Score=136.72 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 044815 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNP--DIHAYTTLIAA 481 (675)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~ 481 (675)
.+......+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++..+....+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556667777777888888877777653 2344467777777778888888888887777632111 23457788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+...|++++|.+.|+++.+... .+...|..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887643 356788888889999999999999999887752 33466777777344455699999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhhC----CC------hhhHHHHHHHHHccCCHHH
Q 044815 562 CQFYESMIGKGISPC-EVTRVTLAYEYCKQGD---SATAMIILESLDKK----LW------IRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~----~~------~~~~~~l~~~~~~~g~~~~ 627 (675)
...|+++++ ..|+ ...+..++..+...|+ .++|...++++.+. ++ ...|..++..|.+.|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988 4454 4666778888888888 77788888876541 33 2467889999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 628 AALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 628 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
|+..|+++++.+|. |...+..+.......+
T Consensus 240 A~~~~~~al~~~p~-~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPT-NKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHC-------
T ss_pred HHHHHHHHHhcCcc-HHHHHHHhhhhhcccc
Confidence 99999999999998 8888887777665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-14 Score=131.17 Aligned_cols=192 Identities=14% Similarity=-0.013 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044815 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGY 517 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 517 (675)
..+..+...+...|++++|+..+++.++.. +.+...+..+...+.+.|++++|...++++++..+ .+...+..+...+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 334444444444444444444444444432 22344444444444444555555555544444321 2334444444444
Q ss_pred HHc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044815 518 LRD-----------GNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAY 585 (675)
Q Consensus 518 ~~~-----------g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 585 (675)
... |++++|+..+++..+. .| +...+..+..++...|++++|+..|+++++.. .+...+..++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 444 6677777777766663 34 35566666667777777777777777776644 45566666777
Q ss_pred HHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 586 EYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
+|...|++++|+..++++.. +.+...+..++..+.+.|++++|+..+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777776544 335566677777777777777777777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=131.17 Aligned_cols=201 Identities=13% Similarity=0.051 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3455555666666666666666666665543 33455566666666666666666666666655432 245555556666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 594 (675)
|...|++++|..+++++.+.+..|+ ...+..+...+...|++++|...++++++.. | +...+..++..|.+.|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666554222332 3455555555666666666666666665522 2 2344455555666666666
Q ss_pred HHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 595 TAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 595 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+|...++++.. +.+...+..++..+.+.|++++|.++++++++..|.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 66666655543 223444555555555666666666666666555554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=139.06 Aligned_cols=248 Identities=10% Similarity=0.062 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE-TKQALGLFCRMVKAGLNPDIHAYTTLIA 480 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li~ 480 (675)
...|..+...+.+.|++++|+..++++++.. +.+...|+.+..++...|+ +++|+..++++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3455666666666777777777777776653 3355666667777777775 777777777777654 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 044815 481 AFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK-QSKLD 559 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~ 559 (675)
++...|++++|...|+++++... -+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 77777777777777777777643 366777777777777788888888888777743 2246677777777777 55546
Q ss_pred HH-----HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHhh-CCChhhHHHHHHHHHccC-------
Q 044815 560 EA-----CQFYESMIGKGISPC-EVTRVTLAYEYCKQG--DSATAMIILESLDK-KLWIRTVNTLIRKLCSEK------- 623 (675)
Q Consensus 560 ~A-----~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g------- 623 (675)
+| +..|+++++ +.|+ ...+..++..|.+.| ++++|++.++++.. +.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 477777777 4454 356666777777777 57778777777722 234556777777777753
Q ss_pred --CHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHh
Q 044815 624 --RVGMAALFFHKL-LGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 624 --~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~ 656 (675)
..++|+++|+++ ++.+|. ....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH
Confidence 258888888888 788876 67777777766554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=138.49 Aligned_cols=227 Identities=9% Similarity=0.012 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK-MKESEKFFQEAITAGLFPTKETYTSMIC 515 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 515 (675)
...|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|...|+++++... .+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4567888889999999999999999999875 4578899999999999997 9999999999999764 47889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH-cCCH
Q 044815 516 GYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCK-QGDS 593 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~-~g~~ 593 (675)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++ +.|+ ...++.++.+|.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999853 33578999999999999999999999999999 4454 5778889999999 6665
Q ss_pred HHH-----HHHHHHHhh--CCChhhHHHHHHHHHccC--CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC------
Q 044815 594 ATA-----MIILESLDK--KLWIRTVNTLIRKLCSEK--RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN------ 658 (675)
Q Consensus 594 ~~A-----~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 658 (675)
++| +..+++... +.+...|+.+...+.+.| ++++|++.++++ +.++. +...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccc
Confidence 777 477877654 457788999999999988 699999999998 77777 8899999999999975
Q ss_pred --c-hhHHHHHHHHH
Q 044815 659 --K-YALFSDLSQRI 670 (675)
Q Consensus 659 --~-~~~A~~~~~~~ 670 (675)
+ +++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 3 58999999998
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-14 Score=134.19 Aligned_cols=232 Identities=11% Similarity=0.009 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHH
Q 044815 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT--KETYTSMIC 515 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~ 515 (675)
..+......+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567788999999999999999999874 33556888899999999999999999999998432222 334889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 044815 516 GYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 594 (675)
.+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++++++. .|+ ...+..++..+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998853 335678999999999999999999999999884 454 466677773455566999
Q ss_pred HHHHHHHHHhh--CCChhhHHHHHHHHHccCC---HHHHHHHHHHHhcCC---CCCC----HHHHHHHHHHHHhcCchhH
Q 044815 595 TAMIILESLDK--KLWIRTVNTLIRKLCSEKR---VGMAALFFHKLLGKD---QNVD----RVSLAALKNACYESNKYAL 662 (675)
Q Consensus 595 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~ 662 (675)
+|.+.++++.+ +.+...+..++..+...|+ +++|+..++++++.. +.++ ..+|..++..|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999766 3456778888888888888 888999999988764 3321 2578889999999999999
Q ss_pred HHHHHHHHHhc
Q 044815 663 FSDLSQRIAEG 673 (675)
Q Consensus 663 A~~~~~~~~~~ 673 (675)
|.+.++++++.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999763
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=149.17 Aligned_cols=276 Identities=12% Similarity=0.030 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNI----YAYNAIIDGLCKKGRVQEAYELLKKAFQR----E-LQADKI 438 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 438 (675)
..+..+...+...|++++|...++++.+.+ +.+. ..+..+...|...|++++|...++++.+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 334455556667777777777777766653 2222 35666666677777777777777665532 0 011223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCC
Q 044815 439 TYTILLSEHLKQAETKQALGLFCRMVKA----G-LNPDIHAYTTLIAAFCRQKK----------MKESEKFFQEAITAGL 503 (675)
Q Consensus 439 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~ 503 (675)
.+..+...+...|++++|...+++..+. + .+....++..+...+...|+ .++|...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~--------- 198 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA--------- 198 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence 4455555555555555555555554432 0 01112234444444444444 0000000
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 044815 504 FPTKETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGIS-PC- 576 (675)
Q Consensus 504 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~- 576 (675)
+++|+..+++..+. +..+ ...++..+...+...|++++|...+++.++.... ++
T Consensus 199 -------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 199 -------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 44444444443221 1001 1224445555555555555555555555441000 01
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC----
Q 044815 577 ---EVTRVTLAYEYCKQGDSATAMIILESLDKK----L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN---- 641 (675)
Q Consensus 577 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---- 641 (675)
...+..++..|...|++++|...+++.... . ....+..++..+...|++++|..+++++++....
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 113444555566666666666655554321 1 1234555666666666666666666665544221
Q ss_pred -CCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 642 -VDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 642 -p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
....++..++.+|...|++++|.++++++++
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0123555666666666666666666666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-11 Score=127.22 Aligned_cols=442 Identities=10% Similarity=0.023 Sum_probs=271.4
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCC---H
Q 044815 201 LGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGS---I 277 (675)
Q Consensus 201 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---~ 277 (675)
....++.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|+++... .......|...+..-.+. ++ +
T Consensus 45 ~~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~---~~~~~~ 119 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDK---MEELDA 119 (679)
T ss_dssp -CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC-----CCCH
T ss_pred ccCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh---CCcchH
Confidence 334555666666666654 569999999999999999999999999999986 344666777777776665 56 9
Q ss_pred HHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHhcCCC-CCC-HHHHHHHHHHHHh--
Q 044815 278 KQAFELLEEMVRKG-WKPNVYTHTVLIDGLCKKGWT--------EKAFRLFLKLVRSDNY-KPN-VHTYTAMISGYCK-- 344 (675)
Q Consensus 278 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~-~~~-~~~~~~li~~~~~-- 344 (675)
+.+..+|++.+... ..|++..|...+....+.++. +...++|+..+..-|. .++ ...|...+.....
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 99999999988763 137888888888776666553 3345788888776666 453 5677777765432
Q ss_pred -------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044815 345 -------EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKV-GNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416 (675)
Q Consensus 345 -------~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 416 (675)
.++++.+..+|++++......-..+|..... +.+. +. ..+.+++.+. ..
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~-~~a~~~~~e~---------------------~~ 256 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQ-LTARRHIGEL---------------------SA 256 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCT-TTHHHHHHHH---------------------HH
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCc-chHHHHHHHh---------------------hH
Confidence 3456778888888875311111233332221 1111 11 0011111110 11
Q ss_pred CHHHHHHHHHHHHh--CCC----C-----------C--C------HHHHHHHHHHHHhcC-------CHHHHHHHHHHHH
Q 044815 417 RVQEAYELLKKAFQ--REL----Q-----------A--D------KITYTILLSEHLKQA-------ETKQALGLFCRMV 464 (675)
Q Consensus 417 ~~~~A~~~~~~~~~--~~~----~-----------~--~------~~~~~~li~~~~~~~-------~~~~A~~~~~~m~ 464 (675)
.++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++.+
T Consensus 257 ~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL 336 (679)
T 4e6h_A 257 QYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA 336 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH
Confidence 22223333322111 000 0 0 0 123444443322221 1234456677766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESE-KFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG------ 537 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------ 537 (675)
.. ++-....|...+..+...|+.++|. ++|++.... ++.+...|-.++....+.|++++|..+|+++.+..
T Consensus 337 ~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 337 QH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 65 3446777777777777777777775 888877764 33455566677777777888888888888776531
Q ss_pred ---CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 044815 538 ---CAPD------------NITYGALISGLCKQSKLDEACQFYESMIGK-GISPCEVTRVTLAYEYCKQG-DSATAMIIL 600 (675)
Q Consensus 538 ---~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~ 600 (675)
-.|+ ...|...+....+.|..+.|..+|+++++. +. .....|...+..-.+.| +.+.|.++|
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0131 235666677667777888888888888774 21 12234433333333443 478888888
Q ss_pred HHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 601 ESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV--DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 601 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+...+ +.+...|...+......|+.+.|..+|++++...+.+ ....|..++..-.+.|+.+.+.++.+++.+.
T Consensus 494 e~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 494 ELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87655 3455566777777777788888888888888776632 3456777777777788888888888887764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-14 Score=131.85 Aligned_cols=213 Identities=11% Similarity=0.103 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 3445555566666666666666666666543 33566666667777777777777777777666532 356667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 596 (675)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++... .+...+..++..|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776643 33466677777777777888888888877776321 2345666777778888888888
Q ss_pred HHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 044815 597 MIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC 654 (675)
Q Consensus 597 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 654 (675)
...++++.+ +.+...|..++..+.+.|++++|...++++++..|. +...+..+....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~ 237 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHH
Confidence 888877654 335667788888888888888888888888888887 666666555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-14 Score=145.51 Aligned_cols=303 Identities=13% Similarity=0.051 Sum_probs=161.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC
Q 044815 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN----TNTYTSLIYGHCKVGNFERAYDLMDLMGKE----GCTP 400 (675)
Q Consensus 329 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~ 400 (675)
......+......+...|++++|+..|+++.+.+.. + ...+..+...|...|++++|...+++..+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344555666667777777777777777777765222 2 245666667777777777777777765432 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHH
Q 044815 401 -NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ-AD----KITYTILLSEHLKQAE-------------TKQALGLFC 461 (675)
Q Consensus 401 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~-------------~~~A~~~~~ 461 (675)
...++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ .+++...
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~-- 162 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA-- 162 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH--
Confidence 1345556666666677777777666665532100 01 2234444444444444 0000000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA----GLF-PTKETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
+++|...+.+..+. +.. ....++..+...|...|++++|...+++..+.
T Consensus 163 --------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 163 --------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44444444443321 000 01234555555666666666666666655432
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 537 GC-APD----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 537 ~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
.. .++ ..++..+...+...|++++|...+++.++. +..+. ..++..++..|.+.|++++|...+++....
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 00 111 225556666666666777766666666541 11110 234455666667777777777766664331
Q ss_pred ----CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHhcCch
Q 044815 607 ----LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN-----VDRVSLAALKNACYESNKY 660 (675)
Q Consensus 607 ----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~ 660 (675)
++ ...+..++..|.+.|++++|..+++++++.... ....++..++.++...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11 335566667777777777777777766554211 1234566667777666655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-13 Score=127.14 Aligned_cols=197 Identities=10% Similarity=0.034 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044815 473 HAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGL 552 (675)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 552 (675)
..+..+...+...|++++|...|+++.+... .+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4455555556666666666666666655432 245555556666666666666666666655532 22445555556666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
...|++++|..+++++.+.+..|+ ...+..++..|.+.|++++|.+.++++.. +.+...+..++..+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666655323332 23445555566666666666666665443 223445555666666666666666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 630 LFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..++++++..+. +...+..++.++...|++++|.++++++++
T Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665554 555566666666666666666666665544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-13 Score=124.57 Aligned_cols=208 Identities=13% Similarity=0.015 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 514 (675)
.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 445667777778888888888888888877753 44567777777888888888888888887776542 3566777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 044815 515 CGYLRD-GNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQG 591 (675)
Q Consensus 515 ~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 591 (675)
..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++++. .|+ ...+..++..|.+.|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcC
Confidence 777888 888888888887776323343 456777777777888888888888877763 333 456667777777788
Q ss_pred CHHHHHHHHHHHhh--C-CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 592 DSATAMIILESLDK--K-LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 592 ~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
++++|...++++.. + .+...+..++..+...|+.++|..+++.+.+..|. +....
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~ 219 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEELQ 219 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHH
Confidence 88888877777544 3 45556666666677777777777777777766665 54443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.6e-14 Score=131.68 Aligned_cols=200 Identities=10% Similarity=0.018 Sum_probs=158.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALI 549 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 549 (675)
.....|..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3456778888889999999999999999998643 468889999999999999999999999998853 34678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
..+...|++++|...++++.+... .+...+..++..|.+.|++++|...++++.. +.+...+..++..+.+.|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999998432 2456778899999999999999999999765 3467788999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 628 AALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 628 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
|+..++++++..+. +..++..++.++...|++++|.+.++++++.
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999887 8899999999999999999999999998763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-12 Score=121.90 Aligned_cols=200 Identities=11% Similarity=0.058 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4445555555555555555555555555432 2334455555555555555555555555555542 2344555555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 482 FCRQ-KKMKESEKFFQEAITAGLFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLD 559 (675)
Q Consensus 482 ~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 559 (675)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 555555555555555211121 3445555555555555555555555555432 123445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 560 EACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 560 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
+|...++++++.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555555542210123333444444555555555555555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-14 Score=144.01 Aligned_cols=271 Identities=14% Similarity=0.071 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQAD---KITYTILLSEHLKQAETKQALGLFCRMVKA----GLNP-DIH 473 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~ 473 (675)
...+......+...|++++|...|+++.+...... ...+..+...+...|++++|...+++..+. +..| ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444444555555555555555555554321110 134445555555555555555555544322 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHHcCC--------------------HHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGL-FPT----KETYTSMICGYLRDGN--------------------ISSAVK 528 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 528 (675)
++..+...+...|++++|...++++.+... .++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 566677777777777777777776664310 011 3467778888888888 899998
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHH
Q 044815 529 YFQRMNQI----GCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGI-SPC----EVTRVTLAYEYCKQGDSATAMI 598 (675)
Q Consensus 529 ~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~ 598 (675)
.+++..+. +..|. ..++..+...+...|++++|...++++++... .++ ...+..++..|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88876542 11121 34688888999999999999999999886310 112 1366778999999999999999
Q ss_pred HHHHHhh----CCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-C----HHHHHHHHHHHHhcCchhHHHH
Q 044815 599 ILESLDK----KLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-D----RVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 599 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
.+++... .++ ..++..++..+...|++++|...++++++..+.. + ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998654 122 4567889999999999999999999988764321 2 5688899999999999999999
Q ss_pred HHHHHHh
Q 044815 666 LSQRIAE 672 (675)
Q Consensus 666 ~~~~~~~ 672 (675)
.++++++
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-11 Score=125.90 Aligned_cols=448 Identities=11% Similarity=0.024 Sum_probs=284.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---HHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR---VTEA 242 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A 242 (675)
.....+.+..|++.+..+ +.|..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|+ ++.+
T Consensus 45 ~~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp -CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 334556676777777776 689999999999999999999999999999986 56788899999998888898 9999
Q ss_pred HHHHHHHhHCC-CCCCHHHHHHHHHHHHhcCCC--C---CHHHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHHH------
Q 044815 243 DRWLSAMLDRG-AILDNATLTLLITAFCDKGFR--G---SIKQAFELLEEMVR-KGW-KPN-VYTHTVLIDGLC------ 307 (675)
Q Consensus 243 ~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~--~---~~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~------ 307 (675)
..+|++.+... ..|+...|...+.-..+.+.. + ..+.+.++|+.... .|. .++ ...|...+....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 99999998864 147888888888776665321 0 12344577777554 465 554 457777776544
Q ss_pred ---hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 308 ---KKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFE 384 (675)
Q Consensus 308 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 384 (675)
..++++.+.++|++.+... ...-..+|..... +.+.-+...+.+++.+. ..+++
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~ 259 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYM 259 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHH
Confidence 2445788999999887421 1111223332211 11110111111221111 11233
Q ss_pred HHHHHHHHHhh--cCC----C-----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCC
Q 044815 385 RAYDLMDLMGK--EGC----T-----------P-----N---IYAYNAIIDGLCKKG-------RVQEAYELLKKAFQRE 432 (675)
Q Consensus 385 ~A~~~~~~m~~--~g~----~-----------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~ 432 (675)
.|...+.++.+ .++ + | + ...|...+..--..+ ..+.+..+|++.+..
T Consensus 260 ~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~- 338 (679)
T 4e6h_A 260 NARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH- 338 (679)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-
Confidence 33333333211 011 0 0 0 123444443322221 123345667777765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------
Q 044815 433 LQADKITYTILLSEHLKQAETKQAL-GLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-------- 503 (675)
Q Consensus 433 ~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------- 503 (675)
++.....|...+..+...|+.++|. .++++.... ++.+...+..++...-+.|+++.|.++|+++++...
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3457777888888777888888886 888888764 355666677777777788888888888888775310
Q ss_pred -CCC------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 044815 504 -FPT------------KETYTSMICGYLRDGNISSAVKYFQRMNQI-GCAPDNITYGALISGLCKQ-SKLDEACQFYESM 568 (675)
Q Consensus 504 -~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 568 (675)
.|+ ..+|...+....+.|..+.|..+|.+..+. + ......|...+..-.+. ++++.|..+|+..
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 132 235777777777788888888888888764 2 11233343333333333 4588888888888
Q ss_pred HhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 569 IGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 569 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
++. .| +...+...+......|+.+.|..+|++.... + ....|..++..-.+.|+.+.+..+.+++.+..|+.
T Consensus 497 Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 497 LKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 874 23 3344456666677788888888888887653 2 23567888887888888888888888888888764
Q ss_pred C
Q 044815 643 D 643 (675)
Q Consensus 643 ~ 643 (675)
+
T Consensus 575 ~ 575 (679)
T 4e6h_A 575 N 575 (679)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-13 Score=131.53 Aligned_cols=217 Identities=10% Similarity=-0.023 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 346 EKMNRAEMLLERMKEQGLL---PNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAY 422 (675)
Q Consensus 346 ~~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 422 (675)
|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555543211 123344455555555555555555555555442 234455555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044815 423 ELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAG 502 (675)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 502 (675)
..|+++++.. +.+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555432 2234445555555555555555555555555432 222222222233344455555555555544432
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 503 LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-----NITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 503 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
. ++...+ .++..+...++.++|...+++..+.. |+ ...+..+...+...|++++|...|+++++
T Consensus 175 ~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 D-KEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp C-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 222222 24444445555555555555544321 11 23445555555555555555555555555
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-14 Score=138.75 Aligned_cols=269 Identities=14% Similarity=0.067 Sum_probs=156.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 372 SLIYGHCKVGNFERAYDLMDLMGKEGCTPN----IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.....+...|++++|...++++.+.. +.+ ...+..+...+...|++++|.+.+++..+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------------- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence 34444555556666666665555542 112 2344455555555555555555555543210
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHHcC
Q 044815 448 LKQAETKQALGLFCRMVKAGLN-PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-FPT----KETYTSMICGYLRDG 521 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g 521 (675)
...+.. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 000101 1123444555555555566665555555443210 011 225555566666666
Q ss_pred C--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 044815 522 N--------------------ISSAVKYFQRMNQI----GCAP-DNITYGALISGLCKQSKLDEACQFYESMIGK----G 572 (675)
Q Consensus 522 ~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g 572 (675)
+ +++|...+++..+. +..+ ...++..+...+...|++++|...++++++. +
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 6 66666666654331 1111 1235666777777888888888888877652 1
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-
Q 044815 573 ISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK----KLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV- 642 (675)
Q Consensus 573 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 642 (675)
..+ ....+..++..|...|++++|...+++... .++ ...+..++..+...|++++|..+++++++..+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 111 112556677788888888888888877543 111 4456778888888888888888888877653221
Q ss_pred C----HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 643 D----RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 643 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+ ..++..++.++...|++++|.+.++++++
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 44777888888999999999999888876
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=142.50 Aligned_cols=277 Identities=11% Similarity=0.027 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC-CCCH
Q 044815 332 VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNT----NTYTSLIYGHCKVGNFERAYDLMDLMGKE----GC-TPNI 402 (675)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~ 402 (675)
...+..+...+...|++++|+..|+++.+.+.. +. ..+..+...|...|++++|...+++..+. +. +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445666778889999999999999999986332 33 47888899999999999999999988653 11 2235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRE-----LQADKITYTILLSEHLKQAE-----------------TKQALGLF 460 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~-----------------~~~A~~~~ 460 (675)
.++..+...|...|++++|...++++.+.. ......++..+...+...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678889999999999999999999987541 12234577888889999999 77777777
Q ss_pred HHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 461 CRMVKA----GLN-PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF-PTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 461 ~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
++..+. +.. ....++..+...+...|++++|...+++..+.... .+..
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------- 260 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA-------------------------- 260 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH--------------------------
Confidence 665432 100 01223444444445555555555555444432100 0000
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---
Q 044815 535 QIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG----ISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK--- 606 (675)
Q Consensus 535 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 606 (675)
....++..+...|...|++++|...++++++.. ..+ ...++..++..|...|++++|...+++....
T Consensus 261 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 261 -----AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp -----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 001245555556666666666666666655411 000 1234455666666667776666666664331
Q ss_pred -C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 607 -L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 607 -~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
+ ....+..++..|.+.|++++|..+++++++...
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1 123556677777777777777777777766543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-13 Score=119.03 Aligned_cols=163 Identities=9% Similarity=-0.012 Sum_probs=74.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYE 586 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 586 (675)
..+|..+...|...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...++.+...... +...+..++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3344444444444444444444444444421 112334444444444444444444444444442111 12333334444
Q ss_pred HHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 044815 587 YCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
+...++++.|...+++... +.+...+..++..+.+.|++++|++.|+++++.+|. +..+|..++.+|.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 4444444444444444332 223344444555555555555555555555555554 4455555555555555555555
Q ss_pred HHHHHHHh
Q 044815 665 DLSQRIAE 672 (675)
Q Consensus 665 ~~~~~~~~ 672 (675)
+.++++++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=142.47 Aligned_cols=210 Identities=11% Similarity=0.036 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKM-KESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
+++++..++...... +.+...+..+...+...|++ ++|.+.|+++++... .+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554432 34666777777777777777 777777777776542 346677777777778888888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc--------CCH
Q 044815 532 RMNQIGCAPDNITYGALISGLCKQ---------SKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ--------GDS 593 (675)
Q Consensus 532 ~m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~--------g~~ 593 (675)
+..+. .|+...+..+...+... |++++|+..|+++++ +.|+ ...+..++.+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 77763 46667777777777777 888888888888877 3343 45667777777777 778
Q ss_pred HHHHHHHHHHhh--C---CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 594 ATAMIILESLDK--K---LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 594 ~~A~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
++|++.|++..+ + .+...|..++.+|...|++++|++.|+++++.+|. +...+..++.++...|++++|.+.++
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888887655 2 35667888888888888888888888888888887 77888888888888888888887554
Q ss_pred H
Q 044815 669 R 669 (675)
Q Consensus 669 ~ 669 (675)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=133.37 Aligned_cols=228 Identities=12% Similarity=-0.006 Sum_probs=150.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHhHHH
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKA----GLNP-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF-P-----TKETYT 511 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 511 (675)
....+...|++++|+..+++..+. +-.+ ...++..+...+...|++++|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666666543 1011 2345666777777777777777777766643100 1 134667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIGC-APD----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EVTRV 581 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 581 (675)
.+...|...|++++|...+++..+... .++ ..++..+..+|...|++++|...+++.++. +..|. ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777788888888888888877664210 112 236777888888888888888888888762 22132 35667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC----CC---hhhHHHHHHHHHccCC---HHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 582 TLAYEYCKQGDSATAMIILESLDKK----LW---IRTVNTLIRKLCSEKR---VGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
.++..|.+.|++++|...+++...- ++ ...+..+...+...|+ +++|+.++++. .. .......+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~-~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-ML-YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TC-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cC-HHHHHHHHHHHH
Confidence 7888888888888888888875431 12 2235667777888888 78888888775 11 111344677888
Q ss_pred HHHHhcCchhHHHHHHHHHHh
Q 044815 652 NACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 652 ~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+|...|++++|.+.++++++
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999988865
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-13 Score=132.79 Aligned_cols=281 Identities=13% Similarity=0.063 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CCH
Q 044815 332 VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN----TNTYTSLIYGHCKVGNFERAYDLMDLMGKE----GCT-PNI 402 (675)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~ 402 (675)
...+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566677888999999999999999986322 3 367888899999999999999999987543 211 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ-AD----KITYTILLSEHLKQAE-------------TKQALGLFCRMV 464 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~-------------~~~A~~~~~~m~ 464 (675)
.++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ .+++...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----- 158 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA----- 158 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-----
Confidence 56777788888888888888888876542100 11 1244444444554454 0000000
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA----G-LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGC- 538 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 538 (675)
+++|.+.+++..+. + .......+..+...+...|++++|...+++..+...
T Consensus 159 -----------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 159 -----------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 44444444433221 0 001133566666677777777777777776654210
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---
Q 044815 539 APD----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK--- 606 (675)
Q Consensus 539 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 606 (675)
.++ ..++..+...+...|++++|...+++.++. +..+. ..++..++..|...|++++|...+++....
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 011 236777778888888888888888887652 11111 345667888888999999999888876441
Q ss_pred -CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 607 -LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 607 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+ ..++..++..|.+.|++++|..+++++++....
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 346778899999999999999999999877543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-12 Score=130.75 Aligned_cols=231 Identities=13% Similarity=0.028 Sum_probs=165.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC----CCHHHHH
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQR----ELQA-DKITYTILLSEHLKQAETKQALGLFCRMVKAG--LN----PDIHAYT 476 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~----p~~~~~~ 476 (675)
....+...|++++|...+++..+. +..+ ...++..+...+...|++++|+..+++..+.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566777777777777777653 1111 23466777777777788888877777766531 11 1245678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITAGLF-PT----KETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAP-DNITYG 546 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~ 546 (675)
.+...|...|++++|...|+++.+.... ++ ..++..+...|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888888999999999998887753111 11 247888899999999999999999988762 2223 356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhhCC-ChhhHHHHHHH
Q 044815 547 ALISGLCKQSKLDEACQFYESMIGKGI---SPC-EVTRVTLAYEYCKQGD---SATAMIILESLDKKL-WIRTVNTLIRK 618 (675)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~ 618 (675)
.+...+.+.|++++|...+++.++... .|. ...+..++..|...|+ .++|+.++++....+ ....+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999999876210 121 1234567888888998 788888888774433 23467789999
Q ss_pred HHccCCHHHHHHHHHHHhcC
Q 044815 619 LCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~ 638 (675)
|.+.|++++|..+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=134.43 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQR-------ELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHA 474 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 474 (675)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...+++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE------ 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Confidence 445555666666666666666666665542 1122233444444555555555555555544443200
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHH
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI------GCAP-DNITYGA 547 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ 547 (675)
.............+..+...|...|++++|...++++.+. +..| ....+..
T Consensus 101 ----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 101 ----------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ----------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ----------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 0000000112234444455555555555555555544432 1111 1234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----------C-C-
Q 044815 548 LISGLCKQSKLDEACQFYESMIGK------GISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK----------L-W- 608 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~-~- 608 (675)
+...+...|++++|..+++++++. +..|. ..++..++..|.+.|++++|.+.++++... + .
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555666666666666655542 11221 123445555666666666666666554321 0 0
Q ss_pred -----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 609 -----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 609 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...+..+...+...+.+.+|...++++....+. +..++..++.+|.+.|++++|.++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112233334444566667777777777766665 677888889999999999999999888875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-11 Score=117.30 Aligned_cols=217 Identities=7% Similarity=-0.010 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 419 QEAYELLKKAFQRELQADKITYTILLSEHLK-------QAET-------KQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
++|..+|++++... +.+...|..++..+.. .|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 3455555555555542 3553 5666666666552112244455666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPT-KE-TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC-KQSKLDEA 561 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 561 (675)
.|++++|..+|+++++.. |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666532 22 22 55666666666666666666666665532 122333332222211 24666666
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----C--ChhhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 562 CQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK----L--WIRTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 562 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
..+|+++++. .| +...+..++..+.+.|+.++|..+|++.... | ....|..++..+.+.|+.++|..++++
T Consensus 189 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666552 23 2344455555555666666666666665441 1 233455555555566666666666666
Q ss_pred HhcCCCC
Q 044815 635 LLGKDQN 641 (675)
Q Consensus 635 ~~~~~~~ 641 (675)
+++..|.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 6655553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=110.53 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
+..+|..+...+.+.|++++|.+.|++.++..+ -+...+..+..+|.+.|++++|+..+++..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 566788888888888888888888888887653 367778888888888888888888888887643 334667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
.+...++++.|...+++..+. .|+ ...+..++..|.+.|++++|++.|++..+ +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888873 343 45667788888899999999998888655 3467788899999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 044815 628 AALFFHKLLGKDQN 641 (675)
Q Consensus 628 A~~~~~~~~~~~~~ 641 (675)
|+..|+++++.+|+
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-12 Score=139.84 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=135.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLA 584 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 584 (675)
...|+.|...|.+.|++++|+..|++..+. .|+ ..+|..+..+|.+.|++++|+..|+++++ +.|+ ...+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 567888888888888888888888888774 454 67788888888888888888888888888 4554 46778888
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhH
Q 044815 585 YEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYAL 662 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 662 (675)
.+|.+.|++++|++.|++..+ +.+...|+.++.+|.+.|++++|++.|+++++.+|+ +...+..++.++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888655 346778899999999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHHh
Q 044815 663 FSDLSQRIAE 672 (675)
Q Consensus 663 A~~~~~~~~~ 672 (675)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-12 Score=131.44 Aligned_cols=207 Identities=12% Similarity=0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 383 FERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRV-QEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 383 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
++++...+++..... +.+...+..+...+...|++ ++|.+.|+++++.. +.+...|..+...|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555444332 23455555555555555555 55555555555442 2234455555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc--------CCHH
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQ---------KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD--------GNIS 524 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 524 (675)
+..+. .|+...+..+...+... |++++|...|+++.+... .+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55543 23344455555555554 555555555555544321 2344444444444444 4445
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAP----DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMI 598 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 598 (675)
+|+..|++..+. .| +...|..+..+|...|++++|...|+++++ +.|+ ...+..+..++...|++++|++
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444442 22 344444444444444444444444444444 2222 2233344444444444444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-11 Score=123.07 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=141.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----CHhHHHH
Q 044815 444 LSEHLKQAETKQALGLFCRMVKAGL-NPD----IHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-FP-----TKETYTS 512 (675)
Q Consensus 444 i~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~-----~~~~~~~ 512 (675)
...+...|++++|+..+++..+... .++ ..++..+...|...|+++.|...+.+..+... .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345556666666666666554310 111 34566666677777777777777776654210 01 1345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQI----GCAP-DNITYGALISGLCKQSKLDEACQFYESMIG-----KGISPCEVTRVT 582 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 582 (675)
+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++.++ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 777777777777777777766542 1111 123566777778888888888888887776 3222 2456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC------C-ChhhHHHHHHHHHccCC---HHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 583 LAYEYCKQGDSATAMIILESLDKK------L-WIRTVNTLIRKLCSEKR---VGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
++..|.+.|++++|...+++...- + ....+..+...+...|+ +++|+.++++.. ........+..++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~ 344 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHH
Confidence 788888888888888888876541 1 12234556666667777 777777777621 11112346667888
Q ss_pred HHHhcCchhHHHHHHHHHHh
Q 044815 653 ACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 653 ~~~~~g~~~~A~~~~~~~~~ 672 (675)
.|...|++++|.+.++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-10 Score=113.45 Aligned_cols=162 Identities=13% Similarity=0.082 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPD-IH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 439 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
.|..++..+...|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++... .+...|...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3444444444444444444444444432 121 11 444444444444455555555544444321 122233222222
Q ss_pred HH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCC
Q 044815 517 YL-RDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG-ISPC--EVTRVTLAYEYCKQGD 592 (675)
Q Consensus 517 ~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~ 592 (675)
.. ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|+++++.. +.|+ ...+..++..+.+.|+
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 11 1355555555555554421 1134445555555555555555555555555531 2331 2334444455555555
Q ss_pred HHHHHHHHHHHh
Q 044815 593 SATAMIILESLD 604 (675)
Q Consensus 593 ~~~A~~~~~~~~ 604 (675)
.++|..+++++.
T Consensus 257 ~~~a~~~~~~a~ 268 (308)
T 2ond_A 257 LASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=127.93 Aligned_cols=247 Identities=15% Similarity=0.082 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 044815 366 NTNTYTSLIYGHCKVGNFERAYDLMDLMGKE-------GCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR------E 432 (675)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 432 (675)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888999999999999999999998873 22344677889999999999999999999988753 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044815 433 -LQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYT 511 (675)
Q Consensus 433 -~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 511 (675)
......++..+...+...|++++|...++++.+... .............+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHH
Confidence 122234555566666666666666666665544200 000000001123344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQI------GCAPD-NITYGALISGLCKQSKLDEACQFYESMIGK-------GISPCE 577 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~ 577 (675)
.+...+...|++++|+.+++++.+. +..|+ ..++..+..++...|++++|...++++++. ...+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4444555555555555555554432 11121 234555566666666666666666666541 011111
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 578 -------VTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 578 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
..+..+...+...+.+.+|...++..... ....++..++..|.+.|++++|.++|+++++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11122233344455666666666665542 2455678888889999999999999998876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-10 Score=118.76 Aligned_cols=268 Identities=15% Similarity=0.027 Sum_probs=161.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHH
Q 044815 372 SLIYGHCKVGNFERAYDLMDLMGKEGCTPNIY----AYNAIIDGLCKKGRVQEAYELLKKAFQRELQ-ADK----ITYTI 442 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 442 (675)
.....+...|++++|...+++.....-..+.. +++.+...+...|++++|...+++....... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445567788888888888876653222222 4556667777788888888888877643111 111 23455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHhHHH
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKA----GLN--P-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP----TKETYT 511 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~ 511 (675)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 666777788888888877776543 211 2 23455566777777788888888887776542211 124566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIGCAPD--NITYG----ALISGLCKQSKLDEACQFYESMIGKGISPC---EVTRVT 582 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ 582 (675)
.+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++..+....+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 667777777888888887777654311111 11111 222336677788888777777765322111 123455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC----C---C-hhhHHHHHHHHHccCCHHHHHHHHHHHhcCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDKK----L---W-IRTVNTLIRKLCSEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~----~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (675)
++..+...|++++|...+++.... + . ...+..+..++...|+.++|...+++++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 667777777777777777765431 1 1 1244555666777777777777777766553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-11 Score=120.87 Aligned_cols=231 Identities=14% Similarity=0.028 Sum_probs=152.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-CHHHHH
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQREL-QA----DKITYTILLSEHLKQAETKQALGLFCRMVKAG--L---NP-DIHAYT 476 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~---~p-~~~~~~ 476 (675)
....+...|++++|...|+++.+... .+ ...++..+...+...|++++|+..+++..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44455667777777777777664311 11 23456666777777777777777776665421 0 11 244667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITA----GLF-PTKETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAPDNITYGA 547 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ 547 (675)
.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|+..+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 7778888888888888888777653 110 11346777888888888888888888887651 11222567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---CCCH-HHHHHHHHHHHHcCC---HHHHHHHHHHHhhCC-ChhhHHHHHHHH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGI---SPCE-VTRVTLAYEYCKQGD---SATAMIILESLDKKL-WIRTVNTLIRKL 619 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 619 (675)
+...+.+.|++++|...+++.++... .|.. ..+..+...|...|+ .++|+.++++....+ ....+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 88888889999999999888876311 1222 334455666777777 777777777643322 233566788888
Q ss_pred HccCCHHHHHHHHHHHhcC
Q 044815 620 CSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~ 638 (675)
.+.|++++|..+|+++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999887653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-11 Score=107.60 Aligned_cols=161 Identities=16% Similarity=0.059 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYC 588 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 588 (675)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..++..|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44455555666666666666666655432 22455566666666666666666666666665321 13345555666666
Q ss_pred HcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 044815 589 KQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDL 666 (675)
Q Consensus 589 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 666 (675)
..|++++|.+.++++.. +.+...+..++..+...|++++|...++++++..+. +...+..++.++...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666544 234556666677777777777777777777776665 666777777777777777777777
Q ss_pred HHHHHh
Q 044815 667 SQRIAE 672 (675)
Q Consensus 667 ~~~~~~ 672 (675)
++++++
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-10 Score=105.76 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 044815 436 DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMIC 515 (675)
Q Consensus 436 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 515 (675)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.|++..+... .+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 34555556666666666666666666666654325555665666667777777777777777766542 24556666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 044815 516 GYLRDGNISSAVKYFQRMNQIGCAPD-N-------ITYGALISGLCKQSKLDEACQFYESMIGKGISPC---EVTRVTLA 584 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 584 (675)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..|+++++ +.|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 777777777777777777663 233 3 3466677777788888888888888877 4565 24556677
Q ss_pred HHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 585 YEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
..|...|+ ..++++..- .+...+... .....+.+++|+..++++++..|. +..+...+..+
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 77765543 233333332 122223222 233456789999999999999998 77777666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-10 Score=112.74 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=130.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHH
Q 044815 405 YNAIIDGLCKKGRVQEAYELLKKAFQR----ELQ--A-DKITYTILLSEHLKQAETKQALGLFCRMVKAGLN----PDIH 473 (675)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~ 473 (675)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344455555556666666555554432 111 1 1233444555566666666666666655543211 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYT-----SMICGYLRDGNISSAVKYFQRMNQIGCAP---DNIT 544 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~ 544 (675)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5666667777777777777777776643111111 1111 22334667888888888887776532111 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHH
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGK----GISPCE-VTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKL 619 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 619 (675)
+..+...+...|++++|...++++.+. |..++. ..+..++.++...|+.++|...+++....... ...+..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~---~g~~~~~ 332 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR---TGFISHF 332 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc---ccHHHHH
Confidence 566777788888888888888887642 222222 24556777888889999998888876541100 1122333
Q ss_pred HccCCHHHHHHHHHHHhcCCCC
Q 044815 620 CSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
...| +....+++++....+.
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTCS
T ss_pred HHcc--HHHHHHHHHHHhCCCC
Confidence 3444 4555666666666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-10 Score=107.41 Aligned_cols=191 Identities=9% Similarity=-0.040 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGAL 548 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 548 (675)
.++..+......+...|++++|...|+++++....++...+..+..++...|++++|+..+++..+. .|+ ...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4567788888888899999999999998888764467777777888888999999999999988874 454 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C---ChhhHHHHH
Q 044815 549 ISGLCKQSKLDEACQFYESMIGKGISPCE--------VTRVTLAYEYCKQGDSATAMIILESLDKK-L---WIRTVNTLI 616 (675)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~l~ 616 (675)
..++...|++++|...+++.++ +.|+. ..+..++..+...|++++|++.++++.+. | +...|..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 8888899999999999999887 44442 34666778888888888888888887653 2 345677777
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+|...| ...++++...+.. +...+... .....+.+++|...++++++
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 7775443 4455666666655 44444433 34556778999999999876
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-09 Score=101.80 Aligned_cols=246 Identities=15% Similarity=0.054 Sum_probs=160.0
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 377 HCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQA 456 (675)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 456 (675)
..-.|.+..++.-...+.. ......-..+.++|...|+++.. ....|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 3445777777663222211 12223333455777777776531 11233433444333333 222 6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 457 LGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-FPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 457 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
+..+++..+.+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776654 45666667888888888999999999988877653 23567778888899999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-
Q 044815 536 IGCAP-----DNITYGALISGL--CK--QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK- 605 (675)
Q Consensus 536 ~~~~p-----~~~~~~~l~~~~--~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 605 (675)
. .| +..+...++.++ .. .+++++|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 56 345555566553 22 33889999999998773 35423333344488889999999999887654
Q ss_pred -----------CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 606 -----------KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 606 -----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
+.++.++..+|......|+ +|.++++++.+..|+ ++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-hp~i~ 290 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-HAFIK 290 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-CHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-ChHHH
Confidence 3456666555555555676 888999999999887 65544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-11 Score=114.66 Aligned_cols=225 Identities=16% Similarity=0.100 Sum_probs=158.4
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHhHHHHH
Q 044815 448 LKQAETKQALGLFCRMVKA-------GLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA------GL-FPTKETYTSM 513 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 513 (675)
...|++++|+..+++..+. ..+....++..+...+...|++++|...++++.+. +- .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 22334667889999999999999999999998864 11 1235678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHH
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQI------GCAP-DNITYGALISGLCKQSKLDEACQFYESMIGK------GISPC-EVT 579 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~-~~~ 579 (675)
...|...|++++|...+++..+. ...| ...++..+...+...|++++|..+++++++. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999864 1123 2567888999999999999999999999874 11332 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC-----------CChhhHHHHHHHHHccC------CHHHHHHHHHHHhcCCCCC
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDKK-----------LWIRTVNTLIRKLCSEK------RVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~p 642 (675)
+..++..|.+.|++++|...++++... .....|..+...+...+ .+.++...++......+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT- 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-
Confidence 678999999999999999999987541 12233444444444333 344444444443333333
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 643 DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 643 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
...++..++.+|...|++++|.++++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999863
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-10 Score=112.61 Aligned_cols=173 Identities=13% Similarity=0.037 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 044815 417 RVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKA----GLNPD-IHAYTTLIAAFCRQKKMKES 491 (675)
Q Consensus 417 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 491 (675)
++++|...|++. ...|...|++++|...|++..+. +-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455566666666666655442 11111 34555666666666666666
Q ss_pred HHHHHHHHHCCCCC-C----HhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 044815 492 EKFFQEAITAGLFP-T----KETYTSMICGYLRD-GNISSAVKYFQRMNQIGCA-PD----NITYGALISGLCKQSKLDE 560 (675)
Q Consensus 492 ~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~ 560 (675)
...+++.++..... + ..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 66666555431100 0 22444445555553 5555555555554442100 00 1234444445555555555
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 561 ACQFYESMIGKGISPCE------VTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 561 A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
|+..|+++++....... ..+..++.++...|++++|...+++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555442211110 023334444444555555555554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-10 Score=124.63 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
...|+.+...+.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|...|+++++... -+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445555555555555555555555555442 22344555555555555555555555555554321 134455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 594 (675)
|.+.|++++|++.|++..+. .|+ ...|..+..+|...|++++|+..|+++++ +.|+ ...+..++.+|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 55555555555555555442 232 44455555555555555555555555554 3333 233444555555555555
Q ss_pred HHHHHHHHH
Q 044815 595 TAMIILESL 603 (675)
Q Consensus 595 ~A~~~~~~~ 603 (675)
+|.+.++++
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=96.85 Aligned_cols=160 Identities=13% Similarity=0.085 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK 486 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 486 (675)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Confidence 33334444444444444444433321 1233334444444444444444444444444332 223444444445555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 487 KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYE 566 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 566 (675)
++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++
T Consensus 91 ~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555444321 234445555555555555555555555554432 2234455555555555555555555555
Q ss_pred HHHh
Q 044815 567 SMIG 570 (675)
Q Consensus 567 ~~~~ 570 (675)
++++
T Consensus 169 ~~~~ 172 (186)
T 3as5_A 169 KANE 172 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-09 Score=106.40 Aligned_cols=174 Identities=10% Similarity=-0.051 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR----ELQAD-KITYTILLSEHLKQAETKQA 456 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~A 456 (675)
++++|...|.+. ...|...|++++|.+.|++..+. +..++ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367776666554 66677788888888888776643 21111 35677777888888888888
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhHHHHHHHHHHHcCCHHH
Q 044815 457 LGLFCRMVKAGLN-PD----IHAYTTLIAAFCRQ-KKMKESEKFFQEAITAGLFP-T----KETYTSMICGYLRDGNISS 525 (675)
Q Consensus 457 ~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~ 525 (675)
+..+++..+.... .+ ..++..+...|... |++++|...|++..+..... + ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888777653110 11 34677777777775 88888888888877642111 1 3457777778888888888
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 526 AVKYFQRMNQIGCAPDN------ITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
|+..|++..+....... ..|..+..++...|++++|...|++.++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888887764322111 1456667777778888888888888776
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-10 Score=108.16 Aligned_cols=206 Identities=15% Similarity=0.040 Sum_probs=131.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS------DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ------G 362 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g 362 (675)
...++..+...|...|++++|...+.+.++. ...+....++..+...+...|++++|...+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4556777888888888888888888877653 212234556777888888888888888888887653 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 044815 363 L-LPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE------G-CTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR--- 431 (675)
Q Consensus 363 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 431 (675)
. +....++..+...|...|++++|...++++.+. + .+....++..+...|...|++++|...++++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123556777888888888888888888887654 1 1223567778888888888888888888887753
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 432 ----ELQA-DKITYTILLSEHLKQAE------TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 432 ----~~~~-~~~~~~~li~~~~~~~~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
...+ ....|..+.......+. +.++...++.... ..+....++..+...|...|++++|..+|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 22233333333333222 2222222221111 1122345778888999999999999999988875
Q ss_pred C
Q 044815 501 A 501 (675)
Q Consensus 501 ~ 501 (675)
.
T Consensus 281 ~ 281 (283)
T 3edt_B 281 N 281 (283)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-09 Score=100.18 Aligned_cols=240 Identities=9% Similarity=0.004 Sum_probs=169.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 410 DGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMK 489 (675)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (675)
+-..-.|.+..++.-..++ ....+.....-+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3344578888887733322 2222333444455777777776532 12244444444444433 322
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..+-.+ +...+...+..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888887665 3566666788899999999999999999987755312 4567888899999999999999999999
Q ss_pred HhCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHhhCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 569 IGKGISP-----CEVTRVTLAYE--YCKQG--DSATAMIILESLDKKL-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 569 ~~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
.+ ..| +..+...|+.+ ....| +.++|..+|+++.... +...-..+..++.+.|++++|.+.++.+++.
T Consensus 163 ~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred Hh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88 566 35566666655 44445 8999999999987753 3223333444888999999999999987765
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 639 ----------DQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 639 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+|+ |+.++..++......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 366 78888888888888897 88999988865
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-09 Score=102.58 Aligned_cols=185 Identities=15% Similarity=0.134 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT---KETYTSMICGYLRDGNISSAVKYFQRMNQIGC-APD-NIT 544 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~ 544 (675)
.+...+..+...+.+.|++++|...|+++++.... + ...+..+..+|.+.|++++|+..|++..+... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555666666677777777777777777665321 2 45666666777777777777777777766421 112 334
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHH
Q 044815 545 YGALISGLCK--------QSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTL 615 (675)
Q Consensus 545 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 615 (675)
+..+..++.. .|++++|+..|+++++. .|+.. ....+. .+..+.. .....+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~-~~~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRA-KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHH-HHHHHHHHH
Confidence 5556666666 67777777777777662 23321 111110 0000000 001124567
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhc----------CchhHHHHHHHHHHh
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNV--DRVSLAALKNACYES----------NKYALFSDLSQRIAE 672 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 672 (675)
+..|.+.|++++|+..|+++++..|.. ....+..++.+|... |++++|...++++++
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 888889999999999999998887753 245788888888876 888999999998876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-09 Score=96.05 Aligned_cols=176 Identities=13% Similarity=0.054 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC----CHHHHHHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDG----NISSAVKYF 530 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 530 (675)
+|+..|++..+.| +...+..|...|...+++++|.++|++..+.| +...+..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 56666777777777777777777777777654 45666666666665 5 677777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 044815 531 QRMNQIGCAPDNITYGALISGLCK----QSKLDEACQFYESMIGKGIS-PCEVTRVTLAYEYCK----QGDSATAMIILE 601 (675)
Q Consensus 531 ~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 601 (675)
++..+.| +...+..+...|.. .+++++|...|++..+.|.. .....+..|+..|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776643 45566666666655 66777777777777765421 014556666777766 666777777777
Q ss_pred HHhhC-CChhhHHHHHHHHHcc-C-----CHHHHHHHHHHHhcCCC
Q 044815 602 SLDKK-LWIRTVNTLIRKLCSE-K-----RVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 602 ~~~~~-~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 640 (675)
+.... ++...+..|+..|... | ++++|+.+|+++.+.|.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 76554 4555666666666542 2 67777777777666653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-10 Score=121.95 Aligned_cols=171 Identities=9% Similarity=-0.031 Sum_probs=100.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044815 483 CRQKKMKESEKFFQEAI--------TAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK 554 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 554 (675)
...|++++|.+.++++. +.. ..+...+..+...|...|++++|+..++++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44566666666666665 322 1244556666666666666666666666666532 2234566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALF 631 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (675)
.|++++|+..|+++++ +.|+ ...+..++.+|.+.|++++ ++.|+++.+ +.+...|..++.++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666666 3342 3455566666666666666 666666543 33455666666666667777777777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 632 FHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 632 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
|+++++.+|. +...+..++.++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 7766666665 56666666666655443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.11 E-value=9e-10 Score=98.24 Aligned_cols=162 Identities=10% Similarity=-0.010 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYE-Y 587 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~ 587 (675)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+ ..|+......+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHH
Confidence 45566677888889999998888877632 22466788888888889999999998888876 33433333222222 2
Q ss_pred HHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCchhHHH
Q 044815 588 CKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-DRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 588 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
...++..+|...+++... +.+...+..++..+...|++++|+..|+++++.+|.+ +...+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 233334457778887654 3467888999999999999999999999999999864 4678999999999999999999
Q ss_pred HHHHHHHhc
Q 044815 665 DLSQRIAEG 673 (675)
Q Consensus 665 ~~~~~~~~~ 673 (675)
..+++++..
T Consensus 165 ~~y~~al~~ 173 (176)
T 2r5s_A 165 SKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-09 Score=97.96 Aligned_cols=182 Identities=9% Similarity=0.045 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP--TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN----IT 544 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~ 544 (675)
+...+..+...+.+.|++++|...|+++++..... ....+..+..+|.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 34556667777888899999999999888754221 13567778888889999999999999888743 432 24
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 545 YGALISGLCK------------------QSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 545 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+..+..++.. .|++++|...|+++++. .|+.. ........ + .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~------~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----V------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----H------HHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----H------HHHHHH--
Confidence 4445555543 45677777777777763 34321 11110000 0 000000
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 606 KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR---VSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
......++..|.+.|++++|+..|+++++..|+ +. ..+..++.++.+.|++++|.+.++++.+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 011235677788899999999999999988887 43 5688899999999999999999987765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-09 Score=101.88 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-Hh
Q 044815 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD---IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF-PT-KE 508 (675)
Q Consensus 434 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~ 508 (675)
+.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+++++.... |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4566778888899999999999999999999864 223 678889999999999999999999999986421 12 45
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044815 509 TYTSMICGYLR--------DGNISSAVKYFQRMNQIGCAPDN-ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVT 579 (675)
Q Consensus 509 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 579 (675)
.+..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH----HHHH
Confidence 67778888888 99999999999999885 3542 222211 111111110 0123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh-CCC----hhhHHHHHHHHHcc----------CCHHHHHHHHHHHhcCCCCCC-
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK-KLW----IRTVNTLIRKLCSE----------KRVGMAALFFHKLLGKDQNVD- 643 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~- 643 (675)
+..++..|.+.|++++|+..|+++.+ .|+ ...+..++.+|... |++++|+..|+++++..|+..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 56677888888888888888888655 232 34567777777755 889999999999999888722
Q ss_pred -HHHHHHHHHHHHhcCchhHHH
Q 044815 644 -RVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 644 -~~~~~~l~~~~~~~g~~~~A~ 664 (675)
......+..++...++++++.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 235556666666666665544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-07 Score=96.85 Aligned_cols=357 Identities=9% Similarity=-0.015 Sum_probs=197.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHH----hcCCh
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGW-TEKAFRLFLKLVRSDNY-KPNVHTYTAMISGYC----KEEKM 348 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~~~~ 348 (675)
++++.+..+|+..+.. .|++..|...+....+.+. .+....+|+..+..-|. ..+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5688888888877764 4677777777776666553 34556667776665443 235566666665443 23556
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 349 NRAEMLLERMKEQGLLPNT-NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427 (675)
Q Consensus 349 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 427 (675)
+.+..+|++.+..... +. ..|..... +.+......+..++.+.. +.+..|..++++
T Consensus 106 ~~vR~iy~rAL~~P~~-~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMG-SLSELWKDFEN-FELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCT-THHHHHHHHHH-HHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhh-hHHHHHHHHHH-HHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHH
Confidence 7777778777763111 11 12222211 111111122222221111 122333333333
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 428 AFQRELQADKITYTILLSEHLKQA-------ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 428 ~~~~~~~~~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
+...-...+...|...+.--...+ ..+.+..+|++++... +.+...|...+.-+.+.|+.+.|..++++++.
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 322100112334544444322211 0344667777777653 44577777777777788888888888888887
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 501 AGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI---------GCAP---DNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 501 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
. +.+...|.. |....+.++. ++.+.+. +..+ ....|...+..+.+.+..+.|..+|+++
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6 223322222 2221111111 2222111 0001 1245666666666777889999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 569 IGKGISPCEVTRVTLAYEYCKQ-GDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 569 ~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
+. ...+...+...+..-... ++.+.|.++|+...+. .++..|...+....+.|+.+.|..+|+++. . ...
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k-~~~ 385 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----K-TSR 385 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----C-BHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----H-HHH
Confidence 32 112334444333333333 3688899999886652 234556667777778889999999998872 2 567
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.|...+..-...|+.+.+..+++++.+.
T Consensus 386 lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 386 MWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7888887777889988888888888754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-08 Score=92.49 Aligned_cols=171 Identities=14% Similarity=0.081 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS----KLDEACQFY 565 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 565 (675)
+|.+.|++..+.| +...+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555542 45555556666666666666666666665543 44455555555554 4 566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCC----hhhHHHHHHHHHc----cCCHHHHHHHHH
Q 044815 566 ESMIGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLW----IRTVNTLIRKLCS----EKRVGMAALFFH 633 (675)
Q Consensus 566 ~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~A~~~~~ 633 (675)
++..+.| +...+..|+..|.. .+++++|.++|++.....+ +..+..|+..|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 23455555555555 5566666666666555444 4555666666655 556666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhc-C-----chhHHHHHHHHHHh
Q 044815 634 KLLGKDQNVDRVSLAALKNACYES-N-----KYALFSDLSQRIAE 672 (675)
Q Consensus 634 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~ 672 (675)
++.+.+. +...+..|+.+|... | ++++|.++++++.+
T Consensus 154 ~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 154 GSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 6665521 333555555555432 2 56666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-09 Score=87.96 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044815 510 YTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK 589 (675)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 589 (675)
|..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.+ |
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-------------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-------------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--C--------------
Confidence 4445555555555555555555554432 1234444445555555555555555555554422 1
Q ss_pred cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 590 QGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
.+...+..++..+...|++++|...++++++..+. +..++..++.++...|++++|.+.+++
T Consensus 67 -----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 67 -----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 22334444555555555555555555555555444 445555555555555555555555555
Q ss_pred HHh
Q 044815 670 IAE 672 (675)
Q Consensus 670 ~~~ 672 (675)
+++
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-09 Score=103.17 Aligned_cols=164 Identities=11% Similarity=0.017 Sum_probs=121.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTL 583 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l 583 (675)
+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++.+ ..|+.... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 4455666777777888888888888887764 34 456777777888888888888888888766 34554333 223
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCch
Q 044815 584 AYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-DRVSLAALKNACYESNKY 660 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 660 (675)
...+.+.|+.++|...+++... +.+...+..++..|...|++++|+..|+++++.+|.. +...+..++.++...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3446677777778877777544 4467778888888888999999999999988888762 267888889999999999
Q ss_pred hHHHHHHHHHHhc
Q 044815 661 ALFSDLSQRIAEG 673 (675)
Q Consensus 661 ~~A~~~~~~~~~~ 673 (675)
++|...+++.+..
T Consensus 272 ~~a~~~~r~al~~ 284 (287)
T 3qou_A 272 DALASXYRRQLYA 284 (287)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9998888887753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-06 Score=91.05 Aligned_cols=105 Identities=9% Similarity=-0.014 Sum_probs=76.6
Q ss_pred hCC-ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhh-CCC-C
Q 044815 145 SNG-NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGL-VEYAEEVFDEMCA-RGV-C 220 (675)
Q Consensus 145 ~~~-~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~-~~~-~ 220 (675)
+.| +++.|+.+|+..+..|-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+.... .|. .
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYW 82 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCT
T ss_pred HcCcchHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCc
Confidence 345 488899999999988866 8899999999999885 3688899988888777763 4667788888775 342 3
Q ss_pred CCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhHC
Q 044815 221 ADASSYKLMVVAYC----RMGRVTEADRWLSAMLDR 252 (675)
Q Consensus 221 ~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~ 252 (675)
.+...|...+..+. .+++.+.+..+|++.+..
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 46788887776543 346788899999998874
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.2e-08 Score=92.55 Aligned_cols=228 Identities=7% Similarity=-0.041 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 044815 417 RVQEAYELLKKAFQRELQADKITYTILLSEHLKQA--ETKQALGLFCRMVKAGLNPDIHAYTTLIAAF----CRQ---KK 487 (675)
Q Consensus 417 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~ 487 (675)
..++|++++++++..+ +-+...|+.-...+...+ ++++++.+++.+.... +-+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3457777777777653 334555666666676766 7777777777777654 33444555444444 444 66
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNIS--SAVKYFQRMNQIGCAPDNITYGALISGLCKQSK------LD 559 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~ 559 (675)
++++..+++.+.+... .+..+|+.-...+.+.|.++ +++++++++.+.. .-|...|+.-...+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 7777777777776543 46667776666666677766 7777777777643 2355566665555555555 67
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhh-----CCChhhHHHHHHHHHccCCHHHHHHHHH
Q 044815 560 EACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSAT-AMIILESLDK-----KLWIRTVNTLIRKLCSEKRVGMAALFFH 633 (675)
Q Consensus 560 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (675)
++++.+++++..... |...++.+...+.+.|+..+ +..+.+++.. ..+...+..++.+|.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777763221 34555666666666666433 4445555432 2345566667777777777777777777
Q ss_pred HHhc-CCCCCCHHHHHHH
Q 044815 634 KLLG-KDQNVDRVSLAAL 650 (675)
Q Consensus 634 ~~~~-~~~~p~~~~~~~l 650 (675)
.+.+ .+|- ....|...
T Consensus 283 ~l~~~~Dpi-r~~yW~~~ 299 (306)
T 3dra_A 283 LLKSKYNPI-RSNFWDYQ 299 (306)
T ss_dssp HHHHTTCGG-GHHHHHHH
T ss_pred HHHhccChH-HHHHHHHH
Confidence 7665 4554 55555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-10 Score=98.10 Aligned_cols=142 Identities=8% Similarity=-0.020 Sum_probs=106.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ 590 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 590 (675)
|...+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++++ +.|+ ...+..++.+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 334455667788888888877652 333 33556677888888888888888888888 4454 46777888888888
Q ss_pred CCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 591 GDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALF-FHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 591 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
|++++|+..|++..+ +.+...|..++..|.+.|++++|.+. ++++++.+|. ++.+|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 888888888888655 34677888899999999998776654 5899999998 88888888888877775
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-08 Score=100.11 Aligned_cols=130 Identities=9% Similarity=-0.021 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIG--C-APD--NITYGALISGLCKQSKLDEACQFYESMIGK----GISP-CEV 578 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~ 578 (675)
+|+.+...|...|++++|+..+++..+.- . .+. ..++..+...|.. |++++|+..|++.++. |..+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 44444555555555555555555543310 0 111 2345555555655 6666666666666541 1000 023
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDKK----LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
++..++..|.+.|++++|+..|++.... +. ...+..++.++...|++++|+..|++++ ..|
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 4455666666666666666666665431 11 1234455555666677777777777766 544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-09 Score=96.24 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS----------------MICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
...+......+...|++++|...|+++++..+ -+...|.. +..+|.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566778899999999999999998642 23556666 88999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC--HHHHHHHHHHHhhCC-Chhh
Q 044815 536 IGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGD--SATAMIILESLDKKL-WIRT 611 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~-~~~~ 611 (675)
.. +-+...+..+..++...|++++|+..|+++++ +.|+ ...+..++..|...|+ .+.+...++.+..++ ....
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 159 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHH
Confidence 53 23577899999999999999999999999998 5564 4677888888876654 345566666665432 2224
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+...+.++...|++++|+..|+++++..|.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 455677777899999999999999988875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-08 Score=84.52 Aligned_cols=129 Identities=21% Similarity=0.344 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044815 473 HAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGL 552 (675)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 552 (675)
..+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3577888999999999999999999988653 467888899999999999999999999998754 34577888888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 553 CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
...|++++|...++++.+... .+...+..++..|.+.|++++|...++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999999999999999887431 134455555666666666666666655543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.7e-09 Score=111.25 Aligned_cols=162 Identities=10% Similarity=-0.018 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
.|++++|.+.++++.+... .+...|..+...|...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887643 357888899999999999999999999998753 23477888899999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc---CCHHHHHHHHHHHhcC
Q 044815 565 YESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSE---KRVGMAALFFHKLLGK 638 (675)
Q Consensus 565 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 638 (675)
+++.++. .|+ ...+..++.+|.+.|++++|.+.+++..+ +.+...+..++..+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999884 443 56778899999999999999999998765 34677788899999988 9999999999999999
Q ss_pred CCCCCHHHHHHHH
Q 044815 639 DQNVDRVSLAALK 651 (675)
Q Consensus 639 ~~~p~~~~~~~l~ 651 (675)
++. +...+..++
T Consensus 158 ~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVG-AVEPFAFLS 169 (568)
T ss_dssp TCC-CSCHHHHTT
T ss_pred CCc-ccChHHHhC
Confidence 887 444555444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.9e-10 Score=94.87 Aligned_cols=122 Identities=8% Similarity=-0.039 Sum_probs=103.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
|...+...|++++|+..++.... ..|+. ..+..++..|.+.|++++|++.|++..+ +.+..+|..++.+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44455677899999999999876 44433 4567799999999999999999999765 4578899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHH-HHHHHh
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDL-SQRIAE 672 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 672 (675)
+++|+..|+++++.+|. +...+..++.+|.+.|++++|.+. ++++++
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999887765 588765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.5e-08 Score=91.84 Aligned_cols=186 Identities=10% Similarity=0.021 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHH
Q 044815 436 DKITYTILLSEHLKQAETKQALGLFCRMVKAGLN-P-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK--ETYT 511 (675)
Q Consensus 436 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 511 (675)
+...+..+...+...|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++++....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3456667788899999999999999999986322 1 1467888999999999999999999999986532111 2455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 512 SMICGYLR------------------DGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 512 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
.+..++.. .|++++|+..|+++.+. .|+.. .+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 55555554 57899999999999884 45532 22211110 0011111
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC-h---hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 573 ISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK-LW-I---RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 573 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
......++..|.+.|++++|+..|+++.+. |+ . ..+..++.++.+.|++++|++.++++...+|.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 112245778899999999999999997653 32 2 46788999999999999999999999888775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.6e-07 Score=85.80 Aligned_cols=216 Identities=10% Similarity=0.058 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 044815 384 ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG--RVQEAYELLKKAFQRELQADKITYTILLSEH----LKQ---AETK 454 (675)
Q Consensus 384 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~ 454 (675)
++|+++++.+...+ +-+..+|+.-...+...| +++++++.++.++..+ +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 34555554444442 223334444444444444 4555555555444432 12233333322222 222 3444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC------HHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMK--ESEKFFQEAITAGLFPTKETYTSMICGYLRDGN------ISSA 526 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A 526 (675)
+++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++.++++++++.++ -|...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 5555554444442 224444444444444444444 44444544444432 244444444433333333 4444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 527 VKYFQRMNQIGCAPDNITYGALISGLCKQSKLDE-ACQFYESMIGKG-I-SPCEVTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
++.+++++... +-|...|+.+...+.+.|+..+ +..+++++.+.+ . ..+...+..++..|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 44444444422 1234444444444444444222 333444333311 0 112233344444444445555555555544
Q ss_pred h
Q 044815 604 D 604 (675)
Q Consensus 604 ~ 604 (675)
.
T Consensus 285 ~ 285 (306)
T 3dra_A 285 K 285 (306)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-08 Score=89.03 Aligned_cols=129 Identities=6% Similarity=0.010 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 522 (675)
+...+.+.|++++|+..+++.++.. +-+...+..+..++...|++++|...|+++++..+ .+...|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 4555555555555555555555543 23455555555555555555555555555555432 234455555555443332
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 523 --ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 523 --~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
.+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPST 190 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCH
Confidence 2233333333321 111112222233344445555555555555555 44443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.3e-09 Score=100.88 Aligned_cols=171 Identities=10% Similarity=0.025 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAPD-NITYGALISGLCKQSKLD 559 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~ 559 (675)
.+++++|...|.++ ...|...|++++|...+.+..+. +-.+. ..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35666666666544 33556677777777777765542 10111 347788888999999999
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC----hhhHHHHHHHHHccCCHH
Q 044815 560 EACQFYESMIGK----GISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK----LW----IRTVNTLIRKLCSEKRVG 626 (675)
Q Consensus 560 ~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~g~~~ 626 (675)
+|+..|++.++. |-.. ...++..++..|.. |++++|+..+++...- .+ ..++..++..|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 999999998752 2111 12466778889988 9999999999986541 11 456788999999999999
Q ss_pred HHHHHHHHHhcCCCCC-C----HHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 627 MAALFFHKLLGKDQNV-D----RVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+|+..|+++++..+.. + ..++..++.++...|++++|...+++++
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999998864321 1 2367788888999999999999999986
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=109.63 Aligned_cols=173 Identities=10% Similarity=-0.034 Sum_probs=113.9
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 413 CKKGRVQEAYELLKKAF--------QRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|+..++++.+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56777777777777776 32 23445566777777777777777777777777653 3356677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
.|++++|.+.|+++.+... .+...|..+..+|.+.|++++ +..|++..+.. +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777776542 245667777777777777777 77777776642 22456677777777777777777777
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHHcCC
Q 044815 565 YESMIGKGISPCE-VTRVTLAYEYCKQGD 592 (675)
Q Consensus 565 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 592 (675)
|+++++ +.|+. ..+..++.+|...|+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 777766 44553 444556666655443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-08 Score=86.60 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
.+..++..+.+.|++++|...|+++.. +.+...|..++.+|...|++++|+..|+++++.+|. ++..|..++.+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 334445555555555555555555433 224444555555555555555555555555555554 44555555555555
Q ss_pred cCchhHHHHHHHHHHh
Q 044815 657 SNKYALFSDLSQRIAE 672 (675)
Q Consensus 657 ~g~~~~A~~~~~~~~~ 672 (675)
.|++++|.+.++++++
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=91.69 Aligned_cols=160 Identities=8% Similarity=-0.053 Sum_probs=116.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGC-APDNI----TYGALISGLCKQSKLDEACQFYESMIGKGIS-PC----EVTRVT 582 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~ 582 (675)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++++.... ++ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888889999888888876321 12211 2334566666778889999999988873222 22 235777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh----C-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC----CC-HHHHH
Q 044815 583 LAYEYCKQGDSATAMIILESLDK----K-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN----VD-RVSLA 648 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~-~~~~~ 648 (675)
++..|...|++++|...++++.+ . . ...++..++..|.+.|++++|+.+++++++..+. +. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999998888663 1 1 2346788999999999999999999988765322 12 67889
Q ss_pred HHHHHHHhcCc-hhHHHHHHHHHHh
Q 044815 649 ALKNACYESNK-YALFSDLSQRIAE 672 (675)
Q Consensus 649 ~l~~~~~~~g~-~~~A~~~~~~~~~ 672 (675)
.++.++.+.|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999998875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=83.32 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=87.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHH
Q 044815 538 CAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVN 613 (675)
Q Consensus 538 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 613 (675)
+.|+ ...+......|.+.|++++|++.|++.++ +.| +...+..++.+|.+.|++++|+..+++..+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3444 34667777788888888888888888887 344 346667788888888888888888888655 34677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
.++.++...|++++|++.|+++++.+|. +...+..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHh
Confidence 8899999999999999999999999888 87777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-08 Score=90.33 Aligned_cols=123 Identities=7% Similarity=-0.067 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 622 (675)
+..+...+...|++++|...|++++ .|+...+..++..|.+.|++++|+..+++... +.+...|..++.++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3444555666666666666666553 34555666666667777777777776666543 33455677777777777
Q ss_pred CCHHHHHHHHHHHhcCCCCCCH----------------HHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 623 KRVGMAALFFHKLLGKDQNVDR----------------VSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
|++++|+..|+++++..+. +. ..+..++.++...|++++|.+.++++++
T Consensus 85 ~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7888888888777776654 33 6788888888888888888888888775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-08 Score=106.04 Aligned_cols=151 Identities=12% Similarity=-0.030 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 044815 450 QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKY 529 (675)
Q Consensus 450 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 529 (675)
.|++++|+..+++..+.. +.+...+..+...+.+.|++++|.+.+++..+... .+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999888763 44678888999999999999999999999988653 3577888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc---CCHHHHHHHHHHHhh
Q 044815 530 FQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ---GDSATAMIILESLDK 605 (675)
Q Consensus 530 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 605 (675)
+++..+.. +.+...+..+..++.+.|++++|.+.++++++. .|+ ...+..++..+... |+.++|.+.+++...
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99988753 334778888999999999999999999999884 443 56778888999999 999999999988765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-08 Score=83.57 Aligned_cols=99 Identities=14% Similarity=-0.027 Sum_probs=90.1
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 044815 573 ISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAA 649 (675)
Q Consensus 573 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 649 (675)
+.|+. ..+...+..|.+.|++++|++.|++..+ +.+...|..++.+|.+.|++++|+..++++++.+|. +...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHH
Confidence 55654 5667899999999999999999999765 457888999999999999999999999999999998 8999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHh
Q 044815 650 LKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 650 l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++.++...|++++|.+.++++++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999986
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-08 Score=94.34 Aligned_cols=163 Identities=12% Similarity=0.044 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGA- 547 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 547 (675)
+.+...+..+...+.+.|++++|...|+++.+... -+...+..+...+.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 33455666777777788888888888888877643 35667777888888888888888888887663 455443322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CC-C--hhhHHHHHHHHHcc
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK-KL-W--IRTVNTLIRKLCSE 622 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~--~~~~~~l~~~~~~~ 622 (675)
....+...++.++|...++++++ ..|+ ...+..++..|...|++++|...++++.. .| + ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22235667777778888888877 3343 46667788888888888888888888655 22 2 55678888888888
Q ss_pred CCHHHHHHHHHHHh
Q 044815 623 KRVGMAALFFHKLL 636 (675)
Q Consensus 623 g~~~~A~~~~~~~~ 636 (675)
|+.++|...|++.+
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888888887765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-07 Score=91.55 Aligned_cols=161 Identities=6% Similarity=-0.065 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHH
Q 044815 511 TSMICGYLRDGNISSAVKYFQRMNQIGCAPDN-----ITYGALISGLCKQSKLDEACQFYESMIGKGI---SPC--EVTR 580 (675)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~--~~~~ 580 (675)
...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...++++++... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33455556666666666666655543211110 1223344445566677777777766664211 111 2355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh----CCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC----C-CHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK----KLW-----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN----V-DRVS 646 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p-~~~~ 646 (675)
..++..|...|++++|...++++.+ .++ ..++..++..|.+.|++++|+.+++++++.... . -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5666667777777777777666541 111 135666777777777777777777776654211 0 1456
Q ss_pred HHHHHHHHHhcCchhHH-HHHHHHHH
Q 044815 647 LAALKNACYESNKYALF-SDLSQRIA 671 (675)
Q Consensus 647 ~~~l~~~~~~~g~~~~A-~~~~~~~~ 671 (675)
|..++.+|...|++++| ...+++++
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77777777777777777 66666665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-08 Score=87.25 Aligned_cols=110 Identities=10% Similarity=-0.081 Sum_probs=81.8
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 528 KYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 528 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..++++.. +.|+ ...+..+...+...|++++|...|+++++ ..| +...+..++.+|...|++++|+..|+++..
T Consensus 8 ~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 3343 44666677788888888888888888887 334 455667788888888888888888888654
Q ss_pred --CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 606 --KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 606 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+...|..++.+|...|++++|+..|+++++..|.
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 346677888888888888888888888888887664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-08 Score=96.79 Aligned_cols=129 Identities=12% Similarity=0.007 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPC----------------EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
...+..+...+.+.|++++|+..|+++++ +.|+ ...+..++.+|.+.|++++|+..++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666667777777777777666 2333 35677788888888888888888888655
Q ss_pred --CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHH-HHHHHHHHhc
Q 044815 606 --KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALF-SDLSQRIAEG 673 (675)
Q Consensus 606 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 673 (675)
+.+...|..++.+|...|++++|+..|+++++.+|. +...+..++.++...|++++| ..+++++.++
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888899999999999999888888 888888889899999998888 5566666553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-08 Score=86.10 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=25.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQ 430 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 430 (675)
..+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 34444455555555554444332 22344444444555555555555555544433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-07 Score=82.41 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLC 620 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 620 (675)
.+..+...+...|++++|...|++.++. .| +...+..++..+...|++++|...+++... +.+...|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555555666666666666666666652 23 345556666666677777777776666544 234556777777777
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHHhcCchhHHHHHHHHHHh
Q 044815 621 SEKRVGMAALFFHKLLGKDQNVDRVSLAAL--KNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..|++++|...|+++++.+|. +...+..+ +..+...|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 778888888888887777776 55555433 3336777888888877776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.8e-08 Score=90.37 Aligned_cols=194 Identities=10% Similarity=-0.023 Sum_probs=126.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 044815 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTL-------IAAFCRQKKMKESEKFFQEAITAGLFPT--------------- 506 (675)
Q Consensus 449 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 506 (675)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+....+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5788888888888888764 3356677766 45555555566666555555441 111
Q ss_pred -------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 044815 507 -------KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC--E 577 (675)
Q Consensus 507 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~ 577 (675)
...+..+...+...|++++|.++|+.+... .|+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123345566777788888888888777653 3554444455556777888888888887554421 111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDKKL-----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
..+..++.++...|++++|+..|++....+ ....+...+.++.+.|+.++|...|++++..+|. ...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 356677778888888888888888775433 2235566777777888888888888888887775 4444444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=96.04 Aligned_cols=194 Identities=12% Similarity=-0.036 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
+...+..+...+.+.|++++|...|+++++... .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455666777777778888888888887777542 366777778888888888888888888877642 224667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
++...|++++|...|+++++. .|+.. .+...+....+.++..... .......+.+......+...+ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWN-SIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHH-HHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 888888888888888887762 23110 0001111111111111111 111111223333333343322 67888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHHh
Q 044815 630 LFFHKLLGKDQNVDRVSLAALKNACYES-NKYALFSDLSQRIAE 672 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 672 (675)
+.++++++.+|. +......+...+.+. +++++|.++++++.+
T Consensus 156 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888888775 666666666666665 678888888887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-07 Score=86.76 Aligned_cols=124 Identities=14% Similarity=0.025 Sum_probs=52.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD--NITYGALISGLCKQ 555 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~ 555 (675)
+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3444444555555555554444322 222233333334445555555555554333210 000 11334444445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 556 SKLDEACQFYESMIGKGISPC--EVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 556 g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
|++++|+..|++.......|. .......+.++.+.|+.++|...|+++.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555443221132 1233444445555555555555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-06 Score=85.37 Aligned_cols=127 Identities=14% Similarity=0.150 Sum_probs=67.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 044815 303 IDGLCKKGWTEKAFRLFLKLVRSDNYKPNVH----TYTAMISGYCKEEKMNRAEMLLERMKEQGLL-PN----TNTYTSL 373 (675)
Q Consensus 303 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 373 (675)
+..+...|++++|.+.+++..+.....|+.. .+..+...+...+++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556667777777777776655433333321 2223445555556666666666666653211 12 2245666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh----c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 374 IYGHCKVGNFERAYDLMDLMGK----E-GCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~----~-g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
...|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++.+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666666666666666666552 1 11111 2244555555555566666555555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.7e-07 Score=83.88 Aligned_cols=126 Identities=16% Similarity=0.024 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK 554 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 554 (675)
+..+...+...|++++|...|+++. .|+...|..+...|...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455556666677777777666553 3466666666666777777777777776666542 2245566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCC--------------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 555 QSKLDEACQFYESMIGKGIS--------------PC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~--------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.|++++|...|+++++.... |+ ...+..++.+|.+.|++++|...+++...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777777666663211 11 13445555556666666666666655443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.5e-06 Score=81.97 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 643 DRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 643 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
....+..++.+|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 555666666666666666666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-07 Score=76.55 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+...|++++|...++++++. .| +...+..++..+...|++++|...+++... +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666667777777777777777777763 23 345666777777788888888887777654 3356677888888
Q ss_pred HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchh
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYA 661 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 661 (675)
+...|++++|...++++++.+|. +...+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcCC
Confidence 89999999999999999988887 7888888888888888753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-07 Score=77.81 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+...|++++|...++++++. .| +...+..++..|...|++++|.+.++++.+ +.+...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 445666666677777777777777777663 23 345566667777777777777777776554 2345667777778
Q ss_pred HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
+.+.|++++|+..|+++++..|. +...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 88888888888888888887776 66677777777766553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=85.14 Aligned_cols=153 Identities=14% Similarity=-0.043 Sum_probs=73.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 044815 484 RQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAP-DNITYGALISGLCKQSKL 558 (675)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~ 558 (675)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664433332 11223455666666666666666666666665441 1111 123455555566666666
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC----hhhHHHHHHHHHccCC
Q 044815 559 DEACQFYESMIGK----GISP--CEVTRVTLAYEYCKQGDSATAMIILESLDK----KLW----IRTVNTLIRKLCSEKR 624 (675)
Q Consensus 559 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~ 624 (675)
++|...+++.++. +-.| ....+..++..+...|++++|...+++... .++ ...+..++..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665542 1011 012334455555555666555555555432 111 1123444555555555
Q ss_pred HHHHHHHHHHHhc
Q 044815 625 VGMAALFFHKLLG 637 (675)
Q Consensus 625 ~~~A~~~~~~~~~ 637 (675)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=7.8e-07 Score=73.25 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKL 619 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 619 (675)
...+..+...+...|++++|...++++++... .+...+..++..+.+.|++++|...++++.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34556666666677777777777777665321 1344556666777777777777777776544 23556677788888
Q ss_pred HccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 620 CSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
...|++++|...++++++..|. +...+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 8888888888888888888877 7777777777766543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=76.73 Aligned_cols=109 Identities=15% Similarity=-0.011 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+.+.|++++|+..|++.++. .| +...+..++.+|.+.|++++|+..+++... +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 446677777888888888888888888873 34 356677788888888888888888888655 3456677888888
Q ss_pred HHccCCHHHHHHHHHHHhcCC------CCCCHHHHHHHHHH
Q 044815 619 LCSEKRVGMAALFFHKLLGKD------QNVDRVSLAALKNA 653 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~ 653 (675)
+...|++++|+..|+++++.+ |. +...+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHH
Confidence 888888888888888888877 44 55555544443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-06 Score=83.49 Aligned_cols=159 Identities=9% Similarity=-0.051 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--HhHHH
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDI------HAYTTLIAAFCRQKKMKESEKFFQEAITAGLF---PT--KETYT 511 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~ 511 (675)
.+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+.... +. ..+|+
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 334445555555555555544443211 11 11223334444555666666666555542111 11 23555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQI-GCAPD-----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EVTR 580 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~ 580 (675)
.+...|...|++++|+..+++..+. ...|+ ..++..+...|...|++++|...+++.++. +.... ..++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5555566666666666666555421 00111 134555555566666666666666655431 10000 2344
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHH
Q 044815 581 VTLAYEYCKQGDSATA-MIILES 602 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A-~~~~~~ 602 (675)
..++..|.+.|+.++| ...+++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Confidence 4455555555555555 444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-07 Score=79.26 Aligned_cols=98 Identities=11% Similarity=-0.154 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+.+.|++++|...|+++++ ..| +...+..++.+|.+.|++++|+..|++... +.+...|..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34566677778888888888888888887 334 345667788888888888888888888655 3466777888888
Q ss_pred HHccCCHHHHHHHHHHHhcCCCC
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
|...|++++|+..|+++++..|.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 88888888888888888887764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=83.40 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=98.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HHHcCCH-
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYE-YCKQGDS- 593 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~- 593 (675)
+...|++++|+..+++..+.. +.+...|..+...|...|++++|...|+++++. .| +...+..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 356789999999999988753 346788999999999999999999999999883 34 45667778888 7899998
Q ss_pred -HHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 594 -ATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 594 -~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
++|...++++.. +.+...+..++..+...|++++|+..|+++++..|.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999998765 346778889999999999999999999999999886
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=76.35 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYES 657 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 657 (675)
+..++..+.+.|++++|+..++++.. +.+...|..++.++...|++++|+..|+++++.+|. +...+..++.++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34556667777777777777777554 335666777777777777777777777777777777 777777777777777
Q ss_pred CchhHHHHHHHHHHh
Q 044815 658 NKYALFSDLSQRIAE 672 (675)
Q Consensus 658 g~~~~A~~~~~~~~~ 672 (675)
|++++|.+.++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-07 Score=78.80 Aligned_cols=102 Identities=13% Similarity=-0.053 Sum_probs=81.7
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHH
Q 044815 538 CAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVN 613 (675)
Q Consensus 538 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 613 (675)
+.|+ ...+..+...+.+.|++++|...|+++++ +.|+ ...+..++.+|.+.|++++|+..|++... +.++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3444 44677777788888889999998888888 4454 46667788888888999999988888755 45677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.++.+|.+.|++++|+..|+++++..++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999988765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-07 Score=79.38 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIR 617 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 617 (675)
+...+..+...+...|++++|+..|++.++ +.| +...+..++.+|.+.|++++|+..+++... +.+...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456788888899999999999999999998 445 456778899999999999999999999765 346778899999
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
+|.+.|++++|+..|+++++.+|. +..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~ 114 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN-GGS 114 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS-SCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chH
Confidence 999999999999999999998886 444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.7e-07 Score=81.77 Aligned_cols=157 Identities=12% Similarity=-0.025 Sum_probs=89.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHHHcCC
Q 044815 448 LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA----GL-FPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 522 (675)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +. .....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777744444331 1234556666777777777777777777766651 11 1123456666667777777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcC
Q 044815 523 ISSAVKYFQRMNQI----GCAP--DNITYGALISGLCKQSKLDEACQFYESMIGK----GISP-CEVTRVTLAYEYCKQG 591 (675)
Q Consensus 523 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g 591 (675)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++.++. +... ...++..++..|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777765542 1011 1234566666677777777777777776532 1110 0123355666777777
Q ss_pred CHHHHHHHHHHHhh
Q 044815 592 DSATAMIILESLDK 605 (675)
Q Consensus 592 ~~~~A~~~~~~~~~ 605 (675)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=80.57 Aligned_cols=109 Identities=16% Similarity=-0.009 Sum_probs=69.1
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 493 KFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
..|+++.+... .+...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|+..|+++++
T Consensus 8 ~~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 83 (148)
T 2vgx_A 8 GTIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-- 83 (148)
T ss_dssp CSHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred hhHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 34444444321 234455666667777777777777777776642 22466666677777777777777777777776
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 573 ISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 573 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.|+ ...+..++.+|...|++++|...|++...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3343 35566677777777777777777776544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=9.4e-07 Score=74.48 Aligned_cols=114 Identities=16% Similarity=0.036 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHH
Q 044815 540 PDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLI 616 (675)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 616 (675)
.+...+..+...+...|++++|...|++.++. .|+ ...+..++.+|...|++++|...+++... +.+...|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45778888888899999999999999998874 343 56777888888899999999998888765 34667788888
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHH
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQN----VDRVSLAALKNACY 655 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~ 655 (675)
.++...|++++|+..|+++++..|. .+......+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999888877654 23444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.2e-07 Score=80.21 Aligned_cols=120 Identities=14% Similarity=-0.027 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--C
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGIS-PC--------------EVTRVTLAYEYCKQGDSATAMIILESLDK--K 606 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 606 (675)
.+..+...+...|++++|...|++.++.... |+ ...+..++.+|.+.|++++|+..+++... +
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555555666666666666666552111 10 14566677777788888888887777654 3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 044815 607 LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 607 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
.+...+..++.+|...|++++|+..|+++++..|. +...+..++.++...++.+++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888877 7778888888888777777766
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-07 Score=75.31 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-C-------hhh
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK-L-W-------IRT 611 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~-------~~~ 611 (675)
...+..+...+.+.|++++|+..|+++++ +.|+ ...+..++.+|.+.|++++|++.+++.... | . ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34667777888888888888888888877 4454 455667778888888888888877775431 1 1 124
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
|..++.++...|++++|++.|+++++ ..||+.+...+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 56677777777788888887777654 55666555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-06 Score=69.36 Aligned_cols=109 Identities=18% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..++..+...|++++|...++++++. .| +...+..++..|...|++++|...+++... +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345556666677777777777777777663 23 345566677777777777777777777554 2356677788888
Q ss_pred HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
+...|++++|...++++++.+|. +...+..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHh
Confidence 88888899999999888888887 66666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-06 Score=73.04 Aligned_cols=112 Identities=16% Similarity=0.048 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC----EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNT 614 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 614 (675)
+...+..+...+...|++++|...|++.++ ..|+ ...+..++..|.+.|++++|+..+++... +.+...|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 455667777777777888888888887777 4455 35566677778888888888888877654 335667778
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 615 LIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
++.++...|++++|...|+++++.+|. +...+..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHh
Confidence 888888888888898888888888877 6666666655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.3e-05 Score=73.70 Aligned_cols=177 Identities=10% Similarity=0.030 Sum_probs=116.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-C-CHHH
Q 044815 165 EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELG-LVEYAEEVFDEMCARGVCADASSYKLMVVAYCRM-G-RVTE 241 (675)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 241 (675)
..+..++|++++.+++..+ |-+..+|+.--.++...| .+++++++++.+.... +-+..+|+.-..++.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445567777888887765 556677888888888888 5999999999998874 45788888887777776 6 8889
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 044815 242 ADRWLSAMLDRGAILDNATLTLLITAFCDKGFRG-----SIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGW----- 311 (675)
Q Consensus 242 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 311 (675)
++++++++.+.... |...|+.-.-.+.+.+... .+.++++..+++.+..+. |..+|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 99999999876433 5555544333333221001 123677777777766443 66677766666666665
Q ss_pred --HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 044815 312 --TEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK 347 (675)
Q Consensus 312 --~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 347 (675)
++++++.+++.+... +-|...|+.+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 566677766666543 3455566655554444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.6e-05 Score=73.18 Aligned_cols=242 Identities=8% Similarity=0.001 Sum_probs=132.5
Q ss_pred HHHHHHHHHH---HHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcC
Q 044815 402 IYAYNAIIDG---LCKKGRVQ-EAYELLKKAFQRELQADKITYTILLSEHLKQAE----------TKQALGLFCRMVKAG 467 (675)
Q Consensus 402 ~~~~~~li~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~ 467 (675)
+..|..+... ..+.|.++ +|+++++.++..+ +.+..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 3444444333 33455544 7888888888753 2344556554444433332 466777777776654
Q ss_pred CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHH
Q 044815 468 LNPDIHAYTTLIAAFCRQK--KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN-ISSAVKYFQRMNQIGCAPDNIT 544 (675)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~ 544 (675)
+-+..+|+.-.-.+.+.+ .++++..+++.+.+... .|...|+.-...+...|. ++++++.++++.+.. .-|...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 335666666666666666 36777777777776653 466666666666666666 467777777777643 234556
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc-----------CCHHHHHH
Q 044815 545 YGALISGLCKQ--------------SKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQ-----------GDSATAMI 598 (675)
Q Consensus 545 ~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~-----------g~~~~A~~ 598 (675)
|+.....+.+. +.++++++.++.++. ..|+. ..++.+-..+.+. +.++++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 66555554443 345666666666666 33433 3333333333333 23455666
Q ss_pred HHHHHhh-CCChhhHHHHHHH-----HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 599 ILESLDK-KLWIRTVNTLIRK-----LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 599 ~~~~~~~-~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
.++++.. .|+. .|..+..+ ....|..++....+.++++.+|. ...-|..+.
T Consensus 260 ~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~ 316 (331)
T 3dss_A 260 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHH
T ss_pred HHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHH
Confidence 5555543 2221 23222111 12345556666666666666665 444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-06 Score=71.71 Aligned_cols=94 Identities=19% Similarity=0.139 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 044815 508 ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYE 586 (675)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 586 (675)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..++++++ +.|+ ...+..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 345555566666666666666666665532 22355566666666666666666666666665 2332 3455556666
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 044815 587 YCKQGDSATAMIILESLD 604 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~ 604 (675)
|...|++++|...+++..
T Consensus 82 ~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 82 QIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHH
Confidence 666666666666666543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.4e-07 Score=78.43 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=89.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 044815 483 CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG-LCKQSKL--D 559 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 559 (675)
...|++++|...+++..+... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 456788888888888887643 467788888888888999999999998887743 2356677777777 7788888 8
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 560 EACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 560 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+|...++++++. .|+ ...+..++..|...|++++|...++++..
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 899999888873 343 46667788888889999999998888665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=73.03 Aligned_cols=97 Identities=11% Similarity=-0.036 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
+...+..++..+.+.|++++|...+++.... .+...|..++..+...|++++|+..++++++..+. +...+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3467788999999999999999999997663 46778899999999999999999999999999988 89999999999
Q ss_pred HHhcCchhHHHHHHHHHHhc
Q 044815 654 CYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 654 ~~~~g~~~~A~~~~~~~~~~ 673 (675)
+...|++++|.+.++++++.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=91.27 Aligned_cols=118 Identities=10% Similarity=-0.036 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD----------------NITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
...|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4455666666666666666666666666532 22 23444444455555555555555555544
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHH
Q 044815 571 KGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMA 628 (675)
Q Consensus 571 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 628 (675)
+.| +...++.++.+|.+.|++++|+..|+++.+ +.+...+..+..++.+.|+.++|
T Consensus 346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 222 223344444444444444444444444433 12233344444444444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=70.47 Aligned_cols=96 Identities=7% Similarity=-0.187 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC 654 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 654 (675)
...+..++..+...|++++|...+++... +.+...+..++..+...|++++|...++++++.+|. +...+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 45677889999999999999999999765 346778899999999999999999999999999988 899999999999
Q ss_pred HhcCchhHHHHHHHHHHhc
Q 044815 655 YESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 655 ~~~g~~~~A~~~~~~~~~~ 673 (675)
...|++++|.+.++++++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.48 E-value=7.4e-06 Score=71.40 Aligned_cols=128 Identities=14% Similarity=0.044 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYG 376 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 376 (675)
..+..+...+...|++++|...|.+.++.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345555666666666666666666665533 2345556666666666666666666666665542 2245555666666
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 044815 377 HCKVGNFERAYDLMDLMGKEGCTPNIYAYNA--IIDGLCKKGRVQEAYELLKKA 428 (675)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~ 428 (675)
+...|++++|...+++..+.. +.+...+.. ++..+.+.|++++|.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666665543 223333322 222344555666665555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=73.40 Aligned_cols=61 Identities=15% Similarity=-0.043 Sum_probs=39.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcC-------CCCCCHHHH----HHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGK-------DQNVDRVSL----AALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.|..++.++.+.|++++|+..++++++. +|. +...| ...+.++...|++++|...++++++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566666666666666666666666665 665 56666 6667777777777777777766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=84.27 Aligned_cols=192 Identities=14% Similarity=0.024 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
...+..+...+.+.|++++|...|++.++.. +.+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444555555555555555555555555432 2244555555555555555555555555555442 2345555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+...|++++|...|+++.+.+.. +...+...+....+. .++.. +..........+......+.. + ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 66666666666666665543210 000111111111111 11111 111222222333333332222 2 24666777
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHh
Q 044815 562 CQFYESMIGKGISPCEVTR-VTLAYEYCKQ-GDSATAMIILESLD 604 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~-g~~~~A~~~~~~~~ 604 (675)
++.++++++ ..|+.... ..+...+.+. +.+++|.++|+++.
T Consensus 155 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 155 LEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777666665 34544333 3333334443 55666777776554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=76.27 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=84.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLA 584 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 584 (675)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45678888999999999999999999998853 33678899999999999999999999999998 4454 56778899
Q ss_pred HHHHHcCCHHHHHHHHHHHhh
Q 044815 585 YEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+|.+.|++++|...|++...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-06 Score=73.93 Aligned_cols=95 Identities=17% Similarity=-0.015 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 044815 508 ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYE 586 (675)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 586 (675)
..+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|+++++. .|+ ...+..++.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHH
Confidence 345555666667777777777777766642 224556666666777777777777777777663 332 3455666777
Q ss_pred HHHcCCHHHHHHHHHHHhh
Q 044815 587 YCKQGDSATAMIILESLDK 605 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~ 605 (675)
|...|++++|.+.|++...
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-06 Score=83.40 Aligned_cols=123 Identities=7% Similarity=0.057 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT--------------KETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
+...+..+...+.+.|++++|...|+++++...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666677777777777777777666432211 245555555555555555555555555553
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 044815 537 GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 537 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 596 (675)
. +.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..++.++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 12344555555555555555555555555555 2332 23444455555555555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=75.50 Aligned_cols=129 Identities=14% Similarity=0.002 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC----hh
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGIS-PCE----VTRVTLAYEYCKQGDSATAMIILESLDK----KLW----IR 610 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~ 610 (675)
++..+...+...|++++|...+++.++.... ++. ..+..++..|...|++++|.+.+++... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555566666666666555542000 011 2444556666666666666666665433 111 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN-----VDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+..++..+...|++++|...++++++.... ....++..++.++...|++++|.+.++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566777777778888888777777654211 1134677788888888888888888888765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-05 Score=65.74 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYG 376 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 376 (675)
..+..+...+...|++++|.+.|.++++.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 344455555555555555555555554432 2234445555555555555555555555554432 1234444455555
Q ss_pred HHhcCCHHHHHHHHHHHhhc
Q 044815 377 HCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~ 396 (675)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00019 Score=69.42 Aligned_cols=220 Identities=11% Similarity=0.060 Sum_probs=126.6
Q ss_pred hcCCH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 379 KVGNF-ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGR----------VQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 379 ~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
+.|.+ ++|+++.+.+...+ +-+..+|+.--..+...+. +++++.+++.++..+ +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44544 36777777777654 3344445543333333332 566777777776653 34666666666666
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----
Q 044815 448 LKQA--ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK-MKESEKFFQEAITAGLFPTKETYTSMICGYLRD---- 520 (675)
Q Consensus 448 ~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 520 (675)
...+ .+++++.+++.+.+.. +-+..+|+.-.-.+...|. ++++.+.+.++++..+ -|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence 6666 3677777777777764 3466666666666666666 4777777777776654 4666666665555444
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCH-H
Q 044815 521 ----------GNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ-----------SKLDEACQFYESMIGKGISPCE-V 578 (675)
Q Consensus 521 ----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~-~ 578 (675)
+.++++++.+.+..... +-|...|+.+-..+.+. +.++++++.++++++ +.||. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccch
Confidence 34667777777776632 22455565444444443 346677777777776 44543 2
Q ss_pred HHHHHHH---HHHHcCCHHHHHHHHHHHhh
Q 044815 579 TRVTLAY---EYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 579 ~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+..++. .....|..+++...++++.+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 2222221 11234556666666666654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.6e-06 Score=84.40 Aligned_cols=92 Identities=5% Similarity=-0.116 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh----CC----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCC---CCCC---HH
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK----KL----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKD---QNVD---RV 645 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~---~~ 645 (675)
+..++..|...|++++|..+++++.. .. ....+..++..|...|++++|..++++++... +.|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 34445555555555555555544322 00 12234445555555555555555555444321 1111 12
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.+..++..+...|++++|...+.++.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444555555555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-05 Score=66.66 Aligned_cols=118 Identities=12% Similarity=-0.035 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
...+..+...+...|++++|.+.|++.+... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3444555555555666666666665555432 2344455555555555555665555555555432 123445555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGR 417 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 417 (675)
.+...|++++|...+++..+.. +.+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555555555442 2244444444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.8e-06 Score=69.77 Aligned_cols=103 Identities=15% Similarity=0.039 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCC---hhhHHHHH
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISPCE----VTRVTLAYEYCKQGDSATAMIILESLDK--KLW---IRTVNTLI 616 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~ 616 (675)
..+...+...|++++|...|+++++.. |+. ..+..++.+|.+.|++++|...++++.. +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 446677889999999999999998843 333 4677888999999999999999998765 233 55678888
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
.++.+.|++++|+..|+++++..|. +........
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPG-SDAARVAQE 117 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHHH
Confidence 9999999999999999999998887 555544433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=8e-06 Score=67.74 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHH
Q 044815 510 YTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-N---ITYGALISGLCKQSKLDEACQFYESMIGKGISPC----EVTRV 581 (675)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~ 581 (675)
+..+...+...|++++|...|+++.+.. |+ . ..+..+..++...|++++|...|+++++. .|+ ...+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHH
Confidence 3456677788888888888888887743 33 2 46677788888888888888888888873 343 45567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 582 TLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.++.+|.+.|++++|...|+++..
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888888888765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-06 Score=69.63 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=76.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTL 583 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 583 (675)
.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...++++++. .| +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 456778888888888888888888888887753 234677888888888888888888888888873 34 34667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 044815 584 AYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.+|...|++++|...++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=86.63 Aligned_cols=146 Identities=10% Similarity=0.008 Sum_probs=71.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYE 586 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 586 (675)
...+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...+..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666677777778888888888877663 344331 112222232222110 1256667777
Q ss_pred HHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCchhHH
Q 044815 587 YCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA-CYESNKYALF 663 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A 663 (675)
|.+.|++++|+..++++.. +.+...|..++.+|...|++++|+..|+++++..|. +...+..+..+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888777777654 335667777777788888888888888887777776 66666666665 3345566677
Q ss_pred HHHHHHHHh
Q 044815 664 SDLSQRIAE 672 (675)
Q Consensus 664 ~~~~~~~~~ 672 (675)
.++++++++
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.9e-06 Score=68.06 Aligned_cols=94 Identities=17% Similarity=0.292 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHH
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG--CAPD----NITYGALI 549 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l~ 549 (675)
..+...+.+.|++++|...|+++++..+ .+...|..+..+|.+.|++++|+..+++.++.. ..++ ..+|..+.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344444444444444444444444321 233344444444444444444444444443311 0011 12334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 044815 550 SGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.++...|++++|++.|++.++
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 444445555555555554444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.7e-06 Score=70.06 Aligned_cols=97 Identities=14% Similarity=-0.109 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDKK-LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
+...+..++..+...|++++|.+.|++.... ++ ...|..++..+...|++++|+..++++++..|. +...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 4567788999999999999999999998763 44 567888999999999999999999999999888 88999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhc
Q 044815 651 KNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 651 ~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+.++...|++++|.+.++++++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.6e-06 Score=66.97 Aligned_cols=96 Identities=7% Similarity=-0.148 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CC--ChhhHHHHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KL--WIRTVNTLIRKL 619 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~~l~~~~ 619 (675)
.+..+...+...|++++|...++++++... .+...+..++..|...|++++|.+.+++..+ +. +...|..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344455555555555555555555554211 1233344444455555555555555544433 12 233444444444
Q ss_pred Hcc-CCHHHHHHHHHHHhcCCC
Q 044815 620 CSE-KRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 620 ~~~-g~~~~A~~~~~~~~~~~~ 640 (675)
.+. |++++|++.++++++.+|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHhCCHHHHHHHHHHHhhccc
Confidence 444 555555555555444444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.5e-06 Score=72.74 Aligned_cols=116 Identities=13% Similarity=0.010 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGK--------GI--------SPCE-VTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~--------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
...+......+.+.|++++|+..|++.++. .. .|.. ..+..++.+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999999873 00 2222 466778899999999999999999876
Q ss_pred h--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcC
Q 044815 605 K--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR-VSLAALKNACYESN 658 (675)
Q Consensus 605 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 658 (675)
. +.+...|..++.+|...|++++|+..|+++++.+|. +. .....+..+....+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence 5 456778899999999999999999999999999887 66 44555555444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.5e-06 Score=69.96 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CC-------hhhH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--LW-------IRTV 612 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-------~~~~ 612 (675)
...+..+...+...|++++|...++++++.. +.+...+..++..|...|++++|...++++... .+ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567778888899999999999999998743 124567778888999999999999999886552 12 5677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYES 657 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 657 (675)
..++..+...|++++|...|+++++ ..|+...+..+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 8888889999999999999998876 667877777666654443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=5e-06 Score=68.23 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 622 (675)
..+...+.+.|++++|+..|+++++ ..| +...+..++.++...|++++|+..+++... +.+...|..++.++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445566677777777777777776 334 345556677777777777777777777544 33566777777888888
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 044815 623 KRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~ 641 (675)
|++++|+..++++++.+|.
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 8888888888888877664
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.6e-06 Score=72.12 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=80.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQI--------GC--------AP-DNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
....+......+.+.|++++|+..|++..+. .. .| +...|..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3557788888999999999999999998874 00 12 2357888888999999999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 569 IGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 569 ~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
++ +.|+ ...+..++.+|...|++++|...|++...
T Consensus 90 l~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 90 LK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 98 4454 56778899999999999999999998765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=71.20 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=71.4
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 554 KQSKLDEACQFYESMIGKGI-SPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
..|++++|+..|+++++.+. .|+ ...+..++.+|.+.|++++|+..++++.+ +.+...+..++.++.+.|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46889999999999998431 243 35667889999999999999999999765 446778888999999999999999
Q ss_pred HHHHHHhcCCCCCCHHH
Q 044815 630 LFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~ 646 (675)
..++++++..|. +...
T Consensus 82 ~~~~~al~~~p~-~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSD-DETI 97 (117)
T ss_dssp HHHHHHHHHHCC-CHHH
T ss_pred HHHHHHHHhCCC-cHHH
Confidence 999999998886 5444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-05 Score=66.64 Aligned_cols=111 Identities=7% Similarity=0.055 Sum_probs=86.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGI--SPC----EVTR 580 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~ 580 (675)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888889999999999999999988753 34677888899999999999999999999987421 122 5677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRK 618 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 618 (675)
..++..|.+.|++++|.+.++++.. .++...+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7889999999999999999998765 3455555444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.5e-06 Score=72.27 Aligned_cols=130 Identities=16% Similarity=0.040 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGC-APD----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EV 578 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~ 578 (675)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++.++. +..+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555555566666666666655543210 011 135556666677777777777777776542 11111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK----KLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
.+..++..+...|++++|.+.+++... ..+ ...+..++..+...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455667777777777777777776543 111 334667788888888888888888887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=90.05 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=52.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
.+.|++++|.+.|+++++ +.|+ ...+..++.+|.+.|++++|++.+++..+ +.+...|..++.+|.+.|++++|+
T Consensus 17 ~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444444 2222 23344444444445555555544444433 123444555555555555566666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHH--HHhcCchhHHHHHHH
Q 044815 630 LFFHKLLGKDQNVDRVSLAALKNA--CYESNKYALFSDLSQ 668 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 668 (675)
+.|+++++.+|. +...+..++.+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666555555554 34444444444 555566666655555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=70.81 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=60.4
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 044815 519 RDGNISSAVKYFQRMNQIGC-AP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 595 (675)
..|++++|+..|++..+.+. .| +...+..+..+|...|++++|+..|+++++. .|+ ...+..++.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 35778888888888887431 13 3456777888888888888888888888874 343 4666778888888888888
Q ss_pred HHHHHHHHhh
Q 044815 596 AMIILESLDK 605 (675)
Q Consensus 596 A~~~~~~~~~ 605 (675)
|+..+++...
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.27 E-value=6.9e-06 Score=82.28 Aligned_cols=138 Identities=10% Similarity=-0.018 Sum_probs=96.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAY 585 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 585 (675)
...+..+...+.+.|++++|+..|++..+. .++.. .... .++..+ ..| +...+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHH
Confidence 445666666777777777777777666541 00000 0000 111111 222 2356677888
Q ss_pred HHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHH
Q 044815 586 EYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALF 663 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 663 (675)
+|.+.|++++|+..++++.+ +.+...|..++.+|...|++++|+..|+++++..|. +...+..+..++...++.+++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888765 346677888999999999999999999999999888 888899999999888888877
Q ss_pred HHH
Q 044815 664 SDL 666 (675)
Q Consensus 664 ~~~ 666 (675)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.8e-06 Score=65.00 Aligned_cols=95 Identities=11% Similarity=-0.072 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN-VDRVSLAALKNACY 655 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~ 655 (675)
.+..++..+...|++++|...++++.+ +.+...|..++..+...|++++|+..++++++..+. .+...+..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 344555666666666666666666543 234455566666666666666666666666665543 13555666666666
Q ss_pred hc-CchhHHHHHHHHHHhc
Q 044815 656 ES-NKYALFSDLSQRIAEG 673 (675)
Q Consensus 656 ~~-g~~~~A~~~~~~~~~~ 673 (675)
.. |++++|.+.++++++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 66 6666666666666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.7e-06 Score=70.02 Aligned_cols=94 Identities=14% Similarity=-0.060 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHHcCCHHHHHHHHHHHhh-------
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISPC--------E-----VTRVTLAYEYCKQGDSATAMIILESLDK------- 605 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 605 (675)
......+.+.|++++|+..|++.++ +.|+ . ..|..++.++.+.|++++|+..+++...
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344445555555555555555554 2232 1 2555566666666666666666666432
Q ss_pred --CCChhhH----HHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 606 --KLWIRTV----NTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 606 --~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+...| ...+.++...|++++|+..|+++++..|.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2345566 88888888899999999999988877664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-05 Score=71.51 Aligned_cols=94 Identities=13% Similarity=-0.050 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHH
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKL 619 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 619 (675)
..|..+..+|...|++++|+..++++++. .| +...+..++.+|...|++++|.+.|++... +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45666666777777777777777777663 33 345566677777777777777777776544 23455666666666
Q ss_pred HccCCHHHHH-HHHHHHhcC
Q 044815 620 CSEKRVGMAA-LFFHKLLGK 638 (675)
Q Consensus 620 ~~~g~~~~A~-~~~~~~~~~ 638 (675)
...++.+++. ..+.++...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 6666666555 444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.5e-05 Score=79.36 Aligned_cols=198 Identities=8% Similarity=-0.058 Sum_probs=123.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQRELQADK----------------ITYTILLSEHLKQAETKQALGLFCRMVKAG-LNP 470 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p 470 (675)
-...+.+.|++++|.+.|.++.+....... ..+..++..|...|++++|.+.+..+.+.- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999999988876433211 236677788888888888888887766531 111
Q ss_pred CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-
Q 044815 471 DIH----AYTTLIAAFCRQKKMKESEKFFQEAITA----GLFP-TKETYTSMICGYLRDGNISSAVKYFQRMNQI--GC- 538 (675)
Q Consensus 471 ~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~- 538 (675)
+.. +.+.+...+...|+.+.|..++...... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 2223333344567788888887776532 2112 2446677777888888888888888776542 11
Q ss_pred -CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 539 -APD-NITYGALISGLCKQSKLDEACQFYESMIGK--GIS-P-C--EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 539 -~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+. ..++..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...|.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 121 346677777788888888888888776642 111 1 1 12334455666677788888777776655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=9.1e-06 Score=84.58 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 480 AAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLD 559 (675)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 559 (675)
..+.+.|++++|.+.|+++.+... .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 344556666666666666665432 245566666666666666666666666666532 123455666666666666666
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHH--HHHcCCHHHHHHHHH
Q 044815 560 EACQFYESMIGKGISPC-EVTRVTLAYE--YCKQGDSATAMIILE 601 (675)
Q Consensus 560 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 601 (675)
+|.+.|+++++. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666652 232 1233333333 555566666666655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-05 Score=65.70 Aligned_cols=112 Identities=13% Similarity=-0.029 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 044815 521 GNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK----QGDSATA 596 (675)
Q Consensus 521 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 596 (675)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +......|+..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46677888888777766 33333 5556666667777888888777754 35666777777777 6777777
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCC
Q 044815 597 MIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 640 (675)
.++|++..+..+...+..|...|.. .+++++|+.+|+++.+.|.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777777776777777777777777 6777777777777777753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.6e-05 Score=79.57 Aligned_cols=171 Identities=6% Similarity=-0.078 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN----------ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS- 556 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 556 (675)
.++|.+.++++++.+. -+..+|+.-...+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 4566777777776543 245556665555555555 778888888877743 224667777777777777
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc----------
Q 044815 557 -KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQG-DSATAMIILESLDK--KLWIRTVNTLIRKLCSE---------- 622 (675)
Q Consensus 557 -~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---------- 622 (675)
++++++++++++++.... +...|..-...+.+.| .++++++.++++.+ +.+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888874322 3456666667777777 77888888777655 34677777766666552
Q ss_pred ----CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhH
Q 044815 623 ----KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYAL 662 (675)
Q Consensus 623 ----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 662 (675)
+++++|++++++++..+|. |...|..+...+.+.+++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5689999999999999999 99999999999998887554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-06 Score=68.29 Aligned_cols=92 Identities=11% Similarity=-0.135 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCC------HHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVD------RVSLA 648 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~ 648 (675)
...+..++..+.+.|++++|++.+++... +.+...|..++.++.+.|++++|+..++++++..|. + ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 44566677777777888888877777654 345667888888888999999999999999888887 5 66778
Q ss_pred HHHHHHHhcCchhHHHHHHHH
Q 044815 649 ALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 649 ~l~~~~~~~g~~~~A~~~~~~ 669 (675)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888777665544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=8.2e-05 Score=62.49 Aligned_cols=108 Identities=15% Similarity=0.031 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHH
Q 044815 557 KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFF 632 (675)
Q Consensus 557 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 632 (675)
++++|...|++..+.|. |+. . |+..|...+..++|.++|++..+..+...+..|+..|.. .+++++|+++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 44555555555555442 111 1 445555555555555555555555555555555555554 45555555555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHh
Q 044815 633 HKLLGKDQNVDRVSLAALKNACYE----SNKYALFSDLSQRIAE 672 (675)
Q Consensus 633 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 672 (675)
+++.+.+ +...+..|+..|.. .+++++|.++++++.+
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5555543 44555555555555 5555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=79.92 Aligned_cols=149 Identities=10% Similarity=-0.012 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG 551 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 551 (675)
...+..+...+.+.|++++|...|+++++.. |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5567788888889999999999999988753 44331 223344444433221 1367888889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH-HHccCCHHH
Q 044815 552 LCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK-LCSEKRVGM 627 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~~~ 627 (675)
|.+.|++++|+..++++++ +.| +...++.++.+|...|++++|...|+++.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 445 456788899999999999999999999765 3355566666665 334667888
Q ss_pred HHHHHHHHhcCCCC
Q 044815 628 AALFFHKLLGKDQN 641 (675)
Q Consensus 628 A~~~~~~~~~~~~~ 641 (675)
+...|++++...|.
T Consensus 318 a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 318 QKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------
T ss_pred HHHHHHHhhCCCCC
Confidence 99999999888775
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.6e-05 Score=78.91 Aligned_cols=130 Identities=8% Similarity=0.079 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT--------------KETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
....+..+...+.+.|++++|...|+++++...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456788889999999999999999999988543221 578899999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 044815 537 GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMI-ILESL 603 (675)
Q Consensus 537 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~-~~~~~ 603 (675)
. +.+...|..+..+|...|++++|+..|+++++ +.|+. ..+..+..++.+.|+.++|.+ .+.+|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33577889999999999999999999999998 55644 466778888888888887764 44444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=62.88 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC-CCCHHHHHHHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ-NVDRVSLAALKNA 653 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~ 653 (675)
...+..++..|.+.|++++|+..|+++.. +.+...|..++.+|.+.|++++|+..|+++++..+ .++......+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 45667777777888888888887777654 33566777777778788888888888877776644 2344555555544
Q ss_pred HHhcC
Q 044815 654 CYESN 658 (675)
Q Consensus 654 ~~~~g 658 (675)
+...+
T Consensus 87 l~~~~ 91 (100)
T 3ma5_A 87 KLKAE 91 (100)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 44443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.3e-05 Score=78.26 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=47.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQI---GCAPD----NITYGALISGLCKQSKLDEACQFYESMIGK-----GI-SPCE-VTR 580 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~~-~~~ 580 (675)
..+..+|++++|+.++++..+. -+.|+ ..+++.|...|...|++++|..+++++++- |. .|+. .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3445667777777766665432 11122 235666666677777777777776666531 21 1211 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
+.|+..|...|++++|..++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-05 Score=63.71 Aligned_cols=98 Identities=15% Similarity=0.084 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 559 DEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 559 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
++|+..|+++++. .| +...+..++..|...|++++|+..+++... +.+...|..++.+|...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577888888873 34 356777888899999999999999988765 345677888888999999999999999998
Q ss_pred hcCCCC-CCHHHHHHHHHHHHhcC
Q 044815 636 LGKDQN-VDRVSLAALKNACYESN 658 (675)
Q Consensus 636 ~~~~~~-p~~~~~~~l~~~~~~~g 658 (675)
++..+. .+......+...+...+
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhc
Confidence 877653 24445555544444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00026 Score=75.01 Aligned_cols=147 Identities=10% Similarity=-0.040 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044815 522 NISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSK----------LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQ 590 (675)
Q Consensus 522 ~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 590 (675)
..++|++.++++.+. .|+ ...|+.-..++...|+ +++++..++++++...+ +..+|..-.+.+.+.
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 446889999999985 465 5677777777777777 99999999999984322 456778888889999
Q ss_pred C--CHHHHHHHHHHHhh--CCChhhHHHHHHHHHccC-CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------
Q 044815 591 G--DSATAMIILESLDK--KLWIRTVNTLIRKLCSEK-RVGMAALFFHKLLGKDQNVDRVSLAALKNACYES-------- 657 (675)
Q Consensus 591 g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 657 (675)
| +++++++.++++.+ +.+..+|+.-..++.+.| .+++++++++++++.+|. |...|...+.++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 9 77999999999876 357889999999999999 899999999999999999 999999999988874
Q ss_pred ------CchhHHHHHHHHHHh
Q 044815 658 ------NKYALFSDLSQRIAE 672 (675)
Q Consensus 658 ------g~~~~A~~~~~~~~~ 672 (675)
++++++.+.++++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHh
Confidence 667999999988875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.9e-05 Score=76.79 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHcc
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (675)
..+..+...+.+.|++++|+..|+++++ +.+... .....+++.+ ..+.....|..++.+|.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGAK-----LQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHGG-----GHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 3456666667777777777777777665 111100 0001111000 1122456788999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 623 KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
|++++|+..++++++.+|. +...+..++.+|...|++++|.+.++++++.
T Consensus 287 g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998 8999999999999999999999999999763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-05 Score=68.21 Aligned_cols=80 Identities=15% Similarity=0.018 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC----------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-
Q 044815 592 DSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR----------VGMAALFFHKLLGKDQNVDRVSLAALKNACYESN- 658 (675)
Q Consensus 592 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 658 (675)
.+++|++.+++... +.+...|..++.++.+.|+ +++|+..|+++++.+|+ +..+|..++.+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcc
Confidence 34444444444332 2244444444444444443 67999999999999999 8999999999999875
Q ss_pred ----------chhHHHHHHHHHHh
Q 044815 659 ----------KYALFSDLSQRIAE 672 (675)
Q Consensus 659 ----------~~~~A~~~~~~~~~ 672 (675)
++++|.+.++++++
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHH
Confidence 89999999999986
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.93 E-value=7.5e-05 Score=57.14 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..+..++..+...|++++|...+++... +.+...|..++..+.+.|++++|+..++++++.+|. +...+..++.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 4556667777777777777777777544 335667778888888889999999999998888887 7888888887776
Q ss_pred hcC
Q 044815 656 ESN 658 (675)
Q Consensus 656 ~~g 658 (675)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=75.83 Aligned_cols=127 Identities=7% Similarity=-0.070 Sum_probs=86.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHH
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAG---LFP----TKETYTSMICGYLRDGNISSAVKYFQRMNQI-----GC-APD-NIT 544 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~ 544 (675)
+..+...|++++|..++++.++.. +.+ ...+++.|...|...|++++|..++++..+. |- .|+ ..+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 455677899999999998877531 112 2457888999999999999999999987642 21 233 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGK---GISPCEV----TRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
++.|...|...|++++|+.+++++++- -+-|++. +...+..++...|.+++|..++.++..
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999988751 1123321 223344555556666666666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.5e-05 Score=61.70 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=55.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-------EV 578 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~ 578 (675)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 34556666667777777777777777766642 22456666677777777777777777777776 3343 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIIL 600 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~ 600 (675)
.+..++.++...|+.+.|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 3444555555555554444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=58.65 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
+|+..|++..+.. +.+...+..+...+...|++++|+..|+++++. .|+ ...+..++.+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677788877643 335677888888888999999999999998873 343 456778888889999999999888886
Q ss_pred hh
Q 044815 604 DK 605 (675)
Q Consensus 604 ~~ 605 (675)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=6.8e-05 Score=63.27 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=57.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 044815 518 LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL----------DEACQFYESMIGKGISPC-EVTRVTLAYE 586 (675)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 586 (675)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++.++ +.|+ ...++.++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 34455666666666666532 22455666666666665543 355555555555 3343 2344445555
Q ss_pred HHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 587 YCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
|...|.+ .+.+. ...|++++|+++|+++++.+|+ +..
T Consensus 90 y~~lg~l-----------~P~~~----------~a~g~~~eA~~~~~kAl~l~P~-~~~ 126 (158)
T 1zu2_A 90 YTSFAFL-----------TPDET----------EAKHNFDLATQFFQQAVDEQPD-NTH 126 (158)
T ss_dssp HHHHHHH-----------CCCHH----------HHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHhccc-----------Ccchh----------hhhccHHHHHHHHHHHHHhCCC-CHH
Confidence 5444322 00000 0025899999999999999887 543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00031 Score=55.01 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
+...+..+..+|...|++++|+..|+++++. .|+ ...+..++.+|.+.|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666777777777777777777777763 332 3456667777777777777777777654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0004 Score=52.89 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 609 IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
...|..++..+...|++++|+..++++++.+|. +...+..++.++...|++++|.+.++++++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456788899999999999999999999999988 8899999999999999999999999998763
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00031 Score=54.71 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=33.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh--CCChh-hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDK--KLWIR-TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+..+.+.|++++|...++++.+ +.+.. .|..++.++...|++++|+..|+++++.+|.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34445555666666665555433 22344 5556666666666666666666666666655
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00062 Score=52.17 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 576 CEVTRVTLAYEYCKQGD---SATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+...+..++.++...++ .++|..++++..+ +.+...+..++..+.+.|++++|+.+|+++++.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44556666666654443 5777777777654 345666777777777788888888888887777664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00074 Score=68.48 Aligned_cols=83 Identities=11% Similarity=-0.110 Sum_probs=45.8
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CCC---hhhHHHHH
Q 044815 554 KQSKLDEACQFYESMIGK---GISPCE----VTRVTLAYEYCKQGDSATAMIILESLDK-------KLW---IRTVNTLI 616 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~---~~~~~~l~ 616 (675)
..|++++|+.++++.++. -+.|++ .+++.|+.+|...|++++|..++++... +.. ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567888888888887652 222332 3445566666666666666666665432 011 22345555
Q ss_pred HHHHccCCHHHHHHHHHHHh
Q 044815 617 RKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~ 636 (675)
..|...|++++|+.+|++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 55555555555555555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0047 Score=51.44 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhCC----ChhhHHHHHHHHHccCCHHHHHH
Q 044815 558 LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQG---DSATAMIILESLDKKL----WIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
...+.+-|.+..+.|. ++..+...+++++++.+ +.++++.+++.+.+.. ....+..+.-++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445555665555544 46667777777777776 5557777777765532 23445667777788888888888
Q ss_pred HHHHHhcCCCCCCHH
Q 044815 631 FFHKLLGKDQNVDRV 645 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~ 645 (675)
+++++++..|. |..
T Consensus 93 y~~~lL~ieP~-n~Q 106 (152)
T 1pc2_A 93 YVRGLLQTEPQ-NNQ 106 (152)
T ss_dssp HHHHHHHHCTT-CHH
T ss_pred HHHHHHhcCCC-CHH
Confidence 88888888776 543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00098 Score=51.77 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=53.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV-SLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..+..+.+.|++++|+..|+++++.+|. +.. .+..++.++...|++++|.+.++++++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3566788999999999999999999998 888 9999999999999999999999998863
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.004 Score=63.19 Aligned_cols=91 Identities=9% Similarity=-0.069 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CCC---h
Q 044815 547 ALISGLCKQSKLDEACQFYESMIGK---GISPCE----VTRVTLAYEYCKQGDSATAMIILESLDK-------KLW---I 609 (675)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~---~ 609 (675)
..+..+...|++++|+.++++.++. -+.|++ .+++.|+..|...|++++|+.+++++.. +.. .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 4455667788999999999888853 122332 3456677777777888887777776543 111 2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
.+++.|+..|...|++++|+.+++++++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3466677777777777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.002 Score=65.27 Aligned_cols=87 Identities=9% Similarity=-0.049 Sum_probs=68.9
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHH
Q 044815 519 RDGNISSAVKYFQRMNQI---GCAPD----NITYGALISGLCKQSKLDEACQFYESMIGK-----GI-SPCE-VTRVTLA 584 (675)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~~-~~~~~l~ 584 (675)
..|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++++- |. .|+. .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 578999999999987652 22343 357899999999999999999999998852 32 2333 4668899
Q ss_pred HHHHHcCCHHHHHHHHHHHhh
Q 044815 585 YEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..|...|++++|..++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.035 Score=62.05 Aligned_cols=135 Identities=12% Similarity=0.062 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 34557777777764322 4567777778888888888888887777643 33444455556666665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 562 CQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.++-+.+...|. +.....+|.+.|++++|.+++. +.+++++|..+.++ .++
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~-------------------~~~~~~~A~~lA~~---~~~- 777 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI-------------------KSQRFSEAAFLGST---YGL- 777 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH-------------------HTTCHHHHHHHHHH---TTC-
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH-------------------HcCChHHHHHHHHH---hCC-
Confidence 555555544331 1122234555666666655444 44566666665554 222
Q ss_pred CCH----HHHHHHHHHHHhcCchh
Q 044815 642 VDR----VSLAALKNACYESNKYA 661 (675)
Q Consensus 642 p~~----~~~~~l~~~~~~~g~~~ 661 (675)
.. .....+...+...|+.+
T Consensus 778 -~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 778 -GDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp -CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred -ChHHHHHHHHHHHHHHHhccchh
Confidence 23 34444455555566543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.027 Score=54.74 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRV 581 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 581 (675)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++.. +.|...++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 456666666666666677777777777777753 6666666667777777777777777777777 556655543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0062 Score=61.78 Aligned_cols=97 Identities=12% Similarity=-0.031 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQI---GCAPD----NITYGALISGLCKQSKLDEACQFYESMIGK-----G-ISP 575 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p 575 (675)
.....+..+.+.|++++|+.++++..+. -+.|+ ..+++.++.+|...|++++|+.+++++++- | ..|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3344456677899999999999998753 12333 347889999999999999999999998752 2 123
Q ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 576 CE-VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 576 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+. .+++.|+..|...|++++|..++++...
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 32 4567899999999999999998887654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0024 Score=53.13 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhh--CCChhhHHHHHHHHHccC---CHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCchhHHHHH
Q 044815 593 SATAMIILESLDK--KLWIRTVNTLIRKLCSEK---RVGMAALFFHKLLGKD-QNVDRVSLAALKNACYESNKYALFSDL 666 (675)
Q Consensus 593 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 666 (675)
+..+.+.|.+... .++..+...+++++++.+ +.++++.+++..++.+ |.-+..++..|+.+|++.|++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3445555555443 456778888999999988 6679999999999987 522577899999999999999999999
Q ss_pred HHHHHh
Q 044815 667 SQRIAE 672 (675)
Q Consensus 667 ~~~~~~ 672 (675)
++++++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999986
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.012 Score=46.17 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---------CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDKK---------LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
...+..++..+.+.|+++.|...++...+. .....+..++.++.+.|++++|+.+++++++..|. +....
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 445566677777777777777777665431 12456778888888888888888888888888887 66655
Q ss_pred HHHH
Q 044815 648 AALK 651 (675)
Q Consensus 648 ~~l~ 651 (675)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.057 Score=60.24 Aligned_cols=45 Identities=20% Similarity=0.122 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 448 LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA 498 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (675)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455566555553221 24556666666666666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.028 Score=54.62 Aligned_cols=65 Identities=11% Similarity=-0.164 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444444444444455555555555555542 44444444445555555555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.62 E-value=1.2 Score=49.08 Aligned_cols=263 Identities=11% Similarity=0.049 Sum_probs=128.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--C-----CCHHHHHHHHHH
Q 044815 341 GYCKEEKMNRAEMLLERMKEQGLLPNTN--TYTSLIYGHCKVGNFERAYDLMDLMGKEGC--T-----PNIYAYNAIIDG 411 (675)
Q Consensus 341 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----~~~~~~~~li~~ 411 (675)
+....|+.++++.++......+-..+.. .=..+.-+....|..+++..++.......- . +....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455677777777766654321112222 222333334445554566766666554310 0 111122233333
Q ss_pred HHhcCC-HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcC
Q 044815 412 LCKKGR-VQEAYELLKKAFQRELQADK--ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLI--AAFCRQK 486 (675)
Q Consensus 412 ~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g 486 (675)
++-.|. -+++.+.+..++.... ... ..-..+...++..|+.+-...++..+.+.. +......+. -++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2455666666554321 111 112233344556677777777777666532 333333333 3344668
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 487 KMKESEKFFQEAITAGLFPTKETY--TSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
+.+.+..+.+.+.... .|....- .++..+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888877776631 1222211 133445667778766666777776531 11222222223334446666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhCCChh
Q 044815 565 YESMIGKGISPCEVTRVTLAYEYCKQGDS-ATAMIILESLDKKLWIR 610 (675)
Q Consensus 565 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~ 610 (675)
++.+.+.+ .|...--..++.+....|.. .+|...+..+...++..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 66665543 23222222334444444443 56777888877655543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.077 Score=49.33 Aligned_cols=149 Identities=12% Similarity=0.032 Sum_probs=98.7
Q ss_pred HHHHHHHHHc-CCHHHHHHH-----HHHHHHCCCCCC---HHHHHHHHHH-HHhc--C------CHHHHHHHHHHHHhCC
Q 044815 511 TSMICGYLRD-GNISSAVKY-----FQRMNQIGCAPD---NITYGALISG-LCKQ--S------KLDEACQFYESMIGKG 572 (675)
Q Consensus 511 ~~li~~~~~~-g~~~~A~~~-----~~~m~~~~~~p~---~~~~~~l~~~-~~~~--g------~~~~A~~~~~~~~~~g 572 (675)
...+.+++.. ..+.++++- +...... +.|+ ...|..++.+ +... | ...+|...+++.++
T Consensus 115 ~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle-- 191 (301)
T 3u64_A 115 RYALSSLETAYPGFTREVFSGDEQRLHKVLSR-CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD-- 191 (301)
T ss_dssp HHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTT-CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCccHHHHHHhcchhhHHHHHHH-cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--
Confidence 3455555543 555544432 2333332 3343 3356655553 3332 3 25678888888888
Q ss_pred CCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHhh-CC--ChhhHHHHHHHHHcc-CCHHHHHHHHHHHhcCCC
Q 044815 573 ISPC---EVTRVTLAYEYCKQ-----GDSATAMIILESLDK-KL--WIRTVNTLIRKLCSE-KRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 573 ~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 640 (675)
+.|+ ...+..++..|.+. |+.++|.+.|++... .| ++.++..++..++.. |+.++|.+++++++..++
T Consensus 192 LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 192 LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 6676 35677788888884 999999999999765 33 377888888988884 899999999999999988
Q ss_pred C--CCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 641 N--VDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 641 ~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
. |+....+. +.-++|..+++++
T Consensus 272 ~~~P~~~lan~--------~~q~eA~~LL~~~ 295 (301)
T 3u64_A 272 ESVPHNKLLVI--------LSQKRARWLKAHV 295 (301)
T ss_dssp GGCSSCHHHHH--------HHHHHHHHHHHTH
T ss_pred CCCCChhHHHH--------HHHHHHHHHHHHh
Confidence 8 77544333 3345777666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.019 Score=43.68 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 541 DNITYGALISGLCKQSK---LDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
|...+..+..++...++ .++|..++++.++ ..|+. .....++..+.+.|++++|+..|+++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 4555555555555 33322 3334445555555555555555555443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.026 Score=52.42 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHc-C
Q 044815 523 ISSAVKYFQRMNQIGCAPD---NITYGALISGLCKQ-----SKLDEACQFYESMIGKGISPC--EVTRVTLAYEYCKQ-G 591 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~-g 591 (675)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++.++ +.|+ ..+++..+..|+.. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5678888899888 4677 45889999889884 999999999999999 6663 67778888989885 9
Q ss_pred CHHHHHHHHHHHhh
Q 044815 592 DSATAMIILESLDK 605 (675)
Q Consensus 592 ~~~~A~~~~~~~~~ 605 (675)
+.++|.+.+++...
T Consensus 255 d~~~a~~~L~kAL~ 268 (301)
T 3u64_A 255 NRAGFDEALDRALA 268 (301)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc
Confidence 99999999999876
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.34 E-value=1.7 Score=47.79 Aligned_cols=249 Identities=11% Similarity=0.049 Sum_probs=119.6
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHh
Q 044815 379 KVGNFERAYDLMDLMGKEGCTPN--IYAYNAIIDGLCKKGRVQEAYELLKKAFQREL-------QADKITYTILLSEHLK 449 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~~~~ 449 (675)
..|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++...+...- .+....-.++.-++.-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 34555555555554433110112 22333344455556665667777766554321 0111111222223332
Q ss_pred cCC-HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH--HHHHcCCHH
Q 044815 450 QAE-TKQALGLFCRMVKAGLNPDIH--AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMIC--GYLRDGNIS 524 (675)
Q Consensus 450 ~~~-~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~ 524 (675)
.|. -+++.+.+..+.... .+... .-.+|...++..|+-+....++..+.+. .+..+...+.. ++...|+.+
T Consensus 466 ~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChH
Confidence 232 245555555555432 11111 1122333344567777777777766653 23333333333 344667777
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAPDNI-TYG---ALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVT--LAYEYCKQGDSATAMI 598 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p~~~-~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~--l~~~~~~~g~~~~A~~ 598 (675)
.+..+++.+... .+.. -|. .+.-+|+..|+.....++++.+.+. ++..+... ++.++...|+.+.+.+
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 777777777652 2322 222 2334566777776666677777763 22222222 3334445666666666
Q ss_pred HHHHHhhCCChhhH--HHHHHHHHccCCH-HHHHHHHHHHhc
Q 044815 599 ILESLDKKLWIRTV--NTLIRKLCSEKRV-GMAALFFHKLLG 637 (675)
Q Consensus 599 ~~~~~~~~~~~~~~--~~l~~~~~~~g~~-~~A~~~~~~~~~ 637 (675)
+++.+.+..+..+- ..+.-+....|+. .+|+..+.++..
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77666554443332 2233333334433 567777777753
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.017 Score=45.13 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 609 IRTVNTLIRKLCSEKRVGMAALFFHKLLGKD------QNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...+..++..+.+.|+++.|...|+++++.. ..+....+..|+.++.+.|++++|..+++++++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445678999999999999999999988742 123577899999999999999999999999875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.025 Score=45.23 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=71.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhhCCC----hhhHHHHHHHHHc
Q 044815 549 ISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSAT---AMIILESLDKKLW----IRTVNTLIRKLCS 621 (675)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~----~~~~~~l~~~~~~ 621 (675)
+..-........+.+-|.+....|. |+..+...+++++.+..+.++ ++.+++.+.+... ......++-++.+
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333444556667777777766554 677888889999999887766 8888888776542 2334667788999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
.|++++|+++++.+++..|. |...
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~-n~QA 110 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQ-NNQA 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 99999999999999999987 6443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.057 Score=43.15 Aligned_cols=89 Identities=17% Similarity=0.095 Sum_probs=59.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDE---ACQFYESMIGKGISP--CEVTRVTLAYEYCK 589 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~ 589 (675)
...........+.+-|.+....| .++..+--.+..++.+..+..+ ++.+++.+.+.+ .| .....+.|+-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 33334444555666666665544 3666666667778888776665 788888887753 13 23455678888888
Q ss_pred cCCHHHHHHHHHHHhh
Q 044815 590 QGDSATAMIILESLDK 605 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~ 605 (675)
.|++++|.+.++.+.+
T Consensus 87 lg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ 102 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888888888888655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.56 Score=37.50 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=26.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+..+...|+-|+-.+++..++. +..|++..+..++.+|.+.|+..+|.+++.++.+
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344445555554445444333 2223455555555555555555555555555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.32 Score=39.85 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCH------HHHHHHHH-HHHHcCCHHHHHHHHHHHhh--
Q 044815 541 DNITYGALISGLCKQSKL------DEACQFYESMIGKGISPCE------VTRVTLAY-EYCKQGDSATAMIILESLDK-- 605 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-- 605 (675)
|..+|-..+...-+.|++ ++.+++|+++... ++|+. .++..+-. .+...++.++|.++|+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 456666666666666777 7777778777653 44432 11111111 12345788888888888754
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 606 KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
+.....|...+..-.+.|+++.|.+++.+++..+++| ...+.+.+.
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 2335667777777788999999999999999999984 455554443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.97 Score=38.57 Aligned_cols=101 Identities=12% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 305 GLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFE 384 (675)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 384 (675)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 344566666666665443 3455666666666666776666666666543 233344455556665
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 385 RAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427 (675)
Q Consensus 385 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 427 (675)
+-.++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555544444443 123333444455666666666544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=1.1 Score=38.33 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESE 492 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (675)
.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4455555555554443 2344555555555555555555555544421 222333333344444444
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 493 KFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
++-+.....| -++.....+...|++++++++|.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 4333333322 12333334444555555555553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.84 Score=36.54 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
|.+++..++..+.... .+..-||.+|--....-+.+-..++++.+-+-. |. ...|++......
T Consensus 21 G~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHHHHHH
T ss_pred hhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHHHHHH
Confidence 6677777777776654 245555555555555555555555555543221 11 122333333333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044815 355 LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL 433 (675)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 433 (675)
+-.+- .+...+...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-++|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32221 12333444555666667767666666665432 256666666677777777777777777777666654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.21 E-value=5e-05 Score=74.83 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAII 409 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 409 (675)
.+..||-.+-.+|...+.+.-|.-.--.++-. +| -...++..|-..|-+++-+.+++.-.... ......|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 46678888888888888877766554444321 11 12335667888888888888888766322 35677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 044815 410 DGLCKKGRVQEAYELLKKAFQR-ELQA------DKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~~~~~~A~ 457 (675)
-.|++- +.++..+.++....+ +++. ....|.-++-.|++-.+++.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 887775 455555555443322 1111 1223555555555555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.18 Score=40.96 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhhC-C--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 572 GISPCEVTRVTLAYEYCKQGDSA---TAMIILESLDKK-L--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 572 g~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
+-.|+..+...+++++.+..+.+ +++.+++.+.+. + .......+.-++.+.|++++|+++.+.+++..|. |..
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~Q 112 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 112 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHH
Confidence 34577888889999999988665 577788887653 2 2334567788899999999999999999999998 644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.29 E-value=5.1 Score=40.48 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH--HH
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKE--GCTPN---IYAYNAIIDGLCKKGRVQEAYELLKKAFQ----RELQADK--IT 439 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~~ 439 (675)
..|...|...|++.+|..++..+... |.... ...+...++.|...+++..|..+++++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44566666677777777777665431 21111 23455556666667777777766666432 1112221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 440 YTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 440 ~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455556666666666666665554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.51 Score=50.80 Aligned_cols=52 Identities=10% Similarity=-0.098 Sum_probs=43.2
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
..|...|+++-|+++.+++...-|. +..+|..|+.+|...|+|+.|+-.++-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4456688888899988888888887 888999999999999999888877664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.2 Score=40.18 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhhC-C--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 572 GISPCEVTRVTLAYEYCKQGDSA---TAMIILESLDKK-L--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 572 g~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
+-.|+..+-..+++++.+..+.+ +++.+++.+.+. + ....+..++-++.+.|++++|+++.+.+++..|. |..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~-N~Q 113 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 113 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT-CHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-CHH
Confidence 45577788888999999988664 577788877653 2 2345677888899999999999999999999998 654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.54 Score=38.56 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG 537 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 537 (675)
+++++|.++|+.++...-.- ...|.....--.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 44444444444443321111 3334334444444555555555555544443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.38 E-value=5.6 Score=37.88 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=108.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHH
Q 044815 137 IVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMV----IEMTNNGLPLITSTLNRVVGIACELGLVEY-AEEVF 211 (675)
Q Consensus 137 ~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~ 211 (675)
-.+...+.+.+++++|.+++..-...+.+.|+...|.++. +-..+.+++++......|+..+.....-+- =..+.
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi 118 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFV 118 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 3555667889999999999999899999999998887776 444567888999888888888876654221 12233
Q ss_pred HHHh----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044815 212 DEMC----ARG--VCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLE 285 (675)
Q Consensus 212 ~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 285 (675)
+++. +.| ..-|+.....+...|.+.+++.+|..-|- .|-.+....|..++..|...+ + .
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~--~-~-------- 183 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD--E-S-------- 183 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS--C-G--------
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc--C-C--------
Confidence 3332 222 22367777788889999999999887763 233333466766666665542 1 0
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 286 EMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.+++...-..++ -|.-.+++..|..+|+...+
T Consensus 184 ------~e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 ------HTAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------GGHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------ccHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 012233333333 45567888888887766553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.03 E-value=1.3 Score=51.20 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=98.9
Q ss_pred HHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044815 102 TVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTN 181 (675)
Q Consensus 102 ~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 181 (675)
.++..+...+.+..+..+..|....+ ..-...|.++...|++++|.+.|.....+............-+..+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~------~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDP------IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCH------HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCc------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34445555566677777777765432 122466778888888888887776543322221111111111122221
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCC
Q 044815 182 NG--LPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADA----SSYKLMVVAYCRMGRVTEADRWLSAMLDRGAI 255 (675)
Q Consensus 182 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 255 (675)
.. ...-..-|..++..+-+.|.++.+.++-....+...+.+. ..|..+.......|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 11 1122345778888899999999998887776653222222 2578888999999999999999888876543
Q ss_pred CCHHHHHHHHHHHHhc
Q 044815 256 LDNATLTLLITAFCDK 271 (675)
Q Consensus 256 ~~~~~~~~ll~~~~~~ 271 (675)
-......++..+|..
T Consensus 970 -r~~cLr~LV~~lce~ 984 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQ 984 (1139)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhC
Confidence 456667777777765
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.80 E-value=8.8 Score=36.28 Aligned_cols=170 Identities=13% Similarity=0.018 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHH
Q 044815 136 YIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSM----VIEMTNNGLPLITSTLNRVVGIACELGLVE-YAEEV 210 (675)
Q Consensus 136 y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~ 210 (675)
|-.+...+.+.+++++|.+++..-...+.+.|+...|.++ ++-..+.+++++......++..+.....-+ .=.++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~f 115 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDV 115 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHH
Confidence 3355666788999999999999989999999998888776 444556788999988888888876643222 12233
Q ss_pred HHHHh----hCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044815 211 FDEMC----ARGV--CADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELL 284 (675)
Q Consensus 211 ~~~~~----~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 284 (675)
.+++. +.|- .-|+.....+...|.+.|++.+|..-|-. |-.-+...+..++..+......|...+
T Consensus 116 i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e----- 186 (312)
T 2wpv_A 116 ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDST----- 186 (312)
T ss_dssp HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcch-----
Confidence 33333 2221 23778888888999999999998876642 111134455555554444200011111
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 285 EEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.+...-.. +-.|.-.|+...|..+|+...+
T Consensus 187 ---------~dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 187 ---------VAEFFSRL-VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp ---------HHHHHHHH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 12222222 2335567889998888887653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.66 E-value=0.54 Score=35.29 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 624 RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 624 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
+.=+..+-++.+...+.-|++....+.+.+|.+.+++.-|.++++.+..|||
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~ 76 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 76 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4446677777888888888999999999999999999999999998888876
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.54 E-value=3.1 Score=33.80 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044815 255 ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD 326 (675)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 326 (675)
.|+..+--.+..++.+.....+..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 455555555555666654445666777788877765433233444556677888888888888888877743
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.52 E-value=9.5 Score=36.07 Aligned_cols=113 Identities=10% Similarity=0.067 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKY----FQRMNQIGCAPDNITYGALI 549 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~ 549 (675)
.|.++..-|.+.+++++|.+++..-.. .+.+.|+...|.++ ++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555666667777777776654332 23444554444433 33344456666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 550 SGLCKQSKLD-EACQFYESMI----GKG--ISPCEVTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 550 ~~~~~~g~~~-~A~~~~~~~~----~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
..+..-..-+ .=.++.++++ +.| ..-++..+..++..|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6554422111 1233444443 222 12255667777888888888888777554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.46 E-value=1.5 Score=35.14 Aligned_cols=72 Identities=11% Similarity=-0.044 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 254 AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 254 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
..|+..+--.+..++.+.....+..+++.+++++.+.+..-....+--|.-++.+.|++++|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345555555555555565444466677777777776543223444555667788888888888888777764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.40 E-value=16 Score=36.79 Aligned_cols=189 Identities=12% Similarity=0.136 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH----Hhc
Q 044815 310 GWTEKAFRLFLKLVRS----DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ-GLLPNTNTYTSLIYGH----CKV 380 (675)
Q Consensus 310 g~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~----~~~ 380 (675)
|+++.|++.+..+.+. ............++..|...++++...+.+..+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6677777766555432 222334555667777777777777776666555432 322222 22222222 122
Q ss_pred CCHHHH--HHHHHHHhh--cC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHH
Q 044815 381 GNFERA--YDLMDLMGK--EG-CTPN---IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA-D----KITYTILLSEH 447 (675)
Q Consensus 381 g~~~~A--~~~~~~m~~--~g-~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~ 447 (675)
...+.. ..+.+.... .| +... ......|...|...|++.+|.+++.++...-... + ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221111 111111100 01 1111 1222345555666666666666666654221111 1 12344445555
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 448 LKQAETKQALGLFCRMVK----AGLNPD--IHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556666666655555432 111111 12334444455555555555555555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=3.8 Score=40.58 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHH
Q 044815 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCA-----RGVCADASS 225 (675)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 225 (675)
....++..+...|++++|+..+..+.... |.+...+..++.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33445556666677777776666665553 55666666777777777777777766666543 355555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.26 E-value=13 Score=35.44 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLF 460 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~ 460 (675)
-|+.....+...|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34555555666666666666665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.07 E-value=2.1 Score=46.15 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=15.1
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHc
Q 044815 442 ILLSEHLKQAE-TKQALGLFCRMVKA 466 (675)
Q Consensus 442 ~li~~~~~~~~-~~~A~~~~~~m~~~ 466 (675)
.++..+...++ .+.|+.+++++.+.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~ 278 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK 278 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh
Confidence 34444444444 56777777777765
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.49 E-value=1.9 Score=36.06 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..-+.++.+|.+.|+.++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3445566677777777777777776644
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=1.2 Score=44.38 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHh-----cCCCCCCHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLL-----GKDQNVDRVSLAALK 651 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l~ 651 (675)
....++..+...|+.++|...++.+.. +.+...|..++.+|.+.|+..+|++.|+++. +.|..|.+.+-...-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344566777888888888888877654 3366678888888888888888888888764 358888877665554
Q ss_pred HHH
Q 044815 652 NAC 654 (675)
Q Consensus 652 ~~~ 654 (675)
.++
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.08 E-value=11 Score=43.39 Aligned_cols=144 Identities=12% Similarity=0.098 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------C
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA--------------------G 502 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------~ 502 (675)
++..+...+..+-+.++.... +.+...--.+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555444433221 223333334555566666777776666554210 0
Q ss_pred --CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 503 --LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN----ITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 503 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
...-..-|..++..+.+.+.++.++++-+...+..-..+. ..|..+..++...|++++|...+-.+-+...+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 0011233555666666667777776666655543211111 14566666677777777776666666553332
Q ss_pred HHHHHHHHHHHHHcCCH
Q 044815 577 EVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~ 593 (675)
......|+..+|..|..
T Consensus 971 ~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 34445555555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.20 E-value=1.6 Score=34.70 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
.=+..+-++.+...+.-|++....+.+.+|.+.+|+.-|.++++.+..|||
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~ 119 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 119 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 334566677777888888999999999999999999999999998888876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=87.05 E-value=4e-05 Score=75.51 Aligned_cols=239 Identities=13% Similarity=0.101 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044815 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFC 483 (675)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 483 (675)
+|..|..++.+.+++.+|++.|-+ ..|+..|..++.+..+.|.+++-+.++...++..-.| ..=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 344555555555555555443311 1233445555555555555555555554444332222 22234555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------CCCCCCHH
Q 044815 484 RQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ--------------------IGCAPDNI 543 (675)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------~~~~p~~~ 543 (675)
+.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+.. ..-..+..
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 5555544333221 13444444444555555555544444433211 01123556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHc
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCS 621 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 621 (675)
||..+-.+|...+.+.-|...--.++-. || ....++..|...|-+++-+.+++.-.. +.....++-|+-.|++
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 8888888999999888776654444421 22 122356678889999999999988654 3466778888888877
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
- +.++-++.++.... .++. -.++++|-+..-|.++.=++.+
T Consensus 276 Y-~PeKlmEHlklf~s-riNi-----pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 276 F-KPQKMREHLELFWS-RVNI-----PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp S-CTTHHHHHHTTSSS-SSCC-----TTTHHHHTTTTCHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHH-hccH-----HHHHHHHHHHhhHHHHHHHHhc
Confidence 5 45555555443222 1111 1367789999999888876654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.07 E-value=5.4 Score=33.40 Aligned_cols=122 Identities=7% Similarity=-0.104 Sum_probs=64.3
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 536 IGCAPDNIT--YGALISGLCKQSKLDEACQFYESMIGK-GISPCE-------VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 536 ~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.|+.|.... +-.-+..+...|.++.|+-+.+.++.. +..|+. .++..+++++...|++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 355555443 344566678888999988888876532 112221 2456678888889999988888888543
Q ss_pred C----C-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 606 K----L-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 606 ~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
. + .......+. -...... ..+...+...-..++.+|.+.|++++|..+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 0 110110110 0000000 0011124455566888888888888888888765
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.22 E-value=11 Score=28.38 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 528 KYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 528 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
+-++.+....+.|++....+.+++|.+.+++..|.++++-.
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.57 E-value=4.7 Score=36.87 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHcCCHHHHHHHHHHH-hhCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 586 EYCKQGDSATAMIILESL-DKKL-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+.+.|++++|+..+..- ...| +...-..++..||-.|+++.|.+-++.+.+.+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 456778888888866654 4444 5555667888888888888888888888887775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 675 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 49/357 (13%), Positives = 106/357 (29%), Gaps = 16/357 (4%)
Query: 308 KKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNT 367
+ G E A R ++L R + V + I + + +++R+ + P
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI--HFQCRRLDRSAHFSTLAIK--QNPL- 65
Query: 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427
G+ + + P+ + E
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 428 AFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK 487
+ + + L + ++A + + ++ N A++ L F Q +
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGE 184
Query: 488 MKESEKFFQEAITAGLFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYG 546
+ + F++A+T L P + Y ++ AV + R + + +G
Sbjct: 185 IWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HG 241
Query: 547 ALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESL-- 603
L +Q +D A Y I + P LA ++G A A +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 604 DKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKY 660
++N L + + A + K L + + L + + K
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKL 355
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 0.004
Identities = 20/194 (10%), Positives = 44/194 (22%), Gaps = 36/194 (18%)
Query: 404 AYNAIIDGLCKKGRVQEAYE-----------------------------LLKKAFQRELQ 434
+ + + +Q+ Y+ L+ +
Sbjct: 22 SKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRAN 81
Query: 435 ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEK 493
++ LS L+ A L ++ + L +Q K
Sbjct: 82 PNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVK 141
Query: 494 FFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN-ITYGALISGL 552
+ + + + S A Y++ Q+ P N Y L
Sbjct: 142 PQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA 196
Query: 553 CKQSKLDEACQFYE 566
+ +Y
Sbjct: 197 SSKGDHLTTIFYYC 210
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 675 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.42 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.34 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.17 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.76 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.32 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.29 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.1 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.02 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.81 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.79 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.78 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.82 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.27 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.9 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.9 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=8.3e-22 Score=199.48 Aligned_cols=374 Identities=14% Similarity=0.098 Sum_probs=274.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
|++++|++.++++.+..+ -+..++..+...|.+.|++++|.+.|++.++.. +.+..+|..+...+.+.|++++|+..
T Consensus 13 G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccccccccc
Confidence 567777777777666532 245667777777777777777777777776643 33456677777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 355 LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ 434 (675)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 434 (675)
+....+.... +..............+....+........... .................+....+...+.+..... +
T Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (388)
T d1w3ba_ 90 YRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-c
Confidence 7777765332 44444444444445555555555554444433 2344444555566666777777777777766543 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 514 (675)
.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+++...... .+...+..+.
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 244 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHH
Confidence 455667777778888888888888888877753 34567788888888888888888888888887643 4667777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 594 (675)
..+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..++..|.+.|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHH
Confidence 88888999999999998888742 2246778888888999999999999998887742 234566777888899999999
Q ss_pred HHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 595 TAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 595 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
+|++.+++..+ +.+..+|..++.+|.+.|++++|+..|+++++.+|+ +...|..++.+|.+.||
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 99999998765 345678899999999999999999999999999998 89999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-21 Score=198.38 Aligned_cols=360 Identities=15% Similarity=0.088 Sum_probs=305.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG 381 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 381 (675)
+...+.+.|++++|.+.++++++.. +-+...+..+...+.+.|++++|+..|++..+... -+..++..+...|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhc
Confidence 5567889999999999999998764 34678899999999999999999999999988633 36788999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
++++|...+....+.. +.+..............+....+........... .................+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHH
Confidence 9999999999998875 4455666666666667777777777666665543 3445555666677788888999998888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 541 (675)
...... +.+...+..+...+...|++++|...+++..+... -+...|..+...+...|++++|+..+++....+ ..+
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 887764 44678888899999999999999999999988653 357789999999999999999999999998754 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+.+.|++++|...|+++++ +.|+ ...+..++..|...|++++|.+.++.... +.+...+..++..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHH
Confidence 77888899999999999999999999998 4454 46778899999999999999999998765 3466788999999
Q ss_pred HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+.+.|++++|+..|+++++..|+ +..++..++.+|.+.|++++|.+.++++++
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 899999999999999999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.7e-14 Score=141.14 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=135.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK 486 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 486 (675)
.....+.+.|++++|...|+++++.. +.+..+|..+..++...|++++|+..+++..+.. +-+...+..++..+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45666778888888888888888764 3456677788888888888888888888877764 345677777788888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q 044815 487 KMKESEKFFQEAITAGLFPTKET----------------YTSMICGYLRDGNISSAVKYFQRMNQIGC-APDNITYGALI 549 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~ 549 (675)
++++|.+.++++.... |+... ....+..+...+.+.+|...+.+..+... .++...+..+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 8888888888877643 22111 01111222333445555555555444211 12344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHH
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVG 626 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 626 (675)
..+...|++++|+..+++.+.. .|+ ...+..++..|.+.|++++|.+.++++.+ +.+..+|..++.+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence 5555555666666655555542 222 34445555555555555555555555433 234445555555555555555
Q ss_pred HHHHHHHHHhcCCCC
Q 044815 627 MAALFFHKLLGKDQN 641 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~ 641 (675)
+|+..|+++++..|+
T Consensus 258 ~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 258 EAVEHFLEALNMQRK 272 (323)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCc
Confidence 555555555555444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.7e-14 Score=139.76 Aligned_cols=229 Identities=12% Similarity=0.130 Sum_probs=185.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 372 SLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
.....+.+.|++++|...|+++.+.. +-+..+|..+..++...|++++|...|++.++.. +.+...|..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667889999999999999999875 5568899999999999999999999999998864 346788888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNP--------------DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-FPTKETYTSMICG 516 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~ 516 (675)
++++|.+.++.+....... +.......+..+...+...+|...+.++.+... ..+...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999999998753110 001111223344556778889999988887542 2456788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 595 (675)
+...|++++|+..+++..... +-+...|..+..++...|++++|.+.|+++++ +.|+ ...+..++.+|.+.|++++
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998753 23477899999999999999999999999998 4554 4677889999999999999
Q ss_pred HHHHHHHHhh
Q 044815 596 AMIILESLDK 605 (675)
Q Consensus 596 A~~~~~~~~~ 605 (675)
|++.|++...
T Consensus 259 A~~~~~~al~ 268 (323)
T d1fcha_ 259 AVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=9.3e-10 Score=108.14 Aligned_cols=199 Identities=13% Similarity=0.069 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHH
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGL----FPTKETYTSMICGYLRDGNISSAVKYFQRMNQI--GCAPD----NIT 544 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~ 544 (675)
+..+...+...|+++.+...+........ ......+..+...+...+++.++...+.+.... ..... ...
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 33444555555666666655555544211 111223344444455556666655555544321 01111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhh----C----CChhhHH
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGKGISPC---EVTRVTLAYEYCKQGDSATAMIILESLDK----K----LWIRTVN 613 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~ 613 (675)
+..+...+...|++++|...+++..+.....+ ...+..++..|...|++++|...++++.. . .....+.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 34444455666666666666666554321111 13334456666666666666666665432 0 1233456
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCC--------CCHHHHHHHHHHHHhcCchhHHHHH-HHHHHhc
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQN--------VDRVSLAALKNACYESNKYALFSDL-SQRIAEG 673 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 673 (675)
.++..|.+.|++++|.+.++++++.... -....+..++..+...++.+++.+. .+++++.
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll~~ 364 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 364 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence 6666677777777777777766553211 0123445566667777777777554 5555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=7.2e-10 Score=108.94 Aligned_cols=265 Identities=11% Similarity=-0.019 Sum_probs=184.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQRELQAD----KITYTILLSEHLKQAETKQALGLFCRMVKAGL-NPD----IHAYTTL 478 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l 478 (675)
....+...|++++|.+++++.++.....+ ...+..+...+...|++++|+..+++..+... .++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 44556667777777777777766432222 23455666777777777777777776654210 111 2345566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHH
Q 044815 479 IAAFCRQKKMKESEKFFQEAITA----GLFPT---KETYTSMICGYLRDGNISSAVKYFQRMNQIGC----APDNITYGA 547 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ 547 (675)
...+...|++..+...+.+.... ..... ...+..+...+...|+++.+...+........ ......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 77788889999999888876642 11111 23556677888999999999999998876321 222446666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--C----ChhhHHHH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGK----GISPC--EVTRVTLAYEYCKQGDSATAMIILESLDKK--L----WIRTVNTL 615 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~~l 615 (675)
....+...+++.++...+.+.... +..+. ...+..++..+...|+.++|...+++.... . ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 777788899999999988877642 11111 123455677888999999999999986542 1 23345678
Q ss_pred HHHHHccCCHHHHHHHHHHHhcC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGK----DQNV-DRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+..+...|++++|...+++++.. +..| ...++..++.+|...|++++|.+.++++++
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999988743 2222 345788999999999999999999999875
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=6e-10 Score=107.17 Aligned_cols=164 Identities=9% Similarity=0.116 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA-ETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
..|+.+...+.+.+.+++|+++++++++.+ +-+...|+....++...| ++++|+..++..++.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 345555555666666666666666666642 234445555555555544 3566666666665553 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSK---- 557 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---- 557 (675)
+.+.|++++|...++++++... .+...|..+...+.+.|++++|+..++++++.. +-+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 6666666666666666665432 345566666666666666666666666666532 1234455555544444443
Q ss_pred --HHHHHHHHHHHHh
Q 044815 558 --LDEACQFYESMIG 570 (675)
Q Consensus 558 --~~~A~~~~~~~~~ 570 (675)
+++|+..+.++++
T Consensus 200 ~~~~~ai~~~~~al~ 214 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK 214 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHH
Confidence 3455555555555
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=4.4e-09 Score=100.90 Aligned_cols=186 Identities=13% Similarity=0.037 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 487 KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYE 566 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 566 (675)
..++|..+|++.++...+.+...|...+..+.+.|++++|..+|+++.+.........|..++..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34566666666665433334455666666666666666776666666653222223456666666666666677777776
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC-C
Q 044815 567 SMIGKGISPCEVTRVTLAYE-YCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN-V 642 (675)
Q Consensus 567 ~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p 642 (675)
++++.+.. +...+...+.. +...|+.+.|.++|+.+.+ +.+...|..++..+.+.|+++.|+.+|++++...+. |
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 66654322 22233333332 2334666666666666554 234556666666666677777777777776665442 1
Q ss_pred --CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 643 --DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 643 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
....|..++..-...|+.+.+.++.+++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1345666666556667777777666666553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.4e-09 Score=102.82 Aligned_cols=198 Identities=10% Similarity=0.072 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044815 367 TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG-RVQEAYELLKKAFQRELQADKITYTILLS 445 (675)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 445 (675)
...|+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..+++.++.. +.+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4466777777888889999999999999875 556778888888888876 4899999999988764 456788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN--- 522 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 522 (675)
.+.+.|++++|+..++++++.. +-+...|..+...+.+.|++++|...++++++.++ .+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccch
Confidence 9999999999999999998875 45788899999999999999999999999998754 367788887777776665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 523 ---ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 523 ---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
+++|+..+.+..+.. +.+...|..+...+. ....+++.+.++...+
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHH
Confidence 578888888888743 235667776665554 4446788888888876
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=2.6e-09 Score=99.71 Aligned_cols=223 Identities=8% Similarity=-0.102 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 418 VQEAYELLKKAFQRELQA---DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKF 494 (675)
Q Consensus 418 ~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (675)
.+.++.-+++........ ...+|..+...|.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344444455554432111 12355566667777777777777777777653 34567777777778888888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 495 FQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGIS 574 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 574 (675)
|+++.+... -+..++..+..+|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+..........
T Consensus 94 ~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 94 FDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 887777543 245567777777778888888888888777643 223444333444455555555555555555442221
Q ss_pred CCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 575 PCEVTRVTLAYEYCKQGD----SATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 575 p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
+ ... .++..+..... .+.+...+..... +....+|..++..|...|++++|+..|++++..+|. +.+-+
T Consensus 172 ~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 246 (259)
T d1xnfa_ 172 Q--WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NFVEH 246 (259)
T ss_dssp S--THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TCHHH
T ss_pred h--hhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 1 111 11222211111 1222221111111 122346777899999999999999999999999887 54444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=1.9e-10 Score=112.29 Aligned_cols=275 Identities=12% Similarity=0.033 Sum_probs=190.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH---hc-------CCHHHHHHHHHHHHhCCCCCCHHHH
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLC---KK-------GRVQEAYELLKKAFQRELQADKITY 440 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---~~-------g~~~~A~~~~~~~~~~~~~~~~~~~ 440 (675)
..++......+..++|.++++...+.. |-+...|+..-..+. .. |++++|+.+++..++.+ +.+...|
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 333333333344589999999888764 334455554444433 32 23678888888888753 4466667
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044815 441 TILLSEHLKQA--ETKQALGLFCRMVKAGLNPDIHAYT-TLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGY 517 (675)
Q Consensus 441 ~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 517 (675)
..+..++...+ ++++|+..+.++.+.. +++...+. .....+...+..++|...++.+++.++ -+...|+.+...+
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~ 188 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 77766666654 5888999998888864 34455544 445667778889999999988888764 4677888888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044815 518 LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAM 597 (675)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 597 (675)
.+.|++++|...+++..+. .|+. ..+...+...+..+++...+...+.... ++...+..++..+...|+.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHH
Confidence 8999888887776655542 2221 2233345566777788888888877432 22334556677788888899999
Q ss_pred HHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 598 IILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 598 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
..+.+..+. .+...|..++.++...|++++|+++|+++++.+|. +...|..|...+.-
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHhH
Confidence 888887653 34667788888899999999999999999998886 77788877766654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=2.8e-10 Score=111.06 Aligned_cols=259 Identities=6% Similarity=-0.047 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---HHhc-------CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044815 348 MNRAEMLLERMKEQGLLPN-TNTYTSLIYG---HCKV-------GNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416 (675)
Q Consensus 348 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~-------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 416 (675)
.++|++++++.++. .|+ ...|+..-.. +... |++++|+.+++...+.. +.+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 46666666666653 233 3334332222 2222 22556666666665543 334555555555555544
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 417 --RVQEAYELLKKAFQRELQADKITY-TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEK 493 (675)
Q Consensus 417 --~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (675)
++++|...++++++..+ .+...+ ......+...+..++|+..++.+++.+ +-+...|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 35666666666665432 233333 333455555666666666666666554 3355666666666666666666655
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044815 494 FFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGI 573 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 573 (675)
.+....+.. |. ...+...+...+..+++...+....... .++...+..++..+...|++++|...+.+..+ .
T Consensus 200 ~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 271 (334)
T d1dcea1 200 QGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP--E 271 (334)
T ss_dssp CCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--T
T ss_pred HHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--h
Confidence 554433321 11 1122233444555556666666555432 22333444555555666666666666666655 2
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CC-ChhhHHHHHHHH
Q 044815 574 SPC-EVTRVTLAYEYCKQGDSATAMIILESLDK-KL-WIRTVNTLIRKL 619 (675)
Q Consensus 574 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 619 (675)
.|+ ...+..++.+|...|+.++|.+.++++.. .| ....|+.+...+
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 232 24445566666666666666666666544 22 233445444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.5e-09 Score=101.43 Aligned_cols=216 Identities=8% Similarity=-0.039 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNP---DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVK 528 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 528 (675)
+.+.++.-+++........ ...+|..+..+|.+.|++++|...|++.++..+ -+..+|..+..+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhh
Confidence 3456666667776542211 234677888999999999999999999998754 467899999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 529 YFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 529 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
.|+++.+. .|+ ..++..+..++...|++++|...|++.++. .|+ ......+...+.+.+..+.+..+.......
T Consensus 93 ~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 93 AFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 99999985 354 668888999999999999999999999984 443 444455566666777666666665555543
Q ss_pred CChhhHHHHHHHHHcc----CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 607 LWIRTVNTLIRKLCSE----KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 607 ~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+....-..++..+... +..+.+...+.......+. ...+|..++..+...|++++|.+.++++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 169 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3221112233333222 2233444333333333333 3457888999999999999999999999864
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=2.7e-08 Score=95.28 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 383 FERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCR 462 (675)
Q Consensus 383 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 462 (675)
.++|..+|++..+...+.+...+...+..+.+.|+++.|..+|+++++.........|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555443333344444455555555555555555555555432222233444555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 044815 463 MVKAGLNPDIHAYTTLIAA-FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG-CAP 540 (675)
Q Consensus 463 m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p 540 (675)
+.+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..... ..|
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 54432 1122222222221 122344445555555444431 1233444444444444455555555554444321 112
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 541 D--NITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 541 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
+ ...|...+.--...|+.+.+..+++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 22344444433444444444444444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=4.3e-08 Score=87.17 Aligned_cols=99 Identities=15% Similarity=0.029 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHH
Q 044815 540 PDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLI 616 (675)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 616 (675)
|+...+...+..|.+.|++++|+..|+++++ +.|+ ...+..++.+|.+.|++++|+..|+++.+ +.+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 6666667777778888888888888888777 3343 45566677778888888888887777655 33566777777
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCC
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.+|.+.|++++|+..|+++++..|
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc
Confidence 778888888888888877776554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.76 E-value=1.9e-05 Score=72.83 Aligned_cols=226 Identities=12% Similarity=0.033 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044815 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYT 476 (675)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 476 (675)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34455666666667777777777777776654 34445555555554 456667776666666554 333333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044815 477 TLIAAFCR----QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGAL 548 (675)
Q Consensus 477 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 548 (675)
.+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 34333332 3456666666666666542 2222222222222 33445555555555442 344555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHH
Q 044815 549 ISGLCK----QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLC 620 (675)
Q Consensus 549 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 620 (675)
...+.. ..+...+...++...+.| +......++..|.. ..+.++|..+|++.....++..+..|+..|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 225 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHH
Confidence 555543 334555556666655543 34445555555544 3456666666666555555555555555554
Q ss_pred c----cCCHHHHHHHHHHHhcCCCC
Q 044815 621 S----EKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 621 ~----~g~~~~A~~~~~~~~~~~~~ 641 (675)
+ ..+.++|.++|+++.+.|..
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCccCHHHHHHHHHHHHHCcCH
Confidence 3 22556666666666555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.74 E-value=1.7e-05 Score=73.17 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 044815 369 TYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCK----KGRVQEAYELLKKAFQ 430 (675)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 430 (675)
.+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...++....
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 33444444444455555555555544443 33334344444443 3344444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=1.9e-07 Score=74.25 Aligned_cols=103 Identities=19% Similarity=0.139 Sum_probs=81.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
-...+.+.|++++|+.+|+++++ ..|+ ...+..++.+|.+.|++++|+..+++..+ +.+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 45567788888888888888887 3443 45677788888888888888888888655 4567788889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
+++|+..|+++++..|. +...+..+..+
T Consensus 87 ~~~A~~~~~~a~~~~p~-~~~~~~~l~~l 114 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEAN-NPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999999999999888 77777776654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.2e-07 Score=81.40 Aligned_cols=117 Identities=7% Similarity=-0.035 Sum_probs=63.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 552 LCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
+...|++++|++.|+++ ..|+..++..++.+|...|++++|++.|++..+ +.....|..++.++.+.|++++|+
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 34455555555555432 123344445555555555555555555555433 224445555555555555666665
Q ss_pred HHHHHHhcCCCC--------------C-CHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 630 LFFHKLLGKDQN--------------V-DRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 630 ~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..|++++...+. + ...++..++.++.+.|++++|.+.++++++
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555443221 0 124566777777788888888887777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.71 E-value=6e-08 Score=76.50 Aligned_cols=91 Identities=13% Similarity=0.026 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYES 657 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 657 (675)
...++..+.+.|++++|+..|+++.. +.+...|..++.++.+.|++++|+..|+++++.+|. +...|..++.+|...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHC
Confidence 34567788889999999999988655 346788999999999999999999999999999999 999999999999999
Q ss_pred CchhHHHHHHHHHH
Q 044815 658 NKYALFSDLSQRIA 671 (675)
Q Consensus 658 g~~~~A~~~~~~~~ 671 (675)
|++++|.+.+++++
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=8.4e-08 Score=76.39 Aligned_cols=92 Identities=8% Similarity=-0.172 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
..-+..+.+.|++++|+..|+++.+ +.+...|..++.+|.+.|++++|+..++++++.+|. +...|..++.++...|
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 4467889999999999999999765 457888999999999999999999999999999998 9999999999999999
Q ss_pred chhHHHHHHHHHHhc
Q 044815 659 KYALFSDLSQRIAEG 673 (675)
Q Consensus 659 ~~~~A~~~~~~~~~~ 673 (675)
++++|...++++++.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.5e-07 Score=81.02 Aligned_cols=120 Identities=9% Similarity=-0.035 Sum_probs=59.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 595 (675)
+...|++++|++.|+++ .+|+..+|..+..++...|++++|++.|++.++ +.|+ ...+..++.+|.+.|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHH
Confidence 34445555555554432 123444444455555555555555555555554 2232 2344445555555555555
Q ss_pred HHHHHHHHhhC--C----------------ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 596 AMIILESLDKK--L----------------WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 596 A~~~~~~~~~~--~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
|++.|++.... . ...++..++.++.+.|++++|.+.++++++..+.+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 55555443210 0 01234455666666777777777777766666654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=2.4e-07 Score=87.56 Aligned_cols=190 Identities=17% Similarity=-0.009 Sum_probs=94.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAG----LF-PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCA-PD----NITYGAL 548 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l 548 (675)
...|...|++++|.+.|.++.+.. -. ....+|..+..+|.+.|++++|+..+++..+.... .+ ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 445556666666666666555421 00 11235566666666666666666666654431100 01 2234444
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--C-------hhhHH
Q 044815 549 ISGLCK-QSKLDEACQFYESMIGK----GISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKKL--W-------IRTVN 613 (675)
Q Consensus 549 ~~~~~~-~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-------~~~~~ 613 (675)
...|.. .|++++|++.++++.+. +..+. ..++..++..|.+.|++++|++.++++.... . ...+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 545533 46677777666666531 11111 1334556666667777777777766654421 1 01123
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCC-C---HHHHHHHHHHHHh--cCchhHHHHHHH
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNV-D---RVSLAALKNACYE--SNKYALFSDLSQ 668 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~--~g~~~~A~~~~~ 668 (675)
..+..+...|+++.|...++++.+.+|.. + ......++.++.. .+++++|...++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444555667777777777766665431 1 1233444544443 234555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=3.3e-07 Score=77.58 Aligned_cols=117 Identities=10% Similarity=0.076 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccC
Q 044815 547 ALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEK 623 (675)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 623 (675)
.....|.+.|++++|+..|+++++ +.|+ ...+..++.+|...|++++|+..|+++.+ +.+..+|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345567788888888888888887 3454 45667778888888888888888887654 345677888888888888
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--HhcCchhHHHHH
Q 044815 624 RVGMAALFFHKLLGKDQNVDRVSLAALKNAC--YESNKYALFSDL 666 (675)
Q Consensus 624 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~ 666 (675)
++++|+..+++++..+|. +...+..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888888888887 777766665543 334445555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.2e-07 Score=77.67 Aligned_cols=92 Identities=11% Similarity=-0.060 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYES 657 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 657 (675)
+...+..|.+.|++++|+..|+++.+ +.+...|..++.+|...|++++|+..|+++++.+|. +...|..++.++...
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 34457789999999999999999766 457888999999999999999999999999999999 999999999999999
Q ss_pred CchhHHHHHHHHHHh
Q 044815 658 NKYALFSDLSQRIAE 672 (675)
Q Consensus 658 g~~~~A~~~~~~~~~ 672 (675)
|++++|.+.++++++
T Consensus 92 g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 92 GKFRAALRDYETVVK 106 (159)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=8.3e-08 Score=85.20 Aligned_cols=98 Identities=9% Similarity=-0.011 Sum_probs=87.3
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTL 583 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 583 (675)
|+...+...+..|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++++ +.|+ ...+..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 778888889999999999999999999998853 34578899999999999999999999999998 6675 5678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 044815 584 AYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.+|.+.|++++|+..|+++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=1.4e-06 Score=82.14 Aligned_cols=213 Identities=11% Similarity=-0.029 Sum_probs=106.8
Q ss_pred ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----C
Q 044815 148 NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNN----GLPL-ITSTLNRVVGIACELGLVEYAEEVFDEMCAR----G 218 (675)
Q Consensus 148 ~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 218 (675)
+|++|.++|......|...|++++|...|.++.+. +-++ -..+|..+..+|.+.|++++|.+.+++..+. |
T Consensus 32 ~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~ 111 (290)
T d1qqea_ 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence 46667777777777777777777777777765432 1111 2356777788888888988888888776542 1
Q ss_pred CC-CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCC-C
Q 044815 219 VC-ADASSYKLMVVAYCR-MGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKP-N 295 (675)
Q Consensus 219 ~~-~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 295 (675)
.. ....++..+...|.. .|++++|.+.+++..+.- ...+..+ -
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~----------------------------------~~~~~~~~~ 157 (290)
T d1qqea_ 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY----------------------------------AQDQSVALS 157 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----------------------------------HHTTCHHHH
T ss_pred cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH----------------------------------HhcCchhhh
Confidence 00 012233333333422 355555555555443210 0001000 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC---
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKP----NV-HTYTAMISGYCKEEKMNRAEMLLERMKEQGLL-PN--- 366 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~--- 366 (675)
..++..+...+.+.|++++|.+.|+++.......+ .. ..+...+..+...|+++.|...+++..+.... ++
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre 237 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH
Confidence 23455556666666666666666666544321111 11 11223334444556666666666665543211 11
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHh
Q 044815 367 TNTYTSLIYGHCK--VGNFERAYDLMDLMG 394 (675)
Q Consensus 367 ~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 394 (675)
......++.++.. .+.+++|+..|+.+.
T Consensus 238 ~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1233444444433 233566666665444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.6e-06 Score=74.08 Aligned_cols=92 Identities=12% Similarity=-0.011 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
++..++.+|.+.|++++|+..+++... +.++.+|..++.+|...|++++|+..|+++++.+|. |......+..+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 556688889999999999999998765 447888999999999999999999999999999998 88888888887766
Q ss_pred cCchhHHH-HHHHHHH
Q 044815 657 SNKYALFS-DLSQRIA 671 (675)
Q Consensus 657 ~g~~~~A~-~~~~~~~ 671 (675)
.+...+.. +.++++.
T Consensus 143 ~~~~~~~e~~~~~~~f 158 (170)
T d1p5qa1 143 IRRQLAREKKLYANMF 158 (170)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 66555432 2344443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4.6e-07 Score=72.14 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhC-CC---hhhHHHHHH
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDS---ATAMIILESLDKK-LW---IRTVNTLIR 617 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~-~~---~~~~~~l~~ 617 (675)
..+++.+...+++++|.+.|++.+. +.| +..++..++.++.+.++. ++|+.+++++... +. ..+|..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4577888899999999999999998 444 457888899999876654 5699999997653 22 336788999
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
+|.+.|++++|+++|+++++.+|. +.......
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~-~~~A~~l~ 112 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQ-NNQAKELE 112 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 999999999999999999999988 66555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2e-06 Score=68.27 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 044815 511 TSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSK---LDEACQFYESMIGKGISPCE-VTRVTLAYE 586 (675)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 586 (675)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+++++++.+..|+. .+++.++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456677777778888888888877743 3356677777777766443 44578888887764433332 356677888
Q ss_pred HHHcCCHHHHHHHHHHHhh
Q 044815 587 YCKQGDSATAMIILESLDK 605 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~ 605 (675)
|.+.|++++|++.|+++.+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 8888888888888887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.29 E-value=1.1e-05 Score=68.58 Aligned_cols=93 Identities=10% Similarity=-0.053 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
.+..++.+|.+.|++++|+..++++.. +.+..+|..++.++...|++++|+..|+++++.+|. +......+..+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 455678889999999999999999765 457888999999999999999999999999999998 88888888888776
Q ss_pred cCchh-HHHHHHHHHHh
Q 044815 657 SNKYA-LFSDLSQRIAE 672 (675)
Q Consensus 657 ~g~~~-~A~~~~~~~~~ 672 (675)
.+... ...+.+.++.+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 66554 34555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.28 E-value=9.9e-06 Score=67.49 Aligned_cols=76 Identities=16% Similarity=-0.032 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
++..++.+|.+.|++++|++.++++.. +.+..+|..++.++...|++++|+..|+++++.+|. |..+...+..+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 146 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 556688888899999999998888654 446788889999999999999999999999999988 7777766655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=4.9e-06 Score=70.85 Aligned_cols=110 Identities=16% Similarity=0.064 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccC
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEK 623 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 623 (675)
.+...+..+.+.|++++|+..|++.++. .|... +..+.-......+ ...+|+.++.+|.+.|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~----~~~~~~nla~~y~k~~ 76 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQAL----RLASHLNLAMCHLKLQ 76 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchh----HHHHHHHHHHHHHhhh
Confidence 4455566777778888888888777752 11000 0000000011111 1235777899999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 624 RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 624 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++++|+..++++++.+|. +..++..++.+|...|++++|...++++++
T Consensus 77 ~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 77 AFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999998 999999999999999999999999999876
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=7.4e-06 Score=69.73 Aligned_cols=85 Identities=11% Similarity=-0.124 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..+..++.+|.+.|++++|+..++++.+ +.+..+|..++.++...|++++|+..|+++++.+|+ |......+..+..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~ 156 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4556688889999999999999998766 456778999999999999999999999999999998 8888888877766
Q ss_pred hcCchhHH
Q 044815 656 ESNKYALF 663 (675)
Q Consensus 656 ~~g~~~~A 663 (675)
+.....++
T Consensus 157 ~l~~~~~~ 164 (169)
T d1ihga1 157 KIKAQKDK 164 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.7e-06 Score=68.53 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCCh-------hhHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWI-------RTVN 613 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-------~~~~ 613 (675)
.+..+...+...|++++|+..|++.++ +.|+ ...+..++.+|.+.|++++|+..++++.. +.+. .+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455677788888999999999999888 3444 56667788889999999999988888654 2122 3456
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLA 648 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 648 (675)
.++..+...+++++|+.+|++.+. ..++.....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 116 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLK 116 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHHH
Confidence 677777778888888888887653 445554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.1e-07 Score=95.17 Aligned_cols=225 Identities=9% Similarity=-0.014 Sum_probs=130.4
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 420 EAYELLKKAFQRELQAD-KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDI-HAYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 420 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
+|.+.|+++.+. .|+ ...+..+..++...+++++| +++++.. .|+. ..++.... +- ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~-Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQD-LW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHH-HH-HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHH-HH-HHHHHHHHHHHHH
Confidence 688889888764 343 34566677788888888776 6666654 2221 11111111 11 1124556777777
Q ss_pred HHHCCCCCCHhHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 498 AITAGLFPTKETYTSMICGY--LRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGIS 574 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 574 (675)
..+....++..-.......+ ...+.++.|+..++...+ +.| +...+..+...+.+.|+.++|...++..+. +.
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~ 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YI 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHH--HH
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CC
Confidence 66654334433332222222 234555666655554443 334 455677788888899999999998888776 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 575 PCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 575 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
| ...+..++..+...|++++|...|++... +.+...|+.++..+...|+..+|+..|.+++..++. ...++.+|..
T Consensus 151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~ 228 (497)
T d1ya0a1 151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQK 228 (497)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHH
Confidence 3 35677899999999999999999999765 456778999999999999999999999999998875 8889999988
Q ss_pred HHHhcCc
Q 044815 653 ACYESNK 659 (675)
Q Consensus 653 ~~~~~g~ 659 (675)
.+.+..+
T Consensus 229 ~~~~~~~ 235 (497)
T d1ya0a1 229 ALSKALE 235 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhhh
Confidence 8766544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.17 E-value=1.1e-05 Score=67.22 Aligned_cols=111 Identities=15% Similarity=-0.013 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccC
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEK 623 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 623 (675)
.+..-+..+.+.|++++|+..|+++++. .+.... ............ ....+|..++.+|.+.|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~----~~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN----IEISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhh----HHHHHHhhHHHHHHHhc
Confidence 4555666778888888888888888763 111000 000000000000 11346778999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 624 RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 624 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++++|+..++++++.+|. +..+|..++.++...|++++|...++++++
T Consensus 82 ~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 82 DYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998 999999999999999999999999999986
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=7.2e-06 Score=64.11 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
.+.+.|++++|+..|++.++ ..|+ ...+..++.+|.+.|++++|+..+++... +.+...|..++..|...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence 34444444444444444444 2222 23344444444444444444444444332 2234444555555555555555
Q ss_pred HHHHHHHH
Q 044815 628 AALFFHKL 635 (675)
Q Consensus 628 A~~~~~~~ 635 (675)
|++.+++.
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=1.1e-05 Score=68.61 Aligned_cols=110 Identities=10% Similarity=-0.030 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCC
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (675)
+......+...|++++|+..|+++++ +.+.. .......+... ..+.....|..++.++.+.|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~--~~~~~----------~~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~~~ 92 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGS----------RAAAEDADGAK-----LQPVALSCVLNIGACKLKMSD 92 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHH----------HHHSCHHHHGG-----GHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hhhhh----------hhhhhhHHHHH-----hChhhHHHHHHHHHHHHhhcc
Confidence 44455566777777777777777654 11100 00000000000 011234567888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+++|+..++++++.+|. +..+|..++.++...|++++|.+.++++++
T Consensus 93 ~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 93 WQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999998 999999999999999999999999999986
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.2e-06 Score=87.36 Aligned_cols=266 Identities=11% Similarity=0.043 Sum_probs=149.3
Q ss_pred HHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 385 RAYDLMDLMGKEGCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADK-ITYTILLSEHLKQAETKQALGLFCR 462 (675)
Q Consensus 385 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~ 462 (675)
+|.+.|++..+. .|+ ...+..+..++...|++++| +++++..+ |+. ..++. ........+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHHH
Confidence 688889888765 333 45667788888888888877 56665432 221 11111 111111224556777777
Q ss_pred HHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044815 463 MVKAGLNPDIHAYTTLIAA--FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP 540 (675)
Q Consensus 463 m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 540 (675)
..+....++..-....... ....+.++.|...+....+.. .++...+..+...+.+.|+.++|...+++..... |
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H
Confidence 7665433443222222212 223455555555555444432 2456678888889999999999999888776521 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIR 617 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 617 (675)
..++..++..+...|++++|...|+++++ +.|+. ..++.|+..|...|+..+|...|.+... +|...++..|..
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35777889999999999999999999999 56765 7889999999999999999999999765 567788888887
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCC-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQN-VD-RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+.+..+..++. +.... ++ ...+..+...++....++...++.+++++
T Consensus 229 ~~~~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (497)
T d1ya0a1 229 ALSKALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE 278 (497)
T ss_dssp HHHHHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred HHHHhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Confidence 765533221110 01110 01 22445566667788888888887777654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=0.001 Score=62.21 Aligned_cols=310 Identities=13% Similarity=0.073 Sum_probs=159.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 293 KPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTS 372 (675)
Q Consensus 293 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 372 (675)
.||..-...+++.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+. -+..+|..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~ 74 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 74 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHH
Confidence 3566666667777778888888888876541 3667777778888888887777644 25667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044815 373 LIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452 (675)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 452 (675)
+...+.+.....-| .+...+...+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 75 ~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~- 147 (336)
T d1b89a_ 75 VCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK- 147 (336)
T ss_dssp HHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-
Confidence 77777766655433 2233333445556667778888888888888888876543 2456666777777777654
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
.++..+.++.. ....+. ..++..|.+.+-++++ +-.|.+.|.+++|..++-+
T Consensus 148 ~~kl~e~l~~~---s~~y~~---~k~~~~c~~~~l~~el----------------------v~Ly~~~~~~~~A~~~~i~ 199 (336)
T d1b89a_ 148 PQKMREHLELF---WSRVNI---PKVLRAAEQAHLWAEL----------------------VFLYDKYEEYDNAIITMMN 199 (336)
T ss_dssp HHHHHHHHHHH---STTSCH---HHHHHHHHTTTCHHHH----------------------HHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHhc---cccCCH---HHHHHHHHHcCChHHH----------------------HHHHHhcCCHHHHHHHHHH
Confidence 23333333222 111111 2234444444444444 4444455555555443221
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHH
Q 044815 533 MNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEV-----------TRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
- .++..-...++..+.+.++.+...++....++ ..|+.. ....++....+.+++.-...+++
T Consensus 200 ~-----~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~--~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le 272 (336)
T d1b89a_ 200 H-----PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLR 272 (336)
T ss_dssp S-----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHH
T ss_pred c-----chhhhhHHHHHHHHHccCChHHHHHHHHHHHH--cCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHH
Confidence 0 11111122233333444444433333333332 112110 01224445566777777777777
Q ss_pred HHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 602 SLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
...........+++...|...++++.-.... +..-+-|.... +. .+...+.-+.+++.-
T Consensus 273 ~v~~~n~~~vn~al~~lyie~~d~~~l~~~i----~~~~~fd~~~l---~~-~le~h~~~~~r~~~~ 331 (336)
T d1b89a_ 273 SVQNHNNKSVNESLNNLFITEEDYQALRTSI----DAYDNFDNISL---AQ-RLEKHELIEFRRIAA 331 (336)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTCHHHHHHHH----HHCCCSCHHHH---HH-HHTTCSSHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHHhCcchhHHHHHHH----HHhcccCHHHH---HH-HHhhCcchHHHHHHH
Confidence 7766666777888999999999876544333 33333344332 22 334445555555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.97 E-value=2.8e-05 Score=65.91 Aligned_cols=62 Identities=16% Similarity=0.057 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..|..++.+|.+.|++++|+..++++++.+|. +...|..++.++...|++++|.+.++++++
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677888999999999999999999999998 999999999999999999999999999875
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00012 Score=58.46 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHH
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGC-APD-----NITYGALISG 551 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-----~~~~~~l~~~ 551 (675)
+...+.+.|++++|...|.+.++.+. .+...|..+..+|.+.|++++|+..++++++... .+. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444322 2344444444444444444444444444433110 000 1233444444
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 044815 552 LCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~ 570 (675)
+...+++++|+..|++.+.
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 4444555555555544443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.012 Score=54.61 Aligned_cols=136 Identities=12% Similarity=0.125 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 186 LITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 186 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
|+..-...++..|.+.|.++.|..+|..+.. |.-++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 4445555666777788888888888876642 4556677777888888777766541 556777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 266 TAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKE 345 (675)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 345 (675)
..+... ....-+ .+...+...+......++..|-..|.+++...+++..+... ..+...++.++..|++.
T Consensus 77 ~~l~~~---~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDG---KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHT---TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT
T ss_pred HHHHhC---cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHh
Confidence 666654 233221 22222233355555667778888888888888877665432 45666777777777765
Q ss_pred C
Q 044815 346 E 346 (675)
Q Consensus 346 ~ 346 (675)
+
T Consensus 147 ~ 147 (336)
T d1b89a_ 147 K 147 (336)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.82 E-value=1.9e-05 Score=64.87 Aligned_cols=124 Identities=12% Similarity=0.057 Sum_probs=70.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ----------SKLDEACQFYESMIGKGISPC-EVTRVTLAY 585 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 585 (675)
|-+.+.+++|+..|++..+.. +.+...+..+..+|... +.+++|+..|+++++ +.|+ ..+++.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 345556677777777776642 22355666666665533 334556666666665 3343 244455555
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 044815 586 EYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
+|...|++. ++.. ...+++++|.+.|+++++.+|. +...+..|.... +|.+
T Consensus 84 ~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~~~-------ka~~ 134 (145)
T d1zu2a1 84 AYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEMTA-------KAPQ 134 (145)
T ss_dssp HHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH-------THHH
T ss_pred HHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCC-HHHHHHHHHHHH-------HHHH
Confidence 554443221 0000 0112468899999999999998 777777666553 5555
Q ss_pred HHHHHHh
Q 044815 666 LSQRIAE 672 (675)
Q Consensus 666 ~~~~~~~ 672 (675)
.+.++.+
T Consensus 135 ~~~e~~k 141 (145)
T d1zu2a1 135 LHAEAYK 141 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=0.00011 Score=62.39 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-CCH------------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGK--GIS-PCE------------------VTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
...........|++++|.+.|.+.++. |.. ++. ..+..++..+.+.|++++|+..++++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~a 93 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 93 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 334455678899999999999999873 211 110 11223344444445555555544444
Q ss_pred hh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 604 DK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 604 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
.. +.+...|..++.+|.+.|+.++|++.|+++
T Consensus 94 l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 94 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 32 223444444555555555555555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=7.5e-05 Score=55.93 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---------CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDKK---------LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
...+..++..+.+.|++++|...|++..+. ....+++.++.++.+.|++++|+..++++++.+|+ +..++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHH
Confidence 445667788888888888888888776431 11456888999999999999999999999999998 88887
Q ss_pred HHHHH
Q 044815 648 AALKN 652 (675)
Q Consensus 648 ~~l~~ 652 (675)
..+..
T Consensus 84 ~Nl~~ 88 (95)
T d1tjca_ 84 GNLKY 88 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.76 E-value=3.4e-05 Score=64.40 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=50.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--------C-----
Q 044815 552 LCKQSKLDEACQFYESMIGKG-ISPC----------EVTRVTLAYEYCKQGDSATAMIILESLDKK--------L----- 607 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g-~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~----- 607 (675)
+...|++++|+..|++.++.. -.|+ ...+..++.+|.+.|++++|...+++...- +
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 444556666666666655410 0010 134455666666666666666666554320 0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 608 WIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
....++.++.+|.+.|++++|+..|+++++.
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1224566788888888888888888887765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00046 Score=58.49 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCC-CCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQI--GCA-PDN------------------ITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.........|++++|...|.+.... |.. ++. ..+..++.++.+.|++++|+..++++++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 95 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 95 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3445677889999999999988874 211 010 2456677788889999999999999988
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 571 KGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 571 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.| +...+..++.+|.+.|+.++|++.|+++..
T Consensus 96 --~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 96 --EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp --HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445 456778889999999999999988887643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.69 E-value=3e-05 Score=63.65 Aligned_cols=96 Identities=11% Similarity=0.024 Sum_probs=65.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHH
Q 044815 552 LCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
|-+.+.+++|+..|+..++ +.|+. ..+..++.+|...+++..+.+ ..+.+++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHH
Confidence 3445556666666666666 33433 344555555554444333322 2345678999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCc-----------hhHHHHHHHHHHh
Q 044815 631 FFHKLLGKDQNVDRVSLAALKNACYESNK-----------YALFSDLSQRIAE 672 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~ 672 (675)
.|+++++.+|+ +..+|..++.+|...|+ +++|.+.++++++
T Consensus 63 ~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 63 KFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 99999999998 99999999999987764 6888888888775
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.61 E-value=5.3e-05 Score=69.05 Aligned_cols=122 Identities=10% Similarity=-0.027 Sum_probs=70.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 595 (675)
..+.|++++|+..+++.++.. +.|...+..++..|+..|++++|...++...+ +.|+. ..+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHH
Confidence 346678888888888877742 33466777788888888888888888888877 45544 333334444433333333
Q ss_pred HHHHHHHHhhCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 596 AMIILESLDKKLWI---RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 596 A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+..-.........+ ..+...+..+...|+.++|.+.++++.+..|.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 22211111111111 22233344566677777777777777666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.53 E-value=0.0006 Score=56.44 Aligned_cols=94 Identities=15% Similarity=-0.063 Sum_probs=74.2
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHhh--C--CC----------hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC--
Q 044815 579 TRVTL--AYEYCKQGDSATAMIILESLDK--K--LW----------IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ-- 640 (675)
Q Consensus 579 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~--~--~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 640 (675)
++..+ +..+.+.|++++|++.|++... + ++ ...|+.++.+|.+.|++++|...++++++..+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 6677889999999999999754 1 11 34688899999999999999999999886421
Q ss_pred ---CCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 641 ---NVD-----RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 641 ---~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.++ ...+..++.+|...|++++|.+.++++++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23578899999999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.32 E-value=0.00023 Score=64.60 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=57.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHH
Q 044815 448 LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT-KETYTSMICGYLRDGNISSA 526 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 526 (675)
.+.|++++|+..+++.++.. +.+...+..+...++..|++++|.+.|+...+.. |+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence 34566666666666666553 4455666666666666666666666666666542 22 22333333333222222222
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 527 VKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
..-.......+ .|+ ...+......+...|+.++|.+.++++.+
T Consensus 84 ~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 11111111111 121 22333334445566666666666666655
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00027 Score=52.75 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=53.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC-----CC-HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN-----VD-RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+..++..+.+.|++++|+..|+++++..+. ++ ..++..++.++.+.|++++|.+.++++++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 4557889999999999999999999875332 22 56899999999999999999999999986
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.10 E-value=0.0042 Score=49.38 Aligned_cols=111 Identities=14% Similarity=-0.007 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 044815 522 NISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK----QGDSATAM 597 (675)
Q Consensus 522 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 597 (675)
++++|+++|++..+.| .+. ....+. .....+.++|...+++..+.| +......|+..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g-~~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMF--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chh--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 6778888888887766 222 222232 234457778888888877765 34555666666654 34567777
Q ss_pred HHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCC
Q 044815 598 IILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 640 (675)
++|++..+..++.....|...|.. ..+.++|.++|+++.+.|.
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 777777776666666667666654 3467777777777777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.02 E-value=0.0069 Score=48.05 Aligned_cols=78 Identities=13% Similarity=-0.004 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCchhH
Q 044815 591 GDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE----SNKYAL 662 (675)
Q Consensus 591 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 662 (675)
.+.++|.+++++..+..++.....|...|.. ..+.++|.++|+++.+.+ ++.....|+..|.. ..+.++
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHH
Confidence 3444455555544444444444444444332 224445555555544443 23334444444433 234445
Q ss_pred HHHHHHHHH
Q 044815 663 FSDLSQRIA 671 (675)
Q Consensus 663 A~~~~~~~~ 671 (675)
|.++++++.
T Consensus 114 A~~~~~~Aa 122 (133)
T d1klxa_ 114 AVKTFEKAC 122 (133)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.81 E-value=0.24 Score=37.08 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=37.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+.-++.+.+.|+-|.-.++++.+++ +-+|++..+..++.+|.+.|...++.+++.++.+
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344555666666666666666555 3445667777777777777777777777776655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.93 Score=43.75 Aligned_cols=328 Identities=13% Similarity=0.079 Sum_probs=178.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+...-..+..+....|+.++|.+.+..+-..+...|+ ....++..+.+.|.. +...+-.-+
T Consensus 101 ~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~c~~l~~~~~~~~~l-t~~~~~~R~ 161 (450)
T d1qsaa1 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------ACDKLFSVWRASGKQ-DPLAYLERI 161 (450)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------HHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------HHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 4444445666666777777776666555443333332 223344444444333 333333344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCC
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK--QAE 452 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~ 452 (675)
......|++..|..+...+... ........+........+ ...... ...+......+..++.+ ..+
T Consensus 162 ~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~---~~~~~~-----~~~~~~~~~~~~~~l~rla~~d 229 (450)
T d1qsaa1 162 RLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTV---LTFART-----TGATDFTRQMAAVAFASVARQD 229 (450)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGH---HHHHHH-----SCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhH---HHHHhc-----CCCChhhhHHHHHHHHHHhccC
Confidence 4555667777777766543221 223334444433222222 221111 12333333333333333 357
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAF----CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVK 528 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 528 (675)
.+.+..++....... ..+......+-... ...+..+.+...+......+ .+.......+......+++..+..
T Consensus 230 ~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~ 306 (450)
T d1qsaa1 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (450)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHH
Confidence 788888887776653 22333232222222 33466677777777766654 345555555666677788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhCC
Q 044815 529 YFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS-ATAMIILESLDKKL 607 (675)
Q Consensus 529 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 607 (675)
.++.|.... .....-.--+..++...|+.++|...|..+... + +|+..+.+ .+.|.. .-.. ..+....
T Consensus 307 ~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~~~~---~~~~~~~ 375 (450)
T d1qsaa1 307 WLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYELKI---DKAPQNV 375 (450)
T ss_dssp HHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCCCCC---CCCCSCC
T ss_pred HHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCCCCc---CCCCccH
Confidence 888775421 112333344667788888988888888888652 3 24433221 222221 0000 0000000
Q ss_pred Chh----hHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 608 WIR----TVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 608 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
... .--.-+..+...|...+|...|..+.+.. +......++....+.|.++.|+....++
T Consensus 376 ~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000 01234566889999999999998887542 5667788899999999999999887764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.011 Score=45.20 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhC-C-C-hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 573 ISPCEVTRVTLAYEYCKQGD---SATAMIILESLDKK-L-W-IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 573 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
-.|...+-...++++.+..+ .++++.+++.+.+. | + ...+..|+-+|.+.|++++|+++++++++.+|. |...
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~-n~qA 109 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQV 109 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC-cHHH
Confidence 34666788888999998765 46788888887653 2 2 346678888899999999999999999999998 6543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.15 Score=38.62 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 540 PDNITYGALISGLCKQS---KLDEACQFYESMIGKGISP-CE-VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 540 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
|...+--....++.+.. +.++++.+++++.+.+ | +. ..++.|+.+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444444445555443 3456666666666532 3 22 3445666667777777777777766544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.82 E-value=0.53 Score=35.16 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
|.+++..+++.+.... .+..-||.+|--....-+.+-..++++.+-+-..+. ..+++......
T Consensus 16 G~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~vv~C 78 (161)
T d1wy6a1 16 GYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVVEC 78 (161)
T ss_dssp TCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHHHH
T ss_pred hhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHHHHH
Confidence 6677777777776654 245556666655555566666666655543222111 12222222222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044815 355 LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL 433 (675)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 433 (675)
+-.+- .+...+...++...+.|+-+.-.++++.+.+.+ .+++...-.+..+|-+.|...++-+++.++-++|.
T Consensus 79 ~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 79 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 22211 123334445566667777777777777766644 66667777777777777777777777777766664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=3.7 Score=39.23 Aligned_cols=423 Identities=9% Similarity=-0.053 Sum_probs=237.2
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 044815 150 ERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIAC--ELGLVEYAEEVFDEMCARGVCADASSYK 227 (675)
Q Consensus 150 ~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 227 (675)
+.-+..|.... ...+.|+.+++..+...+.+ +|.- .|-..-..-. .....+++..++++-... +.....-.
T Consensus 4 ~~~r~~y~~a~-~a~~~~~~~~~~~~~~~L~d--ypL~--pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~ 76 (450)
T d1qsaa1 4 DEQRSRYAQIK-QAWDNRQMDVVEQMMPGLKD--YPLY--PYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQS 76 (450)
T ss_dssp HHHHHHHHHHH-HHHHTTCHHHHHHHSGGGTT--STTH--HHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHCCCHHHHHHHHhhhcC--CCCH--HHHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHH
Confidence 44455665444 46778999988888877743 3332 2332222222 233455555554443211 11112223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 044815 228 LMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLC 307 (675)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (675)
..+..+.+.++++.....+. ....+...--.+..+.... |+.++|...+..+-..|.. ....+..+...+.
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~---g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~ 147 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNT---GQSEEAWQGAKELWLTGKS-QPNACDKLFSVWR 147 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHT---TCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 44567788888877554432 1222344333455555555 6788888777776555422 2333343443333
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 308 KKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAY 387 (675)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 387 (675)
+.|. .+...+-.-+......|++..|..+...+-. .........+........+..
T Consensus 148 ~~~~------------------lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~-- 203 (450)
T d1qsaa1 148 ASGK------------------QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLT-- 203 (450)
T ss_dssp HTTC------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHH--
T ss_pred hcCC------------------CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHH--
Confidence 3332 3333344445556677888888887664322 123334444444333222222
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHH
Q 044815 388 DLMDLMGKEGCTPNIYAYNAIIDGLCK--KGRVQEAYELLKKAFQRELQADKITYTI----LLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 388 ~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~A~~~~~ 461 (675)
..... ..+......+..++.+ ..+.+.|..++......... +..-+.. +...+...+..+.+...+.
T Consensus 204 ----~~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~ 276 (450)
T d1qsaa1 204 ----FARTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (450)
T ss_dssp ----HHHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred ----HHhcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 11111 2344444444444433 35788899998887765332 2222222 2233344567788888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 541 (675)
.....+ .+.......+......+++..+...+..|... ......-.-.+..++...|+.++|...|..... .++
T Consensus 277 ~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~ 350 (450)
T d1qsaa1 277 DAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG 350 (450)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS
T ss_pred hhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC
Confidence 776653 34555555666667789999999999887542 112334445677889999999999999999864 244
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCH-H---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGI--SPCE-V---TRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTL 615 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~-~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 615 (675)
-|..+.. .+.|..-. +-...+ .+.. . .-..-+..+...|+..+|...+..+....+......+
T Consensus 351 --fYG~LAa--~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~l 419 (450)
T d1qsaa1 351 --FYPMVAA--QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQL 419 (450)
T ss_dssp --HHHHHHH--HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred --hHHHHHH--HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHH
Confidence 3443332 23332100 000000 0111 0 1122356678899999999999888776677777888
Q ss_pred HHHHHccCCHHHHHHHHHHHh
Q 044815 616 IRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~ 636 (675)
+....+.|.++.|+....++.
T Consensus 420 a~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 420 ARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCCChhHHHHHHHHHH
Confidence 888899999999998877753
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.90 E-value=0.24 Score=35.11 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 624 RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 624 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
+.=++.+-++.+...+.-|++....+.+.+|.+.+++.-|.++++.+..+||
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~ 72 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 72 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4446677777888888888899999999999999999999999998888875
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.90 E-value=5.6 Score=27.93 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 526 AVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMI 569 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (675)
+.+-++.+....+.|++....+.+.+|.+.+++..|.++++-..
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
|