Citrus Sinensis ID: 044901

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MDQLPKNLLPDEANPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGEKAFALVDDRERFEVSPKHNSVYDIEEFSYVGSRSVGEVQMV
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHcccEEccccccEEEHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHcHHHHHHHcccccccccccccccccccccccccccccccEEEc
mdqlpknllpdeanpewmnkgdnaWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNflgkpnvaldekFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAfsiwcpngwlaklgiidfAGGYVIHVSAGVagftasywvgprsdkdrekfppnnIILMLAGAGLlwmgwsgfngggpfaiSTDASLAILNTHVCTSTSLLTWLLldtsfygkpsviGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGllrlvddpmavFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLqngrtsagLRQMGVQLLGIAFVICLNIATTSIICWLIGLIvplrlskdelnigdeavhgekafalvddrerfevspkhnsvydieefsyvgsrsvgevqmv
mdqlpknllpdeanpeWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGEKAfalvddrerfevspkhnsvydieefsyvgsrsvgevqmv
MDQLPKNLLPDEANPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSafmafyafamvfvCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITliliagaligRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIIlmlagagllwmgwsgFNGGGPFAISTDASLAILNTHVCtstslltwllldtsFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGEKAFALVDDRERFEVSPKHNSVYDIEEFSYVGSRSVGEVQMV
******************NKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPR*******FPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGEKAFALVDDRERFEVSPKHNSVYDIEEFSYV***********
********LPDEANPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGEKAFALVDD*********************************
MDQLPKNLLPDEANPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGEKAFALVDDRERFEVSPKHNSVYDIEEFSYVGSRSVGEVQMV
*************NPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGEKAFALVDDRE*******************************
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDQLPKNLLPDEANPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGEKAFALVDDRERFEVSPKHNSVYDIEEFSYVGSRSVGEVQMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q84KJ6498 Ammonium transporter 3 me yes no 0.901 0.865 0.589 1e-153
Q69T29480 Ammonium transporter 3 me no no 0.935 0.931 0.581 1e-151
Q851M9479 Ammonium transporter 3 me no no 0.901 0.899 0.597 1e-147
Q9M6N7475 Ammonium transporter 2 OS yes no 0.935 0.941 0.563 1e-141
Q84KJ7486 Ammonium transporter 2 me no no 0.903 0.888 0.572 1e-140
Q8S230501 Ammonium transporter 2 me no no 0.914 0.872 0.552 1e-140
Q8S233497 Ammonium transporter 2 me no no 0.920 0.885 0.539 1e-136
Q10CV4299 Putative ammonium transpo no no 0.476 0.762 0.517 1e-62
O66515423 Ammonia channel OS=Aquife yes no 0.834 0.943 0.354 4e-61
P69681428 Ammonia channel OS=Escher N/A no 0.845 0.943 0.368 2e-59
>sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  542 bits (1396), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/468 (58%), Positives = 344/468 (73%), Gaps = 37/468 (7%)

Query: 13  ANPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCW 72
           A PEW+NKGDNAWQ+ +ATLVG+QS+PGLVILYGS+V KKWA+NSAFMA YAFA V++CW
Sbjct: 18  AVPEWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVWLCW 77

Query: 73  VGWAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYI---------------------- 110
           V W Y MSFG +L+ F GK   AL + FLL QA L                         
Sbjct: 78  VTWGYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKGGGGADAVVETPWVNPL 137

Query: 111 -PTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWL 169
            P ATMV+FQ VFA ITLIL+AG+L+GRMN +AWMLFVPLWLT SYTV AFS+W   G+L
Sbjct: 138 YPMATMVYFQCVFAAITLILLAGSLLGRMNIKAWMLFVPLWLTFSYTVGAFSLWG-GGFL 196

Query: 170 AKLGIIDFAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWS 229
              G++D++GGYVIH+S+GVAGFTA+YWVGPRS KDRE+FPPNN++LML GAG+LWMGW+
Sbjct: 197 FHWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSTKDRERFPPNNVLLMLTGAGILWMGWA 256

Query: 230 GFNGGGPFAISTDASLAILNTHVCTSTSLLTWLLLDTSFYGKPSVIGAVQGMITGLVCIT 289
           GFNGG P++ + D+SLA+LNT++C +TSLL W  LD  F+ KPSVIGAVQGMITGLVCIT
Sbjct: 257 GFNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQGMITGLVCIT 316

Query: 290 PAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILT 349
           P AG+VQGWAA+ MG++SGS+PW+TMMV+H +  LL+ VDD + VFHTHAVAG LGG  T
Sbjct: 317 PGAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDTLGVFHTHAVAGFLGGATT 376

Query: 350 GFFAVPKLCRLFYMLPDWEK--YIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATT 407
           G FA P LC LF  + +     Y G   GLQ  R          Q+ G  F+IC N+  T
Sbjct: 377 GLFAEPVLCSLFLPVTNSRGAFYPGRGGGLQFVR----------QVAGALFIICWNVVVT 426

Query: 408 SIICWLIGLIVPLRLSKDELNIGDEAVHGEKAFALVDDRERFEVSPKH 455
           S++C  +  +VPLR+ ++EL IGD+AVHGE+A+AL  D E+++ S KH
Sbjct: 427 SLVCLAVRAVVPLRMPEEELAIGDDAVHGEEAYALWGDGEKYD-STKH 473
Involved in ammonium transport.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q69T29|AMT33_ORYSJ Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1 Back     alignment and function description
>sp|Q851M9|AMT32_ORYSJ Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2 Back     alignment and function description
>sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8S233|AMT23_ORYSJ Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q10CV4|AMT41_ORYSJ Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1 Back     alignment and function description
>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1 Back     alignment and function description
>sp|P69681|AMTB_ECOLI Ammonia channel OS=Escherichia coli (strain K12) GN=amtB PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
224123404460 ammonium transporter [Populus trichocarp 0.962 1.0 0.819 0.0
357512317480 Ammonium transporter 3 member [Medicago 0.993 0.989 0.758 0.0
356571182479 PREDICTED: ammonium transporter 3 member 0.993 0.991 0.749 0.0
225451334473 PREDICTED: ammonium transporter 3 member 0.987 0.997 0.748 0.0
225437174472 PREDICTED: ammonium transporter 3 member 0.985 0.997 0.763 0.0
255559879479 ammonium transporter, putative [Ricinus 0.989 0.987 0.722 0.0
224066329448 ammonium transporter [Populus trichocarp 0.920 0.982 0.766 0.0
224082702441 ammonium transporter [Populus trichocarp 0.922 1.0 0.767 0.0
225430212482 PREDICTED: ammonium transporter 3 member 0.993 0.985 0.681 0.0
147856666482 hypothetical protein VITISV_020759 [Viti 0.993 0.985 0.679 0.0
>gi|224123404|ref|XP_002319070.1| ammonium transporter [Populus trichocarpa] gi|222857446|gb|EEE94993.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/461 (81%), Positives = 421/461 (91%), Gaps = 1/461 (0%)

Query: 18  MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAY 77
           MNKGDNAWQLTAATLVGLQSIPGLVILYGS+V KKWAINSAFM FYAFAMV VCWVGW +
Sbjct: 1   MNKGDNAWQLTAATLVGLQSIPGLVILYGSIVKKKWAINSAFMVFYAFAMVLVCWVGWGF 60

Query: 78  RMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGR 137
           RMSFGE+LV FLGKP VALDEKFLLG+AFLGY PTATMVFFQGVFACITLILIAG L+GR
Sbjct: 61  RMSFGEKLVFFLGKPAVALDEKFLLGKAFLGYFPTATMVFFQGVFACITLILIAGCLLGR 120

Query: 138 MNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYW 197
           MNFRAW++FVPLWLT SYT+ AFSIWCP+GWLAKLG+IDF+GGYVIH+SAGVAGFTA+YW
Sbjct: 121 MNFRAWIMFVPLWLTFSYTITAFSIWCPDGWLAKLGVIDFSGGYVIHLSAGVAGFTAAYW 180

Query: 198 VGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTS 257
           VGPR DKDRE FPPNNIILMLAGAGLLWMGWSGFNGGGPFA+ST +SLA+LNTHVCT+TS
Sbjct: 181 VGPRIDKDREMFPPNNIILMLAGAGLLWMGWSGFNGGGPFAVSTISSLAVLNTHVCTATS 240

Query: 258 LLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMV 317
           LLTWLLLDT F+GKPSVIGAVQGMITGLVCITPAAGVVQ WAA+ MG++SGSVPWYTMMV
Sbjct: 241 LLTWLLLDTCFFGKPSVIGAVQGMITGLVCITPAAGVVQCWAAILMGIVSGSVPWYTMMV 300

Query: 318 LHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGL 377
           LH K+  LRLVDDP+A+FHTHA+AG LGGILTGFFAVPKLCRLFYM+PDWEKYIGL YGL
Sbjct: 301 LHKKVKFLRLVDDPIAIFHTHAIAGGLGGILTGFFAVPKLCRLFYMVPDWEKYIGLGYGL 360

Query: 378 QNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIGDEAVHGE 437
           QNG+TSAGLRQMG+QL GI FV  +NI+TTS+ICW +GL VPLRLS DEL IGD+A+HGE
Sbjct: 361 QNGQTSAGLRQMGIQLGGILFVTFINISTTSMICWFVGLFVPLRLSDDELQIGDDAIHGE 420

Query: 438 KAFALVDDRERFEVSPKHNSVYDIEEFSYVGSRSVGEVQMV 478
           +AFAL +D E F+ + K NS ++ E+ SY+ SRS G+VQMV
Sbjct: 421 EAFALWNDEETFQ-NTKTNSAFESEDSSYMKSRSFGDVQMV 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357512317|ref|XP_003626447.1| Ammonium transporter 3 member [Medicago truncatula] gi|355501462|gb|AES82665.1| Ammonium transporter 3 member [Medicago truncatula] Back     alignment and taxonomy information
>gi|356571182|ref|XP_003553758.1| PREDICTED: ammonium transporter 3 member 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225451334|ref|XP_002274524.1| PREDICTED: ammonium transporter 3 member 1 [Vitis vinifera] gi|298204858|emb|CBI34165.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225437174|ref|XP_002274875.1| PREDICTED: ammonium transporter 3 member 1 [Vitis vinifera] gi|296084499|emb|CBI25058.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559879|ref|XP_002520958.1| ammonium transporter, putative [Ricinus communis] gi|223539795|gb|EEF41375.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224066329|ref|XP_002302084.1| ammonium transporter [Populus trichocarpa] gi|222843810|gb|EEE81357.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224082702|ref|XP_002306803.1| ammonium transporter [Populus trichocarpa] gi|222856252|gb|EEE93799.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430212|ref|XP_002282475.1| PREDICTED: ammonium transporter 3 member 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856666|emb|CAN80314.1| hypothetical protein VITISV_020759 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2042917475 AMT2 "ammonium transporter 2" 0.935 0.941 0.491 1.6e-116
UNIPROTKB|Q84KJ7486 AMT2-1 "Ammonium transporter 2 0.903 0.888 0.510 3.4e-116
UNIPROTKB|P69681428 amtB "AmtB" [Escherichia coli 0.707 0.789 0.347 1.8e-50
TIGR_CMR|CPS_3995445 CPS_3995 "ammonium transporter 0.849 0.912 0.307 5.4e-47
TIGR_CMR|DET_1125408 DET_1125 "ammonium transporter 0.679 0.796 0.315 1.1e-46
UNIPROTKB|G4MMA1485 MGG_16392 "Uncharacterized pro 0.853 0.841 0.323 7.1e-45
POMBASE|SPCPB1C11.01497 amt1 "ammonium transporter Amt 0.866 0.832 0.303 1.9e-42
TIGR_CMR|GSU_0940489 GSU_0940 "ammonium transporter 0.801 0.783 0.304 3.2e-41
TIGR_CMR|CHY_0073438 CHY_0073 "ammonium transporter 0.707 0.771 0.313 3.6e-41
TIGR_CMR|SPO_2093431 SPO_2093 "ammonium transporter 0.669 0.742 0.297 4.1e-41
TAIR|locus:2042917 AMT2 "ammonium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
 Identities = 231/470 (49%), Positives = 303/470 (64%)

Query:    15 PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
             PEW+NKGDNAWQLTAATLVGLQS+PGLVILY S+V KKWA+NS             CWV 
Sbjct:    13 PEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVL 72

Query:    75 WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLG-------YIPTATMVFFQGVFACITX 127
               Y+M+FGE L+ F GK   A D+ +L GQA +        Y P AT+V+FQ  FA IT 
Sbjct:    73 LCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSNVAAPYFPMATLVYFQFTFAAITT 132

Query:   128 XXXXXXXXXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSA 187
                      RMN +AWM FVPLWL  SYTV A+SIW   G+L + G+ID++GGYVIH+S+
Sbjct:   133 ILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIW-GGGFLYQWGVIDYSGGYVIHLSS 191

Query:   188 GVAGFTASYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAI 247
             GVAGF A+YWVGPR   DRE+FPPNN               SGFNGG P+A +  +S+A+
Sbjct:   192 GVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANLTSSIAV 251

Query:   248 LNTHVCXXXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLIS 307
             LNT++               F+GKPSVIGA+QGM+TGL  +TP AG++Q WAA+ +G++S
Sbjct:   252 LNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPGAGLIQTWAAIIIGVVS 311

Query:   308 GSVPWYTMMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDW 367
             G+ PW +MM++H K  LL+ VDD +AVF+THAVAG LGGI+TG FA P LC L   LP  
Sbjct:   312 GTAPWASMMIIHKKSALLQKVDDTLAVFYTHAVAGLLGGIMTGLFAHPDLCVLVLPLPAT 371

Query:   368 EKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDEL 427
                 G  YG   G+      Q+  QL G AF+   N+ +T+II   I + +PLR++++EL
Sbjct:   372 R---GAFYGGNGGK------QLLKQLAGAAFIAVWNVVSTTIILLAIRVFIPLRMAEEEL 422

Query:   428 NIGDEAVHGEKAFALVDDRERFEVSPKHNSVYDIEEF----SYV-GSRSV 472
              IGD+A HGE+A+AL  D E+F+ + +H   ++ ++     SYV G+R V
Sbjct:   423 GIGDDAAHGEEAYALWGDGEKFDAT-RHVQQFERDQEAAHPSYVHGARGV 471
GO:0005737 "cytoplasm" evidence=ISM
GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS
GO:0015695 "organic cation transport" evidence=ISS;IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0015398 "high affinity secondary active ammonium transmembrane transporter activity" evidence=IDA
GO:0015696 "ammonium transport" evidence=RCA;TAS
GO:0009624 "response to nematode" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0006995 "cellular response to nitrogen starvation" evidence=RCA
GO:0007154 "cell communication" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009581 "detection of external stimulus" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0051707 "response to other organism" evidence=RCA
UNIPROTKB|Q84KJ7 AMT2-1 "Ammonium transporter 2 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P69681 amtB "AmtB" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3995 CPS_3995 "ammonium transporter" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1125 DET_1125 "ammonium transporter" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|G4MMA1 MGG_16392 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPCPB1C11.01 amt1 "ammonium transporter Amt1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0940 GSU_0940 "ammonium transporter" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0073 CHY_0073 "ammonium transporter" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2093 SPO_2093 "ammonium transporter" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M6N7AMT2_ARATHNo assigned EC number0.56380.93510.9410yesno
Q9C0V1AMT1_SCHPONo assigned EC number0.31800.87230.8390yesno
Q9BLG4AMT1_DICDINo assigned EC number0.30220.84300.8704yesno
P63520AMT_MYCBONo assigned EC number0.32680.87020.8721yesno
Q07429NRGA_BACSUNo assigned EC number0.34260.82420.9752yesno
O66515AMT_AQUAENo assigned EC number0.35400.83470.9432yesno
P63519AMT_MYCTUNo assigned EC number0.32680.87020.8721yesno
Q84KJ6AMT31_ORYSJNo assigned EC number0.58970.90160.8654yesno
O26759Y663_METTHNo assigned EC number0.34970.83260.9660yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-115
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-112
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 5e-73
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 2e-72
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 1e-24
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
 Score =  344 bits (886), Expect = e-115
 Identities = 171/432 (39%), Positives = 235/432 (54%), Gaps = 25/432 (5%)

Query: 18  MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAY 77
           M+ GD AW L +A LV L   PGL + YG LV KK  +N+   +F AFA+V + W+   Y
Sbjct: 1   MDSGDTAWMLLSAALVLLM-TPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGY 59

Query: 78  RMSFGERLVNFLGKP-NVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIG 136
            ++FG     F+G      L+       A    IP      FQ +FA IT  LI+GA+  
Sbjct: 60  SLAFGPDGNGFIGNLDQFFLNGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAE 119

Query: 137 RMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASY 196
           RM F A++LF  LW T  Y   A  +W   GWLA LG +DFAGG V+H++AG A   A+ 
Sbjct: 120 RMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALDFAGGTVVHINAGFAALAAAL 179

Query: 197 WVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTST 256
            +G R        PP+N+ L++ GA LLW GW GFN G   A +  A+LA +NT++  + 
Sbjct: 180 VLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAA 239

Query: 257 SLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMM 316
             L W+L++    GKPS++GA  G + GLV ITPAAG V  W AL +GLI+G + ++ + 
Sbjct: 240 GALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVK 299

Query: 317 VLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYG 376
           +L  K+G    VDD + VF  H V G +G ILTG FA P +              G   G
Sbjct: 300 LLKKKLG----VDDALDVFGVHGVGGIVGAILTGIFAAPAV--------------GGGGG 341

Query: 377 LQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEAVH 435
           L  G    G  Q+GVQLLG+   I      T II  ++ LI+ LR+S++E   G D + H
Sbjct: 342 LFYG----GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLIIGLRVSEEEELEGLDISEH 397

Query: 436 GEKAFALVDDRE 447
           GE A++  +   
Sbjct: 398 GESAYSEEEATI 409

Length = 409
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
PRK10666428 ammonium transporter; Provisional 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 86.41
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5e-109  Score=844.81  Aligned_cols=403  Identities=42%  Similarity=0.717  Sum_probs=375.7

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcccccc
Q 044901           18 MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALD   97 (478)
Q Consensus        18 ~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~~~   97 (478)
                      ++..|+.|+|+|+.|| ++|||||+++|+|++|+||+.|+++|+++++++++++|+++||+++|+++.++|+|+....+.
T Consensus         1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~   79 (409)
T COG0004           1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFL   79 (409)
T ss_pred             CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhc
Confidence            3578999999999999 999999999999999999999999999999999999999999999999877889999765443


Q ss_pred             hhhhccccc-CCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCcee
Q 044901           98 EKFLLGQAF-LGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIID  176 (478)
Q Consensus        98 ~~~~~~~~~-~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~D  176 (478)
                      .+...+... ..++|+.++++||++||++|++|++|+++||+|+++|++|+++|.+++|||++||+|+++|||.++|++|
T Consensus        80 ~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~~D  159 (409)
T COG0004          80 NGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALD  159 (409)
T ss_pred             cCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCcee
Confidence            333222221 2468999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCceeehhhhHHHHHHHHHhhCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHHHH
Q 044901          177 FAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTST  256 (478)
Q Consensus       177 faG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~  256 (478)
                      ||||+|||+.+|++||++++++|||+++.+++++|||++++++|+.|||+||||||+||++..+.++..+++||++|+++
T Consensus       160 FAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~  239 (409)
T COG0004         160 FAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAA  239 (409)
T ss_pred             cCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccccccccc
Q 044901          257 SLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFH  336 (478)
Q Consensus       257 g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~  336 (478)
                      ++++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|+++.++++||    +|+|||+|+++
T Consensus       240 g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~----l~~DD~ld~f~  315 (409)
T COG0004         240 GALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK----LGVDDALDVFG  315 (409)
T ss_pred             HHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCccccee
Confidence            99999999999999999999999999999999999999999999999999999999999988876    89999999999


Q ss_pred             ccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044901          337 THAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGL  416 (478)
Q Consensus       337 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~  416 (478)
                      +||++|+||+|++|+|+++++..       ..   |.+|+        +.+|++.|+.+++++.+|++++++++++++|+
T Consensus       316 vHGvgGi~G~i~~GiFa~~~~~~-------~~---G~~~~--------~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~  377 (409)
T COG0004         316 VHGVGGIVGAILTGIFAAPAVGG-------GG---GLFYG--------GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKL  377 (409)
T ss_pred             ccchhhHHHHHHHHHhcCccccc-------cC---ccccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999986410       11   55542        35999999999999999999999999999999


Q ss_pred             hcCCCCChHHhhcC-Chhhhcccccccc
Q 044901          417 IVPLRLSKDELNIG-DEAVHGEKAFALV  443 (478)
Q Consensus       417 ~~~LRv~~e~E~~G-D~~~hg~~ay~~~  443 (478)
                      +.+||+|+|||++| |.+||||++|++.
T Consensus       378 ~~gLRvs~eeE~~GlD~~~Hge~aY~~~  405 (409)
T COG0004         378 IIGLRVSEEEELEGLDISEHGESAYSEE  405 (409)
T ss_pred             ccCCCCCHHHHhhCCChHHhcccccccc
Confidence            99999999999999 9999999999864

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 2e-46
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-46
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 3e-46
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 9e-46
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-45
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 2e-45
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 2e-45
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 3e-45
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 3e-45
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 3e-45
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 3e-45
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 2e-44
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 6e-44
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 6e-40
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 7e-32
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 142/427 (33%), Positives = 196/427 (45%), Gaps = 25/427 (5%)
Query: 15  PEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSXXXXXXXXXXXXXCWVG 74
           P   +K DNA+ +    LV   +IPG+ + YG L+  K  ++               WV 
Sbjct: 2   PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 75  WAYRMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITXXXXXXXX 134
           + Y ++FGE   NF G  N  + +   L  A +G I     V FQG FACIT        
Sbjct: 62  YGYSLAFGEG-NNFFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGAL 119
Query: 135 XXRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTA 194
             R+ F A ++FV +WLT SY   A  +W   G LA  G +DFAGG V+H++A +AG   
Sbjct: 120 AERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 195 SYWVGPRSDKDREKFPPNNXXXXXXXXXXXXXXXSGFNGGGPFAISTDASLAILNTHVCX 254
           +Y +G R    +E F P+N                GFN G     +  A+LA +NT V  
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 255 XXXXXXXXXXXXXFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYT 314
                          GKPS++GA  G I GLV +TPA G +    AL +G+++G    + 
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 315 MMVLHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLA 374
           + +L     LLR VDDP  VF  H V G +G I+TG FA   L             +G A
Sbjct: 299 VTMLKR---LLR-VDDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------GGVGFA 343
Query: 375 YGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEA 433
            G+  G       Q+ VQL  IA  I  +     I   L  L V LR+ +++   G D  
Sbjct: 344 EGVTMG------HQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 397
Query: 434 VHGEKAF 440
            HGE A+
Sbjct: 398 SHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 1e-112
1u7g_A385 Probable ammonium transporter; right handed helica 1e-109
3b9w_A407 Ammonium transporter family; membrane protein, amm 1e-67
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 3e-58
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
 Score =  336 bits (864), Expect = e-112
 Identities = 128/426 (30%), Positives = 203/426 (47%), Gaps = 35/426 (8%)

Query: 18  MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAY 77
           M+ G+ AW L +  LV +  +PG+   Y  +V +K A+N   ++F +  +  + W+ + Y
Sbjct: 1   MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59

Query: 78  RMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGR 137
            +SFG  +   +G     L+   L G            + +Q +FA +T+ ++  A+  R
Sbjct: 60  SVSFGNDISGIIG----GLNYALLSGVK----GEDLLFMMYQMMFAAVTIAILTSAIAER 111

Query: 138 MNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYW 197
               +++L   LWLT  Y   A  +W   GWLAKLG +DFAGG V+H+S+G A    +  
Sbjct: 112 AKVSSFILLSALWLTFVYAPFAHWLW-GGGWLAKLGALDFAGGMVVHISSGFAALAVAMT 170

Query: 198 VGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTS 257
           +G R+  +     P++I L L GA LLW GW GFNGG   A +  A  A++ T+   + +
Sbjct: 171 IGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVA 230

Query: 258 LLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMV 317
              W+++     GKP  +G V G I GL  ITPAAG V    A+ +GL++G V +   M 
Sbjct: 231 GFVWMVIGW-IKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYL-AMD 288

Query: 318 LHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGL 377
              K      +D+ +  +  H + G  G +  G  A           P+   Y GL +G 
Sbjct: 289 FRIKKK----IDESLDAWAIHGIGGLWGSVAVGILAN----------PEVNGYAGLLFG- 333

Query: 378 QNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRLSKDELNIG-DEAVHG 436
                    + +  QL+ +A         T I+   +   V LR+S  E  +G D + H 
Sbjct: 334 -------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHE 386

Query: 437 EKAFAL 442
           E A+ L
Sbjct: 387 EVAYTL 392
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=5e-107  Score=841.08  Aligned_cols=393  Identities=32%  Similarity=0.611  Sum_probs=362.0

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCcccccc
Q 044901           18 MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVALD   97 (478)
Q Consensus        18 ~~~~d~~w~l~~~~lV~~~m~~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~~~   97 (478)
                      +|+.|+.|+|+|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++.++|+|+.++++.
T Consensus         1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~   79 (399)
T 2b2h_A            1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALL   79 (399)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGG
T ss_pred             CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhc
Confidence            3568999999999999 999999999999999999999999999999999999999999999999875689998554432


Q ss_pred             hhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCceec
Q 044901           98 EKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDF  177 (478)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~Df  177 (478)
                      .+.       +..| .++++||++||++|++|++||++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++||
T Consensus        80 ~~~-------~~~~-~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~DF  150 (399)
T 2b2h_A           80 SGV-------KGED-LLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLAKLGALDF  150 (399)
T ss_dssp             TTC-------CTHH-HHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHTTCCCS
T ss_pred             cCC-------CCCc-hhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHHhcCCccc
Confidence            221       0112 6799999999999999999999999999999999999999999999999995 899999999999


Q ss_pred             cCceeehhhhHHHHHHHHHhhCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHHHHH
Q 044901          178 AGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTS  257 (478)
Q Consensus       178 aG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g  257 (478)
                      |||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++..+..+.++++||++|+++|
T Consensus       151 AGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag  230 (399)
T 2b2h_A          151 AGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVA  230 (399)
T ss_dssp             SCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999988888999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhccccccccccccccc
Q 044901          258 LLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFHT  337 (478)
Q Consensus       258 ~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~v  337 (478)
                      +++|+++++++ ||+|+.+++||+|||||||||+|++++||+|++||+++|++|+++.+ +++|    +|||||||++++
T Consensus       231 ~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~-l~~k----l~iDD~l~a~~v  304 (399)
T 2b2h_A          231 GFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMD-FRIK----KKIDESLDAWAI  304 (399)
T ss_dssp             HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHH-HHHH----TTCCCTTCHHHH
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH-HHHH----cCCCCCCCceec
Confidence            99999999999 99999999999999999999999999999999999999999999984 4433    899999999999


Q ss_pred             cccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044901          338 HAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLI  417 (478)
Q Consensus       338 Hg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~~  417 (478)
                      ||+||+||++++|+|++++...       .+   |++|++        .+|++.|+++++++++|+++.++++++++|++
T Consensus       305 Hgv~Gi~G~l~~glfa~~~~~g-------~~---Gl~~g~--------~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~  366 (399)
T 2b2h_A          305 HGIGGLWGSVAVGILANPEVNG-------YA---GLLFGN--------PQLLVSQLIAVASTTAYAFLVTLILAKAVDAA  366 (399)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHS-------CC---CGGGTC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHccccccC-------CC---ccccCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999876421       11   777742        58999999999999999999999999999999


Q ss_pred             cCCCCChHHhhcC-Chhhhccccccccc
Q 044901          418 VPLRLSKDELNIG-DEAVHGEKAFALVD  444 (478)
Q Consensus       418 ~~LRv~~e~E~~G-D~~~hg~~ay~~~~  444 (478)
                      .+||+++|||++| |.+||||++||+.+
T Consensus       367 ~glRv~~e~E~~GlD~~~hg~~ay~~~~  394 (399)
T 2b2h_A          367 VGLRVSSQEEYVGLDLSQHEEVAYTLEH  394 (399)
T ss_dssp             TCSBCCHHHHHHCHHHHHHCCCSCC---
T ss_pred             ccCCCCHHHHHhCCCHHHhCcccCCccc
Confidence            9999999999999 99999999998744
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 478
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 5e-57
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  191 bits (486), Expect = 5e-57
 Identities = 135/405 (33%), Positives = 199/405 (49%), Gaps = 24/405 (5%)

Query: 18  MNKGDNAWQLTAATLVGLQSIPGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAY 77
            +K DNA+ +    LV   +IPG+ + YG L+  K  ++        FA+V + WV + Y
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 78  RMSFGERLVNFLGKPNVALDEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGR 137
            ++ GE    F     + L    L        I     V FQG FACIT+ LI GAL  R
Sbjct: 63  SLASGEGNNFFGNINWLMLKNIELTAVMG--SIYQYIHVAFQGSFACITVGLIVGALAER 120

Query: 138 MNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIIDFAGGYVIHVSAGVAGFTASYW 197
           + F A ++FV +WLT SY      +    G LA  G +DFAGG V+H++A +AG   +Y 
Sbjct: 121 IRFPAVLIFVVVWLTLSYIPI-AHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYL 179

Query: 198 VGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTSTS 257
           +G R    +E F P+N+ ++  G  +L++GW GFN G     +  A+LA +NT V T+ +
Sbjct: 180 IGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAA 239

Query: 258 LLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMV 317
           +L W+  + +  G PS++GA  G I GLV +TPA G +    AL +G+++G    + + +
Sbjct: 240 ILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTM 299

Query: 318 LHNKIGLLRLVDDPMAVFHTHAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGL 377
           L   + +    DDP  VF  H V G +G I+TG FA   L                  G+
Sbjct: 300 LKRLLRV----DDPCDVFGVHGVCGIVGCIMTGIFAASSL-----------------GGV 338

Query: 378 QNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGLIVPLRL 422
                     Q+ VQL  IA  I  +     I   L  L V LR+
Sbjct: 339 GFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5e-92  Score=726.91  Aligned_cols=380  Identities=37%  Similarity=0.619  Sum_probs=349.3

Q ss_pred             ccccchHHHHHHHHHHHHHHH-HHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccCccccc
Q 044901           18 MNKGDNAWQLTAATLVGLQSI-PGLVILYGSLVHKKWAINSAFMAFYAFAMVFVCWVGWAYRMSFGERLVNFLGKPNVAL   96 (478)
Q Consensus        18 ~~~~d~~w~l~~~~lV~~~m~-~Gf~lleaG~vr~kn~~~~l~~~~~~~~v~~~~w~~~Gy~lafg~~~~~fiG~~~~~~   96 (478)
                      .|+.|+.|+|+|++|| ++|| |||+++|+|+||+||++|+++||++++++++++||++||+++||++ ++++|...+.+
T Consensus         3 ~d~~d~~~~l~~~~lV-~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~~   80 (383)
T d1u7ga_           3 ADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM   80 (383)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred             cCcccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchhh
Confidence            3578999999999999 8887 8999999999999999999999999999999999999999999986 46777766555


Q ss_pred             chhhhcccccCCCcchhhhhhhhhHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccccCcee
Q 044901           97 DEKFLLGQAFLGYIPTATMVFFQGVFACITLILIAGALIGRMNFRAWMLFVPLWLTCSYTVAAFSIWCPNGWLAKLGIID  176 (478)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~I~sGavaeR~~~~~~li~~~l~~~~vYp~~ahwvW~~~GwL~~lG~~D  176 (478)
                      ..+.... ....++|..++++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+| ++|||.++|++|
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw-~~g~l~~lG~~D  158 (383)
T d1u7ga_          81 LKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALD  158 (383)
T ss_dssp             GTTCCTT-CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHH-SSCHHHHHTCCC
T ss_pred             ccCcccc-cccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHheec-CCCccccCCcee
Confidence            4433211 22456899999999999999999999999999999999999999999999999999999 799999999999


Q ss_pred             ccCceeehhhhHHHHHHHHHhhCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCCccccChhhhhHHHHHHHHHHH
Q 044901          177 FAGGYVIHVSAGVAGFTASYWVGPRSDKDREKFPPNNIILMLAGAGLLWMGWSGFNGGGPFAISTDASLAILNTHVCTST  256 (478)
Q Consensus       177 faG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lGt~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~  256 (478)
                      ||||++||++||+++|++++++|||++|++++++|||++++.+|+++||+||+|||+||+...+..+.++.+||++|+++
T Consensus       159 faGs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~  238 (383)
T d1u7ga_         159 FAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAA  238 (383)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHH
T ss_pred             ccCceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCHhhhhhhhhccceeecCCCCCcchHHHHHHHHhhhhhhhHHHHHHHhhhcccccccccccccc
Q 044901          257 SLLTWLLLDTSFYGKPSVIGAVQGMITGLVCITPAAGVVQGWAALFMGLISGSVPWYTMMVLHNKIGLLRLVDDPMAVFH  336 (478)
Q Consensus       257 g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaita~a~~v~p~~AliiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~  336 (478)
                      ++++++..+++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.+++++|    +|||||||+++
T Consensus       239 ~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~----~~iDD~~~~~~  314 (383)
T d1u7ga_         239 AILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL----LRVDDPCDVFG  314 (383)
T ss_dssp             HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCCGGGHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhh----cccccccceEe
Confidence            99999999999999999999999999999999999999999999999999999999999988765    89999999999


Q ss_pred             ccccchhhhhhhhhhccccccccccccCCCcccccceeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044901          337 THAVAGTLGGILTGFFAVPKLCRLFYMLPDWEKYIGLAYGLQNGRTSAGLRQMGVQLLGIAFVICLNIATTSIICWLIGL  416 (478)
Q Consensus       337 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~iLk~  416 (478)
                      +||+||+||++++|+|++++.....             +.. +   ....+|+++|+++++++++|++++++++++++||
T Consensus       315 vHg~~Gi~G~l~~glfa~~~~~g~~-------------~~~-~---~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~  377 (383)
T d1u7ga_         315 VHGVCGIVGCIMTGIFAASSLGGVG-------------FAE-G---VTMGHQLLVQLESIAITIVWSGVVAFIGYKLADL  377 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTSGGGTCCC-------------CCT-T---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhhhHHHHHHHHHHhcCccccccc-------------ccc-c---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999987653321             111 0   1135899999999999999999999999999999


Q ss_pred             hcCCCC
Q 044901          417 IVPLRL  422 (478)
Q Consensus       417 ~~~LRv  422 (478)
                      +.+|||
T Consensus       378 ~~gLRV  383 (383)
T d1u7ga_         378 TVGLRV  383 (383)
T ss_dssp             HTCSBC
T ss_pred             CcCCcC
Confidence            999997