Citrus Sinensis ID: 044867

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
massyrnnkkydvfvsfrgedtrdnfTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEgyassiwc
Flexible Loop (DISEMBL)
massyrnnkkydvfvsfrgedtrDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC
Low Complexity Region (SEG)
MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC
Disordered region (IsUnstruct)
**********YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIW*
Disordered Region (DISOPRED)
******N*KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC
Disordered Region (DISEMBL)
********KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC
Disordered Region (DISPRO)
*******NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYAS**WC
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
O82500	1095	Putative disease resistan	yes	no	1.0	0.073	0.543	6e-18
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.962	0.059	0.506	1e-16
Q40392	1144	TMV resistance protein N	N/A	no	0.876	0.062	0.555	1e-15
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.839	0.165	0.449	2e-10
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.839	0.192	0.405	8e-08
Q9SYC9	571	Vesicle-associated protei	no	no	0.876	0.124	0.347	5e-07
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.839	0.173	0.376	6e-06

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 52/81 (64%)

Query: 1  MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNA 60
          MASS  N+ +YDVF SFRGED R+NF SHL      + I TF DD + R   I   L  A
Sbjct: 1  MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query: 61 IQASAISVIVFSEGYASSIWC 81
          I+ S ISV++FSE YASS WC
Sbjct: 61 IRESKISVVLFSENYASSSWC 81

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 54/79 (68%), Gaps = 1/79 (1%)

Query: 3  SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ 62
          +S   +++YDVF SFRGED RD+F SHL   L R    TFIDD++ R   I   LL+AI+
Sbjct: 4  ASSSGSRRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIK 62

Query: 63 ASAISVIVFSEGYASSIWC 81
           S I++++FS+ YASS WC
Sbjct: 63 ESRIAIVIFSKNYASSTWC 81

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVI 69
          YDVF+SFRGEDTR  FTSHLY  L  + I+TF DD+ L  G  I   L  AI+ S  +++
Sbjct: 12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 70 VFSEGYASSIWC 81
          VFSE YA+S WC
Sbjct: 72 VFSENYATSRWC 83

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72
          VF++FRG+D R  F S L   L ++ I  FID+Q  RG  +  SL + I  S I++++FS
Sbjct: 24 VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 73 EGYASSIWC 81
          EGY  S WC
Sbjct: 83 EGYCESHWC 91

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72
          VF++FRG+D R+ F S L   +   NI  FID     G ++  +L   IQ S ++V++FS
Sbjct: 16 VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV-NLFVRIQESRVAVVIFS 74

Query: 73 EGYASSIWC 81
          + Y SS WC
Sbjct: 75 KDYTSSEWC 83

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 10  KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69
           +Y VF++FRG++ R++F   L   +  + I  F D+   RG  ++  L   I+ S ++V 
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVAVA 415

Query: 70  VFSEGYASSIWC 81
           +FSE Y  S WC
Sbjct: 416 IFSERYTESCWC 427

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72
          VF+ FRG D R +F S L   L   NI  FID+    G E++ +LL  I+ S +++++FS
Sbjct: 17 VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFS 75

Query: 73 EGYASSIWC 81
            +  S  C
Sbjct: 76 VDFTRSHRC 84

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.987	0.063	0.637	8e-24
255569048	1084	leucine-rich repeat-containing protein,	1.0	0.074	0.670	9e-24
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.987	0.055	0.612	2e-22
224169680	120	predicted protein [Populus trichocarpa]	0.987	0.666	0.6	3e-22
317106744	947	JHS03A10.2 [Jatropha curcas]	0.913	0.078	0.675	6e-22
451798990	1335	TMV resistance protein N-like protein 7	0.888	0.053	0.625	6e-22
224145362	155	predicted protein [Populus trichocarpa]	0.888	0.464	0.722	7e-22
451798988	1219	TMV resistance protein N-like protein 6	0.888	0.059	0.638	7e-22
359493487	1162	PREDICTED: TMV resistance protein N-like	0.888	0.061	0.638	7e-22
359493483	1274	PREDICTED: TMV resistance protein N-like	0.888	0.056	0.625	9e-22

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/80 (63%), Positives = 65/80 (81%)

Query: 2  ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAI 61
          +SS  + +KYDVF+SFRGEDTR+NFTSHLY  LCR+ I+TFIDD L RG+EI+ +LL  I
Sbjct: 4  SSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPALLKKI 63

Query: 62 QASAISVIVFSEGYASSIWC 81
          + S ISV++FS+ YASS WC
Sbjct: 64 EESRISVVIFSKNYASSPWC 83

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569048|ref|XP_002525493.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223535172|gb|EEF36851.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/82 (67%), Positives = 66/82 (80%), Gaps = 1/82 (1%)

Query: 1  MASSYRNNK-KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLN 59
          MASS  + K K+DVF+SFRG+DTRDNFTSHLY  LCR+ I+TFID+ L RG+EI+ +LL 
Sbjct: 1  MASSSNSPKRKFDVFLSFRGKDTRDNFTSHLYDALCRKKIKTFIDNGLERGEEITPALLR 60

Query: 60 AIQASAISVIVFSEGYASSIWC 81
           I+ S ISVIVFSE YASS WC
Sbjct: 61 TIEESLISVIVFSENYASSPWC 82

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 64/80 (80%)

Query: 2  ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAI 61
          +S+  +  KYDVF+SFRG+DTR+NFTSHLY  LCR+ I+TFIDD+L RG EI+ +LL  I
Sbjct: 4  SSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPALLKTI 63

Query: 62 QASAISVIVFSEGYASSIWC 81
          + S ISV++FS+ YASS WC
Sbjct: 64 EESRISVVIFSKNYASSPWC 83

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224169680|ref|XP_002339290.1| predicted protein [Populus trichocarpa] gi|222874825|gb|EEF11956.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 64/80 (80%)

Query: 2  ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAI 61
          +S+  +  KYDVF+SFRG+DTR+NFTSHLY  LCR+ I+TFID+ L RG+EI+ +LL  I
Sbjct: 4  SSAVAHKWKYDVFLSFRGQDTRNNFTSHLYDALCRKKIKTFIDNGLERGEEITPALLKTI 63

Query: 62 QASAISVIVFSEGYASSIWC 81
          + S ISV++FS+ YASS WC
Sbjct: 64 EESRISVVIFSKNYASSPWC 83

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 59/74 (79%)

Query: 8  NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAIS 67
           ++YDVF+SFRGEDTRD+FTSHLY+ LC + IQTFID+ L RG EIS SLL AI+ S IS
Sbjct: 7  QERYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESKIS 66

Query: 68 VIVFSEGYASSIWC 81
          V + SE YASS WC
Sbjct: 67 VPILSENYASSKWC 80

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 60/72 (83%)

Query: 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69
          KYDVF+SFRGEDTR +FT HL++ LC++ I TF+DDQL RG+++S +LLNAI+ S  S+I
Sbjct: 15 KYDVFLSFRGEDTRKSFTDHLHTALCQKGINTFMDDQLRRGEQVSPALLNAIEESRFSII 74

Query: 70 VFSEGYASSIWC 81
          +FS+ YASS WC
Sbjct: 75 IFSDNYASSSWC 86

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145362|ref|XP_002325614.1| predicted protein [Populus trichocarpa] gi|222862489|gb|EEE99995.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 59/72 (81%)

Query: 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69
          KYDVF+SFRGEDTR  FTSHLY+ L R+ I+TFID QL RGDEISESLL  I+ + +SVI
Sbjct: 9  KYDVFLSFRGEDTRVGFTSHLYAALDRKQIRTFIDYQLVRGDEISESLLRTIEEAKLSVI 68

Query: 70 VFSEGYASSIWC 81
          VFSE YASS WC
Sbjct: 69 VFSENYASSKWC 80

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/72 (63%), Positives = 60/72 (83%)

Query: 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69
          KYDVF+SFRGEDTR +FT HL++ LC++ I TF+DDQL RG++IS +LLNAI+ S  S+I
Sbjct: 21 KYDVFLSFRGEDTRKSFTDHLHTALCQKGINTFMDDQLRRGEQISPALLNAIEESRFSII 80

Query: 70 VFSEGYASSIWC 81
          +FS+ YASS WC
Sbjct: 81 IFSDNYASSSWC 92

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/72 (63%), Positives = 60/72 (83%)

Query: 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69
          KYDVF+SFRGEDTR +FT HL++ LC++ I TF+DDQL RG++IS +LLNAI+ S  S+I
Sbjct: 21 KYDVFLSFRGEDTRKSFTDHLHTALCQKGINTFMDDQLRRGEQISPALLNAIEESRFSII 80

Query: 70 VFSEGYASSIWC 81
          +FS+ YASS WC
Sbjct: 81 IFSDNYASSSWC 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 60/72 (83%)

Query: 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69
          KYDVF+SFRGEDTR +FT HL++ LC++ I TF+DDQL RG+++S +LLNAI+ S  S+I
Sbjct: 15 KYDVFLSFRGEDTRKSFTDHLHTALCQKGINTFMDDQLRRGEQVSPALLNAIEESRFSII 74

Query: 70 VFSEGYASSIWC 81
          +FS+ YASS WC
Sbjct: 75 IFSDNYASSSWC 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.876	0.059	0.597	2.6e-16
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	1.0	0.073	0.543	1e-15
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.876	0.226	0.569	1.3e-15
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.987	0.065	0.506	1.5e-15
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.888	0.409	0.534	1.6e-15
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	1.0	0.065	0.530	1.9e-15
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.888	0.189	0.547	2e-15
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.975	0.060	0.518	3.3e-15
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	1.0	0.070	0.530	3.6e-15
TAIR|locus:2032602	1163	AT1G72860 [Arabidopsis thalian	1.0	0.069	0.530	4.7e-15

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 43/72 (59%), Positives = 52/72 (72%)

Query:    11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLLNAIQASAISVI 69
             YDVFVSFRG D R NF SHLY +L R  I TF+DD +L RG+ IS  LLNAI+ S I ++
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    70 VFSEGYASSIWC 81
             V ++ YASS WC
Sbjct:    77 VLTKDYASSAWC 88

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 44/81 (54%), Positives = 52/81 (64%)

Query:     1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNA 60
             MASS  N+ +YDVF SFRGED R+NF SHL      + I TF DD + R   I   L  A
Sbjct:     1 MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query:    61 IQASAISVIVFSEGYASSIWC 81
             I+ S ISV++FSE YASS WC
Sbjct:    61 IRESKISVVLFSENYASSSWC 81

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/72 (56%), Positives = 50/72 (69%)

Query:    10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69
             K+DVF+SFR +DTRDNF SHL   L R+ I+TF+ D+L   DE  E  L AI+ S ISVI
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELP-ADERYEESLKAIEVSKISVI 66

Query:    70 VFSEGYASSIWC 81
             VFSE +  S WC
Sbjct:    67 VFSENFGDSRWC 78

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 41/81 (50%), Positives = 58/81 (71%)

Query:     1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNA 60
             M SS  ++ ++DVF+SFRG DTR+NFT HL   L  + I +FIDD+L RGD ++ +L + 
Sbjct:     1 MESSSPSSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFDR 59

Query:    61 IQASAISVIVFSEGYASSIWC 81
             I+ S I++IVFS  YA+S WC
Sbjct:    60 IEKSKIAIIVFSTNYANSAWC 80

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 39/73 (53%), Positives = 49/73 (67%)

Query:    10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLLNAIQASAISV 68
             KYDVF+SFRG DTR NF S LY  L R++I+TF DD +L  G   S  L + I+ S  +V
Sbjct:     8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query:    69 IVFSEGYASSIWC 81
             +V SE YA+S WC
Sbjct:    68 VVVSENYAASSWC 80

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 43/81 (53%), Positives = 54/81 (66%)

Query:     1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNA 60
             MASS   +  YDVF SF GED R +F SHL   L R++I TFID+ + R   I+  LL+A
Sbjct:     1 MASSSSRSWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAPDLLSA 60

Query:    61 IQASAISVIVFSEGYASSIWC 81
             I  S IS++VFS+ YASS WC
Sbjct:    61 INNSMISIVVFSKKYASSTWC 81

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 40/73 (54%), Positives = 49/73 (67%)

Query:    10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLLNAIQASAISV 68
             KYDVF+SFRG DTR NF S LY  L R++I+TF DD +L  G  IS  L   I+ S  +V
Sbjct:     8 KYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAV 67

Query:    69 IVFSEGYASSIWC 81
             +V SE YA+S WC
Sbjct:    68 VVVSETYAASSWC 80

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 42/81 (51%), Positives = 56/81 (69%)

Query:     1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNA 60
             +ASS   +++YDVF SFRGED RD+F SHL   L R    TFIDD++ R   I   LL+A
Sbjct:     3 IASS-SGSRRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSA 60

Query:    61 IQASAISVIVFSEGYASSIWC 81
             I+ S I++++FS+ YASS WC
Sbjct:    61 IKESRIAIVIFSKNYASSTWC 81

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 205 (77.2 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 44/83 (53%), Positives = 56/83 (67%)

Query:     1 MASSYRNNK-KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLL 58
             MASS  +++  YDVF+SFRGEDTR  FTSHLY  L  + I+TF DD+ L  G  I   L 
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60

Query:    59 NAIQASAISVIVFSEGYASSIWC 81
              AI+ S  +++VFSE YA+S WC
Sbjct:    61 KAIEESQFAIVVFSENYATSRWC 83

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.7e-15, P = 4.7e-15
 Identities = 44/83 (53%), Positives = 55/83 (66%)

Query:     1 MASSYRNNK-KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLL 58
             MASS  +   KYDVF+SFRGEDTR N  SHL+  L  + + TF DD+ L  GD ISE + 
Sbjct:     1 MASSSSSPIWKYDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEEIS 60

Query:    59 NAIQASAISVIVFSEGYASSIWC 81
              AIQ S  ++++ SE YASS WC
Sbjct:    61 RAIQNSTYALVILSENYASSSWC 83

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	81
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	1e-21
pfam01582	135	pfam01582, TIR, TIR domain	2e-20
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-19
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	2e-10
pfam13676	102	pfam13676, TIR_2, TIR domain	3e-09

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 81.6 bits (202), Expect = 1e-21
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 10 KYDVFVSFRG-EDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISV 68
          +YDVF+S+ G ED R+ F SHL   L    +  FIDD    G    E +  AI+ S I++
Sbjct: 1  EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 69 IVFSEGYASSIWC 81
          +V S  YA S WC
Sbjct: 60 VVLSPNYAESEWC 72

Length = 140

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 78.5 bits (194), Expect = 2e-20
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLLNAIQASAISVIVF 71
          VFVSF G+D RD F SHL   L  + I+  IDD     G+ I E+L  AI+ S  ++++F
Sbjct: 1  VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 72 SEGYASSIWC 81
          S  YASS WC
Sbjct: 61 SSNYASSEWC 70

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 79.1 bits (195), Expect = 5e-19
 Identities = 37/80 (46%), Positives = 47/80 (58%)

Query: 2  ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAI 61
          +SS   N  YDVF SF GED R  F SH    L R+ I  F D+++ R   +   L  AI
Sbjct: 4  SSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAI 63

Query: 62 QASAISVIVFSEGYASSIWC 81
          + S I+V+VFS+ YASS WC
Sbjct: 64 RDSRIAVVVFSKNYASSSWC 83

syringae 6; Provisional. Length = 1153

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIV 70
          DVF++ RG DT+    + LY  L R N++ F+D++ +  GD++ + + +AI+   + V V
Sbjct: 28 DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 71 FSEGYASSIWC 81
          FS  Y  S +C
Sbjct: 88 FSPRYCESYFC 98

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72
          VF+S+   D    +   L   L    I+ ++D  +  G++  + +  A++++ + +++ S
Sbjct: 1  VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 73 EGYASSIWC 81
            Y +S WC
Sbjct: 59 PAYLASPWC 67

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PLN03194	187	putative disease resistance protein; Provisional	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.78
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.76
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.7
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.94
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.57
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.56
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	98.11
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	96.54
COG4271	233	Predicted nucleotide-binding protein containing TI	95.51
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	93.56
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	92.97
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	91.46
PF03129	94	HGTP_anticodon: Anticodon binding domain; InterPro	89.98
cd00858	121	GlyRS_anticodon GlyRS Glycyl-anticodon binding dom	88.88
COG0400	207	Predicted esterase [General function prediction on	84.37
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	84.3

>PLN03194 putative disease resistance protein; Provisional

Probab=99.95  E-value=2.2e-28  Score=161.21  Aligned_cols=79  Identities=35%  Similarity=0.666  Sum_probs=76.2

Q ss_pred             CCCCCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            3 SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         3 ~~s~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      |||+...+|||||||+++|++..|+++|+.+|+++||++|+|.. +++|+.|.+.|.+||++|+++|+||||+|+.|.||
T Consensus        19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            45678999999999999999999999999999999999999998 99999999999999999999999999999999999

>PLN03210 Resistant to P

Probab=99.90  E-value=2.9e-24  Score=169.33  Aligned_cols=81  Identities=48%  Similarity=0.738  Sum_probs=77.8

Q ss_pred             CCCC--CCCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867            1 MASS--YRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASS   78 (81)
Q Consensus         1 ~~~~--s~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S   78 (81)
                      ||+|  |++.++|||||||+++|+++.|++||+.+|.++||++|.|+++++|+.+.+++.+||++|+++|+|+|++|+.|
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s   80 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS   80 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence            6776  46899999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CCC
Q 044867           79 IWC   81 (81)
Q Consensus        79 ~wC   81 (81)
                      .||
T Consensus        81 ~wc   83 (1153)
T PLN03210         81 SWC   83 (1153)
T ss_pred             hHH
Confidence            999

syringae 6; Provisional

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.78  E-value=3.9e-19  Score=110.39  Aligned_cols=71  Identities=44%  Similarity=0.764  Sum_probs=61.0

Q ss_pred             cccEEEecee-ccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867           10 KYDVFVSFRG-EDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus        10 ~~dVFISy~~-~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      +|||||||++ ++....|+.+|...|...|+.+|.|.....|.. ..+|.++|++|+++|+|+||+|+.|+||
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~-~~~i~~~i~~s~~~i~vlS~~~~~S~w~   72 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGD-LEEIDEAIEKSRIAIVVLSPNYAESEWC   72 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccch-HHHHHHHHHHCcEEEEEECcccccChhH
Confidence            5899999999 344468999999999999999999976333333 3399999999999999999999999998

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.76  E-value=6e-20  Score=115.49  Aligned_cols=69  Identities=35%  Similarity=0.687  Sum_probs=62.8

Q ss_pred             EEEeceeccCcccHHHHHHHHHhcC--CceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867           13 VFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus        13 VFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      |||||++.+.+..|+.+|.++|+++  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|.||
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc   72 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWC   72 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccch
Confidence            8999999433468999999999999  999999998 99999999999999999999999999999999998

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.70  E-value=3.7e-19  Score=106.02  Aligned_cols=67  Identities=31%  Similarity=0.638  Sum_probs=59.3

Q ss_pred             EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867           13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus        13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      |||||++.|  ..++..|...|++.|+++|+|+++.+|+.+.+.|.++|++|+.+|+++|++|.+|+||
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~   67 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWC   67 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHH
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHH
Confidence            899999999  4699999999999999999997689999999999999999999999999999999998

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.94  E-value=1.9e-09  Score=80.46  Aligned_cols=69  Identities=29%  Similarity=0.420  Sum_probs=61.3

Q ss_pred             CCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCc
Q 044867            7 NNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYAS   77 (81)
Q Consensus         7 ~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~   77 (81)
                      -.++.||||||++.- ...+++-|...|+-+|++||+|-+ +..|+ +.+.+.+.|..++.+|+|++|+.+.
T Consensus       609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLD  678 (832)
T KOG3678|consen  609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLD  678 (832)
T ss_pred             ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHH
Confidence            467899999998775 468999999999999999999999 99997 5789999999999999999998653

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.57  E-value=4.1e-08  Score=61.12  Aligned_cols=70  Identities=20%  Similarity=0.378  Sum_probs=34.5

Q ss_pred             ccEEEeceeccCcccHHHHHHHHHhcC-------CceE----------EecCC-CCCCCcchHHHHHHHHhcCeEEEEec
Q 044867           11 YDVFVSFRGEDTRDNFTSHLYSTLCRQ-------NIQT----------FIDDQ-LNRGDEISESLLNAIQASAISVIVFS   72 (81)
Q Consensus        11 ~dVFISy~~~D~~~~~~~~L~~~L~~~-------g~~v----------~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S   72 (81)
                      |+|||||.+.|.. ..+..|...+...       ++..          ..+.. ....+.+.+.|.++|+.|+++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5899999999953 3677777777652       2211          11211 22345789999999999999999999


Q ss_pred             CCCCcCCCC
Q 044867           73 EGYASSIWC   81 (81)
Q Consensus        73 ~~y~~S~wC   81 (81)
                      ++...|.|+
T Consensus        80 ~~T~~s~wV   88 (130)
T PF08937_consen   80 PNTAKSKWV   88 (130)
T ss_dssp             TT----HHH
T ss_pred             CCcccCcHH
Confidence            999999884

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.56  E-value=1.5e-07  Score=59.29  Aligned_cols=64  Identities=23%  Similarity=0.366  Sum_probs=53.4

Q ss_pred             cEEEeceeccCc-ccHHHHHHHHHhcC-CceEEecCC-CC--CCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867           12 DVFVSFRGEDTR-DNFTSHLYSTLCRQ-NIQTFIDDQ-LN--RGDEISESLLNAIQASAISVIVFSEGY   75 (81)
Q Consensus        12 dVFISy~~~D~~-~~~~~~L~~~L~~~-g~~v~~d~~-~~--~G~~~~~~i~~aI~~S~~~I~v~S~~y   75 (81)
                      .|||||+++... ...|..|...|++. |+.|.+|.- ..  +++...+=+.+.|++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            599999996543 36688999999999 999999986 53  366778888899999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=98.11  E-value=1.5e-05  Score=49.92  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             cEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867           12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEG   74 (81)
Q Consensus        12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~   74 (81)
                      .|||.|+ .|  ...+..+...|+..|+.+-.-.+ ...|..+.+.+.+.+.+++-+|++++|+
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD   61 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD   61 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence            4999998 54  36788899999988887666555 7899999999999999999999999995

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=96.54  E-value=0.014  Score=33.66  Aligned_cols=66  Identities=17%  Similarity=0.186  Sum_probs=49.3

Q ss_pred             cEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867           12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASS   78 (81)
Q Consensus        12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S   78 (81)
                      .||||=.-.|-. ..-..|.+.+.+.|..+..-+. ...+....+.+.+.|++|++.|.++-..|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            489997666643 4566777788887876555444 34467778899999999999999999888643

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=95.51  E-value=0.066  Score=36.41  Aligned_cols=60  Identities=18%  Similarity=0.225  Sum_probs=48.0

Q ss_pred             cEEEeceeccCcccHHHHHHHHHh-cCC-ceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867           12 DVFVSFRGEDTRDNFTSHLYSTLC-RQN-IQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY   75 (81)
Q Consensus        12 dVFISy~~~D~~~~~~~~L~~~L~-~~g-~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y   75 (81)
                      .|||-|+++-    .+.....+|. +-. ..+|.|.-...|+.+.+.+.+-|.+.+-.|++.+|+-
T Consensus        84 kvFvv~ghd~----iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDD  145 (233)
T COG4271          84 KVFVVSGHDA----IARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDD  145 (233)
T ss_pred             eEEEEeccHH----HHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcc
Confidence            8999997664    4555555655 333 3578887788999999999999999999999999974

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=93.56  E-value=0.25  Score=29.56  Aligned_cols=51  Identities=18%  Similarity=0.185  Sum_probs=38.4

Q ss_pred             ccHHHHHHHHHhcCCceEEecCC--CC---CC----CcchHHHHHHHHhcCeEEEEecCC
Q 044867           24 DNFTSHLYSTLCRQNIQTFIDDQ--LN---RG----DEISESLLNAIQASAISVIVFSEG   74 (81)
Q Consensus        24 ~~~~~~L~~~L~~~g~~v~~d~~--~~---~G----~~~~~~i~~aI~~S~~~I~v~S~~   74 (81)
                      ..+..++.+.|+++|+.++...+  ..   .+    +.+.+.-.++|++|+++|+++.+.
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~   72 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGF   72 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSS
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCC
Confidence            46889999999999999888764  21   12    234455567899999999999863

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=92.97  E-value=0.74  Score=25.79  Aligned_cols=60  Identities=12%  Similarity=0.190  Sum_probs=38.6

Q ss_pred             cccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867           10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE   73 (81)
Q Consensus        10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~   73 (81)
                      +++|+|.....+. ...+..+...|+..|+++-+|..   +.++...+..|-+.---.++++.+
T Consensus         1 p~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~   60 (91)
T cd00860           1 PVQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGD   60 (91)
T ss_pred             CeEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECc
Confidence            3677777654433 35678899999999999988742   456666776665433333444443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=91.46  E-value=1.1  Score=25.12  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=39.2

Q ss_pred             ccEEEeceec---cCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867           11 YDVFVSFRGE---DTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG   74 (81)
Q Consensus        11 ~dVFISy~~~---D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~   74 (81)
                      ++|+|-....   .. ...+.++...|++.|+.+-+|.   .+..+...+..|-..---.++++.++
T Consensus         2 ~~v~ii~~~~~~~~~-~~~a~~~~~~Lr~~g~~v~~~~---~~~~~~k~~~~a~~~g~~~~iiig~~   64 (94)
T cd00738           2 IDVAIVPLTDPRVEA-REYAQKLLNALLANGIRVLYDD---RERKIGKKFREADLRGVPFAVVVGED   64 (94)
T ss_pred             eEEEEEECCCCcHHH-HHHHHHHHHHHHHCCCEEEecC---CCcCHhHHHHHHHhCCCCEEEEECCC
Confidence            5666665333   22 3567788899999999998874   34566667766655444456666654

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis

Probab=89.98  E-value=1.6  Score=24.78  Aligned_cols=44  Identities=16%  Similarity=0.287  Sum_probs=32.9

Q ss_pred             ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867           24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV   70 (81)
Q Consensus        24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v   70 (81)
                      ..++.+|...|+++|+++.+|.   .+.++...+.+|-. +....|+|
T Consensus        15 ~~~a~~l~~~L~~~gi~v~~d~---~~~~~~k~~~~a~~~g~p~~iii   59 (94)
T PF03129_consen   15 IEYAQELANKLRKAGIRVELDD---SDKSLGKQIKYADKLGIPFIIII   59 (94)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEES---SSSTHHHHHHHHHHTTESEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEC---CCCchhHHHHHHhhcCCeEEEEE
Confidence            4678999999999999999995   55666677777764 45555544

This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....

>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain

Probab=88.88  E-value=2.2  Score=25.84  Aligned_cols=62  Identities=10%  Similarity=-0.003  Sum_probs=42.2

Q ss_pred             CCcccEEEecee--ccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867            8 NKKYDVFVSFRG--EDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG   74 (81)
Q Consensus         8 ~~~~dVFISy~~--~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~   74 (81)
                      -..++|+|-...  .+. ...+..|...|+..|+++-+|.  .  .++...+..|-+.---.++++.++
T Consensus        24 lap~~v~Ii~~~~~~~~-~~~a~~la~~LR~~gi~v~~d~--~--~sl~kqlk~A~k~g~~~~iiiG~~   87 (121)
T cd00858          24 LAPIKVAVLPLVKRDEL-VEIAKEISEELRELGFSVKYDD--S--GSIGRRYARQDEIGTPFCVTVDFD   87 (121)
T ss_pred             cCCcEEEEEecCCcHHH-HHHHHHHHHHHHHCCCEEEEeC--C--CCHHHHHHHhHhcCCCEEEEECcC
Confidence            346788887765  222 3567788999999999999984  2  567777777765444455555544

GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>COG0400 Predicted esterase [General function prediction only]

Probab=84.37  E-value=3.6  Score=27.66  Aligned_cols=57  Identities=18%  Similarity=0.135  Sum_probs=44.6

Q ss_pred             CCCCcccEEEeceeccC--cccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh
Q 044867            6 RNNKKYDVFVSFRGEDT--RDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA   63 (81)
Q Consensus         6 ~~~~~~dVFISy~~~D~--~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~   63 (81)
                      +.....-|||+|-..|.  ......+|.+.|+..|.+|.... ...|-.+.++-.+++++
T Consensus       142 ~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~-~~~GH~i~~e~~~~~~~  200 (207)
T COG0400         142 PDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRW-HEGGHEIPPEELEAARS  200 (207)
T ss_pred             cccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEE-ecCCCcCCHHHHHHHHH
Confidence            35778899999988885  35678999999999999988775 45677777776666654

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=84.30  E-value=2.1  Score=30.47  Aligned_cols=73  Identities=19%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             CCCCcccEEEeceeccCcccHHHHHHHHHhcC--CceEEecCC----CCCCCcchHHHHHHH-HhcCeEEEEecCCCCcC
Q 044867            6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQ----LNRGDEISESLLNAI-QASAISVIVFSEGYASS   78 (81)
Q Consensus         6 ~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~----~~~G~~~~~~i~~aI-~~S~~~I~v~S~~y~~S   78 (81)
                      ...+.||+=+||.++-  ..+++.....|+.+  .+..|.|-.    +.+|+ +.+.+...- +.|++.+|.+..+|...
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEe
Confidence            3468899999998886  47898988889844  355777743    34443 333333322 35888999999999999


Q ss_pred             CCC
Q 044867           79 IWC   81 (81)
Q Consensus        79 ~wC   81 (81)
                      .||
T Consensus       250 ~~c  252 (329)
T COG4916         250 STC  252 (329)
T ss_pred             eee
Confidence            998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		4e-16
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-15

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLLNAIQASAISV 68
          KYDVF+SFRG DTR NF S LY  L R++I+TF DD +L  G   S  L + I+ S  +V
Sbjct: 8  KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 69 IVFSEGYASSIWC 81
          +V SE YA+S WC
Sbjct: 68 VVVSENYAASSWC 80

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 10  KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI-DDQLNRGDEISESLLNAIQASAISV 68
           +Y+VF+SFRG DTR+ FT  LY +L R  I TF  DD+L +G EI  +LL AI  S I V
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 69  IVFSEGYASSIWC 81
            + S GYA S WC
Sbjct: 95  PIISSGYADSKWC 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-43
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-42
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	8e-39
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	2e-13
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	2e-08
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	4e-08
2js7_A	160	Myeloid differentiation primary response protein M	2e-05
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	2e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  138 bits (349), Expect = 1e-43
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 1  MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLN 59
          M+S      KYDVF+SFRG DTR NF S LY  L R++I+TF DD+ L  G   S  L +
Sbjct: 1  MSSH--TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKS 58

Query: 60 AIQASAISVIVFSEGYASSIWC 81
           I+ S  +V+V SE YA+S WC
Sbjct: 59 PIEVSRFAVVVVSENYAASSWC 80

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  135 bits (342), Expect = 2e-42
 Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 3   SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAI 61
           S    + +Y+VF+SFRG DTR+ FT  LY +L R  I TF DD  L +G EI  +LL AI
Sbjct: 28  SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87

Query: 62  QASAISVIVFSEGYASSIWC 81
             S I V + S GYA S WC
Sbjct: 88  DQSKIYVPIISSGYADSKWC 107

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  125 bits (315), Expect = 8e-39
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 1  MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLN 59
            +   +   +D+F+S   ED + +F   L  TL     + + DD  L  GD +  S+  
Sbjct: 11 TNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDK 69

Query: 60 AIQASAISVIVFSEGYASSIWC 81
           + +S   ++V S  +    W 
Sbjct: 70 GLGSSRFGIVVLSTHFFKKEWP 91

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 60.1 bits (146), Expect = 2e-13
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 3  SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLLN 59
           S R +K YDV V    ED        L S L     +++ F+  +    G  I   L  
Sbjct: 3  GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 60 AIQASAISVIVFSEGYASSIWC 81
          A+ +S   V++ + G+    WC
Sbjct: 61 ALSSSHCRVLLITPGFLQDPWC 82

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 47.2 bits (112), Expect = 2e-08
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 7   NNKKYDVFVSFRGEDTRDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLLNAIQA 63
            N ++  F+S+   D      + L   L     +I   + +   + G  ISE++++ I+ 
Sbjct: 32  RNVRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEK 90

Query: 64  SAISVIVFSEGYASSIWC 81
           S  S+ V S  +  + WC
Sbjct: 91  SYKSIFVLSPNFVQNEWC 108

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 46.6 bits (110), Expect = 4e-08
 Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 13/86 (15%)

Query: 9  KKYDVFVSFRGEDTR---------DNFTSHLYSTL--CRQNIQTFIDD-QLNRGDEISES 56
          K YD ++S+   D           + F   +   +       + FI D  L       E 
Sbjct: 1  KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIED 60

Query: 57 LLNAIQASAISVIVFSEGYA-SSIWC 81
          +   +  S   +IV +  Y     W 
Sbjct: 61 VARCVDQSKRLIIVMTPNYVVRRGWS 86

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 6  RNNKKYDVFVSFRGEDTRDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLLNAIQ 62
             +++D F+ +   D +  F   +   L      ++  + D+ +  G  +       I+
Sbjct: 12 HMPERFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIE 69

Query: 63 A-SAISVIVFSEGYASSIWC 81
                V+V S+ Y  S  C
Sbjct: 70 KRCRRMVVVVSDDYLQSKEC 89

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 7  NNKKYDVFVSFRGEDTRDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLLNAIQA 63
           N  YD FVS+   D      + +   L       +  +  +    G  I ++++++I+ 
Sbjct: 2  RNIXYDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEK 60

Query: 64 SAISVIVFSEGYASSIW 80
          S  +V V SE +  S W
Sbjct: 61 SHKTVFVLSENFVKSEW 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.95
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.95
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.91
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.88
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.87
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.87
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.86
2js7_A	160	Myeloid differentiation primary response protein M	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	97.96
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	95.33
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	94.23
2yvq_A	143	Carbamoyl-phosphate synthase; conserved hypothetic	87.95
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	87.57
1v95_A	130	Nuclear receptor coactivator 5; coactivator indepe	86.79
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	82.97
2jug_A	78	TUBC protein; docking domain, dimer, nonribosomal	80.39

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.95  E-value=9.5e-30  Score=165.98  Aligned_cols=78  Identities=51%  Similarity=0.869  Sum_probs=58.8

Q ss_pred             CCCCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            4 SYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         4 ~s~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      ||+.+++|||||||+++|++..|+++|+.+|+++||++|+|++ +++|+.|.++|.+||++|+++|+|+|+||++|.||
T Consensus         2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WC   80 (176)
T 3jrn_A            2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWC   80 (176)
T ss_dssp             -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHH
T ss_pred             CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhH
Confidence            3457899999999999999889999999999999999999987 99999999999999999999999999999999999

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.95  E-value=3.4e-29  Score=166.42  Aligned_cols=76  Identities=51%  Similarity=0.854  Sum_probs=71.7

Q ss_pred             CCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         6 ~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      ++.++|||||||+++|++..|+.+|+.+|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||+.|.||
T Consensus        31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WC  107 (204)
T 3ozi_A           31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC  107 (204)
T ss_dssp             ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHH
T ss_pred             CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHH
Confidence            57899999999999999888999999999999999999987 99999999999999999999999999999999999

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.91  E-value=9.2e-26  Score=143.34  Aligned_cols=75  Identities=25%  Similarity=0.435  Sum_probs=70.5

Q ss_pred             CCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         6 ~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      ++.++|||||||+++| +..|+.+|..+|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|.||
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc   91 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWP   91 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCC
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHH
Confidence            3468999999999999 457999999999999999999998 99999999999999999999999999999999999

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.88  E-value=2.6e-24  Score=136.38  Aligned_cols=73  Identities=25%  Similarity=0.478  Sum_probs=69.0

Q ss_pred             CCCcccEEEeceeccCcccHHHH-HHHHHhcC--CceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            7 NNKKYDVFVSFRGEDTRDNFTSH-LYSTLCRQ--NIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         7 ~~~~~dVFISy~~~D~~~~~~~~-L~~~L~~~--g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      .++.|||||||+++|.  .|+.+ |..+|++.  |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc   78 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWX   78 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchH
Confidence            4689999999999995  79996 99999976  999999998 99999999999999999999999999999999999

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.87  E-value=1.2e-23  Score=136.95  Aligned_cols=75  Identities=24%  Similarity=0.538  Sum_probs=69.5

Q ss_pred             CCCCCcccEEEeceeccCcccHHHH-HHHHHhc--CCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCC
Q 044867            5 YRNNKKYDVFVSFRGEDTRDNFTSH-LYSTLCR--QNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIW   80 (81)
Q Consensus         5 s~~~~~~dVFISy~~~D~~~~~~~~-L~~~L~~--~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~w   80 (81)
                      ...++.|||||||+++|.  .|+.. |.++|++  +|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            357889999999999994  79975 9999998  8999999998 9999999999999999999999999999999999


Q ss_pred             C
Q 044867           81 C   81 (81)
Q Consensus        81 C   81 (81)
                      |
T Consensus       108 c  108 (178)
T 2j67_A          108 C  108 (178)
T ss_dssp             G
T ss_pred             H
Confidence            9

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.87  E-value=9.7e-25  Score=138.26  Aligned_cols=75  Identities=28%  Similarity=0.461  Sum_probs=56.3

Q ss_pred             CCCCCcccEEEeceeccCcccHHHHHHHHHhc--CCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            5 YRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCR--QNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         5 s~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~--~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      +...+.|||||||+++|.  .|+.+|..+|++  .|+++|++++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            457889999999999995  589999999998  5999999998 99999999999999999999999999999999998

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.86  E-value=4.6e-23  Score=132.05  Aligned_cols=73  Identities=23%  Similarity=0.432  Sum_probs=66.1

Q ss_pred             CcccEEEeceeccC---------cccHHHHHHH-HHh-cCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867            9 KKYDVFVSFRGEDT---------RDNFTSHLYS-TLC-RQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYA   76 (81)
Q Consensus         9 ~~~dVFISy~~~D~---------~~~~~~~L~~-~L~-~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~   76 (81)
                      +.|||||||+++|.         ++.|+.+|.. .|+ +.|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            57999999999996         2468888665 699 79999999998 999999999999999999999999999997


Q ss_pred             -cCCCC
Q 044867           77 -SSIWC   81 (81)
Q Consensus        77 -~S~wC   81 (81)
                       .|.||
T Consensus        81 ~~S~wc   86 (159)
T 1t3g_A           81 VRRGWS   86 (159)
T ss_dssp             HTTTTH
T ss_pred             hcChHH
Confidence             99999

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.86  E-value=1.5e-23  Score=134.42  Aligned_cols=74  Identities=19%  Similarity=0.339  Sum_probs=69.1

Q ss_pred             CCCCcccEEEeceeccCcccHHHHHHHHHhcC--CceEEecCC-CCCCCcchHHHHHHHH-hcCeEEEEecCCCCcCCCC
Q 044867            6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQ-LNRGDEISESLLNAIQ-ASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         6 ~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~-~~~G~~~~~~i~~aI~-~S~~~I~v~S~~y~~S~wC   81 (81)
                      +.++.|||||||+++|  ..|+.+|..+|+++  |+++|+|++ +.+|+.+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus        12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc   89 (160)
T 2js7_A           12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC   89 (160)
T ss_dssp             CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred             CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence            4578999999999999  57999999999974  699999998 9999999999999999 7999999999999999998

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=1.2e-18  Score=131.66  Aligned_cols=74  Identities=20%  Similarity=0.402  Sum_probs=68.3

Q ss_pred             CCCCcccEEEeceeccCcccHH-HHHHHHHhc-----CCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867            6 RNNKKYDVFVSFRGEDTRDNFT-SHLYSTLCR-----QNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASS   78 (81)
Q Consensus         6 ~~~~~~dVFISy~~~D~~~~~~-~~L~~~L~~-----~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S   78 (81)
                      ...+.|||||||+++|.  .|| ..|.+.|+.     +|+++|++++ +.||+.+.++|.++|++|+++|+|+|++|++|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            35789999999999995  566 779999984     5899999999 99999999999999999999999999999999


Q ss_pred             CCC
Q 044867           79 IWC   81 (81)
Q Consensus        79 ~wC   81 (81)
                      .||
T Consensus       744 ~wc  746 (844)
T 3j0a_A          744 GWC  746 (844)
T ss_dssp             TST
T ss_pred             hHH
Confidence            999

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=97.96  E-value=1.1e-06  Score=53.05  Aligned_cols=55  Identities=2%  Similarity=-0.016  Sum_probs=42.6

Q ss_pred             CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      ...|++||||..+| .   ...|...|.+.|+. |.|              +.|+.|+++|++.++...+|+||
T Consensus         2 ~~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv   56 (111)
T 1eiw_A            2 TAEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEI   56 (111)
T ss_dssp             CCCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHH
T ss_pred             CceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHH
Confidence            45789999999998 2   56677777655664 333              56788999999999999999886

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=95.33  E-value=0.025  Score=36.89  Aligned_cols=69  Identities=16%  Similarity=0.095  Sum_probs=47.1

Q ss_pred             cccEEEec--------------eeccCcccHHHHHHHHHhcCCceEEecCC-C----C---C-CCcchHHHHHHHHhcCe
Q 044867           10 KYDVFVSF--------------RGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-L----N---R-GDEISESLLNAIQASAI   66 (81)
Q Consensus        10 ~~dVFISy--------------~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~----~---~-G~~~~~~i~~aI~~S~~   66 (81)
                      +--+||+|              ..+|  ......|+.--....+-.|.|.+ .    .   . -+.|.+.|.+.|..|+.
T Consensus         5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            34578888              3444  34555555544433444567753 2    1   2 34688999999999999


Q ss_pred             EEEEecCCCCcCCC
Q 044867           67 SVIVFSEGYASSIW   80 (81)
Q Consensus        67 ~I~v~S~~y~~S~w   80 (81)
                      +|+++|++...|.|
T Consensus        83 vIllIs~~T~~s~~   96 (189)
T 3hyn_A           83 IILFLSSITANSRA   96 (189)
T ss_dssp             EEEECCTTCCCCHH
T ss_pred             EEEEEecCccccch
Confidence            99999999998876

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=94.23  E-value=0.083  Score=33.30  Aligned_cols=49  Identities=12%  Similarity=0.215  Sum_probs=37.6

Q ss_pred             cHHHHHHHHHhcCCceEEecCC-C-CCCCcchHHHHHHHHhcCeEEEEecC
Q 044867           25 NFTSHLYSTLCRQNIQTFIDDQ-L-NRGDEISESLLNAIQASAISVIVFSE   73 (81)
Q Consensus        25 ~~~~~L~~~L~~~g~~v~~d~~-~-~~G~~~~~~i~~aI~~S~~~I~v~S~   73 (81)
                      .+..++...|+++|+.++.-.+ - ..++.+.+.=.++|++|+++|++++|
T Consensus        27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldp   77 (161)
T 2f62_A           27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSP   77 (161)
T ss_dssp             HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCC
T ss_pred             HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecC
Confidence            6889999999999999888654 2 12233444447899999999999985

>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}

Probab=87.95  E-value=1.8  Score=26.26  Aligned_cols=61  Identities=8%  Similarity=0.120  Sum_probs=39.8

Q ss_pred             EEEeceeccCcccHHHHHHHHHhcCCceEEec--------C-----C-CC---CC-C-cchHHHHHHHHhcCeEEEEecC
Q 044867           13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFID--------D-----Q-LN---RG-D-EISESLLNAIQASAISVIVFSE   73 (81)
Q Consensus        13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d--------~-----~-~~---~G-~-~~~~~i~~aI~~S~~~I~v~S~   73 (81)
                      ||||....|.  .-+-.+...|.+.|++++--        +     + +.   -| + .-.++|.+.|++=.+-+||.+|
T Consensus        27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~  104 (143)
T 2yvq_A           27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP  104 (143)
T ss_dssp             EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred             EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence            9999988774  34456777788888876611        1     1 11   12 1 0015788999999999999988


Q ss_pred             CC
Q 044867           74 GY   75 (81)
Q Consensus        74 ~y   75 (81)
                      +-
T Consensus       105 ~~  106 (143)
T 2yvq_A          105 NN  106 (143)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=87.57  E-value=2  Score=26.61  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=42.2

Q ss_pred             CCCCCCCCCcccEEEeceec-cCc-ccHHHHHHHHHhcCCceEEecCCCCC-----CC-------cchHHHHHHHHhcCe
Q 044867            1 MASSYRNNKKYDVFVSFRGE-DTR-DNFTSHLYSTLCRQNIQTFIDDQLNR-----GD-------EISESLLNAIQASAI   66 (81)
Q Consensus         1 ~~~~s~~~~~~dVFISy~~~-D~~-~~~~~~L~~~L~~~g~~v~~d~~~~~-----G~-------~~~~~i~~aI~~S~~   66 (81)
                      ||.++- +....|||+=.-. +.. .....++...|+++| .|+.+....+     |.       .+...=.+.|++|++
T Consensus         3 ~~~~~~-~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~   80 (165)
T 2khz_A            3 MAASGE-QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADV   80 (165)
T ss_dssp             CCCCSS-CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSE
T ss_pred             cccCCC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCE
Confidence            555442 3345699983322 111 125688999999999 8765433222     21       122333578999999


Q ss_pred             EEEEec
Q 044867           67 SVIVFS   72 (81)
Q Consensus        67 ~I~v~S   72 (81)
                      +|+++.
T Consensus        81 vva~~~   86 (165)
T 2khz_A           81 VVAEVT   86 (165)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999986

>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1

Probab=86.79  E-value=3.7  Score=24.95  Aligned_cols=63  Identities=10%  Similarity=0.154  Sum_probs=42.4

Q ss_pred             CCCCCcccE-EEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867            5 YRNNKKYDV-FVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV   70 (81)
Q Consensus         5 s~~~~~~dV-FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v   70 (81)
                      ++..++.+| -|.-+.+.  ..++..+...|+..|+++=+|. ..+++.+...|.++-. +....|+|
T Consensus         3 ~~~~~P~Qv~IlpVs~~~--~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV   67 (130)
T 1v95_A            3 SGSSGPVDCSVIVVNKQT--KDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI   67 (130)
T ss_dssp             CCCCCCCTEEEEESSSGG--GHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCCCCeEEEEEeCcch--HHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence            344555555 33343332  5799999999999999998874 1227888888877653 46666555

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=82.97  E-value=4.2  Score=25.31  Aligned_cols=60  Identities=23%  Similarity=0.372  Sum_probs=37.0

Q ss_pred             cEEEe--ceeccCcccHHHHHHHHHhcCCceEEecCCCC-----CCCc-------chHHHHHHHHhcCeEEEEec
Q 044867           12 DVFVS--FRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLN-----RGDE-------ISESLLNAIQASAISVIVFS   72 (81)
Q Consensus        12 dVFIS--y~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~-----~G~~-------~~~~i~~aI~~S~~~I~v~S   72 (81)
                      .||++  +.+.....++..++.+.|++.| .|+-..--.     .|+.       +.+.=.+.|++|+++|++++
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~   77 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT   77 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC
Confidence            46665  3232222367899999999999 664321111     2221       45556678999999999987

>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}

Probab=80.39  E-value=1.4  Score=24.09  Aligned_cols=37  Identities=8%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcCCceEEecCC-CC---CCCcchHHHHHHHHh
Q 044867           27 TSHLYSTLCRQNIQTFIDDQ-LN---RGDEISESLLNAIQA   63 (81)
Q Consensus        27 ~~~L~~~L~~~g~~v~~d~~-~~---~G~~~~~~i~~aI~~   63 (81)
                      +..|...|+++|+.+|.|.+ +.   |-..+.+++...+.+
T Consensus         7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~   47 (78)
T 2jug_A            7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG   47 (78)
T ss_dssp             HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence            34677889999999999987 42   334567777766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-18
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	5e-15

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 2e-18
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 8  NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAI 66
          N ++  F+S+ G D+     + L   L ++ +Q  + ++    G  I E+++  I+ S  
Sbjct: 10 NLQFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYK 68

Query: 67 SVIVFSEGYASSIWC 81
          S+ V S  +  S WC
Sbjct: 69 SIFVLSPNFVQSEWC 83

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 5e-15
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 8  NKKYDVFVSFRGEDTRDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLLNAIQAS 64
          N  YD FVS+   D      + +   L       +  +  +    G  I ++++++I+ S
Sbjct: 3  NICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKS 61

Query: 65 AISVIVFSEGYASSIWC 81
            +V V SE +  S WC
Sbjct: 62 HKTVFVLSENFVKSEWC 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.87
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.85
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	95.58
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	94.1
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.94
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	90.17
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	89.92
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	88.44
d1nyra1	113	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	86.89
d1atia1	111	Glycyl-tRNA synthetase (GlyRS), C-terminal domain	85.15
d1h4vb1	96	Histidyl-tRNA synthetase (HisRS), C-terminal domai	83.72
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	82.88
d1a9xa2	138	Carbamoyl phosphate synthetase, large subunit allo	82.58
d1nj1a1	127	Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me	81.31

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-23  Score=133.04  Aligned_cols=74  Identities=26%  Similarity=0.598  Sum_probs=69.5

Q ss_pred             CCCCcccEEEeceeccCcccHH-HHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            6 RNNKKYDVFVSFRGEDTRDNFT-SHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         6 ~~~~~~dVFISy~~~D~~~~~~-~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      ..+++|||||||+++|.  .|+ ..|.+.|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.||
T Consensus         8 ~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~   83 (161)
T d1fyva_           8 QRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWC   83 (161)
T ss_dssp             SSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSH
T ss_pred             CCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHH
Confidence            46889999999999994  566 5699999999999999998 99999999999999999999999999999999998

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.8e-23  Score=129.08  Aligned_cols=74  Identities=26%  Similarity=0.504  Sum_probs=67.6

Q ss_pred             CCCCcccEEEeceeccCcccHH-HHHHHHHhc--CCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867            6 RNNKKYDVFVSFRGEDTRDNFT-SHLYSTLCR--QNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC   81 (81)
Q Consensus         6 ~~~~~~dVFISy~~~D~~~~~~-~~L~~~L~~--~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC   81 (81)
                      +.++.|||||||+++|  ..++ ..|.+.|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus         1 ~~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            4689999999999999  4566 468999976  4899999998 99999999999999999999999999999999998

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.58  E-value=0.036  Score=30.28  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=44.3

Q ss_pred             CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEEEE
Q 044867            9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISVIV   70 (81)
Q Consensus         9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I~v   70 (81)
                      ...+|||..-++.. ...+..|...|+++|+++-+|.   .+.++...+..|-.. .+.+|+|
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iii   60 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIF   60 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEE
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCcHHHHHHHHHhcCCCeEEec
Confidence            46789999877765 4788999999999999999984   456777788877764 4444444

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.10  E-value=0.049  Score=32.56  Aligned_cols=50  Identities=12%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             ccHHHHHHHHHhcCCceEEecCC--CCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867           24 DNFTSHLYSTLCRQNIQTFIDDQ--LNRGDEISESLLNAIQASAISVIVFSE   73 (81)
Q Consensus        24 ~~~~~~L~~~L~~~g~~v~~d~~--~~~G~~~~~~i~~aI~~S~~~I~v~S~   73 (81)
                      ..+.+++...|+++|+.++.-.+  ......|.+.-.+.|++|+++|++++|
T Consensus        18 ~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~   69 (152)
T d2f62a1          18 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSP   69 (152)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCC
T ss_pred             HHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccc
Confidence            46788999999999999987544  333344677777889999999999974

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.94  E-value=0.23  Score=26.60  Aligned_cols=59  Identities=22%  Similarity=0.296  Sum_probs=41.9

Q ss_pred             CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEe
Q 044867            9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVF   71 (81)
Q Consensus         9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~   71 (81)
                      ...||||.--+.+. ...+..|...|++.|+++-+|.   .+.++...+..|=+.---.++|+
T Consensus         3 ~~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iii   61 (95)
T d1qe0a1           3 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDY---LQRKIKGQMKQADRLGAKFTIVI   61 (95)
T ss_dssp             CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECC---SCCCHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecC---CCCCHHHHHHHHHhcCCCEEEEE
Confidence            45689887655543 4688899999999999999884   45567778777776433344443

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.17  E-value=0.49  Score=25.95  Aligned_cols=60  Identities=13%  Similarity=0.179  Sum_probs=39.3

Q ss_pred             ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867           11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG   74 (81)
Q Consensus        11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~   74 (81)
                      +.|.|---+++ ...++..|...|+..|+++-+|.   .+..+...+.+|-..---.++|+-++
T Consensus         8 ~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~~ki~~a~~~g~p~~iiiG~~   67 (110)
T d1qf6a1           8 VQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADL---RNEKIGFKIREHTLRRVPYMLVCGDK   67 (110)
T ss_dssp             SCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEEC---CSSCHHHHHHHHHHTTCSEEEEECTT
T ss_pred             ceEEEEeccHH-HHHHHHHHHHHHHHhhccccccC---CccchhHHHHHHHHcCCCEEEEECch
Confidence            45655422222 24689999999999999999985   35566777777766444445555444

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.92  E-value=0.68  Score=27.36  Aligned_cols=66  Identities=9%  Similarity=0.204  Sum_probs=41.1

Q ss_pred             cccEEEe---ceeccCcccHHHHHHHHHhcCC--ceEEecCC--C--------CCCC--------cchHHHHHHHHhcCe
Q 044867           10 KYDVFVS---FRGEDTRDNFTSHLYSTLCRQN--IQTFIDDQ--L--------NRGD--------EISESLLNAIQASAI   66 (81)
Q Consensus        10 ~~dVFIS---y~~~D~~~~~~~~L~~~L~~~g--~~v~~d~~--~--------~~G~--------~~~~~i~~aI~~S~~   66 (81)
                      +..|||+   |+..+  ..++.++.++|+++|  +.+|.-.+  .        +-|.        .+.+.=.++|++|++
T Consensus         7 ~~kIYLAgP~F~~~~--~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~   84 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATC   84 (167)
T ss_dssp             CEEEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSE
T ss_pred             CceEEEECCCCCHHH--HHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence            4567776   33333  468899999999988  56664321  1        0011        123344467899999


Q ss_pred             EEEEecCCCCc
Q 044867           67 SVIVFSEGYAS   77 (81)
Q Consensus        67 ~I~v~S~~y~~   77 (81)
                      +|+++......
T Consensus        85 vIA~ldg~~~D   95 (167)
T d1s2da_          85 GVFLYDMDQLD   95 (167)
T ss_dssp             EEEEEESSSCC
T ss_pred             EEEEeCCCCCC
Confidence            99999765543

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.62  Score=24.95  Aligned_cols=57  Identities=16%  Similarity=0.330  Sum_probs=41.1

Q ss_pred             cccEEEeceeccCcccHHHHHHHHHhcC--CceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867           10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV   70 (81)
Q Consensus        10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v   70 (81)
                      ..||||-.-+.+. ...+..|...|++.  |+++-+|.   .+.++...+..|-+ +++.+|+|
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~---~~~~l~kq~k~A~~~~~~~~iii   62 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNH---GGGNFKKQFARADKWGARVAVVL   62 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECC---SCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeC---CCCCHHHHHHHHHHhCCChhhhc
Confidence            5689888766554 46788899999876  99999884   45677888888776 45555443

>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.89  E-value=0.83  Score=25.06  Aligned_cols=43  Identities=16%  Similarity=0.305  Sum_probs=29.5

Q ss_pred             ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEEE
Q 044867           24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISVI   69 (81)
Q Consensus        24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I~   69 (81)
                      ..++..|...|++.||++-+|.+   +..+...+.+|-.. ....|+
T Consensus        27 ~~~a~~l~~~Lr~~gi~v~~D~~---~~~~g~k~~~a~~~g~p~~ii   70 (113)
T d1nyra1          27 YDYARQLQDELKSQGVRVSIDDR---NEKMGYKIREAQMQKIPYQIV   70 (113)
T ss_dssp             HHHHHHHHHHHHTTTCCEEECCS---SCCHHHHHHHHHHHTCSEEEE
T ss_pred             hhhHHHHHHHhhhhccceeeccc---ccccchHHHHHHHhCceEEEE
Confidence            35789999999999999999964   34455555555443 444333

>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.15  E-value=0.089  Score=29.45  Aligned_cols=33  Identities=12%  Similarity=0.199  Sum_probs=26.8

Q ss_pred             ccHHHHHHHHHhcCCceEEecCC-CCCCCcchHH
Q 044867           24 DNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISES   56 (81)
Q Consensus        24 ~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~   56 (81)
                      ..++.+|+..|+..|+++.+|.+ ..+|..+.+.
T Consensus        20 ~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~~   53 (111)
T d1atia1          20 TEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRH   53 (111)
T ss_dssp             HHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHHH
T ss_pred             HHHHHHHHhhhccccceeEeecCCCCHHHHHHHH
Confidence            47889999999999999999986 6667665543

>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.72  E-value=1.9  Score=22.72  Aligned_cols=57  Identities=14%  Similarity=0.076  Sum_probs=39.8

Q ss_pred             CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867            9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV   70 (81)
Q Consensus         9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v   70 (81)
                      ...||||---+.+. ...+..|...|+ .|+++-+|-   .+.++...+..|-+ +++.+|+|
T Consensus         2 ~~pdv~iv~~~~~~-~~~a~~i~~~LR-~~~~~~~~~---~~~~l~kq~k~A~~~~~~~~iii   59 (96)
T d1h4vb1           2 KGPDLYLIPLTEEA-VAEAFYLAEALR-PRLRAEYAL---APRKPAKGLEEALKRGAAFAGFL   59 (96)
T ss_dssp             CCCSEEEEESSHHH-HHHHHHHHHHHT-TTSCEEECS---SCCCHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEEEcCHHH-HHHHHHHHHHHH-cCceEEEEC---CCCCHHHHHHHHHHcCCCEEEEe
Confidence            45688887755543 467778889996 589888773   45678888888775 45555554

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.88  E-value=0.51  Score=26.02  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=33.9

Q ss_pred             ccCcccHHHHHHHHHhcCCceEEecC-----C-CCCCCcchHHHHHHHHhcCeEE
Q 044867           20 EDTRDNFTSHLYSTLCRQNIQTFIDD-----Q-LNRGDEISESLLNAIQASAISV   68 (81)
Q Consensus        20 ~D~~~~~~~~L~~~L~~~g~~v~~d~-----~-~~~G~~~~~~i~~aI~~S~~~I   68 (81)
                      .|.|+.-+-.|.+.|.+.|.++..-+     . ...+..+...+.++++.|++.|
T Consensus        30 dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII   84 (108)
T d1dlja3          30 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIV   84 (108)
T ss_dssp             SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEE
T ss_pred             cchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEE
Confidence            45667778899999999998764432     2 2233334567899999999543

>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Methylglyoxal synthase-like
superfamily: Methylglyoxal synthase-like
family: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
domain: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.58  E-value=1  Score=26.04  Aligned_cols=62  Identities=16%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEe--------cCC---------CCCCCcchHHHHHHHHhcCeEEEE
Q 044867            8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI--------DDQ---------LNRGDEISESLLNAIQASAISVIV   70 (81)
Q Consensus         8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~--------d~~---------~~~G~~~~~~i~~aI~~S~~~I~v   70 (81)
                      .++=.||||-+..|.. .++ .+...|.+.|++++-        .+.         +..|   .+++.+.|++-++.+||
T Consensus         5 p~~G~v~iSv~d~dK~-~~~-~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~ki~~~---~p~i~d~i~~gkidlVI   79 (138)
T d1a9xa2           5 KKHGRALLSVREGDKE-RVV-DLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEG---RPHIQDRIKNGEYTYII   79 (138)
T ss_dssp             CSSSEEEEECCGGGGT-THH-HHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTC---SSBHHHHHHHTCCSEEE
T ss_pred             CCCCEEEEEEehhhhh-HHH-HHHHHHHHCCCEEEecCchHHHHHHhccccccccccccc---cccHhHHHhcCCeEEEE
Confidence            3455899999888753 443 666666666666532        221         2223   25788889999999998


Q ss_pred             ecCC
Q 044867           71 FSEG   74 (81)
Q Consensus        71 ~S~~   74 (81)
                      -+++
T Consensus        80 Nt~~   83 (138)
T d1a9xa2          80 NTTS   83 (138)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            8875

>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Prolyl-tRNA synthetase (ProRS) domain
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

Probab=81.31  E-value=0.3  Score=27.65  Aligned_cols=45  Identities=16%  Similarity=0.170  Sum_probs=29.9

Q ss_pred             CCcccEEEe-ceec---cCcccHHHHHHHHHhcCCceEEecCC-CCCCCc
Q 044867            8 NKKYDVFVS-FRGE---DTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDE   52 (81)
Q Consensus         8 ~~~~dVFIS-y~~~---D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~   52 (81)
                      --+++|.|- -..+   +....++.+|...|++.|+++-+|.+ ...|..
T Consensus         9 iAP~qV~Iipi~~~~~~e~~~~~a~~l~~~L~~~gi~v~~D~r~~~~g~K   58 (127)
T d1nj1a1           9 VAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRK   58 (127)
T ss_dssp             TSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHH
T ss_pred             cCCceEEEEEccCCCchHHHHHHHHHHHHHHHhcCCceEEEeccchHHHH
Confidence            345677663 2111   11246899999999999999999975 444443