Citrus Sinensis ID: 044862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTGGNKPKCP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
datypktpvpapappkapvkpitpppvvkppttypppvkpptttppvvklptvapappvkpptvmptpplkppptypppvkpptttpppvsppktapapqvpspasspmpivrsnkdciplcaarckahsrpnifgracttccvrckcvppgtygnrekcgkcytggnkpkcp
Flexible Loop (DISEMBL)
datypktpvpapappkapvkpiTPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDCIPLCAARCkahsrpnifgracttCCVRCKcvppgtygnrekcgkcytggnkpkcp
Low Complexity Region (SEG)
DatypktpvpapappkapvkpitpppvvkppttypppvkpptttppvvklptvapappvkpptvmptpplkppptypppvkpptttpppvsppktapapqvpspasspmpIVRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTGGNKPKCP
Disordered region (IsUnstruct)
******************************************************************************************************************NKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYT********
Disordered Region (DISOPRED)
****PKT********************************PPT*TPPVVKLPTV***************************************************************DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTGG******
Disordered Region (DISEMBL)
DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPP***************************SPMPIVRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYT********
Disordered Region (DISPRO)
*****KTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTT************************IVRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTGGN***C*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTGGNKPKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9LFR3	275	Gibberellin-regulated pro	yes	no	0.352	0.221	0.646	6e-19
Q93X17	104	Snakin-2 OS=Solanum tuber	N/A	no	0.456	0.759	0.5	1e-11
P46689	98	Gibberellin-regulated pro	no	no	0.323	0.571	0.557	4e-10
F4IQJ4	94	Gibberellin-regulated pro	no	no	0.369	0.680	0.492	1e-08
P46687	99	Gibberellin-regulated pro	no	no	0.323	0.565	0.524	4e-07
Q8GWK5	119	Gibberellin-regulated pro	no	no	0.323	0.470	0.508	2e-06

>sp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 46/65 (70%), Gaps = 4/65 (6%)

Query: 113 RSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGN 168
           R+  DC+PLC  RC  HSR N+  RAC TCC RCKCVPPGTYGN+EKCG CY    T G 
Sbjct: 211 RTRIDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGG 270

Query: 169 KPKCP 173
           K KCP
Sbjct: 271 KSKCP 275

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93X17|SNAK2_SOLTU Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 94  KTAPAPQVPSPASSPMPIVRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGT 153
           ++    QV S A S         DC   CAARC+  SRP +  RAC TCC RC CVPPGT
Sbjct: 22  QSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGT 81

Query: 154 YGNREKCGKCY----TGGNKPKCP 173
            GN E C  CY    T GNK KCP
Sbjct: 82  SGNTETC-PCYASLTTHGNKRKCP 104

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.

Solanum tuberosum (taxid: 4113)

>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPKC 172
           DC   C ARC+   RP +  RAC TCC RC CVPPGTYGN +KC +CY    T G + KC
Sbjct: 39  DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKC 97

Query: 173 P 173
           P
Sbjct: 98  P 98

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQJ4|GASAB_ARATH Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 110 PIVRSNK----DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKC---GK 162
            +V SN     DC   C  RC   SRPN+  RAC TCC RC CV PGT GN +KC   G 
Sbjct: 24  DMVTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGS 83

Query: 163 CYTGGNKPKCP 173
             T G + KCP
Sbjct: 84  LTTHGGRRKCP 94

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPKC 172
           DC   C  RC   SRPN+  RAC +CC RC CVPPGT GN   C  CY    T G + KC
Sbjct: 40  DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKC 98

Query: 173 P 173
           P
Sbjct: 99  P 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWK5|GASA9_ARATH Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPKC 172
           +C   CA RC   SR  +  RAC +CC +C+CVPPGT GN   C  CY    T GNK KC
Sbjct: 60  NCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASC-PCYASIRTHGNKLKC 118

Query: 173 P 173
           P
Sbjct: 119 P 119

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
255552704	234	extensin, proline-rich protein, putative	0.838	0.619	0.562	6e-24
388519821	248	unknown [Medicago truncatula]	0.826	0.576	0.505	4e-23
388507786	249	unknown [Lotus japonicus]	0.369	0.257	0.735	7e-22
388501570	231	unknown [Lotus japonicus]	0.369	0.277	0.735	8e-22
296087713	298	unnamed protein product [Vitis vinifera]	0.352	0.204	0.769	3e-21
225452551	231	PREDICTED: uncharacterized protein LOC10	0.352	0.264	0.769	2e-20
351726602	191	uncharacterized protein LOC100527019 pre	0.352	0.319	0.723	3e-19
112350249	264	GASA-like protein [Gossypium hirsutum]	0.358	0.234	0.712	9e-19
351725761	182	uncharacterized protein LOC100527676 pre	0.352	0.335	0.707	1e-18
224060000	223	predicted protein [Populus trichocarpa]	0.358	0.278	0.696	6e-18

>gi|255552704|ref|XP_002517395.1| extensin, proline-rich protein, putative [Ricinus communis] gi|223543406|gb|EEF44937.1| extensin, proline-rich protein, putative [Ricinus communis]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 101/169 (59%), Gaps = 24/169 (14%)

Query: 26  PVVKPPTT-YPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPT--------- 75
           PVVKPPT+  PP VKPPT +PPV K PT    P +KPP         P            
Sbjct: 69  PVVKPPTSPAPPVVKPPTPSPPVYKPPTT---PVIKPPNAPSPVVKPPTVPAPPVVKPPT 125

Query: 76  YPPPV-KPPTTTPPPVSPPKTAPAPQV------PSPASSPMPIVRSNKDCIPLCAARCKA 128
           Y PPV KPPT  PP V PP T   P        P P+ +P+P VRS  DCIPLCA RCK 
Sbjct: 126 YSPPVAKPPTPAPPVVKPPSTPAPPMFKPPTPLPPPSGTPLPPVRSRADCIPLCAERCKL 185

Query: 129 HSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG----GNKPKCP 173
           HSR NI  RAC TCC RCKCVPPGTYGNREKCGKCYT      NKPKCP
Sbjct: 186 HSRKNICTRACITCCDRCKCVPPGTYGNREKCGKCYTDMTTRHNKPKCP 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519821|gb|AFK47972.1| unknown [Medicago truncatula]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 101/182 (55%), Gaps = 39/182 (21%)

Query: 25  PPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPV---------------KPPTVMPTPP 69
           PP+VK P    PPVKP   TPP+VK P   P+PP+                PP V PTPP
Sbjct: 73  PPLVKTPPYQSPPVKP---TPPIVKSP---PSPPLVKSPPYQSPPIVKAPSPPLVKPTPP 126

Query: 70  LKPPPTYPPPVK-PPTTTPPPVSPPKTAPAPQVPSPASSP-------------MPIVRSN 115
           +   P  PP VK PP  +PP V  P T P      P  SP              PIV+S 
Sbjct: 127 IVKSPPSPPLVKTPPYQSPPIVKAPPTPPPIVKTPPYQSPPIVKPPVAPSPPPTPIVKSW 186

Query: 116 KDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG----GNKPK 171
           KDCIPLC  RC+ HSR N   RAC TCC RCKCVPPGTYGNREKCGKCYT     GN+PK
Sbjct: 187 KDCIPLCGYRCQKHSRQNTCIRACMTCCDRCKCVPPGTYGNREKCGKCYTDMVTHGNRPK 246

Query: 172 CP 173
           CP
Sbjct: 247 CP 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507786|gb|AFK41959.1| unknown [Lotus japonicus]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 53/68 (77%), Gaps = 4/68 (5%)

Query: 110 PIVRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG--- 166
           PIV+S KDCIPLC  RC+ HSR N+  RAC TCC RCKCVPPGTYGNREKCGKCYT    
Sbjct: 182 PIVKSMKDCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLT 241

Query: 167 -GNKPKCP 173
            GNK KCP
Sbjct: 242 HGNKYKCP 249

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501570|gb|AFK38851.1| unknown [Lotus japonicus]

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 53/68 (77%), Gaps = 4/68 (5%)

Query: 110 PIVRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG--- 166
           PIV+S KDCIPLC  RC+ HSR N+  RAC TCC RCKCVPPGTYGNREKCGKCYT    
Sbjct: 164 PIVKSMKDCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLT 223

Query: 167 -GNKPKCP 173
            GNK KCP
Sbjct: 224 HGNKYKCP 231

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087713|emb|CBI34969.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 51/65 (78%), Gaps = 4/65 (6%)

Query: 113 RSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG----GN 168
           R+  DCIPLC  RCKAHSR NI  RAC TCC RCKCVPPGTYGNREKCGKCYT     GN
Sbjct: 234 RARLDCIPLCDQRCKAHSRKNICVRACMTCCDRCKCVPPGTYGNREKCGKCYTDMTTHGN 293

Query: 169 KPKCP 173
           KPKCP
Sbjct: 294 KPKCP 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452551|ref|XP_002280219.1| PREDICTED: uncharacterized protein LOC100259439 [Vitis vinifera]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 51/65 (78%), Gaps = 4/65 (6%)

Query: 113 RSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG----GN 168
           R+  DCIPLC  RCKAHSR NI  RAC TCC RCKCVPPGTYGNREKCGKCYT     GN
Sbjct: 167 RARLDCIPLCDQRCKAHSRKNICVRACMTCCDRCKCVPPGTYGNREKCGKCYTDMTTHGN 226

Query: 169 KPKCP 173
           KPKCP
Sbjct: 227 KPKCP 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726602|ref|NP_001237388.1| uncharacterized protein LOC100527019 precursor [Glycine max] gi|255631378|gb|ACU16056.1| unknown [Glycine max]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 49/65 (75%), Gaps = 4/65 (6%)

Query: 113 RSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG----GN 168
           +SNKDCIPLC  RC  HSR  +  RAC TCC RCKCVPPGTYGNREKCGKCYT     GN
Sbjct: 127 KSNKDCIPLCDYRCSLHSRKKLCMRACITCCDRCKCVPPGTYGNREKCGKCYTDMLTHGN 186

Query: 169 KPKCP 173
           K KCP
Sbjct: 187 KFKCP 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|112350249|gb|ABI15167.1| GASA-like protein [Gossypium hirsutum]

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 49/66 (74%), Gaps = 4/66 (6%)

Query: 112 VRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGG 167
           VR+ KDCIPLC  RCK HSR N+  RAC TCC RCKCVPPGTYGNRE CGKCY    T  
Sbjct: 199 VRTKKDCIPLCGQRCKLHSRTNLCLRACMTCCDRCKCVPPGTYGNREMCGKCYSDMRTHR 258

Query: 168 NKPKCP 173
           NK KCP
Sbjct: 259 NKHKCP 264

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725761|ref|NP_001235824.1| uncharacterized protein LOC100527676 precursor [Glycine max] gi|255632928|gb|ACU16818.1| unknown [Glycine max]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 48/65 (73%), Gaps = 4/65 (6%)

Query: 113 RSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG----GN 168
           +S KDCIPLC  RC  HSR  +  RAC TCC RCKCVPPGTYGNREKCGKCYT     GN
Sbjct: 118 KSKKDCIPLCDYRCSLHSRKRLCMRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGN 177

Query: 169 KPKCP 173
           K KCP
Sbjct: 178 KFKCP 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060000|ref|XP_002300026.1| predicted protein [Populus trichocarpa] gi|222847284|gb|EEE84831.1| predicted protein [Populus trichocarpa]

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 48/66 (72%), Gaps = 4/66 (6%)

Query: 112 VRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG----G 167
           VR+  DC PLC  RCK HSR  +  RAC TCC RCKCVPPGTYGNREKCGKCYT      
Sbjct: 158 VRTRSDCTPLCGQRCKLHSRKRLCVRACMTCCDRCKCVPPGTYGNREKCGKCYTDMTTRR 217

Query: 168 NKPKCP 173
           NKPKCP
Sbjct: 218 NKPKCP 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2147810	275	GASA14 "AT5G14920" [Arabidopsi	0.358	0.225	0.651	9e-22
TAIR|locus:2005634	98	GASA1 "AT1G75750" [Arabidopsis	0.323	0.571	0.557	4.2e-15
TAIR|locus:2062175	94	AT2G18420 "AT2G18420" [Arabido	0.323	0.595	0.540	1.6e-13
TAIR|locus:2136892	99	GASA3 "AT4G09600" [Arabidopsis	0.323	0.565	0.524	7.1e-13
TAIR|locus:2199645	119	AT1G22690 "AT1G22690" [Arabido	0.346	0.504	0.492	2.4e-12
TAIR|locus:2136897	99	GASA2 "AT4G09610" [Arabidopsis	0.323	0.565	0.491	5.8e-11
TAIR|locus:505006327	97	GASA5 "GAST1 protein homolog 5	0.317	0.567	0.437	2.5e-10
TAIR|locus:4010713737	103	AT3G10185 [Arabidopsis thalian	0.312	0.524	0.444	4.1e-10
TAIR|locus:2052876	106	AT2G30810 [Arabidopsis thalian	0.317	0.518	0.437	1.4e-09
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.306	0.524	0.435	7.6e-09

TAIR|locus:2147810 GASA14 "AT5G14920" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 43/66 (65%), Positives = 47/66 (71%)

Query:   112 VRSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGG 167
             VR+  DC+PLC  RC  HSR N+  RAC TCC RCKCVPPGTYGN+EKCG CY    T G
Sbjct:   210 VRTRIDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRG 269

Query:   168 NKPKCP 173
              K KCP
Sbjct:   270 GKSKCP 275

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2005634 GASA1 "AT1G75750" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 34/61 (55%), Positives = 39/61 (63%)

Query:   117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPKC 172
             DC   C ARC+   RP +  RAC TCC RC CVPPGTYGN +KC +CY    T G + KC
Sbjct:    39 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKC 97

Query:   173 P 173
             P
Sbjct:    98 P 98

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IMP;IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2062175 AT2G18420 "AT2G18420" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 33/61 (54%), Positives = 36/61 (59%)

Query:   117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPKC 172
             DC   C  RC   SRPN+  RAC TCC RC CV PGT GN +KC  CY    T G + KC
Sbjct:    35 DCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKC-PCYGSLTTHGGRRKC 93

Query:   173 P 173
             P
Sbjct:    94 P 94

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2136892 GASA3 "AT4G09600" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/61 (52%), Positives = 35/61 (57%)

Query:   117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPKC 172
             DC   C  RC   SRPN+  RAC +CC RC CVPPGT GN   C  CY    T G + KC
Sbjct:    40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKC 98

Query:   173 P 173
             P
Sbjct:    99 P 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS;TAS

TAIR|locus:2199645 AT1G22690 "AT1G22690" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 32/65 (49%), Positives = 37/65 (56%)

Query:   113 RSNKDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGN 168
             R   +C   CA RC   SR  +  RAC +CC +C+CVPPGT GN   C  CY    T GN
Sbjct:    56 RPRINCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASC-PCYASIRTHGN 114

Query:   169 KPKCP 173
             K KCP
Sbjct:   115 KLKCP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2136897 GASA2 "AT4G09610" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/61 (49%), Positives = 33/61 (54%)

Query:   117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPKC 172
             DC   C  RC   SR  +  RAC +CC RC CVPPGT GN   C  CY    T G + KC
Sbjct:    40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKC 98

Query:   173 P 173
             P
Sbjct:    99 P 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:505006327 GASA5 "GAST1 protein homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 28/64 (43%), Positives = 37/64 (57%)

Query:   116 KDCIPLCAARCKA--HSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNK 169
             + C   C+ RC A  H +P +F   C  CC +C CVPPGT+GN++ C  CY    T   +
Sbjct:    37 QQCNSKCSFRCSATSHKKPCMF--FCLKCCKKCLCVPPGTFGNKQTC-PCYNNWKTKEGR 93

Query:   170 PKCP 173
             PKCP
Sbjct:    94 PKCP 97

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

TAIR|locus:4010713737 AT3G10185 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query:   117 DCIPLCAARCK--AHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKP 170
             +C P C  RC    + +P +F   C  CC +C CVPPGTYGN++ C  CY    T    P
Sbjct:    44 ECGPRCGDRCSNTQYKKPCLF--FCNKCCNKCLCVPPGTYGNKQVC-PCYNNWKTKSGGP 100

Query:   171 KCP 173
             KCP
Sbjct:   101 KCP 103

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2052876 AT2G30810 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/64 (43%), Positives = 36/64 (56%)

Query:   116 KDCIPLCAARCKA--HSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNK 169
             ++C   C  RC A  H +P +F   C  CC +C CVP GTYG++E+C  CY    T    
Sbjct:    46 EECPKACEYRCSATSHRKPCLF--FCNKCCNKCLCVPSGTYGHKEEC-PCYNNWTTKEGG 102

Query:   170 PKCP 173
             PKCP
Sbjct:   103 PKCP 106

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 27/62 (43%), Positives = 33/62 (53%)

Query:   118 CIPLCAARCK--AHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPK 171
             C   C  RC    + +P +F   C  CC +C CVPPGTYGN++ C  CY    T    PK
Sbjct:    43 CGGQCTRRCSNTKYHKPCMF--FCQKCCAKCLCVPPGTYGNKQVC-PCYNNWKTQQGGPK 99

Query:   172 CP 173
             CP
Sbjct:   100 CP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	2e-16
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	5e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-05
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	1e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-05
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	5e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-04
PRK10547	670	PRK10547, PRK10547, chemotaxis protein CheA; Provi	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	5e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	6e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	7e-04
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	7e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	8e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	9e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	0.001
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	0.001
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.001
COG3898	531	COG3898, COG3898, Uncharacterized membrane-bound p	0.001
TIGR02813	2582	TIGR02813, omega_3_PfaA, polyketide-type polyunsat	0.001
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.002
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.003
PRK10547	670	PRK10547, PRK10547, chemotaxis protein CheA; Provi	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	0.004
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004
TIGR02813	2582	TIGR02813, omega_3_PfaA, polyketide-type polyunsat	0.004
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.004
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.004

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 69.2 bits (170), Expect = 2e-16
 Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCY----TGGNKPKC 172
           DC   CA RC   SR     RAC  CC +C CVPPGTYGN+++C  CY    T G +PKC
Sbjct: 1   DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDEC-PCYNNWKTHGGRPKC 59

Query: 173 P 173
           P
Sbjct: 60  P 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 23/112 (20%), Positives = 31/112 (27%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
           P  P+P P  P     P         PT    P + P   PP    P  APA P+   T 
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNK 116
                 +         K   + P   S  +   +      +  P P      
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKA 472

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 28/107 (26%), Positives = 32/107 (29%), Gaps = 4/107 (3%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
            KTP    A   A   P+        P   P         PP    P    AP    P  
Sbjct: 378 KKTPARPEAAAPAA-APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAA 436

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPPPVSPP-KTAPAPQVPSPASSPMP 110
            P     P      P  P    P  V+ P + AP P V S A +P  
Sbjct: 437 APAAA--PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 28/103 (27%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
           +A     P P PA P A      P PV   P     P        P        P     
Sbjct: 357 EALLVPVPAPQPAKPTAA----APSPVRPTPAPSTRPKAAAAANIP-----PKEPVRETA 407

Query: 61  PPTVMPTPPLKPPPTYPPPVKPPTTT---PPPVSPPKTAPAPQ 100
            P  +P  P+ PP  + P   P  T    P    P  T PAP 
Sbjct: 408 TPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 28/106 (26%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 7   TPVPAPAPPKAPVK-PITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP-PTV 64
            P  AP    A    P   P         PP   PP    PV      APA      P  
Sbjct: 388 APAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP---APVAAPAAAAPAAAPAAAPAA 444

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
           +   P  P    P  V  P    P  +    APAP     A+   P
Sbjct: 445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 16/78 (20%), Positives = 19/78 (24%)

Query: 31  PTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPV 90
           P +   P             P  APA           P    P   P P         P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 91  SPPKTAPAPQVPSPASSP 108
           +PP  A A    + A   
Sbjct: 98  APPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 24/97 (24%), Positives = 26/97 (26%), Gaps = 5/97 (5%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
           P PA AP  A   P  PP    P     P    P   P     P      P  P    P 
Sbjct: 401 PAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA--PAAVALAPAPPAQAAPE 458

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSP 104
               P    P    P   +  P      A A   P+ 
Sbjct: 459 TVAIPVRVAPE---PAVASAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 16/86 (18%), Positives = 20/86 (23%), Gaps = 3/86 (3%)

Query: 24  PPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPP 83
           P     P           +           A   P  P    P  P KP         P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 84  TTTPPPVSPPKTAPAPQVPSPASSPM 109
               PP +    APA        +P+
Sbjct: 98  ---APPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 24/98 (24%), Positives = 29/98 (29%), Gaps = 4/98 (4%)

Query: 9   VPAPAPPKAPVKPITPPPVVKPPT---TYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVM 65
                 PK  +KP+   P   P         P    ++       P  A  P   PPTV 
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 66  PTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPS 103
              P    P  PP   P    P      K  P  +V S
Sbjct: 429 -VDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465

Length = 614

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 27  VVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTT 86
           +V  P   P        +P     PT AP+   K       PP +P      P   P   
Sbjct: 360 LVPVPAPQPAKPTAAAPSP---VRPTPAPSTRPKAAAAANIPPKEPVRETATP---PPVP 413

Query: 87  PPPVSPPKTAPAPQVPSPASSPMPIV 112
           P PV+PP        P    + +P+ 
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVD 439

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 36/113 (31%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 5    PKTPVPAPAPPKAPVKPITPPPVVKPPTTY-----PPPVKPPTTTPPVVKLPTVAPAPPV 59
            P  P P PA P  P  P  P    +PPTT       PP  P    P  +  P VA     
Sbjct: 2736 PAAPAP-PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

Query: 60   KPPTVMPTPPLKPPPTYPPP--VKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
            +     P  P  PP     P    PP  +P    PP T+  P  P P   P P
Sbjct: 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847

Length = 3151

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 21/92 (22%), Positives = 26/92 (28%), Gaps = 7/92 (7%)

Query: 28  VKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTP 87
                     +KP  T P     P+ A A    P            P+ P     P  TP
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAA----AQPSAPQSATQPAGTP 424

Query: 88  PPVSPPKTAPAPQVPS---PASSPMPIVRSNK 116
           P VS    A  P  P    P +      +  K
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEK 456

Length = 614

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 14/83 (16%), Positives = 14/83 (16%), Gaps = 3/83 (3%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
                 A A   A                 P P  P    P     P  A A    P   
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99

Query: 65  MPTPPLKPPPTYPPPVKPPTTTP 87
                   P            TP
Sbjct: 100 PAAAAAAAP---AAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 19/98 (19%), Positives = 22/98 (22%), Gaps = 11/98 (11%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
            +T   T   A A   A      P           PP       PP        PA    
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP-------KPAAAAA 91

Query: 61  PPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPA 98
                P  P        P           V+P + A A
Sbjct: 92  AAA-APAAPPAAAAAAAP---AAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 21/96 (21%), Positives = 25/96 (26%), Gaps = 9/96 (9%)

Query: 8   PVPAPAPPKAPVKPITPPPV-VKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMP 66
           P  AP P  A     +P         + P     P  TPP V +   A  P         
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN------- 438

Query: 67  TPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVP 102
            PP   P    P         P        P+   P
Sbjct: 439 -PPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 28/111 (25%), Positives = 31/111 (27%), Gaps = 1/111 (0%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
                PA AP  A   P             P P   P   PP       A   P  PP  
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460

Query: 65  MPTPPLKPPPTYPP-PVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRS 114
            P+    P P   P P   P   PP    P  APA      A +      +
Sbjct: 461 APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

Length = 824

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 22/100 (22%), Positives = 28/100 (28%), Gaps = 4/100 (4%)

Query: 11  APAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVV---KLPTVAPAPPVKPPTVMPT 67
           AP    AP     PPP   P     P        P +V   K  T      V        
Sbjct: 52  APPAAAAPAAAQ-PPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAA 110

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASS 107
           P  + P                      AP P+VP+ A++
Sbjct: 111 PEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAA 150

Length = 484

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 29/115 (25%), Positives = 35/115 (30%), Gaps = 9/115 (7%)

Query: 5    PKTPVP-APAPPKAPVKPITPP--------PVVKPPTTYPPPVKPPTTTPPVVKLPTVAP 55
            P +  P AP PP  P  P  P          V + P +  P  KP     P V+      
Sbjct: 2831 PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPA 2890

Query: 56   APPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
                     +P    + PP    P  P     PP  P    P P  P P     P
Sbjct: 2891 VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 39  KPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPP-PVSPPKTAP 97
            P +T  P       A A     P   P       P   PP       PP P +    A 
Sbjct: 37  GPGSTAAPTA--AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA 94

Query: 98  APQVPSPASSPMP 110
           AP  P  A++   
Sbjct: 95  APAAPPAAAAAAA 107

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 21/110 (19%), Positives = 26/110 (23%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
                PAPA           P     P   P P   P +             PP   P+ 
Sbjct: 405 APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSA 464

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRS 114
            P P     P       P     P  +    APA       +     +R 
Sbjct: 465 QPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRE 514

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 23/105 (21%), Positives = 27/105 (25%), Gaps = 1/105 (0%)

Query: 7   TPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMP 66
            P  A A P A   P    P    P    PP  P            VA AP  + P    
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 67  TPPLK-PPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
               +      P     P   P         PA   P P ++   
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAA 477

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPP---VVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPP 58
              P    PA AP  +     +P P         + P     P  TPP V +   A   P
Sbjct: 378 HIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAV-P 436

Query: 59  VKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPA 98
           V PP+    P    P  +    K P +    + P    P 
Sbjct: 437 VNPPSTA--PQAVRPAQFKEEKKIPVSKVSSLGPSTLRPI 474

Length = 614

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 25/124 (20%), Positives = 32/124 (25%), Gaps = 5/124 (4%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTP----PVVKLPTVAPAP 57
           AT    PV  PAP  A      P P   P      P            P  + P      
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALA 434

Query: 58  PVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSP-PKTAPAPQVPSPASSPMPIVRSNK 116
             +  +         P   P         P    P P  A A   P+ A+       ++ 
Sbjct: 435 AARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADD 494

Query: 117 DCIP 120
           D  P
Sbjct: 495 DPPP 498

Length = 700

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 18/77 (23%), Positives = 22/77 (28%), Gaps = 2/77 (2%)

Query: 32  TTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVS 91
             Y P      T          A AP   P    P  P   PP    P  PP       +
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAA-ASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA-A 91

Query: 92  PPKTAPAPQVPSPASSP 108
                 AP   + A++P
Sbjct: 92  AAAAPAAPPAAAAAAAP 108

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 19/81 (23%), Positives = 21/81 (25%)

Query: 28  VKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTP 87
            +  +       PP             P P        PTPP  PP         P   P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 88  PPVSPPKTAPAPQVPSPASSP 108
              SPP   P    PSP    
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 5    PKTPVPAPA-PPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPT 63
             ++P   PA P + PV+ +  P V +   ++  P   P   PP  + P      P  PP 
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER-PPQPQAPPPPQPQPQPPPP 2926

Query: 64   VMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVR 113
              P PP  PPP   PP+ P T       P    P P + +     + + R
Sbjct: 2927 PQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPR 2976

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 25/110 (22%), Positives = 31/110 (28%), Gaps = 12/110 (10%)

Query: 7   TPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTP----PVVKLPTVAPAPPVKPP 62
              P   P +   +   P P   P     PP  P    P        L    P PP +PP
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263

Query: 63  --------TVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSP 104
                        PP   P  +P   +      PP   P+  P  Q P  
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQG 313

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 17/103 (16%), Positives = 22/103 (21%), Gaps = 5/103 (4%)

Query: 7   TPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPT-TTPPVVKLPTVAPAPPVKPPTVM 65
               A  PP A        P        P  V+     T    +L   A AP        
Sbjct: 57  AAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAP 116

Query: 66  PTPPL----KPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSP 104
             P      +               P   +    A A  V + 
Sbjct: 117 AAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 15/95 (15%), Positives = 16/95 (16%), Gaps = 11/95 (11%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
           A Y      AP    A        P   P    P    P          P   P P    
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA---PAAPPKPAAAA 90

Query: 62  PTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTA 96
                           PP       P   +     
Sbjct: 91  A--------AAAAPAAPPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 28/111 (25%), Positives = 35/111 (31%), Gaps = 7/111 (6%)

Query: 10  PAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP-------P 62
           P  AP  AP     P    +P    P PV       P    P  APAP           P
Sbjct: 444 PGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP 503

Query: 63  TVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVR 113
               +P    P   P      +   P  + P  A     P+PA++P P   
Sbjct: 504 PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAA 554

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 26/118 (22%), Positives = 29/118 (24%), Gaps = 1/118 (0%)

Query: 1   DATYPKTPVPAPAP-PKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPV 59
            A  P    PAP     A       P     P   P         P       VA A   
Sbjct: 419 VAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA 478

Query: 60  KPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKD 117
            P    P     P    PPP +         +P +   AP      S P P      D
Sbjct: 479 APARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD 536

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 19  VKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPP 78
            +  +     K P        PP  TPP+ +    AP P   PP     P      +  P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP----PTATQASSNAP 567

Query: 79  PVKPPTTTPPPVSPPKTAPAPQVPSPASS 107
              P  ++PPP  P +  P+P   S    
Sbjct: 568 AQIPADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 19/79 (24%), Positives = 22/79 (27%)

Query: 17  APVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTY 76
           +       PP  +     P P  P          PT  P PP         P   P  + 
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 77  PPPVKPPTTTPPPVSPPKT 95
           PPP  P   TP P      
Sbjct: 576 PPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 5    PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
            P      P  P+AP  P   P    PP   PPP  PP   PP+   PT  PA   +P   
Sbjct: 2901 PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEPSGA 2958

Query: 65   MPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRS 114
            +P P L      P  V  P    P  +P + APA   P      +  V S
Sbjct: 2959 VPQPWLG--ALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006

Length = 3151

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 2/105 (1%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
            V         V    P  VV   TT+P  +  P T  P V   +       +       
Sbjct: 890 AVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAV--AQEVAEHAE 947

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIV 112
           P ++P        +   T    V+ P+    P  P  A     + 
Sbjct: 948 PVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVE 992

Length = 1068

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 32  TTYPPPVKP--PTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPP 89
           T+Y  P +P  P    PV+  P +    PV P    P  P+ P P  P PV P    P P
Sbjct: 555 TSYIEPDEPIIPDPVDPVIPDPVIPD--PVDPD---PVDPVIPDPVIPDPVDPDPVDPEP 609

Query: 90  VSPPKTAPAPQVPSPASSPMPIVRSNK 116
           V P    P P +P    S  P +  ++
Sbjct: 610 VDP--VIPDPTIPDIGQSDTPPITEHQ 634

Length = 955

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 31/109 (28%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 5    PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
            P TP PAP        P+ P P      +   P  P     P        PA P +PPT 
Sbjct: 2705 PPTPEPAP-HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT 2763

Query: 65   MPTPPLKPPPTYPPPVKPPTTTPPPVSP--PKTAPAPQVPSPASSPMPI 111
               PP   PP  P    P   T P V+         P    PA  P  +
Sbjct: 2764 -AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 25/103 (24%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
              APA          P     P      P       P     P  APAP   PP+    
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAA--AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGN 447

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
            P    P+ PP   P     P  +      A   P+P ++P P
Sbjct: 448 APAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP 490

Length = 824

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 51  PTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKP--PTTTPPPVSPPKTAPAP--QVPSPAS 106
           P+ A +P VK     P P L  P  +P P KP  P   P  +  P +AP P  Q P   S
Sbjct: 382 PSPAGSPDVKKK--APEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARS 439

Query: 107 SPMP 110
           +P+P
Sbjct: 440 APLP 443

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
             P     + P   + P    +P    P PV+ P   P           P  +P +    
Sbjct: 99  AQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQP-------EQPLQQPVSPQVA 151

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSP 108
           P  +P  + P P +       PV+ P+  P  +       P
Sbjct: 152 PAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKP 192

Length = 333

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 24/116 (20%), Positives = 31/116 (26%), Gaps = 3/116 (2%)

Query: 4   YPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPT 63
               P  A         P  P     P     P        P      +  P P  + PT
Sbjct: 175 EDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPS--SFQSDTPPPSPESPT 232

Query: 64  VMPTPPLKPPPTYPPP-VKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDC 118
               PP    P  PP    PP +T  P  P  +A    +         I ++ K  
Sbjct: 233 NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDAIAKAQKHA 288

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 21  PITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPV 80
               P   K P    P    P   P        APAP   P      P   P    P PV
Sbjct: 371 EAAAPAEKKTPA--RPEAAAPAAAPVAQ--AAAAPAPAAAPAAAASAPAAPPAAAPPAPV 426

Query: 81  KPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
             P    P  +P   APA    +PA     
Sbjct: 427 AAPAAAAPAAAPAA-APAAVALAPAPPAQA 455

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 2/77 (2%)

Query: 35  PPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPK 94
             P +  T   P    P  AP             P        P   P    P PV+ P 
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP--AAAASAPAAPPAAAPPAPVAAPA 430

Query: 95  TAPAPQVPSPASSPMPI 111
            A     P+ A + + +
Sbjct: 431 AAAPAAAPAAAPAAVAL 447

Length = 618

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 7   TPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMP 66
                P PP+    P  P P +  PT   PP  PP   P   +  + APA         P
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI-------P 571

Query: 67  TPPLKPPPTYPPPVKPPTTTPPP 89
                PPP    P   PT    P
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 24/109 (22%), Positives = 28/109 (25%), Gaps = 4/109 (3%)

Query: 11  APAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPL 70
               P+ P  P    P   PP     P + P   PP    P       V+P   +P P  
Sbjct: 166 RQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQ 225

Query: 71  KPPPTYPPPVKPPTTTPPPVSPPKT----APAPQVPSPASSPMPIVRSN 115
            P     PP  P    P             P P    P     P     
Sbjct: 226 APAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 20/112 (17%), Positives = 29/112 (25%), Gaps = 3/112 (2%)

Query: 6   KTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTT-TPPVVKLPTVAPAPP-VKPPT 63
           + P P P   +                          + + P    P V   P   + P+
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 64  VMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSN 115
                 L P P+      PP +   P +P    P P  P P         S 
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPP-PGPAAPPPPPVQQVPPLST 256

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 27/102 (26%), Positives = 33/102 (32%), Gaps = 2/102 (1%)

Query: 11  APAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPL 70
           A  P       I  P    P  T P     P++  P    P+ AP+P V      P PP 
Sbjct: 386 AEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPR 445

Query: 71  KPPPTYPPPVKPPTTTPP--PVSPPKTAPAPQVPSPASSPMP 110
              P  P P  P  +  P  P S    + AP      S    
Sbjct: 446 SGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 21/101 (20%), Positives = 25/101 (24%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
           P  A     A      P P    P     P       P     P  AP  P         
Sbjct: 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA 453

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSP 108
           P   P         P     P  +       P  P+PA++P
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Length = 824

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 19/78 (24%), Positives = 20/78 (25%), Gaps = 3/78 (3%)

Query: 15  PKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPP 74
              P          K   T P   K    TP         P    KPP      P   PP
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPE---PAPAAKPP 178

Query: 75  TYPPPVKPPTTTPPPVSP 92
             P     P  T  P+S 
Sbjct: 179 PTPVARADPRETRVPMSR 196

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 12/62 (19%), Positives = 16/62 (25%)

Query: 54  APAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVR 113
             A P               P    P   P     P  P    P    P+    P P+ R
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 114 SN 115
           ++
Sbjct: 185 AD 186

Length = 418

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 24/108 (22%), Positives = 30/108 (27%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
           DA    T      P +        P      +   P    P   P      ++ PAP   
Sbjct: 160 DADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSF 219

Query: 61  PPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSP 108
                P  P  P    PPP       PP    P  + A   P  AS+ 
Sbjct: 220 QSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 21/68 (30%), Positives = 23/68 (33%)

Query: 11  APAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPL 70
           APAPP A     TP     PP    PPV P     P    P  APAPP        +   
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 71  KPPPTYPP 78
               +   
Sbjct: 441 AAAASAGD 448

Length = 576

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 21/106 (19%), Positives = 26/106 (24%), Gaps = 6/106 (5%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPT-TTPPVVKLPTVAPAPPV 59
            A  P    P PA   A V      P        P  V+     T    +L   A AP  
Sbjct: 55  AAAAPAAAQPPPAAAPAAV----SRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAA 110

Query: 60  KPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPA 105
                 P  P +         +          P   A A    + A
Sbjct: 111 PEAQA-PAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/106 (23%), Positives = 28/106 (26%), Gaps = 4/106 (3%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
           P      PA P AP  P  P P          P +      P V  P   P     P   
Sbjct: 608 PPEEAARPAAPAAPAAPAAPAP----AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAS 663

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
                         P  PP    P         AP  P+PA +  P
Sbjct: 664 DGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

Length = 824

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 1/109 (0%)

Query: 1    DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
            + T+P+  + AP   +  V   +   V +    +  PV  P      ++         V 
Sbjct: 913  ETTHPEV-IAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVA 971

Query: 61   PPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPM 109
             P V+  P           V+  T   P V+P +   A    + A++PM
Sbjct: 972  EPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPM 1020

Length = 1068

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 17/114 (14%), Positives = 28/114 (24%), Gaps = 7/114 (6%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
           P   V  P  P  P  P + P             +       + +      A   +P   
Sbjct: 387 PTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA 446

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPPPVSPPK-------TAPAPQVPSPASSPMPI 111
               P+         V+P  +        K       T P      P ++P  +
Sbjct: 447 SRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKAL 500

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 36/149 (24%), Positives = 47/149 (31%), Gaps = 17/149 (11%)

Query: 2    ATYPKTPVPAPAPPKAPVKPITPPPV------VKPPTTYPPPVKPPTTTPPVVKLPTV-- 53
            A        A +PP+ P +    P V        PP   P P   P        LP    
Sbjct: 2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPA 2726

Query: 54   -----APAPPVKP-PTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPK---TAPAPQVPSP 104
                 +PA P  P P  +P  P  P     P   P T  PP  +PP      P  ++  P
Sbjct: 2727 AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

Query: 105  ASSPMPIVRSNKDCIPLCAARCKAHSRPN 133
            A + +   R +       A    A   P 
Sbjct: 2787 AVASLSESRESLPSPWDPADPPAAVLAPA 2815

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 23/108 (21%), Positives = 26/108 (24%)

Query: 7   TPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMP 66
               APA P AP          +      P V  P   P  V +P  +      P     
Sbjct: 616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Query: 67  TPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRS 114
             P  PPP   P          P  P     A      A  P      
Sbjct: 676 AAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQ 723

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 15  PKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPP 74
           P A +  I        PT  P P  PP    P         AP  K     P+PP     
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQP--------SAPKTKQAATTPSPPPAKAS 412

Query: 75  TYPPPVKPPTTTPPPVSPPKTAPAPQ 100
             P PV    T P P  P   A AP 
Sbjct: 413 P-PIPVPAEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
            A   +    +      P    +PPP    P+         T +PP  K     P P  +
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA-E 420

Query: 61  PPTVMPTPPLKPPPTYPP 78
           P    PTPP       P 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 10  PAPAPPKAPVKPITPPPVVKPPTTYPPPVKP--PTTTPPVVKLPTVAPAP----PVKPPT 63
           P+PA     VK   P P +  P  +P P KP  P   P  +  P  AP P    PV    
Sbjct: 382 PSPAG-SPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 64  VMPTPPLKPPPTYPPPVKP 82
            +P  P    P      KP
Sbjct: 441 PLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 15/54 (27%)

Query: 45  PPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPA 98
              +   T   AP  K         + P  + PP +K      P     +   A
Sbjct: 219 ADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTA 272

Length = 670

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 23/89 (25%), Gaps = 7/89 (7%)

Query: 29  KPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPP 88
            P    P P  PP +  P       +      P   +  P     P  PPP   P   P 
Sbjct: 360 HPAAPLPEPEVPPQSAAPAA-----SAQATAAPTAAVAPPQAPAVP--PPPASAPQQAPA 412

Query: 89  PVSPPKTAPAPQVPSPASSPMPIVRSNKD 117
              P  T+                ++ K 
Sbjct: 413 VPLPETTSQLLAARQQLQRAQGATKAKKS 441

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 2/107 (1%)

Query: 10   PAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPT-VMPTP 68
            P     +  V  ++      P    P         P     P  +PA P+ PPT   PT 
Sbjct: 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838

Query: 69   PLKPPPTYPPPVKPPTTTPPPVSPPKTAPA-PQVPSPASSPMPIVRS 114
            P  PP   PP +    +  P     +  P+      PA+   P VR 
Sbjct: 2839 PPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 23/99 (23%), Positives = 26/99 (26%), Gaps = 4/99 (4%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
           A        APAP  AP +P   P     P   P P             P  AP+    P
Sbjct: 413 AAAAPAAAAAPAPAAAP-QPAPAPAPAPAP---PSPAGNAPAGGAPSPPPAAAPSAQPAP 468

Query: 62  PTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQ 100
                  P   P   PP    P   P   + P       
Sbjct: 469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 20/110 (18%), Positives = 21/110 (19%), Gaps = 3/110 (2%)

Query: 2   ATYPKTPVPAPA--PPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPV 59
                      A     A                 P     P   P     P        
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449

Query: 60  KPPTVMPTPPLKPPPT-YPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSP 108
                 P P   P     P P   P  T  P   P  APAP     A + 
Sbjct: 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 13/75 (17%), Positives = 18/75 (24%), Gaps = 2/75 (2%)

Query: 36  PPVKPPTTTPPVVK--LPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPP 93
             +                    PP       P          PPP K     P P  P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 94  KTAPAPQVPSPASSP 108
           + +P P   +  + P
Sbjct: 423 EPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 16/79 (20%), Positives = 23/79 (29%)

Query: 39  KPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPA 98
              T   P     +  P  P  P          P P  PPP     ++  P   P  +  
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576

Query: 99  PQVPSPASSPMPIVRSNKD 117
           P       +P P   S+ +
Sbjct: 577 PPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 22/114 (19%), Positives = 28/114 (24%), Gaps = 7/114 (6%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
           A +P  P P   PP A +     P  +  P         P         PT   +P   P
Sbjct: 45  AEFPWDPSPQAPPPVAQL-----PQPLPQPPPTQALQALPAGDQQQHNTPT--GSPAANP 97

Query: 62  PTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSN 115
           P     P     PT             PV   +      +  PA          
Sbjct: 98  PATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQ 151

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 19/83 (22%), Positives = 24/83 (28%)

Query: 30  PPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPP 89
             T  P      T T         APAP V P       P +          P     P 
Sbjct: 173 ATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPD 232

Query: 90  VSPPKTAPAPQVPSPASSPMPIV 112
            + P       V +PA+ P  +V
Sbjct: 233 GAAPLPTDQAGVSTPAADPNALV 255

Length = 331

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 10   PAPAPPKAPVKPITPPPVVKPPTTYP-PPVKPPTTTPPVVKLPTVAPAPPVKPP--TVMP 66
            P+P  P  P   +  P    PP   P  P+ PPT+  P    P   P PP  P   +V P
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858

Query: 67   TPPL-KPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
               + + PP+  P  KP     PPV         +     + P  
Sbjct: 2859 GGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 17/76 (22%), Positives = 21/76 (27%)

Query: 13  APPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKP 72
           A          P      P   PPP     + P   +  T    PP K    +P P    
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 73  PPTYPPPVKPPTTTPP 88
            P+  PP       P 
Sbjct: 423 EPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 16/75 (21%), Positives = 19/75 (25%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
           P   +   A   AP  P   P    PP    P              P    +PP+  P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 65  MPTPPLKPPPTYPPP 79
              P   PP      
Sbjct: 421 PTEPSPTPPANAANA 435

Length = 620

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 36  PPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYP-PPVKPPTTTPPPVSPPK 94
            PV          +    AP P        P  P   PP        P    P  V  P 
Sbjct: 45  GPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPS 104

Query: 95  TAPA---PQVPSPASSP 108
            APA   P  PS A++P
Sbjct: 105 AAPAPAEPVEPSLAANP 121

Length = 931

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 15/118 (12%)

Query: 8    PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPT---VAPA------PP 58
            P    AP  A     +P   + PPT+  P   PP   PP   LP    VAP       PP
Sbjct: 2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

Query: 59   VKPPTVMPTPPLKPP------PTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
             + P   P  P +PP      P      +     P     P    AP  P P   P P
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 22/71 (30%), Positives = 29/71 (40%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
           A    TP P P+PP AP++P  P       T  PPP K     P   +    +P PP   
Sbjct: 373 APANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANA 432

Query: 62  PTVMPTPPLKP 72
               P+  L+ 
Sbjct: 433 ANAPPSLNLEE 443

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 26/118 (22%), Positives = 34/118 (28%), Gaps = 9/118 (7%)

Query: 3   TYPKTPVPAPAPPKAPVKPITPP---PVVKPPTTYPP--PVKPPTTTPPVVKLPTVAPAP 57
             P       A   +P     PP      + P   PP   V P     P    P     P
Sbjct: 73  HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQP 132

Query: 58  PVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQV---PSPASSPMPIV 112
             +P    P      P   P P +P  + P P         P     P P + P P++
Sbjct: 133 AYQPQPEQPLQQPVSPQVAPAP-QPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Length = 333

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 5/69 (7%)

Query: 42  TTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQV 101
              PP        PA P  PP     P   PP     P +P    P P   P  A AP  
Sbjct: 381 APAPPSAAWGAPTPAAPAAPP-----PAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPA 435

Query: 102 PSPASSPMP 110
            S   +   
Sbjct: 436 RSADPAAAA 444

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 17/78 (21%), Positives = 25/78 (32%)

Query: 12  PAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLK 71
           P+   + +   + P    P     PP  P   + P  K     P+PP    +     P +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 72  PPPTYPPPVKPPTTTPPP 89
           P    P P       PP 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 20/121 (16%), Positives = 31/121 (25%), Gaps = 15/121 (12%)

Query: 11  APAPPKAPVKPITPPPVVKP---------PTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
               P+      +PPP   P          +   P         P +    +   P    
Sbjct: 524 KELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFA 583

Query: 62  PTVMPTPPLK-----PPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNK 116
            TV  T  ++          P           P S  K A      +P+SS +   R+  
Sbjct: 584 NTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLN-GKTPSSSLVGAARNAG 642

Query: 117 D 117
            
Sbjct: 643 A 643

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 25/117 (21%), Positives = 33/117 (28%), Gaps = 7/117 (5%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
            A  P   +P P P   P + +   P         P   P    P    LP     P ++
Sbjct: 54  QAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQ 113

Query: 61  PPTVMPTPPLKP-----PPTYPPPVKPPTT-TPPPVSPPKTAPA-PQVPSPASSPMP 110
                  P   P      P   P  +P        +     APA  Q+PS   S   
Sbjct: 114 TEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQK 170

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 19/125 (15%), Positives = 32/125 (25%), Gaps = 6/125 (4%)

Query: 14  PPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLP-----TVAPAPPVKPPTVMPTP 68
              AP +    PP    PT   P      T   ++ LP     T AP        +  + 
Sbjct: 60  KSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSARRLTRSE 119

Query: 69  PLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDCIPLCAARCKA 128
            +          +P           +     +  S    P+         +P  A    A
Sbjct: 120 GVARHEMEDLAGRPVVKPDADRQLRQD-ILNKSSSSRRPPVSKEEGTSSKMPATALASAA 178

Query: 129 HSRPN 133
             + +
Sbjct: 179 LFKDD 183

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 20/70 (28%), Positives = 20/70 (28%)

Query: 35  PPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPK 94
                P   TP     P  AP  P  P T        PPP    P  P    P   SP  
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428

Query: 95  TAPAPQVPSP 104
            A A   P  
Sbjct: 429 PANAANAPPS 438

Length = 620

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 1/105 (0%)

Query: 4   YPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPT 63
           YP          +           V         V+P  + P V  +  V   P V    
Sbjct: 845 YPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEP 904

Query: 64  VMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSP 108
             P   +    T+P  +  P T  P V         Q  +  + P
Sbjct: 905 Q-PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEP 948

Length = 1068

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.4 bits (90), Expect = 9e-04
 Identities = 19/79 (24%), Positives = 23/79 (29%), Gaps = 3/79 (3%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
              +     +     TP P   PP     P  P T        P  A A P  P    P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPV---PA 419

Query: 68  PPLKPPPTYPPPVKPPTTT 86
            P +P PT P        +
Sbjct: 420 EPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPP-VVKLPTVAPAPPVKPPT 63
            +  V  P     P        V+ P    PP  +      P  V+ P  + A  V    
Sbjct: 118 QEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAID 177

Query: 64  VMPTPPLKPPPTYPPPVKPPTTTPP 88
              T  L P P  PPPV P  +T  
Sbjct: 178 TPVTLELPPAPQPPPPVVPQPSTMV 202

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 60  KPPTVMPTPPLKPPPTYPPPVKPPTTTP-PPVSPPKTAPAPQVPSPASSPMPIVRSNKDC 118
            P   +P P + P    P      T  P   V+PP+    P  P+ A    P V   +  
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 119 IPLCAAR 125
             L AAR
Sbjct: 420 SQLLAAR 426

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 18/100 (18%), Positives = 23/100 (23%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
              +  PP+   +P  P     P    P               P VA          +P 
Sbjct: 602 APASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASS 107
                              PPP   P    AP   +PA  
Sbjct: 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 17/72 (23%), Positives = 22/72 (30%)

Query: 46  PVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPA 105
             +     A AP    P   P+PP  P     P  K   TTP P     + P P    P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 106 SSPMPIVRSNKD 117
                   +  +
Sbjct: 423 EPSPTPPANAAN 434

Length = 620

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 14/82 (17%)

Query: 18  PVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTP--PLKPPPT 75
           PV P+ P PV+  P   P PV P    P +          PV P  V P P  P+ P PT
Sbjct: 568 PVDPVIPDPVIPDPVD-PDPVDPVIPDPVI--------PDPVDPDPVDPEPVDPVIPDPT 618

Query: 76  YPPPVKPPTTTPPPVSPPKTAP 97
            P   +  T   PP++  +  P
Sbjct: 619 IPDIGQSDT---PPITEHQFRP 637

Length = 955

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 19/109 (17%), Positives = 27/109 (24%), Gaps = 3/109 (2%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
              + A P     P   P + K      P     T                VKP     +
Sbjct: 551 VALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASS 610

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNK 116
            PL  P +    +KP T      S      A    + +   +P      
Sbjct: 611 KPLTGPGS---DLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGF 656

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 23/125 (18%), Positives = 34/125 (27%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
             P  A   A  +   PP    PP T            PV        +   +       
Sbjct: 410 LAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQ 469

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDCIPLCAARCK 127
           PP        P    P       +P   AP+   P+          ++++  P  AA   
Sbjct: 470 PPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529

Query: 128 AHSRP 132
             +RP
Sbjct: 530 PEARP 534

Length = 830

>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function unknown]

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 17/86 (19%), Positives = 21/86 (24%), Gaps = 4/86 (4%)

Query: 16  KAPVKPITPP-PVVKPPTTYPPP---VKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLK 71
           KAP   +  P          P P    K     P     P    A      T      +K
Sbjct: 424 KAPTGQLAHPIEDRDEAIMAPLPEAPAKSAIEEPADELEPVAEAAETEGKGTDRSARAVK 483

Query: 72  PPPTYPPPVKPPTTTPPPVSPPKTAP 97
           P P   P   P +      +     P
Sbjct: 484 PIPVIAPAAYPASAKTAEPAGFFGRP 509

Length = 531

>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 11   APAPPKAPV--KPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTP 68
            +P   +APV    +T  PVV+  T    P  P    P VV  P V+ AP     T +   
Sbjct: 1120 SPLATQAPVIKSVVTQAPVVQV-TISVAPAAP--VLPAVVSPPVVSAAPAQSVATAVAMA 1176

Query: 69   PLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPA 105
            P+   P   P  +  +    P      AP   V   A
Sbjct: 1177 PVAEVPIAVPVQQ--SVDYMPSVAQAAAPQASVNDSA 1211

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 13/72 (18%), Positives = 16/72 (22%)

Query: 39  KPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPA 98
           KP              PA P                  P        + P   P    PA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 99  PQVPSPASSPMP 110
           P     A++P  
Sbjct: 425 PVAAPAAAAPAA 436

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 25/106 (23%), Positives = 27/106 (25%)

Query: 7   TPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMP 66
            P PAPA P AP       P   P  T P          P       +   P     V  
Sbjct: 682 PPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741

Query: 67  TPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIV 112
            P    PP        P   P P      A AP    P+       
Sbjct: 742 PPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAE 787

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 32/119 (26%), Positives = 34/119 (28%), Gaps = 11/119 (9%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
           DA+      PA A   AP  P   P    P          P   P        A  P  +
Sbjct: 661 DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720

Query: 61  PPTVM-----------PTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSP 108
           PP                 PL P P  PP        PPP   P  A AP    P S P
Sbjct: 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779

Length = 824

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 14/61 (22%), Positives = 17/61 (27%)

Query: 50  LPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPM 109
           L  +AP     P    P P   P     P        P  V   K   A +    A +  
Sbjct: 48  LAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 110 P 110
           P
Sbjct: 108 P 108

Length = 484

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 16/76 (21%), Positives = 22/76 (28%)

Query: 35  PPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPK 94
           P               PT AP P   P  + P+ P        P   P   +PP   P +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 95  TAPAPQVPSPASSPMP 110
                  P   ++  P
Sbjct: 421 PTEPSPTPPANAANAP 436

Length = 620

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 31/104 (29%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 9   VPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVV-KLPTVAPAPPVKPPTVMPT 67
           +P   PP+    P   PP   P    PP   P    P      P+ APA P  P    P 
Sbjct: 180 LPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLP----PQ 235

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPI 111
            P +PPP   P     +   PP  P       Q P P + P P 
Sbjct: 236 LPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQ 279

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 24  PPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMP---TPPLKPPPTYPPPV 80
             P + P  T   P +PP      V+    A AP + P TV P       +P P  PP  
Sbjct: 51  DEPDMMPAATQALPTQPPEGAAEAVRAGD-AAAPSLDPATVAPPNTPVEPEPAPVEPPKP 109

Query: 81  KPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
           KP     P   P +   AP  P P   P+ 
Sbjct: 110 KPVEKPKPKPKPQQKVEAPPAPKPEPKPVV 139

Length = 226

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 8/102 (7%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPP------VVKLPTVAPAPP 58
            + P        + +             T     +P   +        + +L +V PAP 
Sbjct: 408 QQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPS 467

Query: 59  VKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQ 100
                       +   T P  VK      P     K A   +
Sbjct: 468 ALEKAPAKKEAYRWKATNPVEVKKEPVATP--KALKKALEHE 507

Length = 647

>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 6/54 (11%)

Query: 9   VPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPP 62
             A A P+   +  T    V P  + PP +K      P             K  
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAP------AGRVEREKTA 272

Length = 670

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 29/105 (27%), Positives = 33/105 (31%), Gaps = 1/105 (0%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
           A  P  P P        +   T     +PP      V+      P +   TVAP      
Sbjct: 39  AAIPLVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVE 98

Query: 62  PTVMPTPPLKPPPTYPPPVKP-PTTTPPPVSPPKTAPAPQVPSPA 105
           P   P  P KP P   P  KP P         PK  P P V   A
Sbjct: 99  PEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143

Length = 226

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 17/70 (24%), Positives = 20/70 (28%)

Query: 14  PPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPP 73
           P  +    I    VV         V P     P V  P     P   PP  +  P L  P
Sbjct: 334 PSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAP 393

Query: 74  PTYPPPVKPP 83
           P    P +  
Sbjct: 394 PGLVAPTEIN 403

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 20/84 (23%), Positives = 22/84 (26%), Gaps = 2/84 (2%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
                P  A P APV           P   P  V      P      TVA    V P   
Sbjct: 412 SAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA 471

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPP 88
           + +    P P   P     T T  
Sbjct: 472 VASAA--PAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 18/70 (25%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
           P  A      P  P  PPP   PP     P +P    P     P  A APP    +  P 
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPP--ARSADPA 441

Query: 68  PPLKPPPTYP 77
                   + 
Sbjct: 442 AAASAGDRWR 451

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 10/78 (12%)

Query: 21  PITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPV 80
           P  P      PT   P   PP   PPV   P  APA P             P P  P   
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPV---PPAAPARPAAARP-------APAPAPPAAA 431

Query: 81  KPPTTTPPPVSPPKTAPA 98
            PP  +  P +       
Sbjct: 432 APPARSADPAAAASAGDR 449

Length = 576

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 13/88 (14%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
            A   +      A   AP+               PPPV P               AP  +
Sbjct: 47  VAKAAEQMAAPEAAEAAPLPAAAESIAS---PEVPPPVPPAPAQEG--------EAPAAE 95

Query: 61  PPTVMPTPPLKPPPTYPPPVKPPTTTPP 88
            P+ +P P   P P    PV+P     P
Sbjct: 96  QPSAVPAPSAAPAPA--EPVEPSLAANP 121

Length = 931

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 23/99 (23%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 8   PVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPT 67
           PVPA A  +A           +PP        P +  PP         A      T    
Sbjct: 448 PVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAV 507

Query: 68  PPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPAS 106
           P  + P        P    PP   P    P P   +PA+
Sbjct: 508 PDARAPAAASREDAPAAAAPPA--PEARPPTPAAAAPAA 544

Length = 830

>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 16/93 (17%)

Query: 27   VVKPPTTYPPPVKPPTTTPPVVKLPTVAPAP--PVKPPTVMPTPPLKPPPTYPPPVKPPT 84
             + P  T  P +K   T  PVV+  T++ AP  PV P  V       PP     P +   
Sbjct: 1118 KLSPLATQAPVIKSVVTQAPVVQ-VTISVAPAAPVLPAVV------SPPVVSAAPAQSVA 1170

Query: 85   TTPP-------PVSPPKTAPAPQVPSPASSPMP 110
            T          P++ P       +PS A +  P
Sbjct: 1171 TAVAMAPVAEVPIAVPVQQSVDYMPSVAQAAAP 1203

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 61 PPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTA 96
          PP   P PP  PPP + PP +PP   PP V+  K +
Sbjct: 5  PPGNPPPPP--PPPGFEPPSQPPPPPPPGVNVKKRS 38

Length = 2365

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 18/69 (26%), Positives = 20/69 (28%), Gaps = 4/69 (5%)

Query: 40  PPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAP 99
           P      V          P  P T     P+ PP     PV+P   TP PV     AP  
Sbjct: 112 PQVPRSTVQIQQQAQQQQP--PATTAQPQPVTPPRQTTAPVQP--QTPAPVRTQPAAPVT 167

Query: 100 QVPSPASSP 108
           Q        
Sbjct: 168 QAVEAPKVE 176

Length = 256

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	99.96

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=99.96  E-value=1e-29  Score=178.69  Aligned_cols=56  Identities=61%  Similarity=1.377  Sum_probs=54.9

Q ss_pred             CChHHHHHHHhhcCCccHHHHHHHhhcCCccccCCCCCCCcCCCcccccC----CCCCCCC
Q 044862          117 DCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYGNREKCGKCYTG----GNKPKCP  173 (173)
Q Consensus       117 dC~~~C~~RCs~~sr~k~CmraC~~CC~kC~CVPpGTyGNkeeCPpCY~d----~G~pKCP  173 (173)
                      ||+++|++||++++++++|||+||+||++|+|||+|||||+|+|+ ||+|    +|++|||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~Cp-CY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECP-CYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCC-ChhhhhccCCCCCCc
Confidence            799999999999999999999999999999999999999999997 9999    9999998

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	6e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	9e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	6e-05
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	8e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-04

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.5 bits (135), Expect = 5e-10
 Identities = 10/129 (7%), Positives = 21/129 (16%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
                   +                         K              +          
Sbjct: 30  SGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAE 89

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDCIPLCAA 124
             +             + P+    P S  +T   P+  +      P   +NK    +   
Sbjct: 90  AASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPD 149

Query: 125 RCKAHSRPN 133
             K   +  
Sbjct: 150 VPKNTEKTL 158

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 7/99 (7%), Positives = 12/99 (12%), Gaps = 2/99 (2%)

Query: 10  PAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPP 69
               P  +           +  T      K              A        T  P   
Sbjct: 23  ETAVPENSGANTELVSGESEHST--NEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 70  LKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSP 108
                                      P+ +    +   
Sbjct: 81  EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKE 119

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 9/76 (11%), Positives = 12/76 (15%)

Query: 35  PPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPK 94
             P      T  V      +     K          K            T +P       
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 95  TAPAPQVPSPASSPMP 110
           T  A    +       
Sbjct: 85  TETAEAASAAKPEEKA 100

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 53.2 bits (127), Expect = 5e-09
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
           +++      +   P+     I    V    + +   + PP T P     P  APA    P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 62  PTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSP 108
            T   T           P  P TT+  P       P P+ P+ A   
Sbjct: 63  DT--VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPA 107

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.1 bits (119), Expect = 7e-08
 Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 2/127 (1%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
              P+                     + PP T P P  PP   P     P       V  
Sbjct: 13  GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV-- 70

Query: 62  PTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDCIPL 121
              +   P  P  T   P       P P +P    PA     P     P+   +   +  
Sbjct: 71  LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEE 130

Query: 122 CAARCKA 128
            + R K 
Sbjct: 131 VSRRIKR 137

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 19/93 (20%), Positives = 22/93 (23%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
             T P    P P  P A   P T             P  P TT+          P P   
Sbjct: 42  PVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAP 101

Query: 61  PPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPP 93
                      P   + P  +P       VS  
Sbjct: 102 ASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRR 134

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 16/71 (22%)

Query: 39  KPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPA 98
                      L        +   +V           +PP   P    PPP +P    P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 99  PQVPSPASSPM 109
             V   +    
Sbjct: 63  DTVTGDSVLQR 73

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 20/98 (20%), Positives = 26/98 (26%), Gaps = 2/98 (2%)

Query: 18  PVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKL-PTVAPAPPVKPPTVMPTPPLKPPPTY 76
           P  P +P        T      P T  PP +   PT  P P        PTPP       
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 77  PPPVKPPTTTPP-PVSPPKTAPAPQVPSPASSPMPIVR 113
                  T          +   A     P  +   +V+
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQ 99

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 20/94 (21%), Positives = 21/94 (22%), Gaps = 5/94 (5%)

Query: 3  TYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPP 62
          T P TP  A A   A   P TP P          P       P         P  P    
Sbjct: 6  TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKP-----KNPTPPRPAGDN 60

Query: 63 TVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTA 96
            +                  T     V PP T 
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.8 bits (103), Expect = 8e-06
 Identities = 18/91 (19%), Positives = 21/91 (23%), Gaps = 2/91 (2%)

Query: 11  APAPPKAP-VKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPP 69
           AP  P  P V   T      P T  PP +    T  P  K     P  P  P        
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNK-KPKNPTPPRPAGDNAT 62

Query: 70  LKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQ 100
           +                    +     P P 
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 47.6 bits (111), Expect = 5e-07
 Identities = 23/99 (23%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 5   PKTPVPAPAPPKAPVKPITP-PPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP-P 62
           P   V   A     V P++  P V     T         +    ++   V      KP P
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTP 453

Query: 63  TVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQV 101
            V PT P KP      P+KP    P     P      + 
Sbjct: 454 PVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.5 bits (103), Expect = 6e-06
 Identities = 16/72 (22%), Positives = 19/72 (26%), Gaps = 5/72 (6%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
           P          +A   P        PP     P  P   T    K    AP  P      
Sbjct: 428 PNIWYSLNGKIRAVNVPKVTKEKPTPPV---KPTAPTKPTYETEKPLKPAPVAPNYEKE- 483

Query: 65  MPTPPLKPPPTY 76
            PTPP +    +
Sbjct: 484 -PTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.7 bits (101), Expect = 9e-06
 Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 2/82 (2%)

Query: 3   TYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPT--TTPPVVKLPTVAPAPPVK 60
             P  P       K P    +    ++         + PT    P     PT     P+K
Sbjct: 413 DMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLK 472

Query: 61  PPTVMPTPPLKPPPTYPPPVKP 82
           P  V P    +P P        
Sbjct: 473 PAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 22/103 (21%), Positives = 25/103 (24%), Gaps = 8/103 (7%)

Query: 15  PKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP-----PTVMPTPP 69
               +K   P   V    T    V P +  P V          P               P
Sbjct: 385 GAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVP 444

Query: 70  LKPP--PTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
                 PT P     PT        P   PAP  P+    P P
Sbjct: 445 KVTKEKPTPPVKPTAPTKPTYETEKPLK-PAPVAPNYEKEPTP 486

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 14/63 (22%), Positives = 16/63 (25%), Gaps = 7/63 (11%)

Query: 1   DATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVK 60
                  P      P  PVKP         PT      + P    PV       P PP +
Sbjct: 437 KIRAVNVPKVTKEKPTPPVKP-------TAPTKPTYETEKPLKPAPVAPNYEKEPTPPTR 489

Query: 61  PPT 63
              
Sbjct: 490 LEH 492

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 14/117 (11%), Positives = 21/117 (17%)

Query: 4   YPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPT 63
              TP+  PA    P  P             P    P       +          +   T
Sbjct: 18  QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77

Query: 64  VMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKDCIP 120
                          P        P           Q  +  +   P     ++  P
Sbjct: 78  TSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRP 134

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 14/110 (12%), Positives = 24/110 (21%), Gaps = 3/110 (2%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPV-VKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPT 63
            +      A P        PP        +Y     PP    P +           +   
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71

Query: 64  VMP--TPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPI 111
            +   T  +     +  P+  P     P  P +     Q      +    
Sbjct: 72  QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 3/98 (3%)

Query: 13  APPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKP 72
             P+A ++       ++ P  + PP  P            +   P    P++     L P
Sbjct: 8   VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSY---GQMGMPPQGAVPSMGQQQFLTP 64

Query: 73  PPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMP 110
                       TT          P     +     +P
Sbjct: 65  AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 10/81 (12%), Positives = 15/81 (18%)

Query: 30  PPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYPPPVKPPTTTPPP 89
               YP            ++ P     P       M    +  PP    P         P
Sbjct: 5   KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64

Query: 90  VSPPKTAPAPQVPSPASSPMP 110
                     Q  +  +    
Sbjct: 65  AQEQLHQQIDQATTSMNDMHL 85

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 12/88 (13%), Positives = 18/88 (20%), Gaps = 1/88 (1%)

Query: 24  PPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTVMPTPPLKPPPTYP-PPVKP 82
               V P               P   +P   PA        M  PP    P+        
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 83  PTTTPPPVSPPKTAPAPQVPSPASSPMP 110
           P          +   +       + P+ 
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLV 91

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 2/103 (1%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
            +Y +  +P      +  +     P  +                 +  +P V P   ++P
Sbjct: 40  MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99

Query: 62  PTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSP 104
              +P     P      P+  P    P  +  +         P
Sbjct: 100 Q--VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYP 140

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 19/84 (22%), Positives = 23/84 (27%)

Query: 5   PKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPPTV 64
           P       AP     +      +++          P    PP    P     P   PP  
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQG 414

Query: 65  MPTPPLKPPPTYPPPVKPPTTTPP 88
            P     PPP   PP   P   PP
Sbjct: 415 YPPQGYPPPPQGAPPQGAPPAAPP 438

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 7   TPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKPP 62
           + + A   P  PV P  P   +        P++P    P     PT    PPVK P
Sbjct: 301 SNINAIGVPTKPVAPTAPTQPMYET---EKPLEPAPVAPSYENEPT----PPVKTP 349

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 2/116 (1%)

Query: 2   ATYPKTPVPAPAPPKAPVKPITPPPVVKPPTTYPPPVKPPTTTPPVVKLPTVAPAPPVKP 61
           A     P P  +   +P +      ++   T      +         ++ T    P V P
Sbjct: 332 AQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDP 391

Query: 62  PTVMPTPPLKPPPTYPPPVKPPTTTPPPVSPPKTAPAPQVPSPASSPMPIVRSNKD 117
                   +        PV+   +          A           P+  VR+  D
Sbjct: 392 TD--VAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00