Citrus Sinensis ID: 044903

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MSKYRLTISSKRQKLTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSKLG
Secondary Structure (PSIPRED)
ccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHcHHHHHHHcccccHHHHccccEEEEEcccccccEEEEEEccccccEEEcccccccccccccccccccccccccEEEEEEccEEEEEcccccccccccccEEEEEcccccEEcccccccccccEEEEEEccEEEEEcccccccccccccccEEEEcccccccccEEEccccccccEEEcEEEEEEEccEEEEEcccccEEEEEEcccccEEEccccccccccccEEEEEccEEEEEEccccEEEEEEccccEEEEEEccccccccEEEEEEcccEEEEEEccccEEEEEEEEcccccEEEEEccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccHHHHHHHHHHHcccccccccHHHHccccccccccccccHHHHHHHHHHccHHHHHHHcHHHHHHHccccccccccEEEEEEEEccccccEEEEEEEccccccEEEcccccccccccccccccccccccccccEEEEEcEEEEEEcccccccccccEEEEEccccccEEEccccccccccEEEEEEccEEEEEEcccccccccccccEEEEEEccccccccEEEEccccccccccEEEEEEEEccEEEEEccccccEEEEccccccEEEcccccccccccEEEEEEccEEEEEcccccEEEEEccccccEEEEccccccccccEEEEEccEEEEEEcccccEEEEEEEEccccccEEEEEccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
MSKYRLTISSKRQKLTQTlttqpqaqdqdkaqdddgddhqpllpglpdhIAHLClshvhpsilhNVCHSwrrliyspsfppflslyalfspksnssstpihlftfdpvsstwdplpppppdpplhlilhhpsflsrnlpVQLVSLSGKLILLAATthnfnpaltrplifdpicrtwtfgpelvtprrwcaagysRGAVYVASgigsqfssdVAKSVEKWdlmngeknsrwektgelkdgrfsrEAIDAVGWKGKLCLVNvkgaegavYDVVANTWDDMregmvrgwrgpvaamdeevlygidensctlskydEVMDDWKEVVKSDLLKGARHAAAGGGRVCAvcengggivVVDVkaaaaptifvvdtplgfeaLSVHILPRMSKLG
Flexible Loop (DISEMBL)
mskyrltisskrqkltqtlttqpqaqdqdKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDlmngeknsrwektgelkdgrfsREAIDAVGWKGKLCLVnvkgaegavYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSvhilprmsklg
Low Complexity Region (SEG)
MSKYRLTISSKRqkltqtlttqpqaqdqdkaqdddgddhqpllpglpdhIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWdplpppppdpplhlilhhpSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKgarhaaagggrvcavcENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSKLG
Disordered region (IsUnstruct)
********************************************GLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFS*********IHLFTF*******************HLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM****************GRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIL*******
Disordered Region (DISOPRED)
*********************************************LPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSKL*
Disordered Region (DISEMBL)
********SSKR************************DDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSKLG
Disordered Region (DISPRO)
****RLTISSKRQKLTQTLTTQP***DQD******GDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSKL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKYRLTISSKRQKLTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSKLG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q8GX29	395	F-box/kelch-repeat protei	yes	no	0.956	0.936	0.510	2e-95
Q93W93	434	F-box/kelch-repeat protei	no	no	0.744	0.663	0.25	1e-16
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.744	0.774	0.241	3e-12
Q9C6Z0	398	F-box/kelch-repeat protei	no	no	0.666	0.648	0.224	2e-07
Q0WW40	383	F-box/kelch-repeat protei	no	no	0.400	0.404	0.258	7e-07
O80582	409	F-box/kelch-repeat protei	no	no	0.607	0.574	0.235	7e-05
Q9CAG8	376	F-box/kelch-repeat protei	no	no	0.565	0.582	0.223	0.0003

>sp|Q8GX29|SKI25_ARATH F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1

 Score =  349 bits (895), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/390 (51%), Positives = 264/390 (67%), Gaps = 20/390 (5%)

Query: 11  KRQKLTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVH-PSILHNVCHS 69
           +R+ ++ T    P A+   + +   G+++  L+ GLPDHI+ +CLS VH PS+L  VC  
Sbjct: 7   RRESMSTTAAESPPAK---RRRTVTGNENSALIEGLPDHISEICLSLVHRPSLLSAVCTR 63

Query: 70  WRRLIYSPSFPPFLSLYALFSPKSNSS---STPIHLFTFDPVSSTWDPLPPPPPDPPLHL 126
           WRRL+YSP FP F SLYALF   ++ +   +  +    F+PVSS W PLPPPPPDPPLH 
Sbjct: 64  WRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHR 123

Query: 127 ILH-HPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP 185
           IL+ HPSF+S NLP+Q VS +GKLIL+A +    +PA++ PLIFDPI  +W+ GP + +P
Sbjct: 124 ILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSP 183

Query: 186 RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS---RWEKTGELKDGRFS 242
           RRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL    +N+    WEK  +++D RFS
Sbjct: 184 RRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFS 243

Query: 243 REAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY 299
           REAIDAVG++ KL +VNVKG    EGA+YDVV + W+ M E M+ GWRGPVAAM+EE+LY
Sbjct: 244 REAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWEPMPEEMLVGWRGPVAAMEEEILY 303

Query: 300 GIDENSCTLSKYDEVMDDWK----EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV 355
            +DE   T+ KYD+   +W+         ++LKGA    A  G++C V  + G IVVVDV
Sbjct: 304 SVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGATQVTADSGKLCVVTGD-GKIVVVDV 362

Query: 356 KAAAAPTIFVVDTPLGFEALSVHILPRMSK 385
            A  A  I+ V+ P G E +SVH+LPRMS+
Sbjct: 363 AAEPA-KIWNVEIPDGLEPVSVHVLPRMSQ 391

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 128/324 (39%), Gaps = 36/324 (11%)

Query: 14  KLTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHN----VCHS 69
           KL       P A  +  ++ +      PLLPGLPD +A  CL  V P   H     VC  
Sbjct: 50  KLCIQPDINPNAHRRKNSKRERTRIQPPLLPGLPDDLAVACLIRV-PRAEHRKLRLVCKR 108

Query: 70  WRRL-----IYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPL 124
           W RL      YS      +S   ++  K +     I   TFDP+S  W PLPP P +   
Sbjct: 109 WYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGK-ISWNTFDPISQLWQPLPPVPRE--- 164

Query: 125 HLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT 184
                     S  +      LSG  + L         ++ R + ++     W   P+++ 
Sbjct: 165 ---------YSEAVGFGCAVLSGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLR 215

Query: 185 PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE 244
            R +         +YVA G        + +++   ++ +  KN RW    ++        
Sbjct: 216 KRHFFGCCVINNCLYVAGGE----CEGIQRTLRSAEVYDPNKN-RWSFIADMSTAMV--- 267

Query: 245 AIDAVGWKGKLCLVNVKGAE---GAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGI 301
            +  V +  K  L  +   +      YD   N+W  + +GMV GWR P  +++   LYG+
Sbjct: 268 PLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSPVSDGMVAGWRNPCTSLNGR-LYGL 326

Query: 302 D-ENSCTLSKYDEVMDDWKEVVKS 324
           D  + C L  +DE  D W + + S
Sbjct: 327 DCRDGCKLRVFDESTDSWNKFMDS 350

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 133/339 (39%), Gaps = 51/339 (15%)

Query: 15  LTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHV---HPSILHNVCHSWR 71
           + +  TT       D+A+++     QPL+ GLP+ IA LCL  +   + ++  +V  SW 
Sbjct: 1   MAEQETTSNINTINDQAEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWN 60

Query: 72  RLIYSPSF----------PPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPD 121
           + I +P F           P+L ++A      N S+  I   + D  S  W  LPP P  
Sbjct: 61  KTITNPRFLFSKQSLSISSPYLFVFAF-----NKSTARIQWQSLDLASGRWFVLPPMPNS 115

Query: 122 PPLHLILHHPSFLS-RNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP 180
                 +  P  LS  ++P Q     GKL +L     N        +++  +   W+   
Sbjct: 116 ---FTKISSPHALSCASMPRQ-----GKLFVLGGGDVN-----RSAVVYTALTNRWSCIS 162

Query: 181 ELVTPRRWCAAGYSRGAVYVASG-IGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL--- 236
            +++PR +  +G   G +    G +G   + +    VE +D      N  W    +L   
Sbjct: 163 PMMSPRTYFVSGNVNGKIMAVGGSVGG--NGEATTEVESYD----PDNDTWTVVKKLPMV 216

Query: 237 ----KDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA 292
                     +E     GW        +    G VYD    TW +M  GM  GW G V+ 
Sbjct: 217 LAKYDSAVIGKEMCVTEGWAWPFMFPPM----GQVYDSDEGTWREMSGGMKEGWTG-VSV 271

Query: 293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR 331
           +  + L+ I E+     K     DD    V  + L+G +
Sbjct: 272 VIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEK 310

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 110/303 (36%), Gaps = 45/303 (14%)

Query: 40  QPLLPGLPDHIAHLCL------SHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKS 93
           +PL+PGLPD +A  CL      SHV      +VC  W  L  +     F +    F  K 
Sbjct: 51  EPLIPGLPDDVALNCLLRVPVQSHVSSK---SVCKRWHLLFGTKE--TFFAKRKEFGFKD 105

Query: 94  --------NSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSL 145
                   +  +  I     D  + TW  +P  P       +  H  F S ++P +    
Sbjct: 106 PWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDK---VCPH-GFRSVSMPRE---- 157

Query: 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIG 205
            G + +      + +  L   L +D +   WT   +++T R + A+G   G +Y A G  
Sbjct: 158 -GTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNA 216

Query: 206 SQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVN----- 259
           +  +  D A+ +   D         W     +     S    D     GKL +       
Sbjct: 217 ADLYELDCAEVLNPLD-------GNWRPVSNMVAHMAS---YDTAVLNGKLLVTEGWLWP 266

Query: 260 -VKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDW 318
                 G VYD   + W+ M  G+  GW G    + + +    +     +  YD V D W
Sbjct: 267 FFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSW 326

Query: 319 KEV 321
           + +
Sbjct: 327 ETI 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 23/178 (12%)

Query: 39  HQPLLPGLPDHIAHLC---LSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNS 95
            Q ++PGLPD +A  C   LSH +  +L  V   WR L+           Y+ +  ++  
Sbjct: 5   EQSIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGAD-------YSCYKARNGW 57

Query: 96  SSTPIHLFT---------FDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLS 146
           S + + + T         +DP +  W PLP       +    HH  F    +   L+ + 
Sbjct: 58  SGSWLFVLTERSKNQWVAYDPEADRWHPLPR---TRAVQDGWHHSGFACVCVSNCLLVIG 114

Query: 147 GKLILLAATTHNFNPALTRPLI-FDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASG 203
           G      ++  +  P +T+ ++ FDP  + W     + TPR   A     G VYVA G
Sbjct: 115 GCYAPSVSSFPHQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGG 172

Arabidopsis thaliana (taxid: 3702)

>sp|O80582|FBK46_ARATH F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2

 Score = 48.9 bits (115), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 110/285 (38%), Gaps = 50/285 (17%)

Query: 30  KAQDDDGDDHQPLLPGLPDHIAHLCLSHV---HPSILHNVCHSWRRLIYSPSFPP----- 81
           K +  D      L+PGLP  +A  CL  V     S + +VC SWR L+   SF       
Sbjct: 7   KKKGGDFQQCHELIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRC 66

Query: 82  -----FLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLS- 135
                 L L    +P   +S +       D   S  +  P     P   L +++ +  + 
Sbjct: 67  GKTELLLCLVQPLTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTW 126

Query: 136 --------RNLPV--QLVSL--SGKLILLAATTHNFNPALTRP----LIFDPICRTWTFG 179
                     +P+  + V L  +GK++L+      ++P   +P     + +   R W  G
Sbjct: 127 HRVAFPEEEQIPLFCECVVLQDAGKILLIGG----WDPETLQPTRDVYVLEFAGRKWRRG 182

Query: 180 PELVTPRRWCA-AGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD 238
             +   R + A A  S   VYVA G   Q   +  +S E +D+   E    W     + +
Sbjct: 183 APMKESRSFFACASVSPTKVYVAGGHDDQ--KNALRSAEVYDVEKDE----WSSVTPMTE 236

Query: 239 GRFSREAIDAVGWKGKLCLVNVKGAE--------GAVYDVVANTW 275
           GR   +   AVG   + C+++  G E        G +YD   ++W
Sbjct: 237 GRDECQGF-AVGMGLRFCVLSGYGTESQGRFRSDGEIYDPATDSW 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 93/259 (35%), Gaps = 40/259 (15%)

Query: 41  PLLPGLPDHIAHLCLSHV----HPSILHNVCHSWRRLIYSPSFPPFLSLYA-----LFSP 91
           PL+PGLPD +A  CL+ V     PS + +VC  WR ++ S  F     L       L+  
Sbjct: 38  PLIPGLPDDVAKQCLALVPRARFPS-MGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVL 96

Query: 92  KSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLIL 151
             N+          D +      LPP P                     ++V + GKL++
Sbjct: 97  TMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGF--------------KVVVVDGKLLV 142

Query: 152 LAATTHNFNPALTRP---LIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQF 208
           +A      N +L        +D    +W+   +L   R   A     G VYV  G G   
Sbjct: 143 IAGCCM-INGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVDG 201

Query: 209 SSDVAKSVE-----KWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGA 263
            S  +  V       W  +   +  RW       +G+     +  +G +    + N K  
Sbjct: 202 ESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGK-----LYVMGGRSNFTIGNSKLL 256

Query: 264 EGAVYDVVANTWDDMREGM 282
           +  VY+    +W   + G+
Sbjct: 257 D--VYNTQCGSWHGSKNGL 273

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
224106600	397	predicted protein [Populus trichocarpa]	0.963	0.939	0.578	1e-119
255582211	399	conserved hypothetical protein [Ricinus	0.927	0.899	0.584	1e-113
224120934	399	predicted protein [Populus trichocarpa]	0.968	0.939	0.565	1e-110
356495256	375	PREDICTED: F-box/kelch-repeat protein SK	0.912	0.941	0.583	1e-105
357484577	380	F-box/kelch-repeat protein SKIP25 [Medic	0.860	0.876	0.602	1e-102
224146126	379	predicted protein [Populus trichocarpa]	0.922	0.941	0.505	5e-99
449456923	375	PREDICTED: F-box/kelch-repeat protein SK	0.875	0.904	0.601	8e-98
15221685	395	F-box/kelch-repeat protein SKIP25 [Arabi	0.956	0.936	0.510	1e-93
297846538	385	F-box family protein [Arabidopsis lyrata	0.891	0.896	0.538	1e-93
6692128	446	T19E23.14 [Arabidopsis thaliana]	0.956	0.829	0.510	3e-93

>gi|224106600|ref|XP_002314220.1| predicted protein [Populus trichocarpa] gi|222850628|gb|EEE88175.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/396 (57%), Positives = 288/396 (72%), Gaps = 23/396 (5%)

Query: 9   SSKRQKLTQTLTTQPQAQDQDKAQDDDGDDH--QPLLPGLPDHIAHLCLSHVHPSILHNV 66
           +S +  +T T T  P  + Q      DG  H  QPL+PGLP+ IA LCLS VHPS L++V
Sbjct: 3   NSIQTSITDTTTENPTKRRQ---LITDGHRHLEQPLIPGLPNDIAQLCLSLVHPSTLYSV 59

Query: 67  CHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTP----IHLFTFDPVSSTWDPLPPPPPDP 122
           CHSWRRLIYSPSFPPF SLYA+ S  + + + P    I  F FDP+SS WD LPPPPPDP
Sbjct: 60  CHSWRRLIYSPSFPPFFSLYAVLSSTNTNHNLPDNNSIQFFNFDPISSRWDSLPPPPPDP 119

Query: 123 PLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL 182
           PLHLIL HPSF+SR+LP+Q +S S +LILLAAT+H+F+PAL+RPL+F+P+  +W FGP L
Sbjct: 120 PLHLILRHPSFISRDLPIQSISASYRLILLAATSHSFSPALSRPLVFNPLSGSWAFGPPL 179

Query: 183 VTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE------KNS----RWEK 232
            TPRRWCAAG + G VYVASGIGSQ+++DVAKS+EKWDL N +      +N     +W K
Sbjct: 180 ATPRRWCAAGSAHGTVYVASGIGSQYNTDVAKSLEKWDLQNQKAMISNIRNKTTTWKWVK 239

Query: 233 TGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGP 289
             ELK+GRFSR+AIDAVGW+GKLC+VN+KG    EG VYD   +TW+DM +GMV GWRGP
Sbjct: 240 VKELKNGRFSRDAIDAVGWRGKLCMVNMKGDAAKEGIVYDTEKDTWEDMPQGMVAGWRGP 299

Query: 290 VAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG 349
           VAAMDEEV+Y +DE    L KYD   D W+ +++S+ L GA+  AAGGGRVC +C     
Sbjct: 300 VAAMDEEVMYVVDEAKGVLRKYDPERDCWERIMESERLIGAQQIAAGGGRVCVICGGSTE 359

Query: 350 IVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSK 385
           +VV+DV A     ++VV+TP GFEA  +HILPR+S+
Sbjct: 360 LVVLDVVALPV-RLWVVETPPGFEAFRIHILPRISR 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582211|ref|XP_002531898.1| conserved hypothetical protein [Ricinus communis] gi|223528465|gb|EEF30497.1| conserved hypothetical protein [Ricinus communis]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/395 (58%), Positives = 281/395 (71%), Gaps = 36/395 (9%)

Query: 9   SSKRQKLTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCH 68
           ++KRQ+LT+    QP                  L+PGLPDH+A LCLS V PS+L++VCH
Sbjct: 14  TAKRQRLTRLHQQQPD-----------------LIPGLPDHVAQLCLSLVPPSLLYSVCH 56

Query: 69  SWRRLIYSPSFPPFLSLYALFSP----KSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPL 124
           SWRRLIYSP+FPPFLSLYA+ S     +    S  I  F FDP+SSTWD LPPPPPDPPL
Sbjct: 57  SWRRLIYSPAFPPFLSLYAVLSSINTDRYGDCSNSIKFFNFDPISSTWDLLPPPPPDPPL 116

Query: 125 HLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT 184
             I+ HPSF+SR+LP+Q V++SG LILLAATT NF PAL+RP IF+P+ R W+FGP L T
Sbjct: 117 RPIIRHPSFISRHLPIQSVTVSGHLILLAATTDNFYPALSRPFIFNPVSRRWSFGPPLTT 176

Query: 185 PRRWCAAG-YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSR---------WEKTG 234
           PRRWCAAG  +   VYVASGIGSQFS+D+AKSVEKW+ +  EK +R         WEK  
Sbjct: 177 PRRWCAAGAINNSTVYVASGIGSQFSADIAKSVEKWEFLRDEKRTRSSNQSCLWKWEKVK 236

Query: 235 ELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVA 291
            LKDGRFSR+AIDA+GW+GKLC+VNVKG    EG VYD   + W+DM  GM+ GW+GPVA
Sbjct: 237 GLKDGRFSRDAIDAIGWRGKLCMVNVKGDAAKEGLVYDTKKDLWEDMPIGMLAGWKGPVA 296

Query: 292 AMDEEVLYGIDENSCTLSKYDEVMDDWKEVV-KSDLLKGARHAAAGGGRVCAVCENGGGI 350
           AMDEEV+Y +DE    L KYD   D W+ ++ +S+  KGA+  AA GGRVC VCE G GI
Sbjct: 297 AMDEEVMYVVDEVKGALRKYDPSKDVWENIITESENFKGAQQIAAAGGRVCVVCEGGNGI 356

Query: 351 VVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSK 385
            VVDV AA    ++ +DTP GFEA++VHILPRMSK
Sbjct: 357 AVVDVVAAPV-RLWTMDTPPGFEAVAVHILPRMSK 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120934|ref|XP_002330862.1| predicted protein [Populus trichocarpa] gi|222872684|gb|EEF09815.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/396 (56%), Positives = 281/396 (70%), Gaps = 21/396 (5%)

Query: 9   SSKRQKLTQTLTTQPQAQDQDKAQDDDGDDH--QPLLPGLPDHIAHLCLSHVHPSILHNV 66
           +S +   T T T  P A+ + K   D   +H  QPL+PGL DH+A L LS VHPS L+ V
Sbjct: 3   NSIQTSTTDTATKHPSAK-RRKLTTDQHQNHQEQPLIPGLTDHVAQLSLSLVHPSTLYPV 61

Query: 67  CHSWRRLIYSPSFPPFLSLYALFSPKSN----SSSTPIHLFTFDPVSSTWDPLPPPPPDP 122
           CHSWRRLIYS SFPPFLSLYA+ S  +     S++ PI  F FDP+SS WD LPPPPPDP
Sbjct: 62  CHSWRRLIYSLSFPPFLSLYAVLSSTNINHRLSNNNPIQSFNFDPISSKWDSLPPPPPDP 121

Query: 123 PLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL 182
           PLHL+L HP F+SR+LP+Q +S  G+LIL+AAT+HNF+PAL+RPL+F+P+   W FGP L
Sbjct: 122 PLHLLLRHPCFISRDLPIQSISACGRLILIAATSHNFSPALSRPLVFNPLSGVWGFGPPL 181

Query: 183 VTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM----------NGEKNSRWEK 232
            TPRRWCAAG ++  VYVASGIGSQF++DV+KSVEKWDL           N     +WEK
Sbjct: 182 TTPRRWCAAGSAKDTVYVASGIGSQFNTDVSKSVEKWDLQSKNVGISTIANKTITWKWEK 241

Query: 233 TGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGP 289
              LKDGRF R+AIDAVGW+GKLC+VN+KG    EG VYD   + W++M EGM+ GWRGP
Sbjct: 242 VKGLKDGRFCRDAIDAVGWRGKLCMVNMKGDAPKEGLVYDTEKDAWENMPEGMLAGWRGP 301

Query: 290 VAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG 349
           VA+MDEE ++ +DE    L KYD   D W+ +++S+ L GA+  AAGGGRVC +      
Sbjct: 302 VASMDEETMFVVDEARGVLRKYDPEKDYWEHMMESERLVGAQKIAAGGGRVCVIRGCSTE 361

Query: 350 IVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSK 385
           IVV+DV AA    ++VV TP GFEAL++HILPRMS+
Sbjct: 362 IVVLDV-AALPVKLWVVKTPPGFEALAIHILPRMSR 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495256|ref|XP_003516495.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Glycine max]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/367 (58%), Positives = 262/367 (71%), Gaps = 14/367 (3%)

Query: 20  TTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSF 79
           TT+ Q Q+Q   Q ++    QPL+PGLPDHIA LCLS ++P +L ++ HSWRRLIYSPSF
Sbjct: 16  TTKRQKQEQHIHQQEE----QPLIPGLPDHIAQLCLSSINPCLLFSISHSWRRLIYSPSF 71

Query: 80  PPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLP 139
           PPF SLYA+ S   + SS  I   TFDP+S+TW PLPP PP   L L  H  SFLSRNL 
Sbjct: 72  PPFFSLYAILS--HSHSSAVIQFHTFDPISATWLPLPPHPPLHHLLLRRHP-SFLSRNLS 128

Query: 140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVY 199
           VQ VS + +L+LLAATTHN +PAL RPLIF P+ +TW+FGP L TPRRWCA G     VY
Sbjct: 129 VQSVSAANRLVLLAATTHNLSPALPRPLIFHPLTKTWSFGPTLSTPRRWCALGSLGPTVY 188

Query: 200 VASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVN 259
           VASGIGS FS  VA+S++KW+L N   N+ WEK  ELKDGRFSREAIDAVGWK KLC+VN
Sbjct: 189 VASGIGSHFSIHVARSLQKWNLQN--PNAVWEKKTELKDGRFSREAIDAVGWKQKLCMVN 246

Query: 260 VKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD 316
           VKG    EG VYDV  + W +M EGM+ GWRGPVAAM+EEV+Y +DE    L +Y E  D
Sbjct: 247 VKGDAAKEGVVYDVAEDAWKEMPEGMLHGWRGPVAAMEEEVMYVVDEAKGVLRRYVEEED 306

Query: 317 DWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALS 376
            W+E+++++ LKGA    A  G++C V  +  GI VVDV AA +P I+ V  P GFE ++
Sbjct: 307 SWEEILENERLKGAEKIVAWRGKLCVVSAS-SGISVVDV-AAPSPRIWSVRLPEGFEPVT 364

Query: 377 VHILPRM 383
           VHILPR+
Sbjct: 365 VHILPRI 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484577|ref|XP_003612576.1| F-box/kelch-repeat protein SKIP25 [Medicago truncatula] gi|355513911|gb|AES95534.1| F-box/kelch-repeat protein SKIP25 [Medicago truncatula]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/345 (60%), Positives = 251/345 (72%), Gaps = 12/345 (3%)

Query: 42  LLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIH 101
           L+PGLPDHIA LCLS ++PS+L  VCHSWRRLIYSPSFPPF SLYA+ SP  +  S  I 
Sbjct: 41  LIPGLPDHIAQLCLSSINPSLLFKVCHSWRRLIYSPSFPPFFSLYAILSPPKSHHSHSIQ 100

Query: 102 LFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNP 161
              FDP+S+TW  L  PPP P  H++LHHPSFLSRNL VQ +S+S  LILLAATTHN  P
Sbjct: 101 FHNFDPISNTWKIL--PPPPPLHHILLHHPSFLSRNLSVQSISVSDNLILLAATTHNLTP 158

Query: 162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL 221
           AL+ PLIF+P  + W+ GP L  PRRWCA G S G VYVASGIGS FS DVAKS+EKWD 
Sbjct: 159 ALSHPLIFNP-SQGWSVGPALTNPRRWCALGTSEGMVYVASGIGSHFSVDVAKSIEKWDP 217

Query: 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDM 278
           +N   +  WEK  ++KDGRFSREA+DAVGW+GKL +VNVKG    EG VYDV  +TW +M
Sbjct: 218 IN---DPIWEKKTDMKDGRFSREAVDAVGWRGKLYMVNVKGDAAKEGVVYDVEEDTWKEM 274

Query: 279 REGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG 338
            EGM+ G+RGPVAAM+EEV+Y +DE    LS+Y+   D W+++ +S  LKGA    A  G
Sbjct: 275 PEGMLLGFRGPVAAMEEEVMYVVDEAKGILSRYNSEDDIWEKIFESQRLKGAEQMVAKQG 334

Query: 339 RVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRM 383
           R+C V  +  GI VVDV  A  P I VV+ P GFEA++VH+LPRM
Sbjct: 335 RICVV--STAGISVVDV-VAVPPRISVVELPEGFEAVAVHVLPRM 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146126|ref|XP_002325889.1| predicted protein [Populus trichocarpa] gi|222862764|gb|EEF00271.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 188/372 (50%), Positives = 244/372 (65%), Gaps = 15/372 (4%)

Query: 27  DQDKAQDDDGDD--HQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLS 84
           +  K + ++  D  ++ LLPGLPDH++  CL+ + PSIL +V H+WRRL+YS  F PF S
Sbjct: 6   NNKKTRKNELPDTLNETLLPGLPDHLSQNCLTSLPPSILFSVSHAWRRLLYSSLFAPFFS 65

Query: 85  LYALFSPKSNSSSTP---------IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLS 135
           LYAL S  S+  +T          I L +FDP+SS W  +P  P DPPLHL+  HPSFLS
Sbjct: 66  LYALLSASSSYPTTKDNQVDIIRSIELMSFDPISSLWRSVPSIPKDPPLHLLHRHPSFLS 125

Query: 136 RNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSR 195
           R L VQ +++S  L+L++ TTH F PAL+RPL+F P  + W FGP   +PRRWCA G   
Sbjct: 126 RKLSVQSLTVSNHLVLISGTTHQFVPALSRPLVFHPESKKWFFGPPFTSPRRWCATGSVH 185

Query: 196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKL 255
           G VYVASG+G ++S +VA+S+E+WD      + RWE    LKDGRFSRE I A+G+KGKL
Sbjct: 186 GRVYVASGVGPRYSGEVARSMEQWDFSQQGNHWRWENMAPLKDGRFSREPIGAIGYKGKL 245

Query: 256 CLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYD 312
            +VNVKG    EG VYDV  N W+DM  GM+ GW GP A M+E+ +Y ++E +  LS+YD
Sbjct: 246 YMVNVKGNAPKEGLVYDVEENQWNDMPRGMLAGWNGPAATMNEDAIYVVNEVTGALSEYD 305

Query: 313 EVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGF 372
              D WK+V++   LK A   AAG GRVC VC NG  IVVVDV A  A   +VV+ P G 
Sbjct: 306 CKNDCWKKVIELPELKLAEQIAAGRGRVCVVCANGETIVVVDVMARPA-RFWVVEPPQGQ 364

Query: 373 EALSVHILPRMS 384
           +   +HILPRMS
Sbjct: 365 QVAGLHILPRMS 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456923|ref|XP_004146198.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Cucumis sativus] gi|449521327|ref|XP_004167681.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Cucumis sativus]

 Score =  363 bits (932), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 210/349 (60%), Positives = 257/349 (73%), Gaps = 10/349 (2%)

Query: 40  QPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTP 99
            PLLPGLPDH+A  CLSHV PS+L +V  SWRRL+YSPSFPPF SLYA      +SSS  
Sbjct: 28  SPLLPGLPDHVAQFCLSHVPPSLLFSVSRSWRRLLYSPSFPPFSSLYA----LLSSSSNS 83

Query: 100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF 159
           +  F FDP+SS W PLPPPP  P  HL++HHPSFLSR+LPVQ +++SG L+LLAATT+N 
Sbjct: 84  LDFFNFDPISSKWSPLPPPPNSPSSHLLIHHPSFLSRHLPVQSLTVSGHLLLLAATTYNL 143

Query: 160 NPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW 219
            PAL RPL+F P   +W   P L TPRRWCAAG   G+VYVASGIGS FS+DVA+SVE+W
Sbjct: 144 LPALPRPLLFSPFSNSWRLAPPLPTPRRWCAAGALHGSVYVASGIGSFFSTDVARSVERW 203

Query: 220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWD 276
           D  +   +  WEK   LKDG+FSR+AIDAVGWKGKLC+VNVKG    EG VYD+  + W+
Sbjct: 204 DFKSNGADG-WEKVSGLKDGKFSRDAIDAVGWKGKLCMVNVKGHALKEGLVYDLEKDEWE 262

Query: 277 DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG 336
           +M EGM+ GWRGPVAAMDE+ +Y +DE S +L +YD   D W+EV++S+ LKGA   AAG
Sbjct: 263 EMPEGMIEGWRGPVAAMDEKDMYVVDEISGSLRRYDSEKDFWEEVMESNRLKGAVQMAAG 322

Query: 337 GGRVCAVCENG-GGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMS 384
           GGRVC VC    G IVVVDV  + A  ++V  TP G E ++VH+LPRM+
Sbjct: 323 GGRVCVVCGGSRGEIVVVDVVTSPA-RLWVEPTPPGTEVVAVHVLPRMN 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221685|ref|NP_174420.1| F-box/kelch-repeat protein SKIP25 [Arabidopsis thaliana] gi|75151119|sp|Q8GX29.1|SKI25_ARATH RecName: Full=F-box/kelch-repeat protein SKIP25; AltName: Full=SKP1-interacting partner 25 gi|26451966|dbj|BAC43075.1| unknown protein [Arabidopsis thaliana] gi|28950983|gb|AAO63415.1| At1g31350 [Arabidopsis thaliana] gi|332193224|gb|AEE31345.1| F-box/kelch-repeat protein SKIP25 [Arabidopsis thaliana]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/390 (51%), Positives = 264/390 (67%), Gaps = 20/390 (5%)

Query: 11  KRQKLTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVH-PSILHNVCHS 69
           +R+ ++ T    P A+   + +   G+++  L+ GLPDHI+ +CLS VH PS+L  VC  
Sbjct: 7   RRESMSTTAAESPPAK---RRRTVTGNENSALIEGLPDHISEICLSLVHRPSLLSAVCTR 63

Query: 70  WRRLIYSPSFPPFLSLYALFSPKSNSS---STPIHLFTFDPVSSTWDPLPPPPPDPPLHL 126
           WRRL+YSP FP F SLYALF   ++ +   +  +    F+PVSS W PLPPPPPDPPLH 
Sbjct: 64  WRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHR 123

Query: 127 ILH-HPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP 185
           IL+ HPSF+S NLP+Q VS +GKLIL+A +    +PA++ PLIFDPI  +W+ GP + +P
Sbjct: 124 ILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSP 183

Query: 186 RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS---RWEKTGELKDGRFS 242
           RRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL    +N+    WEK  +++D RFS
Sbjct: 184 RRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFS 243

Query: 243 REAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY 299
           REAIDAVG++ KL +VNVKG    EGA+YDVV + W+ M E M+ GWRGPVAAM+EE+LY
Sbjct: 244 REAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWEPMPEEMLVGWRGPVAAMEEEILY 303

Query: 300 GIDENSCTLSKYDEVMDDWK----EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV 355
            +DE   T+ KYD+   +W+         ++LKGA    A  G++C V  + G IVVVDV
Sbjct: 304 SVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGATQVTADSGKLCVVTGD-GKIVVVDV 362

Query: 356 KAAAAPTIFVVDTPLGFEALSVHILPRMSK 385
            A  A  I+ V+ P G E +SVH+LPRMS+
Sbjct: 363 AAEPA-KIWNVEIPDGLEPVSVHVLPRMSQ 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846538|ref|XP_002891150.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336992|gb|EFH67409.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 198/368 (53%), Positives = 256/368 (69%), Gaps = 23/368 (6%)

Query: 36  GDDHQPLLPGLPDHIAHLCLSHVH-PSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSN 94
           G+++  L+ GLPDHI+ +CLS V+ PS+L  VC  WRRL+YSP FP F SLYALF    +
Sbjct: 19  GNENSALIEGLPDHISEICLSKVNRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFV---D 75

Query: 95  SSSTP------IHLFTFDPVSSTWDPLPPPPPDPPLHLILH-HPSFLSRNLPVQLVSLSG 147
           S+S P      +    F+PVS  W PLPPPPPD PLH IL+ HPSF+S NLP+Q VS +G
Sbjct: 76  STSDPGRVNPSVRFMCFNPVSPKWYPLPPPPPDLPLHRILYRHPSFISFNLPIQCVSAAG 135

Query: 148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQ 207
           KLIL+A +    +PA++ PLIFDPI  +W+ GP++ +PRRWCA G   GA+Y+ASGI SQ
Sbjct: 136 KLILIAGSNQQLSPAISHPLIFDPISSSWSSGPQIGSPRRWCATGACDGAIYIASGISSQ 195

Query: 208 FSSDVAKSVEKWDLMNGEKNSR---WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-- 262
           FSS VAKS+EK DL +  +N+R   WEK  +++D RFSREAIDAVG++ KL +VNVKG  
Sbjct: 196 FSSTVAKSIEKLDLTDQNRNNRRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDA 255

Query: 263 -AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEV 321
             EGA+YDVV + W+ M E M+ GWRGPVAAM+EE+LY +DE   T+ KYD+   +W+EV
Sbjct: 256 IKEGAIYDVVKDDWEAMPEEMLVGWRGPVAAMEEEILYSVDERRGTVRKYDDENREWREV 315

Query: 322 VKSD----LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSV 377
              D    LLKGA    A  G++C V  + G IVV DV A  A  I+ V+ P G E +SV
Sbjct: 316 AVVDGGEELLKGATQVTADSGKLCVVTVD-GKIVVADVVAEPA-KIWNVEIPDGLEPVSV 373

Query: 378 HILPRMSK 385
           H+LPRMS+
Sbjct: 374 HVLPRMSQ 381

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6692128|gb|AAF24593.1|AC007654_9 T19E23.14 [Arabidopsis thaliana]

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 199/390 (51%), Positives = 264/390 (67%), Gaps = 20/390 (5%)

Query: 11  KRQKLTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVH-PSILHNVCHS 69
           +R+ ++ T    P A+   + +   G+++  L+ GLPDHI+ +CLS VH PS+L  VC  
Sbjct: 58  RRESMSTTAAESPPAK---RRRTVTGNENSALIEGLPDHISEICLSLVHRPSLLSAVCTR 114

Query: 70  WRRLIYSPSFPPFLSLYALFSPKSNSS---STPIHLFTFDPVSSTWDPLPPPPPDPPLHL 126
           WRRL+YSP FP F SLYALF   ++ +   +  +    F+PVSS W PLPPPPPDPPLH 
Sbjct: 115 WRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHR 174

Query: 127 ILH-HPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP 185
           IL+ HPSF+S NLP+Q VS +GKLIL+A +    +PA++ PLIFDPI  +W+ GP + +P
Sbjct: 175 ILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSP 234

Query: 186 RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS---RWEKTGELKDGRFS 242
           RRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL    +N+    WEK  +++D RFS
Sbjct: 235 RRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFS 294

Query: 243 REAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY 299
           REAIDAVG++ KL +VNVKG    EGA+YDVV + W+ M E M+ GWRGPVAAM+EE+LY
Sbjct: 295 REAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWEPMPEEMLVGWRGPVAAMEEEILY 354

Query: 300 GIDENSCTLSKYDEVMDDWK----EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV 355
            +DE   T+ KYD+   +W+         ++LKGA    A  G++C V  + G IVVVDV
Sbjct: 355 SVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGATQVTADSGKLCVVTGD-GKIVVVDV 413

Query: 356 KAAAAPTIFVVDTPLGFEALSVHILPRMSK 385
            A  A  I+ V+ P G E +SVH+LPRMS+
Sbjct: 414 AAEPA-KIWNVEIPDGLEPVSVHVLPRMSQ 442

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2197540	395	KUF1 "KAR-UP F-box 1" [Arabido	0.863	0.845	0.484	4.3e-77
TAIR|locus:2035696	434	AT1G55270 "AT1G55270" [Arabido	0.441	0.394	0.239	1.4e-06
TAIR|locus:2046683	372	AFR "ATTENUATED FAR-RED RESPON	0.635	0.661	0.246	4.8e-05

TAIR|locus:2197540 KUF1 "KAR-UP F-box 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 170/351 (48%), Positives = 220/351 (62%)

Query:    50 IAHLCLSHVH-PSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSS--TP-IHLFTF 105
             I+ +CLS VH PS+L  VC  WRRL+YSP FP F SLYALF   ++ +    P +    F
Sbjct:    43 ISEICLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCF 102

Query:   106 DPVSSTWXXXXXXXXXXXXXXXXXXX-SFLSRNLPVQLVSLSGKLILLAATTHNFNPALT 164
             +PVSS W                    SF+S NLP+Q VS +GKLIL+A +    +PA++
Sbjct:   103 NPVSSKWYPLPPPPPDPPLHRILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAIS 162

Query:   165 RPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG 224
              PLIFDPI  +W+ GP + +PRRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL   
Sbjct:   163 HPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQ 222

Query:   225 EKNSR---WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDM 278
              +N+    WEK  +++D RFSREAIDAVG++ KL +VNVKG    EGA+YDVV + W+ M
Sbjct:   223 NRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWEPM 282

Query:   279 REGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVK----SDLLKXXXXXX 334
              E M+ GWRGPVAAM+EE+LY +DE   T+ KYD+   +W+EVV      ++LK      
Sbjct:   283 PEEMLVGWRGPVAAMEEEILYSVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGATQVT 342

Query:   335 XXXXXXXXXXENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHILPRMSK 385
                        +G  IVVVDV A  A  I+ V+ P G E +SVH+LPRMS+
Sbjct:   343 ADSGKLCVVTGDGK-IVVVDVAAEPAK-IWNVEIPDGLEPVSVHVLPRMSQ 391

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2035696 AT1G55270 "AT1G55270" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 44/184 (23%), Positives = 75/184 (40%)

Query:   145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGI 204
             LSG  + L         ++ R + ++     W   P+++  R +         +YVA G 
Sbjct:   176 LSGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGE 235

Query:   205 GSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAE 264
                    + +S E +D     KN RW    ++         +  V +  K  L  +   +
Sbjct:   236 CEGIQRTL-RSAEVYD---PNKN-RWSFIADMSTAMVP---LIGVVYDKKWFLKGLGSHQ 287

Query:   265 ---GAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGID-ENSCTLSKYDEVMDDWKE 320
                   YD   N+W  + +GMV GWR P  +++   LYG+D  + C L  +DE  D W +
Sbjct:   288 LVMSEAYDPEVNSWSPVSDGMVAGWRNPCTSLNGR-LYGLDCRDGCKLRVFDESTDSWNK 346

Query:   321 VVKS 324
              + S
Sbjct:   347 FMDS 350

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 72/292 (24%), Positives = 111/292 (38%)

Query:    50 IAHLCLSHV-HP--SILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFD 106
             IA LCL  + +P  ++  +V  SW + I +P F        LFS +S S S+P +LF F 
Sbjct:    36 IAELCLLRLPYPYHALYRSVSSSWNKTITNPRF--------LFSKQSLSISSP-YLFVFA 86

Query:   107 PVSST----WXXXXXXXXXXXXXXXXXXXSFLSRNLPVQLVSLS----GKLILLAATTHN 158
                ST    W                   SF   + P  L   S    GKL +L     N
Sbjct:    87 FNKSTARIQWQSLDLASGRWFVLPPMPN-SFTKISSPHALSCASMPRQGKLFVLGGGDVN 145

Query:   159 FNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASG-IGSQFSSDVAKSVE 217
              +      +++  +   W+    +++PR +  +G   G +    G +G   + +    VE
Sbjct:   146 RSA-----VVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGG--NGEATTEVE 198

Query:   218 KWDLMNGEKNSRWEKTGELK------DGR-FSREAIDAVGWKGKLCLVNVKGAEGAVYDV 270
              +D      N  W    +L       D     +E     GW        +    G VYD 
Sbjct:   199 SYD----PDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPM----GQVYDS 250

Query:   271 VANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-CTLSKYDEVMDDWKEV 321
                TW +M  GM  GW G V+ +  + L+ I E+    +  Y    D W+ V
Sbjct:   251 DEGTWREMSGGMKEGWTG-VSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYV 301


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      387       315   0.00082  116 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  239 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.70u 0.10s 22.80t   Elapsed:  00:00:01
  Total cpu time:  22.70u 0.10s 22.80t   Elapsed:  00:00:01
  Start:  Fri May 10 16:27:03 2013   End:  Fri May 10 16:27:04 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GX29	SKI25_ARATH	No assigned EC number	0.5102	0.9560	0.9367	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
PHA02713	557	hypothetical protein; Provisional	99.98
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.97
PLN02193	470	nitrile-specifier protein	99.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.97
PHA02790	480	Kelch-like protein; Provisional	99.97
PHA03098	534	kelch-like protein; Provisional	99.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.95
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.95
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.87
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.86
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.82
KOG1230	521	consensus Protein containing repeated kelch motifs	99.78
KOG1230	521	consensus Protein containing repeated kelch motifs	99.76
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.73
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.53
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.5
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.19
PF13964	50	Kelch_6: Kelch motif	99.16
PF13964	50	Kelch_6: Kelch motif	99.02
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.83
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.8
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.8
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.77
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.76
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.73
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.69
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.66
smart00612	47	Kelch Kelch domain.	98.61
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.6
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.59
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.55
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.44
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.42
smart00612	47	Kelch Kelch domain.	98.33
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.33
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.31
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	98.24
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.18
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.05
PLN02772	398	guanylate kinase	97.99
PLN02772	398	guanylate kinase	97.95
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.87
PF13854	42	Kelch_5: Kelch motif	97.87
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.86
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.85
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.63
PF13854	42	Kelch_5: Kelch motif	97.62
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.54
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.4
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.32
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.05
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.87
KOG2055	514	consensus WD40 repeat protein [General function pr	96.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.8
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.79
KOG0296	399	consensus Angio-associated migratory cell protein	96.78
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.76
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.71
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.64
PRK11028	330	6-phosphogluconolactonase; Provisional	96.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.63
PRK11028	330	6-phosphogluconolactonase; Provisional	96.58
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.55
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.53
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	96.49
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.48
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.37
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.29
KOG2055	514	consensus WD40 repeat protein [General function pr	96.12
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.09
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.08
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.07
PTZ00421	493	coronin; Provisional	96.0
PLN00181	793	protein SPA1-RELATED; Provisional	95.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	95.73
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.17
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.13
PF03089	337	RAG2: Recombination activating protein 2; InterPro	95.07
PRK00178	430	tolB translocation protein TolB; Provisional	95.04
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	95.04
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.04
PTZ00420	568	coronin; Provisional	94.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	94.85
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.79
KOG0266	456	consensus WD40 repeat-containing protein [General	94.74
PRK04792	448	tolB translocation protein TolB; Provisional	94.74
PLN00181	793	protein SPA1-RELATED; Provisional	94.7
KOG0286	343	consensus G-protein beta subunit [General function	94.59
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	94.57
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.28
PRK13684	334	Ycf48-like protein; Provisional	94.25
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	94.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	94.01
PRK05137	435	tolB translocation protein TolB; Provisional	93.98
KOG0315	311	consensus G-protein beta subunit-like protein (con	93.95
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.73
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.31
KOG0649	325	consensus WD40 repeat protein [General function pr	93.25
PRK04792	448	tolB translocation protein TolB; Provisional	93.1
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	93.08
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.03
KOG0315	311	consensus G-protein beta subunit-like protein (con	92.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	92.72
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.56
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.55
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	92.52
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	92.34
KOG0278	334	consensus Serine/threonine kinase receptor-associa	92.25
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	91.37
PRK05137	435	tolB translocation protein TolB; Provisional	91.19
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.98
KOG0286	343	consensus G-protein beta subunit [General function	90.84
PF03089	337	RAG2: Recombination activating protein 2; InterPro	90.69
smart00284	255	OLF Olfactomedin-like domains.	90.52
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	90.51
PRK04043	419	tolB translocation protein TolB; Provisional	90.51
PRK00178	430	tolB translocation protein TolB; Provisional	90.48
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.47
PRK04922	433	tolB translocation protein TolB; Provisional	90.32
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	90.25
KOG0296	399	consensus Angio-associated migratory cell protein	90.19
PRK02889	427	tolB translocation protein TolB; Provisional	89.68
smart00284	255	OLF Olfactomedin-like domains.	89.64
KOG0289	506	consensus mRNA splicing factor [General function p	89.41
KOG0647	347	consensus mRNA export protein (contains WD40 repea	89.26
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	89.06
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.97
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.93
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	88.7
KOG0293	519	consensus WD40 repeat-containing protein [Function	88.67
PTZ00421	493	coronin; Provisional	88.25
KOG0645	312	consensus WD40 repeat protein [General function pr	88.08
KOG2048	691	consensus WD40 repeat protein [General function pr	88.08
PRK03629	429	tolB translocation protein TolB; Provisional	87.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	87.86
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.83
KOG0266	456	consensus WD40 repeat-containing protein [General	87.65
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	87.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	87.36
PRK04922	433	tolB translocation protein TolB; Provisional	86.69
PRK04043	419	tolB translocation protein TolB; Provisional	86.6
KOG0278	334	consensus Serine/threonine kinase receptor-associa	86.54
KOG0294	362	consensus WD40 repeat-containing protein [Function	86.49
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	86.3
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	86.05
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.01
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.83
KOG0316	307	consensus Conserved WD40 repeat-containing protein	85.7
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	85.06
COG4946	668	Uncharacterized protein related to the periplasmic	85.04
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	84.99
KOG0318	603	consensus WD40 repeat stress protein/actin interac	84.95
PRK02889	427	tolB translocation protein TolB; Provisional	84.74
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	84.24
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.47
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	82.7
KOG3881	412	consensus Uncharacterized conserved protein [Funct	82.3
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	81.84
COG3391	381	Uncharacterized conserved protein [Function unknow	81.65
KOG0279	315	consensus G protein beta subunit-like protein [Sig	81.37
KOG0289	506	consensus mRNA splicing factor [General function p	81.12
KOG0293	519	consensus WD40 repeat-containing protein [Function	80.75

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=6.9e-37  Score=302.64  Aligned_cols=245  Identities=11%  Similarity=0.188  Sum_probs=208.5

Q ss_pred             EEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC
Q 044903          101 HLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP  180 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~  180 (387)
                      .+.+|||.+++|..++++|..               +.+++++++++.||++||.... ....+.+++|||.+++|.+++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~---------------r~~~~~a~l~~~IYviGG~~~~-~~~~~~v~~Yd~~~n~W~~~~  336 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNH---------------IINYASAIVDNEIIIAGGYNFN-NPSLNKVYKINIENKIHVELP  336 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcc---------------ccceEEEEECCEEEEEcCCCCC-CCccceEEEEECCCCeEeeCC
Confidence            468899999999999998862               3357888899999999996421 235678999999999999999


Q ss_pred             CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEee
Q 044903          181 ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV  260 (387)
Q Consensus       181 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg  260 (387)
                      +|+.+|..+++++++++||++||...   ....+++++||+.+++    |..+++||.++..   +++++++|+||++||
T Consensus       337 ~m~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~----W~~~~~mp~~r~~---~~~~~~~g~IYviGG  406 (557)
T PHA02713        337 PMIKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDK----WKMLPDMPIALSS---YGMCVLDQYIYIIGG  406 (557)
T ss_pred             CCcchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCe----EEECCCCCccccc---ccEEEECCEEEEEeC
Confidence            99999999999999999999999854   2356789999999999    9999999987654   788899999999998


Q ss_pred             eC-----------------------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC------CeEEEE
Q 044903          261 KG-----------------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS------CTLSKY  311 (387)
Q Consensus       261 ~~-----------------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~------~~v~~y  311 (387)
                      ..                       ..+++|||++++|+.+++ ++.++..+++++.+|+||++||.+      ..+.+|
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y  485 (557)
T PHA02713        407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY  485 (557)
T ss_pred             CCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence            63                       358999999999999987 666666788889999999999853      247899


Q ss_pred             eCCC-CceEEccccccccCceeEEEeCCeEEEEecCCc--eEEEEEecCCCCCceeEEcCCCCceeeE
Q 044903          312 DEVM-DDWKEVVKSDLLKGARHAAAGGGRVCAVCENGG--GIVVVDVKAAAAPTIFVVDTPLGFEALS  376 (387)
Q Consensus       312 d~~~-~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~--~i~v~d~~~~~~~~~W~~~~~~~~~~~~  376 (387)
                      ||++ ++|+.+.++|..+..++++.++|+||++||.++  .+.+||+.+.    +|+...|..-++.-
T Consensus       486 dp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~----~W~~~~~~~~~~~~  549 (557)
T PHA02713        486 NTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY----EWNHICHQHSNSYI  549 (557)
T ss_pred             cCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc----cccchhhhcCCceE
Confidence            9999 899999999998888999999999999998654  6899999987    89986665444433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=298.43  Aligned_cols=292  Identities=20%  Similarity=0.264  Sum_probs=237.3

Q ss_pred             CCCChHHHHHHHhhhcC-h---hhHH---HhhHhhhhhccCC------CCCCc----ceEEEeecCCCCCCCCCeEEEEE
Q 044903           43 LPGLPDHIAHLCLSHVH-P---SILH---NVCHSWRRLIYSP------SFPPF----LSLYALFSPKSNSSSTPIHLFTF  105 (387)
Q Consensus        43 ~~~LP~dl~~~iL~rLP-~---~~~r---~Vck~W~~li~s~------~f~~~----~~l~~~~~~~~~~~~~~~~~~~~  105 (387)
                      +|-||...+.++....+ +   ..++   .-.|.|+.+-...      .-...    -.|+++++... .......+..|
T Consensus       228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~-~~~~~~~ve~y  306 (571)
T KOG4441|consen  228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNR-QGQSLRSVECY  306 (571)
T ss_pred             ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCC-CCcccceeEEe
Confidence            36677777777766665 1   1111   2233555554321      11111    25777776411 12334558899


Q ss_pred             eCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCC
Q 044903          106 DPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP  185 (387)
Q Consensus       106 d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~  185 (387)
                      ||.++.|..+++|+.+               |..+++++++|.||++||.+. .....+.+++|||.+++|..+|+|+.+
T Consensus       307 d~~~~~w~~~a~m~~~---------------r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~  370 (571)
T KOG4441|consen  307 DPKTNEWSSLAPMPSP---------------RCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTK  370 (571)
T ss_pred             cCCcCcEeecCCCCcc---------------cccccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCc
Confidence            9999999999999962               445889999999999999873 255788999999999999999999999


Q ss_pred             ceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---
Q 044903          186 RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---  262 (387)
Q Consensus       186 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---  262 (387)
                      |..++.++++|.||++||.+.   ...+.++|.||+.+++    |..+++|+.++.   .+++++++|+||++||..   
T Consensus       371 R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~----W~~va~m~~~r~---~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  371 RSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNK----WTPVAPMLTRRS---GHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             cccceeEEECCEEEEEecccc---ccccccEEEecCCCCc----ccccCCCCccee---eeEEEEECCEEEEEcCcCCCc
Confidence            999999999999999999975   4678899999999999    999999997654   499999999999999965   


Q ss_pred             ---CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC-----eEEEEeCCCCceEEccccccccCceeEE
Q 044903          263 ---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-----TLSKYDEVMDDWKEVVKSDLLKGARHAA  334 (387)
Q Consensus       263 ---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~-----~v~~yd~~~~~W~~v~~~~~~~~~~~~~  334 (387)
                         ..+++|||.+++|+.+++ |...+.+..+++.+++||++||.++     .+.+||+++++|+.+..+...+...+++
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~  519 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV  519 (571)
T ss_pred             cccceEEEEcCCCCceeecCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence               789999999999999998 6777777889999999999999664     4899999999999999899999999999


Q ss_pred             EeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903          335 AGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       335 ~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~  366 (387)
                      .++++||++||.+     ..+.+||+.+.    .|+.
T Consensus       520 ~~~~~ly~vGG~~~~~~l~~ve~ydp~~d----~W~~  552 (571)
T KOG4441|consen  520 VLGGKLYAVGGFDGNNNLNTVECYDPETD----TWTE  552 (571)
T ss_pred             EECCEEEEEecccCccccceeEEcCCCCC----ceee
Confidence            9999999999853     57899999976    9997

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.3e-31  Score=251.54  Aligned_cols=256  Identities=16%  Similarity=0.223  Sum_probs=190.7

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|++++...........+++||+.+++|..+++++..|..           .+.++++++++++||++||...  ....
T Consensus        34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~-----------~~~~~~~~~~~~~iyv~GG~~~--~~~~  100 (341)
T PLN02153         34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI-----------SCLGVRMVAVGTKLYIFGGRDE--KREF  100 (341)
T ss_pred             EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC-----------ccCceEEEEECCEEEEECCCCC--CCcc
Confidence            58888874110011123599999999999998876542211           1346788999999999999754  3456


Q ss_pred             CccEEEeCCCCceeeCCCC-----CCCceeeeEEeeCCEEEEEecCCCCC---CCCCCceEEEEeCCCCccccCeEEcCC
Q 044903          164 TRPLIFDPICRTWTFGPEL-----VTPRRWCAAGYSRGAVYVASGIGSQF---SSDVAKSVEKWDLMNGEKNSRWEKTGE  235 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~v~vyd~~t~~~~~~W~~~~~  235 (387)
                      +++++||+.+++|+++++|     |.+|..+++++.+++|||+||.....   .....+++++||+.+++    |..+++
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~l~~  176 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK----WVQLPD  176 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe----EeeCCC
Confidence            7899999999999999887     78899999999999999999985421   11235689999999999    999998


Q ss_pred             CCCCcccccceeEEEECCEEEEEeeeC-------------CeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEE
Q 044903          236 LKDGRFSREAIDAVGWKGKLCLVNVKG-------------AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYG  300 (387)
Q Consensus       236 ~~~~~~~~~~~~~v~~~g~lyv~gg~~-------------~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~  300 (387)
                      +..+...|..+.+++++++||++||..             ..+++||+++++|+.++.  .++..+..+++++.+++||+
T Consensus       177 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv  256 (341)
T PLN02153        177 PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII  256 (341)
T ss_pred             CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE
Confidence            764434456688899999999998742             579999999999999874  24556667788889999999


Q ss_pred             EeCCC--------------CeEEEEeCCCCceEEccc-----cccccCcee-EE-EeCCeEEEEecCC------ceEEEE
Q 044903          301 IDENS--------------CTLSKYDEVMDDWKEVVK-----SDLLKGARH-AA-AGGGRVCAVCENG------GGIVVV  353 (387)
Q Consensus       301 ~g~~~--------------~~v~~yd~~~~~W~~v~~-----~~~~~~~~~-~~-~~~~~l~v~gg~~------~~i~v~  353 (387)
                      +||..              +++++||+++++|+.+..     +|+.+..++ ++ ..+++|||+||..      .+++.|
T Consensus       257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~  336 (341)
T PLN02153        257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFY  336 (341)
T ss_pred             ECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEE
Confidence            99852              269999999999999863     233332222 33 3345899999863      345555


Q ss_pred             Eec
Q 044903          354 DVK  356 (387)
Q Consensus       354 d~~  356 (387)
                      ++.
T Consensus       337 ~~~  339 (341)
T PLN02153        337 AVN  339 (341)
T ss_pred             ecc
Confidence            543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.9e-32  Score=267.82  Aligned_cols=241  Identities=22%  Similarity=0.326  Sum_probs=199.3

Q ss_pred             hhHhhhhhccCCCCCCc-------ceEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCcccccc
Q 044903           66 VCHSWRRLIYSPSFPPF-------LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNL  138 (387)
Q Consensus        66 Vck~W~~li~s~~f~~~-------~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~  138 (387)
                      ..+.|..+..-+.=...       ..+|+.++... .......++.|||.+++|..+++|...               |.
T Consensus       309 ~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~---------------R~  372 (571)
T KOG4441|consen  309 KTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTK---------------RS  372 (571)
T ss_pred             CcCcEeecCCCCcccccccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCc---------------cc
Confidence            34467777665532211       26999988411 112345699999999999999999973               66


Q ss_pred             ceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEE
Q 044903          139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      ++++++++|.||++||.++  ....+.+.+|||.+++|..+++|+.+|..+++++++++||++||.+.  ....++++++
T Consensus       373 ~~~v~~l~g~iYavGG~dg--~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~--~~~~l~sve~  448 (571)
T KOG4441|consen  373 DFGVAVLDGKLYAVGGFDG--EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG--SSNCLNSVEC  448 (571)
T ss_pred             cceeEEECCEEEEEecccc--ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC--CccccceEEE
Confidence            7999999999999999875  56778999999999999999999999999999999999999999876  2347899999


Q ss_pred             EeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCcEEEE
Q 044903          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                      |||.+++    |+.+++|+.+|..   +.+++++++||++||+.     ..++.|||++++|..+.+ +...+.+..+++
T Consensus       449 YDP~t~~----W~~~~~M~~~R~~---~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~  520 (571)
T KOG4441|consen  449 YDPETNT----WTLIAPMNTRRSG---FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVV  520 (571)
T ss_pred             EcCCCCc----eeecCCccccccc---ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc-CccccccccEEE
Confidence            9999999    9999999988754   88999999999999976     568999999999999966 677777788889


Q ss_pred             eCCeEEEEeCCCC-----eEEEEeCCCCceEEccccccccCceeEE
Q 044903          294 DEEVLYGIDENSC-----TLSKYDEVMDDWKEVVKSDLLKGARHAA  334 (387)
Q Consensus       294 ~~g~ly~~g~~~~-----~v~~yd~~~~~W~~v~~~~~~~~~~~~~  334 (387)
                      .++++|++||.++     .+..|||++++|+....+...+...+++
T Consensus       521 ~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~  566 (571)
T KOG4441|consen  521 LGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRGGAGVA  566 (571)
T ss_pred             ECCEEEEEecccCccccceeEEcCCCCCceeeCCCccccccCcceE
Confidence            9999999998654     5999999999999998844444443333

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=266.87  Aligned_cols=233  Identities=18%  Similarity=0.249  Sum_probs=196.2

Q ss_pred             EEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCC
Q 044903          102 LFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE  181 (387)
Q Consensus       102 ~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~  181 (387)
                      ...|++..++|..++..+.                +..+++++.++.||++||.... ....+++++||+.+++|..+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~  328 (534)
T PHA03098        266 YITNYSPLSEINTIIDIHY----------------VYCFGSVVLNNVIYFIGGMNKN-NLSVNSVVSYDTKTKSWNKVPE  328 (534)
T ss_pred             eeecchhhhhcccccCccc----------------cccceEEEECCEEEEECCCcCC-CCeeccEEEEeCCCCeeeECCC
Confidence            4567888888888765443                2236788899999999997542 2345689999999999999999


Q ss_pred             CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeee
Q 044903          182 LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK  261 (387)
Q Consensus       182 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~  261 (387)
                      |+.+|..++++.++++|||+||...   ....+++++||+.+++    |+.+++||.++.   .++++.++|+||++||.
T Consensus       329 ~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~lp~~r~---~~~~~~~~~~iYv~GG~  398 (534)
T PHA03098        329 LIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESK----WREEPPLIFPRY---NPCVVNVNNLIYVIGGI  398 (534)
T ss_pred             CCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCc----eeeCCCcCcCCc---cceEEEECCEEEEECCc
Confidence            9999999999999999999999864   3456789999999999    999999997764   48889999999999995


Q ss_pred             C------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--------CeEEEEeCCCCceEEccccccc
Q 044903          262 G------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------CTLSKYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       262 ~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--------~~v~~yd~~~~~W~~v~~~~~~  327 (387)
                      .      ..+++||+.+++|+.+++ ++.++.++++++.+++||++||..        ..+++||+++++|+.+..++..
T Consensus       399 ~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~  477 (534)
T PHA03098        399 SKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP  477 (534)
T ss_pred             CCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc
Confidence            3      679999999999999886 566666788888999999999843        2499999999999999988777


Q ss_pred             cCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903          328 KGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       328 ~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~  366 (387)
                      +..++++..+++|||+||..     ..+++||+.++    .|+.
T Consensus       478 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~  517 (534)
T PHA03098        478 RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN----TWTL  517 (534)
T ss_pred             cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC----EEEe
Confidence            77777888899999999853     57899999976    8996

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.1e-30  Score=245.37  Aligned_cols=236  Identities=13%  Similarity=0.159  Sum_probs=182.8

Q ss_pred             CCCCcccCCCCCCC-CCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-CC
Q 044903          108 VSSTWDPLPPPPPD-PPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TP  185 (387)
Q Consensus       108 ~~~~W~~l~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-~~  185 (387)
                      ....|..+...... |.            +|.+|++++++++||++||.........+++++||+.+++|++++++. .+
T Consensus         5 ~~~~W~~~~~~~~~~P~------------pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p   72 (341)
T PLN02153          5 LQGGWIKVEQKGGKGPG------------PRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVP   72 (341)
T ss_pred             cCCeEEEecCCCCCCCC------------CCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCC
Confidence            45678888763211 11            155688899999999999975422334578999999999999998774 34


Q ss_pred             ce---eeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC--cccccceeEEEECCEEEEEee
Q 044903          186 RR---WCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG--RFSREAIDAVGWKGKLCLVNV  260 (387)
Q Consensus       186 r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~--~~~~~~~~~v~~~g~lyv~gg  260 (387)
                      |.   .+++++++++|||+||...   ....+.+++||+.+++    |+.+++|+..  ...|..+++++++++||++||
T Consensus        73 ~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~----W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG  145 (341)
T PLN02153         73 RISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNE----WTFLTKLDEEGGPEARTFHSMASDENHVYVFGG  145 (341)
T ss_pred             CCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCE----EEEeccCCCCCCCCCceeeEEEEECCEEEEECC
Confidence            43   5778899999999999865   2346789999999999    9999877210  133455889999999999999


Q ss_pred             eC-----------CeEEEEECCCCceeecccc--ccCCCCCcEEEEeCCeEEEEeCC-------------CCeEEEEeCC
Q 044903          261 KG-----------AEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDEN-------------SCTLSKYDEV  314 (387)
Q Consensus       261 ~~-----------~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~-------------~~~v~~yd~~  314 (387)
                      ..           .++++||+++++|+.++..  .+..+.++++++.+++||+++|.             ...+++||++
T Consensus       146 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~  225 (341)
T PLN02153        146 VSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA  225 (341)
T ss_pred             ccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC
Confidence            64           3689999999999998753  22455567788889999999763             2469999999


Q ss_pred             CCceEEccc---cccccCceeEEEeCCeEEEEecCC--------------ceEEEEEecCCCCCceeEE
Q 044903          315 MDDWKEVVK---SDLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       315 ~~~W~~v~~---~~~~~~~~~~~~~~~~l~v~gg~~--------------~~i~v~d~~~~~~~~~W~~  366 (387)
                      +++|+++..   +|..+..++++.++++|||+||..              +.+++||+.+.    .|+.
T Consensus       226 ~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~----~W~~  290 (341)
T PLN02153        226 SGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL----VWEK  290 (341)
T ss_pred             CCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc----EEEe
Confidence            999999874   455666788899999999999841              37899999976    8985

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=3.7e-31  Score=258.25  Aligned_cols=202  Identities=12%  Similarity=0.164  Sum_probs=175.9

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~  221 (387)
                      ++..++.||++||...  ....+.++.|||.+++|..+++|+.+|..+++++++++||++||...      ..+++.||+
T Consensus       267 ~~~~~~~lyviGG~~~--~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~------~~sve~ydp  338 (480)
T PHA02790        267 STHVGEVVYLIGGWMN--NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN------PTSVERWFH  338 (480)
T ss_pred             eEEECCEEEEEcCCCC--CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC------CCceEEEEC
Confidence            4458999999999754  34567899999999999999999999999999999999999999743      246899999


Q ss_pred             CCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeE
Q 044903          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVL  298 (387)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~l  298 (387)
                      .+++    |..+++||.++.   .+++++++|+||++||..   ..+++|||++++|+.+++ ++..+..+++++.+|+|
T Consensus       339 ~~n~----W~~~~~l~~~r~---~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~I  410 (480)
T PHA02790        339 GDAA----WVNMPSLLKPRC---NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRL  410 (480)
T ss_pred             CCCe----EEECCCCCCCCc---ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEE
Confidence            9999    999999997764   488999999999999975   568999999999999987 56666677888899999


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~  366 (387)
                      |++||   .+.+||+++++|+.+.+++..+..++++.++|+|||+||.+     ..+.+||+.++    .|++
T Consensus       411 Yv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~----~W~~  476 (480)
T PHA02790        411 FLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY----SWNI  476 (480)
T ss_pred             EEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC----eEEe
Confidence            99985   47889999999999999888888889999999999999852     46899999976    8986

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=5.4e-30  Score=249.44  Aligned_cols=242  Identities=14%  Similarity=0.186  Sum_probs=190.5

Q ss_pred             EEEEeCCC----CCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCcee
Q 044903          102 LFTFDPVS----STWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWT  177 (387)
Q Consensus       102 ~~~~d~~~----~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~  177 (387)
                      .++++|.+    ++|..+.+....|.            +|.+|+++++++.||++||.........+++++||+.+++|+
T Consensus       139 ~y~~~~~~~~~~~~W~~~~~~~~~P~------------pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~  206 (470)
T PLN02193        139 AYISLPSTPKLLGKWIKVEQKGEGPG------------LRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS  206 (470)
T ss_pred             EEEecCCChhhhceEEEcccCCCCCC------------CccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEE
Confidence            55668755    78999876533221            266789999999999999975422234467999999999999


Q ss_pred             eCCCC---CC-CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC
Q 044903          178 FGPEL---VT-PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG  253 (387)
Q Consensus       178 ~l~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g  253 (387)
                      +++++   |. .|..+++++++++|||+||...   ....+++++||+.+++    |+.+++++....+|..|.++++++
T Consensus       207 ~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~---~~~~ndv~~yD~~t~~----W~~l~~~~~~P~~R~~h~~~~~~~  279 (470)
T PLN02193        207 ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA---SRQYNGFYSFDTTTNE----WKLLTPVEEGPTPRSFHSMAADEE  279 (470)
T ss_pred             eCCCCCCCCCCcccceEEEEECCEEEEECCCCC---CCCCccEEEEECCCCE----EEEcCcCCCCCCCccceEEEEECC
Confidence            98754   33 2457788899999999999864   2456789999999999    999998833223445588899999


Q ss_pred             EEEEEeeeC-----CeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEEeCCC----CeEEEEeCCCCceEEcc
Q 044903          254 KLCLVNVKG-----AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENS----CTLSKYDEVMDDWKEVV  322 (387)
Q Consensus       254 ~lyv~gg~~-----~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g~~~----~~v~~yd~~~~~W~~v~  322 (387)
                      +||++||..     .++++||+.+++|+.++.  .++..+.++++++.+++||+++|.+    .++++||+++++|+.+.
T Consensus       280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~  359 (470)
T PLN02193        280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVE  359 (470)
T ss_pred             EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEec
Confidence            999999975     678999999999998864  2344556778888899999999854    46999999999999987


Q ss_pred             cc---ccccCceeEEEeCCeEEEEecCC--------------ceEEEEEecCCCCCceeEE
Q 044903          323 KS---DLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       323 ~~---~~~~~~~~~~~~~~~l~v~gg~~--------------~~i~v~d~~~~~~~~~W~~  366 (387)
                      .+   |..+..++++.++++|||+||..              +.+++||+.+.    .|+.
T Consensus       360 ~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~----~W~~  416 (470)
T PLN02193        360 TFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL----QWER  416 (470)
T ss_pred             cCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC----EEEE
Confidence            53   55667788899999999999842              35899999976    8995

>PHA02713 hypothetical protein; Provisional

Probab=99.98  E-value=3.5e-31  Score=262.07  Aligned_cols=215  Identities=10%  Similarity=0.160  Sum_probs=178.4

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|++++... .......+++|||.++.|..+++|+..               |..+++++++|+||++||.+.  ....
T Consensus       305 ~IYviGG~~~-~~~~~~~v~~Yd~~~n~W~~~~~m~~~---------------R~~~~~~~~~g~IYviGG~~~--~~~~  366 (557)
T PHA02713        305 EIIIAGGYNF-NNPSLNKVYKINIENKIHVELPPMIKN---------------RCRFSLAVIDDTIYAIGGQNG--TNVE  366 (557)
T ss_pred             EEEEEcCCCC-CCCccceEEEEECCCCeEeeCCCCcch---------------hhceeEEEECCEEEEECCcCC--CCCC
Confidence            5888876310 011234589999999999999998862               556889999999999999754  3346


Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCC---------------CCCCCceEEEEeCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQF---------------SSDVAKSVEKWDLMNGEKNS  228 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---------------~~~~~~~v~vyd~~t~~~~~  228 (387)
                      +.+++|||.+++|+.+++||.+|..+++++++++|||+||.....               .....+++++|||.+++   
T Consensus       367 ~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---  443 (557)
T PHA02713        367 RTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---  443 (557)
T ss_pred             ceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---
Confidence            789999999999999999999999999999999999999975311               01135789999999999   


Q ss_pred             CeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEECCC-CceeeccccccCCCCCcEEEEeCCeEEEE
Q 044903          229 RWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVA-NTWDDMREGMVRGWRGPVAAMDEEVLYGI  301 (387)
Q Consensus       229 ~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~~-~~W~~~~~~~~~~~~~~~~~~~~g~ly~~  301 (387)
                       |+.+++|+.++..   +.+++++|+||++||..      ..+++|||++ ++|+.+++ ++..+....+++.+|+||++
T Consensus       444 -W~~v~~m~~~r~~---~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~-m~~~r~~~~~~~~~~~iyv~  518 (557)
T PHA02713        444 -WETLPNFWTGTIR---PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT-TESRLSALHTILHDNTIMML  518 (557)
T ss_pred             -EeecCCCCccccc---CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc-cCcccccceeEEECCEEEEE
Confidence             9999999977644   78899999999999864      3579999999 89999987 67777788889999999999


Q ss_pred             eCCCC--eEEEEeCCCCceEEcccc
Q 044903          302 DENSC--TLSKYDEVMDDWKEVVKS  324 (387)
Q Consensus       302 g~~~~--~v~~yd~~~~~W~~v~~~  324 (387)
                      ||.++  .+.+||+++++|+.+.+.
T Consensus       519 Gg~~~~~~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        519 HCYESYMLQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             eeecceeehhhcCcccccccchhhh
Confidence            99776  699999999999987653

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.97  E-value=7e-30  Score=238.17  Aligned_cols=220  Identities=14%  Similarity=0.174  Sum_probs=174.1

Q ss_pred             EEEEEe-CCC-CCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCce--
Q 044903          101 HLFTFD-PVS-STWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW--  176 (387)
Q Consensus       101 ~~~~~d-~~~-~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W--  176 (387)
                      .+++|+ +.. .+|..++++|.+               +..+.++++++.||++||...  ....+++++||+.+++|  
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~---------------r~~~~~~~~~~~lyviGG~~~--~~~~~~v~~~d~~~~~w~~  102 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYE---------------AAYGASVSVENGIYYIGGSNS--SERFSSVYRITLDESKEEL  102 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCcc---------------ccceEEEEECCEEEEEcCCCC--CCCceeEEEEEEcCCceee
Confidence            366674 433 379999988862               223567788999999999754  34567899999999998  


Q ss_pred             --eeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE
Q 044903          177 --TFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK  254 (387)
Q Consensus       177 --~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~  254 (387)
                        +.+++||.+|..+++++++++|||+||...   ....+++++||+.+++    |+.+++||...  |..+.+++++++
T Consensus       103 ~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~p~~~--r~~~~~~~~~~~  173 (323)
T TIGR03548       103 ICETIGNLPFTFENGSACYKDGTLYVGGGNRN---GKPSNKSYLFNLETQE----WFELPDFPGEP--RVQPVCVKLQNE  173 (323)
T ss_pred             eeeEcCCCCcCccCceEEEECCEEEEEeCcCC---CccCceEEEEcCCCCC----eeECCCCCCCC--CCcceEEEECCE
Confidence              789999999999999999999999999743   3346789999999999    99999887422  344777889999


Q ss_pred             EEEEeeeC----CeEEEEECCCCceeecccc----ccCCCCC-cEEEEeCCeEEEEeCCC--------------------
Q 044903          255 LCLVNVKG----AEGAVYDVVANTWDDMREG----MVRGWRG-PVAAMDEEVLYGIDENS--------------------  305 (387)
Q Consensus       255 lyv~gg~~----~~i~~yD~~~~~W~~~~~~----~~~~~~~-~~~~~~~g~ly~~g~~~--------------------  305 (387)
                      ||++||..    .++++||+++++|+.++..    .+....+ .++++.+++||++||.+                    
T Consensus       174 iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  253 (323)
T TIGR03548       174 LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLK  253 (323)
T ss_pred             EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhh
Confidence            99999975    4678999999999998753    1222222 33445578999999854                    


Q ss_pred             -----------------CeEEEEeCCCCceEEcccccc-ccCceeEEEeCCeEEEEecC
Q 044903          306 -----------------CTLSKYDEVMDDWKEVVKSDL-LKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       306 -----------------~~v~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~~~l~v~gg~  346 (387)
                                       ..+.+||+++++|+.+..+|. .+..++++.++++||++||.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             hhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence                             359999999999999987763 55667889999999999885

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=99.97  E-value=2.1e-29  Score=245.30  Aligned_cols=252  Identities=17%  Similarity=0.239  Sum_probs=189.1

Q ss_pred             eEEEeecCCCCCCCCC-eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCC
Q 044903           84 SLYALFSPKSNSSSTP-IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPA  162 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~-~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~  162 (387)
                      .+|++++... ..... ..+++||+.+++|..++++...|+.           .+.++++++++++||++||...  ...
T Consensus       177 ~iyv~GG~~~-~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~-----------~~~~~~~v~~~~~lYvfGG~~~--~~~  242 (470)
T PLN02193        177 KIYSFGGEFT-PNQPIDKHLYVFDLETRTWSISPATGDVPHL-----------SCLGVRMVSIGSTLYVFGGRDA--SRQ  242 (470)
T ss_pred             EEEEECCcCC-CCCCeeCcEEEEECCCCEEEeCCCCCCCCCC-----------cccceEEEEECCEEEEECCCCC--CCC
Confidence            6888887310 01112 3489999999999987754322211           1446788899999999999764  345


Q ss_pred             CCccEEEeCCCCceeeCCCC---CCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          163 LTRPLIFDPICRTWTFGPEL---VTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       163 ~~~~~vydp~t~~W~~l~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      .+++++||+.+++|++++++   |.+|..+++++.+++|||+||...   ......+++||+.+++    |+.++.....
T Consensus       243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~yd~~t~~----W~~~~~~~~~  315 (470)
T PLN02193        243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDSYNIVDKK----WFHCSTPGDS  315 (470)
T ss_pred             CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEEEECCCCE----EEeCCCCCCC
Confidence            78999999999999999888   789999999999999999999865   2356789999999999    9998753222


Q ss_pred             cccccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeecccc--ccCCCCCcEEEEeCCeEEEEeCCC--------
Q 044903          240 RFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENS--------  305 (387)
Q Consensus       240 ~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~~--------  305 (387)
                      ...|..+.++++++++|++||..    .++++||+++++|+.++..  .+..+..+++++.+++||++||..        
T Consensus       316 ~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~  395 (470)
T PLN02193        316 FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHV  395 (470)
T ss_pred             CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcccccc
Confidence            23345588889999999999865    7899999999999998742  355556778888999999999842        


Q ss_pred             ------CeEEEEeCCCCceEEcccc------ccccCcee--EEEe-C-CeEEEEecCC------ceEEEEEec
Q 044903          306 ------CTLSKYDEVMDDWKEVVKS------DLLKGARH--AAAG-G-GRVCAVCENG------GGIVVVDVK  356 (387)
Q Consensus       306 ------~~v~~yd~~~~~W~~v~~~------~~~~~~~~--~~~~-~-~~l~v~gg~~------~~i~v~d~~  356 (387)
                            .++++||+++++|+.+..+      |..|..++  ++.+ + +.|+++||.+      ++++.++++
T Consensus       396 ~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~  468 (470)
T PLN02193        396 GPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID  468 (470)
T ss_pred             CccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence                  2589999999999998643      33444332  2223 3 4599998863      456666665

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.97  E-value=2e-29  Score=237.52  Aligned_cols=237  Identities=16%  Similarity=0.171  Sum_probs=177.9

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeC--CCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC--
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDP--VSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF--  159 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~--~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~--  159 (387)
                      .+|+.++.      ....+++||+  .+++|..++++|..+              |..+.+++++++||++||.....  
T Consensus        19 ~vyv~GG~------~~~~~~~~d~~~~~~~W~~l~~~p~~~--------------R~~~~~~~~~~~iYv~GG~~~~~~~   78 (346)
T TIGR03547        19 KVYVGLGS------AGTSWYKLDLKKPSKGWQKIADFPGGP--------------RNQAVAAAIDGKLYVFGGIGKANSE   78 (346)
T ss_pred             EEEEEccc------cCCeeEEEECCCCCCCceECCCCCCCC--------------cccceEEEECCEEEEEeCCCCCCCC
Confidence            57888763      2246888885  568899999988411              44578889999999999975321  


Q ss_pred             --CCCCCccEEEeCCCCceeeCC-CCCCCceeeeEE-eeCCEEEEEecCCCCC-----------CC--------------
Q 044903          160 --NPALTRPLIFDPICRTWTFGP-ELVTPRRWCAAG-YSRGAVYVASGIGSQF-----------SS--------------  210 (387)
Q Consensus       160 --~~~~~~~~vydp~t~~W~~l~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~-----------~~--------------  210 (387)
                        ....+++++|||.+++|++++ ++|.+|..++++ +++++|||+||.....           +.              
T Consensus        79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T TIGR03547        79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS  158 (346)
T ss_pred             CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence              124678999999999999997 456666555555 6899999999975310           00              


Q ss_pred             ------CCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEE--CCCCcee
Q 044903          211 ------DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYD--VVANTWD  276 (387)
Q Consensus       211 ------~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD--~~~~~W~  276 (387)
                            ...+.+++||+.+++    |+.+++||..+  +..+.+++++++||++||..      ..++.||  +++++|+
T Consensus       159 ~~~~~~~~~~~v~~YDp~t~~----W~~~~~~p~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~  232 (346)
T TIGR03547       159 QPPEDYFWNKNVLSYDPSTNQ----WRNLGENPFLG--TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWN  232 (346)
T ss_pred             CChhHcCccceEEEEECCCCc----eeECccCCCCc--CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceee
Confidence                  013689999999999    99999998531  23477888999999999974      2355565  5677999


Q ss_pred             eccccccCCC-------CCcEEEEeCCeEEEEeCCC----------------------CeEEEEeCCCCceEEccccccc
Q 044903          277 DMREGMVRGW-------RGPVAAMDEEVLYGIDENS----------------------CTLSKYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       277 ~~~~~~~~~~-------~~~~~~~~~g~ly~~g~~~----------------------~~v~~yd~~~~~W~~v~~~~~~  327 (387)
                      .++.+ +..+       .++++++.+++||++||..                      ..+.+||+++++|+.+..+|..
T Consensus       233 ~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~  311 (346)
T TIGR03547       233 KLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG  311 (346)
T ss_pred             ecCCC-CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC
Confidence            99863 3321       2334667899999999843                      1478999999999999998887


Q ss_pred             cCceeEEEeCCeEEEEecCC
Q 044903          328 KGARHAAAGGGRVCAVCENG  347 (387)
Q Consensus       328 ~~~~~~~~~~~~l~v~gg~~  347 (387)
                      +..++++.++|+|||+||..
T Consensus       312 ~~~~~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       312 LAYGVSVSWNNGVLLIGGEN  331 (346)
T ss_pred             ceeeEEEEcCCEEEEEeccC
Confidence            77777888999999999864

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.97  E-value=9.2e-30  Score=215.67  Aligned_cols=255  Identities=15%  Similarity=0.210  Sum_probs=204.1

Q ss_pred             eEEEeecCCCC---CCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCC
Q 044903           84 SLYALFSPKSN---SSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFN  160 (387)
Q Consensus        84 ~l~~~~~~~~~---~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~  160 (387)
                      .+|.|++-...   .....+.++++|-.+-+|..+|+--.+...+..+  |..-..|+||.++.+++++|+.||.++. .
T Consensus        25 riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~y--p~VPyqRYGHtvV~y~d~~yvWGGRND~-e  101 (392)
T KOG4693|consen   25 RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPY--PAVPYQRYGHTVVEYQDKAYVWGGRNDD-E  101 (392)
T ss_pred             eEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCC--CccchhhcCceEEEEcceEEEEcCccCc-c
Confidence            57777764322   2345677999999999999998722110010000  1112358999999999999999997653 5


Q ss_pred             CCCCccEEEeCCCCceeeC---CCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903          161 PALTRPLIFDPICRTWTFG---PELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       161 ~~~~~~~vydp~t~~W~~l---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~  237 (387)
                      ...+-++.|||.|++|.+.   .-+|.+|..++++++++.+|++||+.+. .....++++++|..|-+    |+.+....
T Consensus       102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~-a~~FS~d~h~ld~~Tmt----Wr~~~Tkg  176 (392)
T KOG4693|consen  102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED-AQRFSQDTHVLDFATMT----WREMHTKG  176 (392)
T ss_pred             cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH-HHhhhccceeEecccee----eeehhccC
Confidence            5778899999999999984   3467899999999999999999999653 23456789999999999    99998877


Q ss_pred             CCcccccceeEEEECCEEEEEeeeC--------------CeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEE
Q 044903          238 DGRFSREAIDAVGWKGKLCLVNVKG--------------AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGI  301 (387)
Q Consensus       238 ~~~~~~~~~~~v~~~g~lyv~gg~~--------------~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~  301 (387)
                      .|..-|+.|+++++++.+|++||.+              ..|.++|+.++.|...+.  ..|.+++.+++.+.++++|++
T Consensus       177 ~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F  256 (392)
T KOG4693|consen  177 DPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF  256 (392)
T ss_pred             CCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEe
Confidence            7766688999999999999999976              678999999999998763  357788899999999999999


Q ss_pred             eCCC-------CeEEEEeCCCCceEEccc---cccccCceeEEEeCCeEEEEecC
Q 044903          302 DENS-------CTLSKYDEVMDDWKEVVK---SDLLKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       302 g~~~-------~~v~~yd~~~~~W~~v~~---~~~~~~~~~~~~~~~~l~v~gg~  346 (387)
                      ||..       .+++.|||++..|+.|..   -|..+...+++..++|+|+|||.
T Consensus       257 GGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT  311 (392)
T KOG4693|consen  257 GGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT  311 (392)
T ss_pred             cccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence            9865       369999999999999863   46677777888999999999884

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.97  E-value=2.3e-28  Score=232.23  Aligned_cols=248  Identities=15%  Similarity=0.185  Sum_probs=182.9

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCC--CCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC--
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPV--SSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF--  159 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~--  159 (387)
                      .+|++++.      ....+++||+.  +++|..++++|..|              +.++.++++++.||++||.....  
T Consensus        40 ~iyv~gG~------~~~~~~~~d~~~~~~~W~~l~~~p~~~--------------r~~~~~v~~~~~IYV~GG~~~~~~~   99 (376)
T PRK14131         40 TVYVGLGS------AGTSWYKLDLNAPSKGWTKIAAFPGGP--------------REQAVAAFIDGKLYVFGGIGKTNSE   99 (376)
T ss_pred             EEEEEeCC------CCCeEEEEECCCCCCCeEECCcCCCCC--------------cccceEEEECCEEEEEcCCCCCCCC
Confidence            68887763      22347888876  47899999887421              44578889999999999975311  


Q ss_pred             --CCCCCccEEEeCCCCceeeCCC-CCCCceeeeEEe-eCCEEEEEecCCCC-CC-------------------------
Q 044903          160 --NPALTRPLIFDPICRTWTFGPE-LVTPRRWCAAGY-SRGAVYVASGIGSQ-FS-------------------------  209 (387)
Q Consensus       160 --~~~~~~~~vydp~t~~W~~l~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~-~~-------------------------  209 (387)
                        ....+++++||+.+++|+++++ +|.++..+++++ .+++|||+||.... +.                         
T Consensus       100 ~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~  179 (376)
T PRK14131        100 GSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD  179 (376)
T ss_pred             CceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence              1235789999999999999986 355665566555 79999999997531 00                         


Q ss_pred             -----CCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeE--EEEECCCCcee
Q 044903          210 -----SDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEG--AVYDVVANTWD  276 (387)
Q Consensus       210 -----~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i--~~yD~~~~~W~  276 (387)
                           ....+.+++||+.+++    |+.++++|.++  +..++++.++++||++||..      ..+  ..||+++++|+
T Consensus       180 ~~~~~~~~~~~v~~YD~~t~~----W~~~~~~p~~~--~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~  253 (376)
T PRK14131        180 KKPEDYFFNKEVLSYDPSTNQ----WKNAGESPFLG--TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ  253 (376)
T ss_pred             CChhhcCcCceEEEEECCCCe----eeECCcCCCCC--CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCccee
Confidence                 0124689999999999    99999988532  23477888999999999963      222  34578899999


Q ss_pred             eccccccCCC--------CCcEEEEeCCeEEEEeCCCC----------------------eEEEEeCCCCceEEcccccc
Q 044903          277 DMREGMVRGW--------RGPVAAMDEEVLYGIDENSC----------------------TLSKYDEVMDDWKEVVKSDL  326 (387)
Q Consensus       277 ~~~~~~~~~~--------~~~~~~~~~g~ly~~g~~~~----------------------~v~~yd~~~~~W~~v~~~~~  326 (387)
                      .++.. +..+        .+..+++.+++||++||...                      .+.+||+++++|+.+..+|.
T Consensus       254 ~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~  332 (376)
T PRK14131        254 KLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ  332 (376)
T ss_pred             ecCCC-CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC
Confidence            98863 3221        12224677899999998431                      25689999999999998888


Q ss_pred             ccCceeEEEeCCeEEEEecCC------ceEEEEEecCC
Q 044903          327 LKGARHAAAGGGRVCAVCENG------GGIVVVDVKAA  358 (387)
Q Consensus       327 ~~~~~~~~~~~~~l~v~gg~~------~~i~v~d~~~~  358 (387)
                      .+..++++.++|+|||+||..      ..+++|++..+
T Consensus       333 ~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~  370 (376)
T PRK14131        333 GLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGK  370 (376)
T ss_pred             CccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence            777778899999999999852      36777877754

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=5.1e-29  Score=243.26  Aligned_cols=200  Identities=18%  Similarity=0.219  Sum_probs=167.4

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|++++..  .......++.|||.+++|..+++|+.+               +..+++++.+++||++||...     .
T Consensus       273 ~lyviGG~~--~~~~~~~v~~Ydp~~~~W~~~~~m~~~---------------r~~~~~v~~~~~iYviGG~~~-----~  330 (480)
T PHA02790        273 VVYLIGGWM--NNEIHNNAIAVNYISNNWIPIPPMNSP---------------RLYASGVPANNKLYVVGGLPN-----P  330 (480)
T ss_pred             EEEEEcCCC--CCCcCCeEEEEECCCCEEEECCCCCch---------------hhcceEEEECCEEEEECCcCC-----C
Confidence            477777631  112234588999999999999998862               334678889999999999642     2


Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      +.++.|||.+++|..+++||.+|..+++++++|+|||+||...     ....+++|||.+++    |+.+++|+.++.. 
T Consensus       331 ~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~~~~----W~~~~~m~~~r~~-  400 (480)
T PHA02790        331 TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-----TDTTTEYLLPNHDQ----WQFGPSTYYPHYK-  400 (480)
T ss_pred             CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-----CCccEEEEeCCCCE----EEeCCCCCCcccc-
Confidence            5689999999999999999999999999999999999999753     13579999999999    9999999977654 


Q ss_pred             cceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCce
Q 044903          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~-----~~v~~yd~~~~~W  318 (387)
                        +.+++++|+||++||   ..++||+++++|+.+++ ++..+..+++++.+|+||++||.+     ..+.+||+++++|
T Consensus       401 --~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        401 --SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             --ceEEEECCEEEEECC---ceEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence              788899999999998   46999999999999987 566677788899999999999853     3599999999999


Q ss_pred             EEc
Q 044903          319 KEV  321 (387)
Q Consensus       319 ~~v  321 (387)
                      +..
T Consensus       475 ~~~  477 (480)
T PHA02790        475 NIW  477 (480)
T ss_pred             Eec
Confidence            864

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=1.4e-28  Score=244.99  Aligned_cols=237  Identities=15%  Similarity=0.269  Sum_probs=187.9

Q ss_pred             hhHhhhhhccCCC-C--CCc---ceEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccc
Q 044903           66 VCHSWRRLIYSPS-F--PPF---LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLP  139 (387)
Q Consensus        66 Vck~W~~li~s~~-f--~~~---~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~  139 (387)
                      ..++|+.+...+. .  ...   ..+|++++... .......++.||+.+++|..+++++.+               |.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~---------------R~~  335 (534)
T PHA03098        272 PLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNK-NNLSVNSVVSYDTKTKSWNKVPELIYP---------------RKN  335 (534)
T ss_pred             hhhhcccccCccccccceEEEECCEEEEECCCcC-CCCeeccEEEEeCCCCeeeECCCCCcc---------------ccc
Confidence            3567777654441 1  111   25888886311 111223589999999999999988752               445


Q ss_pred             eeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      +++++.+++||++||...  ....+++++|||.+++|+.+++||.+|..++++.++++|||+||...  .....+.+++|
T Consensus       336 ~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~v~~y  411 (534)
T PHA03098        336 PGVTVFNNRIYVIGGIYN--SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK--NDELLKTVECF  411 (534)
T ss_pred             ceEEEECCEEEEEeCCCC--CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC--CCcccceEEEE
Confidence            788899999999999763  34567899999999999999999999999999999999999999754  23346889999


Q ss_pred             eCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC--------CeEEEEECCCCceeeccccccCCCCCcEE
Q 044903          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--------AEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                      |+.+++    |+.++++|.++.   .+++++++++||++||..        ..+++||+++++|+.++. ++..+..+++
T Consensus       412 d~~t~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~  483 (534)
T PHA03098        412 SLNTNK----WSKGSPLPISHY---GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASL  483 (534)
T ss_pred             eCCCCe----eeecCCCCcccc---CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceE
Confidence            999999    999999997764   378899999999999964        348999999999999986 4455556777


Q ss_pred             EEeCCeEEEEeCCC-----CeEEEEeCCCCceEEccccccccCc
Q 044903          292 AMDEEVLYGIDENS-----CTLSKYDEVMDDWKEVVKSDLLKGA  330 (387)
Q Consensus       292 ~~~~g~ly~~g~~~-----~~v~~yd~~~~~W~~v~~~~~~~~~  330 (387)
                      ++.+++||++||..     ..+++||+++++|+.+..+|+..+.
T Consensus       484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~  527 (534)
T PHA03098        484 CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGS  527 (534)
T ss_pred             EEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccc
Confidence            88899999999853     4699999999999999887765543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.97  E-value=4e-28  Score=228.68  Aligned_cols=215  Identities=18%  Similarity=0.213  Sum_probs=164.3

Q ss_pred             eeEEEeCCEEEEEcCccCCCCCCCCccEEEeC--CCCceeeCCCCC-CCceeeeEEeeCCEEEEEecCCCCC---CCCCC
Q 044903          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDP--ICRTWTFGPELV-TPRRWCAAGYSRGAVYVASGIGSQF---SSDVA  213 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp--~t~~W~~l~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~  213 (387)
                      ..+++++++||++||...      +.+++||+  .+++|+++++|| .+|..+++++++++|||+||.....   ....+
T Consensus        11 ~~~~~~~~~vyv~GG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~   84 (346)
T TIGR03547        11 GTGAIIGDKVYVGLGSAG------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVF   84 (346)
T ss_pred             ceEEEECCEEEEEccccC------CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceec
Confidence            456678999999999632      56899996  678999999999 6899999999999999999985311   01246


Q ss_pred             ceEEEEeCCCCccccCeEEcC-CCCCCcccccceeEE-EECCEEEEEeeeC-----------------------------
Q 044903          214 KSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAV-GWKGKLCLVNVKG-----------------------------  262 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v-~~~g~lyv~gg~~-----------------------------  262 (387)
                      ..+++||+.+++    |+.++ ++|..+   ..+.++ +++|+||++||..                             
T Consensus        85 ~~v~~Yd~~~~~----W~~~~~~~p~~~---~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T TIGR03547        85 DDVYRYDPKKNS----WQKLDTRSPVGL---LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF  157 (346)
T ss_pred             ccEEEEECCCCE----EecCCCCCCCcc---cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence            789999999999    99997 344433   235555 6899999999863                             


Q ss_pred             ----------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC------CeEEEEe--CCCCceEEcccc
Q 044903          263 ----------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS------CTLSKYD--EVMDDWKEVVKS  324 (387)
Q Consensus       263 ----------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~------~~v~~yd--~~~~~W~~v~~~  324 (387)
                                ..+++||+.+++|+.+++.+...+.++++++.+++||++||..      ..++.||  +++++|+++..+
T Consensus       158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m  237 (346)
T TIGR03547       158 SQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL  237 (346)
T ss_pred             CCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence                      4689999999999999874333456777888899999999843      2355554  577899999887


Q ss_pred             ccccC-------ceeEEEeCCeEEEEecCC----------------------ceEEEEEecCCCCCceeEE--cCCCC
Q 044903          325 DLLKG-------ARHAAAGGGRVCAVCENG----------------------GGIVVVDVKAAAAPTIFVV--DTPLG  371 (387)
Q Consensus       325 ~~~~~-------~~~~~~~~~~l~v~gg~~----------------------~~i~v~d~~~~~~~~~W~~--~~~~~  371 (387)
                      +..+.       .+.++.++|+|||+||..                      ..+.+||+.+.    .|+.  .+|..
T Consensus       238 ~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~----~W~~~~~lp~~  311 (346)
T TIGR03547       238 PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG----KWSKVGKLPQG  311 (346)
T ss_pred             CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC----cccccCCCCCC
Confidence            65331       244678999999999852                      14789999865    8996  55544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.97  E-value=5.8e-28  Score=225.29  Aligned_cols=216  Identities=14%  Similarity=0.127  Sum_probs=170.2

Q ss_pred             ccceeEEEeCCEEEEEcCccCCCC--------CCCCccEEEe-CCC-CceeeCCCCCCCceeeeEEeeCCEEEEEecCCC
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFN--------PALTRPLIFD-PIC-RTWTFGPELVTPRRWCAAGYSRGAVYVASGIGS  206 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~--------~~~~~~~vyd-p~t-~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~  206 (387)
                      ..++.++++++.||++||.+....        ...+++++|+ +.. .+|..+++||.+|..+++++++++||++||...
T Consensus         4 ~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~   83 (323)
T TIGR03548         4 VAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS   83 (323)
T ss_pred             eeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC
Confidence            345778889999999999865321        1235678775 433 379999999999988888899999999999864


Q ss_pred             CCCCCCCceEEEEeCCCCccccCe----EEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceee
Q 044903          207 QFSSDVAKSVEKWDLMNGEKNSRW----EKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDD  277 (387)
Q Consensus       207 ~~~~~~~~~v~vyd~~t~~~~~~W----~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~  277 (387)
                         ....++++.||+.+++    |    ..+++||.++.   .+.+++++++||++||..     .++++||+.+++|++
T Consensus        84 ---~~~~~~v~~~d~~~~~----w~~~~~~~~~lp~~~~---~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~  153 (323)
T TIGR03548        84 ---SERFSSVYRITLDESK----EELICETIGNLPFTFE---NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE  153 (323)
T ss_pred             ---CCCceeEEEEEEcCCc----eeeeeeEcCCCCcCcc---CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence               3456789999999998    7    78888887654   488899999999999963     789999999999999


Q ss_pred             ccccccCCCCCcEEEEeCCeEEEEeCCCC----eEEEEeCCCCceEEccccc-----ccc-CceeEEEeCCeEEEEecCC
Q 044903          278 MREGMVRGWRGPVAAMDEEVLYGIDENSC----TLSKYDEVMDDWKEVVKSD-----LLK-GARHAAAGGGRVCAVCENG  347 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~g~ly~~g~~~~----~v~~yd~~~~~W~~v~~~~-----~~~-~~~~~~~~~~~l~v~gg~~  347 (387)
                      ++..+...+..+++++.+++||++||.++    ++++||+++++|+.+..++     ... ...+++..+++|||+||.+
T Consensus       154 ~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       154 LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            98633334556777788999999998643    4789999999999998653     222 2344556689999999853


Q ss_pred             -------------------------------------ceEEEEEecCCCCCceeEE
Q 044903          348 -------------------------------------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       348 -------------------------------------~~i~v~d~~~~~~~~~W~~  366 (387)
                                                           ..+++||+.++    .|+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~  285 (323)
T TIGR03548       234 KDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG----KWKS  285 (323)
T ss_pred             HHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC----eeeE
Confidence                                                 35899999976    8997

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.95  E-value=4.4e-26  Score=216.57  Aligned_cols=228  Identities=19%  Similarity=0.226  Sum_probs=169.5

Q ss_pred             CcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCC--CCceeeCCCCC-CCce
Q 044903          111 TWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPI--CRTWTFGPELV-TPRR  187 (387)
Q Consensus       111 ~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~--t~~W~~l~~~~-~~r~  187 (387)
                      .+..+|+||.+               +..+++++++++||++||...      +.+++||+.  +++|.++++|| .+|.
T Consensus        18 ~~~~l~~lP~~---------------~~~~~~~~~~~~iyv~gG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~r~   76 (376)
T PRK14131         18 NAEQLPDLPVP---------------FKNGTGAIDNNTVYVGLGSAG------TSWYKLDLNAPSKGWTKIAAFPGGPRE   76 (376)
T ss_pred             ecccCCCCCcC---------------ccCCeEEEECCEEEEEeCCCC------CeEEEEECCCCCCCeEECCcCCCCCcc
Confidence            45677777752               222466778999999999532      457899986  47999999998 5898


Q ss_pred             eeeEEeeCCEEEEEecCCCCCC---CCCCceEEEEeCCCCccccCeEEcCCC-CCCcccccceeEEE-ECCEEEEEeeeC
Q 044903          188 WCAAGYSRGAVYVASGIGSQFS---SDVAKSVEKWDLMNGEKNSRWEKTGEL-KDGRFSREAIDAVG-WKGKLCLVNVKG  262 (387)
Q Consensus       188 ~~~~~~~~~~iyv~GG~~~~~~---~~~~~~v~vyd~~t~~~~~~W~~~~~~-~~~~~~~~~~~~v~-~~g~lyv~gg~~  262 (387)
                      .+++++++++|||+||......   ...++.+++||+.+++    |+.++++ |..+   ..+.+++ ++++||++||..
T Consensus        77 ~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~----W~~~~~~~p~~~---~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS----WQKLDTRSPVGL---AGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE----EEeCCCCCCCcc---cceEEEEeeCCEEEEECCCC
Confidence            8889999999999999754101   1246789999999999    9999853 4332   3366666 899999999963


Q ss_pred             ---------------------------------------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeC
Q 044903          263 ---------------------------------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE  303 (387)
Q Consensus       263 ---------------------------------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~  303 (387)
                                                             ..+++||+.+++|+.+++.+...+.++++++.+++||++||
T Consensus       150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG  229 (376)
T PRK14131        150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING  229 (376)
T ss_pred             HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEee
Confidence                                                   36899999999999998743335667788888999999998


Q ss_pred             CC------CeE--EEEeCCCCceEEccccccccC--------ceeEEEeCCeEEEEecCC--------------------
Q 044903          304 NS------CTL--SKYDEVMDDWKEVVKSDLLKG--------ARHAAAGGGRVCAVCENG--------------------  347 (387)
Q Consensus       304 ~~------~~v--~~yd~~~~~W~~v~~~~~~~~--------~~~~~~~~~~l~v~gg~~--------------------  347 (387)
                      ..      ..+  +.||+++++|+.+..+|..+.        .+.++..+++|||+||.+                    
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  309 (376)
T PRK14131        230 EIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK  309 (376)
T ss_pred             eECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc
Confidence            42      123  456889999999987765432        122567899999999842                    


Q ss_pred             --ceEEEEEecCCCCCceeEE--cCCC
Q 044903          348 --GGIVVVDVKAAAAPTIFVV--DTPL  370 (387)
Q Consensus       348 --~~i~v~d~~~~~~~~~W~~--~~~~  370 (387)
                        ..+.+||+.+.    .|+.  .+|.
T Consensus       310 ~~~~~e~yd~~~~----~W~~~~~lp~  332 (376)
T PRK14131        310 KSWSDEIYALVNG----KWQKVGELPQ  332 (376)
T ss_pred             ceeehheEEecCC----cccccCcCCC
Confidence              12568999866    8986  5554

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=195.30  Aligned_cols=222  Identities=15%  Similarity=0.193  Sum_probs=179.7

Q ss_pred             cccceeEEEeCCEEEEEcCccCCCCC---CCCccEEEeCCCCceeeCCC-------------CCCCceeeeEEeeCCEEE
Q 044903          136 RNLPVQLVSLSGKLILLAATTHNFNP---ALTRPLIFDPICRTWTFGPE-------------LVTPRRWCAAGYSRGAVY  199 (387)
Q Consensus       136 ~~~~~~~~~~~~~l~v~GG~~~~~~~---~~~~~~vydp~t~~W~~l~~-------------~~~~r~~~~~~~~~~~iy  199 (387)
                      +|.+|++++++..||-|||++.....   ..-+|+++|..+-+|.++|+             .|..|..++.+..++++|
T Consensus        13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y   92 (392)
T KOG4693|consen   13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY   92 (392)
T ss_pred             ccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence            37789999999999999998864322   23468999999999999886             245577899999999999


Q ss_pred             EEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-------CeEEEEECCC
Q 044903          200 VASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-------AEGAVYDVVA  272 (387)
Q Consensus       200 v~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-------~~i~~yD~~~  272 (387)
                      |.||.++  +.+..+.++.||+++++    |.+..--..-.-+|++|+++++++.+|++||+.       .+++++|..+
T Consensus        93 vWGGRND--~egaCN~Ly~fDp~t~~----W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~T  166 (392)
T KOG4693|consen   93 VWGGRND--DEGACNLLYEFDPETNV----WKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFAT  166 (392)
T ss_pred             EEcCccC--cccccceeeeecccccc----ccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccc
Confidence            9999977  45778899999999999    987652222224568899999999999999986       7899999999


Q ss_pred             Cceeeccc-cccCCCC-CcEEEEeCCeEEEEeCCC--------------CeEEEEeCCCCceEEcccc---ccccCceeE
Q 044903          273 NTWDDMRE-GMVRGWR-GPVAAMDEEVLYGIDENS--------------CTLSKYDEVMDDWKEVVKS---DLLKGARHA  333 (387)
Q Consensus       273 ~~W~~~~~-~~~~~~~-~~~~~~~~g~ly~~g~~~--------------~~v~~yd~~~~~W~~v~~~---~~~~~~~~~  333 (387)
                      .+|+.+.. +-|..|+ .+++++.++.+|++||..              .+|..+|..++.|..-++.   |.-+..+++
T Consensus       167 mtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~  246 (392)
T KOG4693|consen  167 MTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHST  246 (392)
T ss_pred             eeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccce
Confidence            99999862 2344444 567778889999999732              2588999999999997643   456678999


Q ss_pred             EEeCCeEEEEecCC-------ceEEEEEecCCCCCceeEEc
Q 044903          334 AAGGGRVCAVCENG-------GGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       334 ~~~~~~l~v~gg~~-------~~i~v~d~~~~~~~~~W~~~  367 (387)
                      ..++++||+|||..       ++++.+|+.+.    .|.+.
T Consensus       247 fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~----~W~~I  283 (392)
T KOG4693|consen  247 FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTS----MWSVI  283 (392)
T ss_pred             EEEcceEEEecccchhhhhhhcceeecccccc----hheee
Confidence            99999999998853       57899999987    89973

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.87  E-value=1.6e-20  Score=182.70  Aligned_cols=221  Identities=14%  Similarity=0.153  Sum_probs=180.6

Q ss_pred             cccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC---CCCCCceeeeEEeeCCEEEEEecCCCCCCCCC
Q 044903          136 RNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP---ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       136 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  212 (387)
                      +|.+|+++.+++++|++||..........+++++|..+..|...+   ..|.+|..+..+.++++||++||...  ....
T Consensus        60 ~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~--~~~~  137 (482)
T KOG0379|consen   60 PRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK--KYRN  137 (482)
T ss_pred             hhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC--CCCC
Confidence            377899999999999999976532222225999999999999853   45688999999999999999999975  2344


Q ss_pred             CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEECCCCceeeccc--cccC
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMRE--GMVR  284 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~~--~~~~  284 (387)
                      ...++.||+.|.+    |+.+.....+..+|..|++++++.++||+||.+      +++++||+++.+|.++..  ..+.
T Consensus       138 ~~~l~~~d~~t~~----W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~  213 (482)
T KOG0379|consen  138 LNELHSLDLSTRT----WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS  213 (482)
T ss_pred             hhheEeccCCCCc----EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence            7899999999999    999987666556677799999999999999987      789999999999998862  2455


Q ss_pred             CCCCcEEEEeCCeEEEEeCCC------CeEEEEeCCCCceEEcc---ccccccCceeEEEeCCeEEEEecCCc-------
Q 044903          285 GWRGPVAAMDEEVLYGIDENS------CTLSKYDEVMDDWKEVV---KSDLLKGARHAAAGGGRVCAVCENGG-------  348 (387)
Q Consensus       285 ~~~~~~~~~~~g~ly~~g~~~------~~v~~yd~~~~~W~~v~---~~~~~~~~~~~~~~~~~l~v~gg~~~-------  348 (387)
                      ++.+|++++.++++++++|..      ++++.+|+.+.+|.++.   ..|..+..|.++..+..++++||+..       
T Consensus       214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~  293 (482)
T KOG0379|consen  214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLG  293 (482)
T ss_pred             CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccc
Confidence            677999999999999998754      36999999999999765   34667777888899999999998632       


Q ss_pred             eEEEEEecCCCCCceeEE
Q 044903          349 GIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       349 ~i~v~d~~~~~~~~~W~~  366 (387)
                      ..+.+|..+.    .|..
T Consensus       294 ~~~~l~~~~~----~w~~  307 (482)
T KOG0379|consen  294 DLYGLDLETL----VWSK  307 (482)
T ss_pred             cccccccccc----ceee
Confidence            4577777754    7885

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.86  E-value=8.6e-20  Score=177.65  Aligned_cols=223  Identities=19%  Similarity=0.240  Sum_probs=179.7

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|++++...........++++|..+..|.........|            .++.++.+++++++||++||.+. .....
T Consensus        72 ~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p------------~~r~g~~~~~~~~~l~lfGG~~~-~~~~~  138 (482)
T KOG0379|consen   72 KLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP------------SPRYGHSLSAVGDKLYLFGGTDK-KYRNL  138 (482)
T ss_pred             EEEEECCCCCCCccccceeEEeecCCcccccccccCCCC------------CcccceeEEEECCeEEEEccccC-CCCCh
Confidence            478888753222222336999999999998766544432            23788999999999999999764 24457


Q ss_pred             CccEEEeCCCCceeeCC---CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          164 TRPLIFDPICRTWTFGP---ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      ++++.||+.|++|+.+.   .+|.+|..|+++++++++||+||.+..  ....+++++||+++.+    |.++.......
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~--~~~~ndl~i~d~~~~~----W~~~~~~g~~P  212 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT--GDSLNDLHIYDLETST----WSELDTQGEAP  212 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCc--ccceeeeeeecccccc----ceecccCCCCC
Confidence            89999999999999964   457899999999999999999999762  3478999999999999    99998665555


Q ss_pred             ccccceeEEEECCEEEEEeeeC------CeEEEEECCCCceeecc--ccccCCCCCcEEEEeCCeEEEEeCCC-------
Q 044903          241 FSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMR--EGMVRGWRGPVAAMDEEVLYGIDENS-------  305 (387)
Q Consensus       241 ~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~--~~~~~~~~~~~~~~~~g~ly~~g~~~-------  305 (387)
                      .+|..|++++++++++++||..      .+++.+|+.+.+|..+.  ...+.++.+++.++.+.+++++||..       
T Consensus       213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l  292 (482)
T KOG0379|consen  213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPL  292 (482)
T ss_pred             CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccc
Confidence            5667799999999999998765      88999999999999766  34577777888888899999999743       


Q ss_pred             CeEEEEeCCCCceEEccccc
Q 044903          306 CTLSKYDEVMDDWKEVVKSD  325 (387)
Q Consensus       306 ~~v~~yd~~~~~W~~v~~~~  325 (387)
                      ++++.||.++..|+.+....
T Consensus       293 ~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  293 GDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cccccccccccceeeeeccc
Confidence            35888999999999987654

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.82  E-value=1.1e-18  Score=160.59  Aligned_cols=273  Identities=13%  Similarity=0.130  Sum_probs=187.6

Q ss_pred             hhhhhccCCCCCCc----------c-eEEEeecCCCCCCCCCeE-EEEEeCCCCCcccCCCCCCCCCccccccCCCcccc
Q 044903           69 SWRRLIYSPSFPPF----------L-SLYALFSPKSNSSSTPIH-LFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSR  136 (387)
Q Consensus        69 ~W~~li~s~~f~~~----------~-~l~~~~~~~~~~~~~~~~-~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~  136 (387)
                      +||++..+..-.+.          . .+.+|++    .+++-.. +++||..+++|..-. ...+  .         -.+
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGG----GNEGiiDELHvYNTatnqWf~Pa-vrGD--i---------Ppg   81 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGG----GNEGIIDELHVYNTATNQWFAPA-VRGD--I---------PPG   81 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecC----Ccccchhhhhhhccccceeecch-hcCC--C---------CCc
Confidence            68888766332211          1 3444554    3444444 899999999997422 2211  0         011


Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC-------CCCCCceeeeEEeeCCEEEEEecCCCCC-
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP-------ELVTPRRWCAAGYSRGAVYVASGIGSQF-  208 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~~-  208 (387)
                      ...|.+++.+.+||+|||..+ .....++++..-...=.|+++.       +.|.||-.|+..++++|-|++||..+.. 
T Consensus        82 cAA~GfvcdGtrilvFGGMvE-YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdse  160 (830)
T KOG4152|consen   82 CAAFGFVCDGTRILVFGGMVE-YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSE  160 (830)
T ss_pred             hhhcceEecCceEEEEccEee-eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccccc
Confidence            344778889999999999654 2345566665554444677763       3568999999999999999999984421 


Q ss_pred             -----CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE------CCEEEEEeeeC----CeEEEEECCCC
Q 044903          209 -----SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW------KGKLCLVNVKG----AEGAVYDVVAN  273 (387)
Q Consensus       209 -----~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~------~g~lyv~gg~~----~~i~~yD~~~~  273 (387)
                           -..+++++++.++..+.....|...-.......+|+.|.++.+      ..++|+.||..    .+++..|+++-
T Consensus       161 DpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl  240 (830)
T KOG4152|consen  161 DPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTL  240 (830)
T ss_pred             CcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEeccee
Confidence                 1246788888887755433448765433222234455999988      34799999987    89999999999


Q ss_pred             ceeecc--ccccCCCCCcEEEEeCCeEEEEeCC-------------------CCeEEEEeCCCCceEEcc-------ccc
Q 044903          274 TWDDMR--EGMVRGWRGPVAAMDEEVLYGIDEN-------------------SCTLSKYDEVMDDWKEVV-------KSD  325 (387)
Q Consensus       274 ~W~~~~--~~~~~~~~~~~~~~~~g~ly~~g~~-------------------~~~v~~yd~~~~~W~~v~-------~~~  325 (387)
                      .|.+..  ...+..+.-++++..|+++|++||-                   ...+-++++++..|+.+-       ..|
T Consensus       241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiP  320 (830)
T KOG4152|consen  241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIP  320 (830)
T ss_pred             ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccc
Confidence            998775  2234445567888899999999971                   124788999999999874       246


Q ss_pred             cccCceeEEEeCCeEEEEecCC------------ceEEEEEecCC
Q 044903          326 LLKGARHAAAGGGRVCAVCENG------------GGIVVVDVKAA  358 (387)
Q Consensus       326 ~~~~~~~~~~~~~~l~v~gg~~------------~~i~v~d~~~~  358 (387)
                      +.+..+++++++.++|+..|++            .++|.+|....
T Consensus       321 R~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP  365 (830)
T KOG4152|consen  321 RARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP  365 (830)
T ss_pred             cccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence            6777899999999999998863            24566676644

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.78  E-value=1.3e-17  Score=149.99  Aligned_cols=212  Identities=14%  Similarity=0.122  Sum_probs=159.3

Q ss_pred             CCEEEEEcCccCC--CCCCCCccEEEeCCCCceeeC--CCCCCCceeeeEEeeC-CEEEEEecCCCCCCC---CCCceEE
Q 044903          146 SGKLILLAATTHN--FNPALTRPLIFDPICRTWTFG--PELVTPRRWCAAGYSR-GAVYVASGIGSQFSS---DVAKSVE  217 (387)
Q Consensus       146 ~~~l~v~GG~~~~--~~~~~~~~~vydp~t~~W~~l--~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~---~~~~~v~  217 (387)
                      .+.|+++||.-..  .....+++++||..++.|+++  |.-|.||+.|.++++. |.+|++||.-..-++   .--.+++
T Consensus        78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W  157 (521)
T KOG1230|consen   78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW  157 (521)
T ss_pred             cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence            4589999984332  123468899999999999996  5667899888777775 899999997332111   1235889


Q ss_pred             EEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---------CeEEEEECCCCceeeccccc--cCCC
Q 044903          218 KWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---------AEGAVYDVVANTWDDMREGM--VRGW  286 (387)
Q Consensus       218 vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---------~~i~~yD~~~~~W~~~~~~~--~~~~  286 (387)
                      +||..+++    |+.+..-. ...+|.+|.+++...+|.++||+-         +++++||+++=+|..+.+.-  |..+
T Consensus       158 ~fd~~trk----weql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR  232 (521)
T KOG1230|consen  158 LFDLKTRK----WEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR  232 (521)
T ss_pred             eeeeccch----heeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC
Confidence            99999999    99997433 224456799999999999999975         89999999999999997532  5566


Q ss_pred             CCcEEEEe-CCeEEEEeCCC--------------CeEEEEeCCC-----CceEEccc---cccccCceeEEEe-CCeEEE
Q 044903          287 RGPVAAMD-EEVLYGIDENS--------------CTLSKYDEVM-----DDWKEVVK---SDLLKGARHAAAG-GGRVCA  342 (387)
Q Consensus       287 ~~~~~~~~-~g~ly~~g~~~--------------~~v~~yd~~~-----~~W~~v~~---~~~~~~~~~~~~~-~~~l~v  342 (387)
                      .+.+.++. .|.||+.||.+              .+++..+++.     -.|+.+.+   .|.+|..++++.. +++-+.
T Consensus       233 SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~  312 (521)
T KOG1230|consen  233 SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALF  312 (521)
T ss_pred             CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEE
Confidence            67787777 88999999842              2578888876     46788764   3456666666554 569999


Q ss_pred             EecC--------------CceEEEEEecCCCCCceeEE
Q 044903          343 VCEN--------------GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       343 ~gg~--------------~~~i~v~d~~~~~~~~~W~~  366 (387)
                      |||-              .+.++.||...+    .|..
T Consensus       313 FGGV~D~eeeeEsl~g~F~NDLy~fdlt~n----rW~~  346 (521)
T KOG1230|consen  313 FGGVCDLEEEEESLSGEFFNDLYFFDLTRN----RWSE  346 (521)
T ss_pred             ecceecccccchhhhhhhhhhhhheecccc----hhhH
Confidence            9882              157899999976    6774

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.76  E-value=2.7e-17  Score=148.04  Aligned_cols=205  Identities=16%  Similarity=0.178  Sum_probs=152.2

Q ss_pred             EEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEe-CCEEEEEcCccCCC----CCCCCccEEEeCCCCc
Q 044903          101 HLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSL-SGKLILLAATTHNF----NPALTRPLIFDPICRT  175 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~----~~~~~~~~vydp~t~~  175 (387)
                      .+|.||..++.|+.+-.... |+.            |.+|+++++ .|.+|++||.-...    -....++|.||..|++
T Consensus        99 dLy~Yn~k~~eWkk~~spn~-P~p------------Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk  165 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNA-PPP------------RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK  165 (521)
T ss_pred             eeeEEeccccceeEeccCCC-cCC------------CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch
Confidence            37899999999998754333 211            555777664 58999999954321    1246789999999999


Q ss_pred             eeeC--CCCCCCceeeeEEeeCCEEEEEecCCCC-CCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-
Q 044903          176 WTFG--PELVTPRRWCAAGYSRGAVYVASGIGSQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-  251 (387)
Q Consensus       176 W~~l--~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-  251 (387)
                      |.++  +.-|.+|+.|..++...+|+++||.-+. .+..+.+++++||+.+-+    |.++.+-.....+|.+|...+. 
T Consensus       166 weql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk----W~Klepsga~PtpRSGcq~~vtp  241 (521)
T KOG1230|consen  166 WEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK----WSKLEPSGAGPTPRSGCQFSVTP  241 (521)
T ss_pred             heeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee----eeeccCCCCCCCCCCcceEEecC
Confidence            9996  4578999999999999999999998442 123567899999999999    9999863322344556887777 


Q ss_pred             CCEEEEEeeeC--------------CeEEEEECCC-----Cceeeccc-c-ccCCCCCcEEEEeC-CeEEEEeCC-----
Q 044903          252 KGKLCLVNVKG--------------AEGAVYDVVA-----NTWDDMRE-G-MVRGWRGPVAAMDE-EVLYGIDEN-----  304 (387)
Q Consensus       252 ~g~lyv~gg~~--------------~~i~~yD~~~-----~~W~~~~~-~-~~~~~~~~~~~~~~-g~ly~~g~~-----  304 (387)
                      +|.||+.||+.              .+++..+++.     -.|..+.+ + .|..+.+.++++.. ++-+.|||-     
T Consensus       242 qg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ee  321 (521)
T KOG1230|consen  242 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEE  321 (521)
T ss_pred             CCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccc
Confidence            99999999986              6778888887     36777763 2 24445556666554 477888761     


Q ss_pred             ---------CCeEEEEeCCCCceEEcc
Q 044903          305 ---------SCTLSKYDEVMDDWKEVV  322 (387)
Q Consensus       305 ---------~~~v~~yd~~~~~W~~v~  322 (387)
                               .++++.||++.++|.+..
T Consensus       322 eeEsl~g~F~NDLy~fdlt~nrW~~~q  348 (521)
T KOG1230|consen  322 EEESLSGEFFNDLYFFDLTRNRWSEGQ  348 (521)
T ss_pred             cchhhhhhhhhhhhheecccchhhHhh
Confidence                     146999999999998764

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.73  E-value=8.6e-17  Score=148.22  Aligned_cols=216  Identities=9%  Similarity=0.091  Sum_probs=156.8

Q ss_pred             CCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceee---CCCCCCCc
Q 044903          110 STWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTF---GPELVTPR  186 (387)
Q Consensus       110 ~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~---l~~~~~~r  186 (387)
                      -+|+++.....+ ..          ..|.||.++++...|++|||.++   .-.+++++||..||+|..   -.+.|.+.
T Consensus        17 ~rWrrV~~~tGP-vP----------rpRHGHRAVaikELiviFGGGNE---GiiDELHvYNTatnqWf~PavrGDiPpgc   82 (830)
T KOG4152|consen   17 VRWRRVQQSTGP-VP----------RPRHGHRAVAIKELIVIFGGGNE---GIIDELHVYNTATNQWFAPAVRGDIPPGC   82 (830)
T ss_pred             cceEEEecccCC-CC----------CccccchheeeeeeEEEecCCcc---cchhhhhhhccccceeecchhcCCCCCch
Confidence            468877655541 11          12678999999999999999754   356889999999999986   34677778


Q ss_pred             eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC----CCcccccceeEEEECCEEEEEeeeC
Q 044903          187 RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK----DGRFSREAIDAVGWKGKLCLVNVKG  262 (387)
Q Consensus       187 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~----~~~~~~~~~~~v~~~g~lyv~gg~~  262 (387)
                      ..|+.+..+.+|||+||+-+  .+.+.+  +.|.+....  |.|+++.+-+    .+...|-+|+...++++-|+|||-.
T Consensus        83 AA~GfvcdGtrilvFGGMvE--YGkYsN--dLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLa  156 (830)
T KOG4152|consen   83 AAFGFVCDGTRILVFGGMVE--YGKYSN--DLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLA  156 (830)
T ss_pred             hhcceEecCceEEEEccEee--eccccc--hHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccc
Confidence            88888888999999999865  244444  345555554  3377775332    1224455699999999999999864


Q ss_pred             --------------CeEEEEECCCC----ceeecc--ccccCCCCCcEEEEe------CCeEEEEeCCC----CeEEEEe
Q 044903          263 --------------AEGAVYDVVAN----TWDDMR--EGMVRGWRGPVAAMD------EEVLYGIDENS----CTLSKYD  312 (387)
Q Consensus       263 --------------~~i~~yD~~~~----~W~~~~--~~~~~~~~~~~~~~~------~g~ly~~g~~~----~~v~~yd  312 (387)
                                    +++++.++..+    .|...-  ...+..+..+.++++      ..++|++||..    +++|-.|
T Consensus       157 NdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ld  236 (830)
T KOG4152|consen  157 NDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLD  236 (830)
T ss_pred             ccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEe
Confidence                          66777766533    587543  223555556777765      34799999854    5799999


Q ss_pred             CCCCceEEcc---ccccccCceeEEEeCCeEEEEec
Q 044903          313 EVMDDWKEVV---KSDLLKGARHAAAGGGRVCAVCE  345 (387)
Q Consensus       313 ~~~~~W~~v~---~~~~~~~~~~~~~~~~~l~v~gg  345 (387)
                      +++-.|.+..   ..|..+..+.++.+++|+|||||
T Consensus       237 l~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGG  272 (830)
T KOG4152|consen  237 LDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGG  272 (830)
T ss_pred             cceeecccccccCCCCCCcccccceeecceeEEecc
Confidence            9999999975   33556777889999999999987

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.53  E-value=6.5e-13  Score=118.44  Aligned_cols=235  Identities=16%  Similarity=0.174  Sum_probs=156.7

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCC--CCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC--
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVS--STWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF--  159 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~--~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~--  159 (387)
                      .+|+-++      +....+|.+|...  ..|..+...|..+              |-+...++++++||++||.....  
T Consensus        48 ~~YVGLG------s~G~afy~ldL~~~~k~W~~~a~FpG~~--------------rnqa~~a~~~~kLyvFgG~Gk~~~~  107 (381)
T COG3055          48 TVYVGLG------SAGTAFYVLDLKKPGKGWTKIADFPGGA--------------RNQAVAAVIGGKLYVFGGYGKSVSS  107 (381)
T ss_pred             eEEEEec------cCCccceehhhhcCCCCceEcccCCCcc--------------cccchheeeCCeEEEeeccccCCCC
Confidence            5777665      2456688888665  5799999988732              44566788999999999976532  


Q ss_pred             -CCCCCccEEEeCCCCceeeCCCC-CCCceeeeEEeeCC-EEEEEecCCCCC----------------------------
Q 044903          160 -NPALTRPLIFDPICRTWTFGPEL-VTPRRWCAAGYSRG-AVYVASGIGSQF----------------------------  208 (387)
Q Consensus       160 -~~~~~~~~vydp~t~~W~~l~~~-~~~r~~~~~~~~~~-~iyv~GG~~~~~----------------------------  208 (387)
                       .+..+++++|||.+|+|+++... |..-..+.++..++ +||+.||.....                            
T Consensus       108 ~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~  187 (381)
T COG3055         108 SPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK  187 (381)
T ss_pred             CceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence             23467899999999999998643 33344566666766 999999974320                            


Q ss_pred             ---CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEECC--CCceee
Q 044903          209 ---SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVV--ANTWDD  277 (387)
Q Consensus       209 ---~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~--~~~W~~  277 (387)
                         +-.....+..|||.+++    |+.+...|.-.  ++..+.+.-++++.++.|.-      ..+..+|..  ..+|..
T Consensus       188 ~~~dy~~n~ev~sy~p~~n~----W~~~G~~pf~~--~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~  261 (381)
T COG3055         188 KAEDYFFNKEVLSYDPSTNQ----WRNLGENPFYG--NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK  261 (381)
T ss_pred             CHHHhcccccccccccccch----hhhcCcCcccC--ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence               11234577889999999    99998666332  22222333456687887654      445566665  448998


Q ss_pred             cccccc-CC-----CCCcEEEEeCCeEEEEeCC------------------------CCeEEEEeCCCCceEEccccccc
Q 044903          278 MREGMV-RG-----WRGPVAAMDEEVLYGIDEN------------------------SCTLSKYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       278 ~~~~~~-~~-----~~~~~~~~~~g~ly~~g~~------------------------~~~v~~yd~~~~~W~~v~~~~~~  327 (387)
                      +.+.++ .+     ..+.-.-..++.+.+.|+.                        ..+|+.+|  ++.|+.+..+|..
T Consensus       262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~  339 (381)
T COG3055         262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG  339 (381)
T ss_pred             ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC
Confidence            864222 11     1111111234455555541                        12578888  8899999999985


Q ss_pred             cCceeEEEeCCeEEEEecC
Q 044903          328 KGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       328 ~~~~~~~~~~~~l~v~gg~  346 (387)
                      ..-.+.+..+++||+|||.
T Consensus       340 l~YG~s~~~nn~vl~IGGE  358 (381)
T COG3055         340 LAYGVSLSYNNKVLLIGGE  358 (381)
T ss_pred             ccceEEEecCCcEEEEccc
Confidence            5555677889999999985

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.50  E-value=2e-12  Score=115.36  Aligned_cols=191  Identities=18%  Similarity=0.242  Sum_probs=137.4

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCC--CCceeeCCCCC-CCceeeeEEeeCCEEEEEecCCCCCC--CCCCceE
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPI--CRTWTFGPELV-TPRRWCAAGYSRGAVYVASGIGSQFS--SDVAKSV  216 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~--t~~W~~l~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~v  216 (387)
                      -+..++.+||--|...      ...++.|..  .+.|++++..| .+|.....++++++|||+||.+....  ....+++
T Consensus        42 Ga~ig~~~YVGLGs~G------~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~  115 (381)
T COG3055          42 GALIGDTVYVGLGSAG------TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDA  115 (381)
T ss_pred             cceecceEEEEeccCC------ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeee
Confidence            3446778888766322      345666665  46899999988 78889999999999999999865322  3456889


Q ss_pred             EEEeCCCCccccCeEEcCCC-CCCcccccceeEEEECC-EEEEEeeeC--------------------------------
Q 044903          217 EKWDLMNGEKNSRWEKTGEL-KDGRFSREAIDAVGWKG-KLCLVNVKG--------------------------------  262 (387)
Q Consensus       217 ~vyd~~t~~~~~~W~~~~~~-~~~~~~~~~~~~v~~~g-~lyv~gg~~--------------------------------  262 (387)
                      +.||+.+++    |.++... |...   ..+.++.+++ ++|++||..                                
T Consensus       116 Y~y~p~~ns----W~kl~t~sP~gl---~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~  188 (381)
T COG3055         116 YRYDPSTNS----WHKLDTRSPTGL---VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK  188 (381)
T ss_pred             EEecCCCCh----hheecccccccc---ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence            999999999    9998743 3332   3477788888 899999864                                


Q ss_pred             -------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC------CeEEEEeC--CCCceEEccccccc
Q 044903          263 -------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS------CTLSKYDE--VMDDWKEVVKSDLL  327 (387)
Q Consensus       263 -------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~------~~v~~yd~--~~~~W~~v~~~~~~  327 (387)
                             ..+.+|||.+++|+.+...+-.+..+.+++.-++++.++.|+-      ..+++++.  +..+|..++.+|..
T Consensus       189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~  268 (381)
T COG3055         189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP  268 (381)
T ss_pred             HHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence                   5688999999999998864555556666666677788887642      23555554  56689999876553


Q ss_pred             cC-----cee--EEEeCCeEEEEec
Q 044903          328 KG-----ARH--AAAGGGRVCAVCE  345 (387)
Q Consensus       328 ~~-----~~~--~~~~~~~l~v~gg  345 (387)
                      .+     -..  .-..++.+.|.||
T Consensus       269 ~~~~~eGvAGaf~G~s~~~~lv~GG  293 (381)
T COG3055         269 IGSNKEGVAGAFSGKSNGEVLVAGG  293 (381)
T ss_pred             CCCCccccceeccceeCCeEEEecC
Confidence            32     111  2235677888877

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.19  E-value=1.2e-08  Score=90.46  Aligned_cols=185  Identities=13%  Similarity=0.104  Sum_probs=115.2

Q ss_pred             CccEEEeCCCCceeeCCCCCCCce---e--eeEEe----eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRR---W--CAAGY----SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG  234 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~---~--~~~~~----~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~  234 (387)
                      ..+.++||.|++|+.+|+.+.++.   .  .+.+.    ...||..+.....   ......+++|++.+++    |+.+.
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~---~~~~~~~~Vys~~~~~----Wr~~~   86 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG---NRNQSEHQVYTLGSNS----WRTIE   86 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC---CCCCccEEEEEeCCCC----ccccc
Confidence            468999999999999987554211   1  11111    1225555543211   1134578999999999    99998


Q ss_pred             CCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceee-ccccccCC--CCCcEEEEeCCeEEEEeCCC-
Q 044903          235 ELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDD-MREGMVRG--WRGPVAAMDEEVLYGIDENS-  305 (387)
Q Consensus       235 ~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~-~~~~~~~~--~~~~~~~~~~g~ly~~g~~~-  305 (387)
                      ..+.....  ...++.++|.+|.+....     ..|.+||+.+++|++ ++......  .....++..+|+|.++.... 
T Consensus        87 ~~~~~~~~--~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~  164 (230)
T TIGR01640        87 CSPPHHPL--KSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD  164 (230)
T ss_pred             cCCCCccc--cCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC
Confidence            54322111  123788999999987543     279999999999995 65311111  12345677789999887432 


Q ss_pred             -C--eEEEEe-CCCCceEEcccccc-----ccC--ceeEEEeCCeEEEEecC--CceEEEEEecC
Q 044903          306 -C--TLSKYD-EVMDDWKEVVKSDL-----LKG--ARHAAAGGGRVCAVCEN--GGGIVVVDVKA  357 (387)
Q Consensus       306 -~--~v~~yd-~~~~~W~~v~~~~~-----~~~--~~~~~~~~~~l~v~gg~--~~~i~v~d~~~  357 (387)
                       .  +||+.+ .+.+.|++.-..+.     ...  ....+..+|+|++....  +..+..||+.+
T Consensus       165 ~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~  229 (230)
T TIGR01640       165 TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE  229 (230)
T ss_pred             CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence             2  345443 44667998654431     111  13456778999998654  33388999874

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF13964 Kelch_6: Kelch motif

Probab=99.16  E-value=9.2e-11  Score=77.17  Aligned_cols=49  Identities=22%  Similarity=0.361  Sum_probs=43.3

Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCc
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR  186 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r  186 (387)
                      |.++++++.+++||++||.... ....+++++||+.|++|+++++||.+|
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence            4568899999999999997664 567889999999999999999999887

>PF13964 Kelch_6: Kelch motif

Probab=99.02  E-value=8.7e-10  Score=72.48  Aligned_cols=50  Identities=26%  Similarity=0.444  Sum_probs=44.4

Q ss_pred             CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          185 PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      +|.++++++++++|||+||....  ....+++++||+++++    |+.+++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~----W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNT----WEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCc----EEECCCCCCCC
Confidence            57889999999999999999763  4678899999999999    99999999764

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.83  E-value=5e-09  Score=67.87  Aligned_cols=47  Identities=28%  Similarity=0.415  Sum_probs=41.9

Q ss_pred             CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903          185 PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~  237 (387)
                      ||..+++++++++|||+||...  .....+++++||+.+++    |+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~----W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDG--NNQPTNSVEVYDPETNT----WEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBES--TSSBEEEEEEEETTTTE----EEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecc--cCceeeeEEEEeCCCCE----EEEcCCCC
Confidence            5888999999999999999976  45678899999999999    99999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.80  E-value=4.1e-09  Score=68.27  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=40.5

Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV  183 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~  183 (387)
                      |.++++++.+++||++||... .....+++++||+.+++|+++++||
T Consensus         2 R~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    2 RSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence            556899999999999999876 3567788999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.80  E-value=1.5e-08  Score=66.20  Aligned_cols=48  Identities=25%  Similarity=0.281  Sum_probs=42.2

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY  193 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~  193 (387)
                      ++++|++||.........+++++||+.+++|++++++|.+|..|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            578999999874346678999999999999999999999999988875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.77  E-value=1.8e-07  Score=83.41  Aligned_cols=278  Identities=17%  Similarity=0.158  Sum_probs=137.9

Q ss_pred             CCCCh----HHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCCcc--------e------------EEEeecCCCCC
Q 044903           43 LPGLP----DHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPFL--------S------------LYALFSPKSNS   95 (387)
Q Consensus        43 ~~~LP----~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~~~--------~------------l~~~~~~~~~~   95 (387)
                      +..||    |+|.++||+.|.   +..+..|||+|+++++++..++.+        +            .|.+...++..
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~~~  154 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPNDG  154 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCCCcC
Confidence            45789    999999999999   777889999999999998775321        0            11111110000


Q ss_pred             CCCCeEEEE--E-------eCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCcc
Q 044903           96 SSTPIHLFT--F-------DPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRP  166 (387)
Q Consensus        96 ~~~~~~~~~--~-------d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  166 (387)
                      .-....++.  |       +...+.|+....+-..      +.+++-  ...|.-+..+++...|.|-.       -+.+
T Consensus       155 ~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~r------inc~Se--~skgVYClQYDD~kiVSGlr-------DnTi  219 (499)
T KOG0281|consen  155 GFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQR------INCRSE--NSKGVYCLQYDDEKIVSGLR-------DNTI  219 (499)
T ss_pred             CcCCCcchhhhhHHHHHHHhhhhcchhccceeeee------ecCCcc--cCCceEEEEecchhhhcccc-------cCce
Confidence            001111110  0       1222345443322210      000100  01122244456666665542       2445


Q ss_pred             EEEeCCCCceeeCCCCCCCceeee-EEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccc
Q 044903          167 LIFDPICRTWTFGPELVTPRRWCA-AGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA  245 (387)
Q Consensus       167 ~vydp~t~~W~~l~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~  245 (387)
                      -++|-.+..-.+.   ..+..... +.-.++++.|.|..+.        ++-++|..|++    --.     .-....+.
T Consensus       220 kiWD~n~~~c~~~---L~GHtGSVLCLqyd~rviisGSSDs--------TvrvWDv~tge----~l~-----tlihHcea  279 (499)
T KOG0281|consen  220 KIWDKNSLECLKI---LTGHTGSVLCLQYDERVIVSGSSDS--------TVRVWDVNTGE----PLN-----TLIHHCEA  279 (499)
T ss_pred             EEeccccHHHHHh---hhcCCCcEEeeeccceEEEecCCCc--------eEEEEeccCCc----hhh-----HHhhhcce
Confidence            6666554332221   11111111 2234677777665443        78899998887    111     10011111


Q ss_pred             eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCC-CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903          246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR-GPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS  324 (387)
Q Consensus       246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~-~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~  324 (387)
                      .-...+.+-+.+....+..+.++|+..-+=..+.. ...|.+ +..++-.+++..+-...+.++.+|+..+.....  .+
T Consensus       280 VLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rr-VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvR--tl  356 (499)
T KOG0281|consen  280 VLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRR-VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVR--TL  356 (499)
T ss_pred             eEEEEEeCCEEEEecCCceeEEEeccCchHHHHHH-HHhhhhhheeeeccccceEEEecCCceEEEEeccceeeeh--hh
Confidence            11223334344444444667777665444111111 111211 222334456633333345679999988876554  33


Q ss_pred             ccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ...+...+|..+.|+++|-|..++.|-++|+..+
T Consensus       357 ~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  357 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             hcccccceehhccCeEEEecCCCceEEEEecccc
Confidence            3445566777888888888766676777776643

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.76  E-value=2.8e-05  Score=72.41  Aligned_cols=139  Identities=9%  Similarity=0.036  Sum_probs=77.9

Q ss_pred             eEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccc----cccCC-C-CCcEEEEeCCeEEEEeC
Q 044903          230 WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE----GMVRG-W-RGPVAAMDEEVLYGIDE  303 (387)
Q Consensus       230 W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~----~~~~~-~-~~~~~~~~~g~ly~~g~  303 (387)
                      |+.+..+...     ....+.++|++|++... ..++++|.+-. =.++..    .+..+ + .....+...|+|+++..
T Consensus       192 Wt~l~~~~~~-----~~DIi~~kGkfYAvD~~-G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R  264 (373)
T PLN03215        192 LKALKQMGYH-----FSDIIVHKGQTYALDSI-GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVER  264 (373)
T ss_pred             eeEccCCCce-----eeEEEEECCEEEEEcCC-CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEE
Confidence            9999753322     25688999999999543 35666664311 011111    11111 1 12345666788998863


Q ss_pred             C-----------------CCe--EEEEeCCCCceEEcccccccc------CceeEE------EeCCeEEEEecCCceEEE
Q 044903          304 N-----------------SCT--LSKYDEVMDDWKEVVKSDLLK------GARHAA------AGGGRVCAVCENGGGIVV  352 (387)
Q Consensus       304 ~-----------------~~~--v~~yd~~~~~W~~v~~~~~~~------~~~~~~------~~~~~l~v~gg~~~~i~v  352 (387)
                      .                 ...  |+..|.+..+|.++..+....      ..+++.      .-+|.||+.  .+....|
T Consensus       265 ~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt--dd~~~~v  342 (373)
T PLN03215        265 LPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT--EDTMPKV  342 (373)
T ss_pred             EccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE--CCCcceE
Confidence            1                 012  455588889999998765321      111111      125778888  4556678


Q ss_pred             EEecCCCCCceeEEcCCCCceeeEEE
Q 044903          353 VDVKAAAAPTIFVVDTPLGFEALSVH  378 (387)
Q Consensus       353 ~d~~~~~~~~~W~~~~~~~~~~~~~~  378 (387)
                      ||+..+ .+....+.+++..+++..-
T Consensus       343 ~~~~dg-~~~~~~~~~~~~~~~~~~~  367 (373)
T PLN03215        343 FKLDNG-NGSSIETTISESSQSSFEM  367 (373)
T ss_pred             EECCCC-CccceEeecCccccchhee
Confidence            888854 4344555555555555433

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.73  E-value=3.6e-08  Score=64.33  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=39.9

Q ss_pred             ccceeEEEeCCEEEEEcCc-cCCCCCCCCccEEEeCCCCceeeCCCCC
Q 044903          137 NLPVQLVSLSGKLILLAAT-THNFNPALTRPLIFDPICRTWTFGPELV  183 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~-~~~~~~~~~~~~vydp~t~~W~~l~~~~  183 (387)
                      |.+|++++.+++||++||. ........+++++||+.|++|+++++|+
T Consensus         2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             ccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            5678999999999999998 2233556788999999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.69  E-value=3e-06  Score=75.05  Aligned_cols=201  Identities=12%  Similarity=0.105  Sum_probs=115.6

Q ss_pred             eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC
Q 044903          100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG  179 (387)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l  179 (387)
                      ..++++||.|++|+.+|+.+..+..      +......+|+....-+.+++.+.....  ......+.+|+..+++|+.+
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~------~~~~~~~~G~d~~~~~YKVv~~~~~~~--~~~~~~~~Vys~~~~~Wr~~   85 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSN------KESDTYFLGYDPIEKQYKVLCFSDRSG--NRNQSEHQVYTLGSNSWRTI   85 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccc------cccceEEEeecccCCcEEEEEEEeecC--CCCCccEEEEEeCCCCcccc
Confidence            4588999999999999865431100      000000223333333456777654321  11235679999999999998


Q ss_pred             CCCCCC-ceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEE-cCCCCCCcc-cccceeEEEECCEEE
Q 044903          180 PELVTP-RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK-TGELKDGRF-SREAIDAVGWKGKLC  256 (387)
Q Consensus       180 ~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~-~~~~~~~~~-~~~~~~~v~~~g~ly  256 (387)
                      ...+.. ......+.++|.+|-+......   .....+..||..+++    |++ ++ +|.... .......+.++|+|.
T Consensus        86 ~~~~~~~~~~~~~v~~~G~lyw~~~~~~~---~~~~~IvsFDl~~E~----f~~~i~-~P~~~~~~~~~~~L~~~~G~L~  157 (230)
T TIGR01640        86 ECSPPHHPLKSRGVCINGVLYYLAYTLKT---NPDYFIVSFDVSSER----FKEFIP-LPCGNSDSVDYLSLINYKGKLA  157 (230)
T ss_pred             ccCCCCccccCCeEEECCEEEEEEEECCC---CCcEEEEEEEcccce----Eeeeee-cCccccccccceEEEEECCEEE
Confidence            743321 1112267789999877643321   111278999999999    996 44 443321 112245677899999


Q ss_pred             EEeeeC----CeEEEEE-CCCCceeecccc-c--cCCC---CCcEEEEeCCeEEEEeCC-CCe-EEEEeCCCC
Q 044903          257 LVNVKG----AEGAVYD-VVANTWDDMREG-M--VRGW---RGPVAAMDEEVLYGIDEN-SCT-LSKYDEVMD  316 (387)
Q Consensus       257 v~gg~~----~~i~~yD-~~~~~W~~~~~~-~--~~~~---~~~~~~~~~g~ly~~g~~-~~~-v~~yd~~~~  316 (387)
                      ++....    -.+++.+ -..+.|++.-.. +  ....   ..+..+..+|+|.+.... .+. +..||++++
T Consensus       158 ~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       158 VLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             EEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence            886532    2445543 335579854211 0  1111   123445667888877653 234 899999874

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.66  E-value=8e-08  Score=62.68  Aligned_cols=49  Identities=22%  Similarity=0.380  Sum_probs=41.2

Q ss_pred             CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903          185 PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~  237 (387)
                      +|..+++++.+++|||+||..........+++++||+++++    |+.+++||
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~----W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQ----WTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCE----EeecCCCC
Confidence            57789999999999999999322235678899999999999    99998765

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>smart00612 Kelch Kelch domain

Probab=98.61  E-value=6.2e-08  Score=62.53  Aligned_cols=47  Identities=23%  Similarity=0.388  Sum_probs=40.0

Q ss_pred             EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCC
Q 044903          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRG  196 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~  196 (387)
                      +||++||...  ....+++++|||.+++|+++++|+.+|..++++.+++
T Consensus         1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            4899999754  3567889999999999999999999999888877654

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.60  E-value=1.3e-08  Score=65.87  Aligned_cols=38  Identities=32%  Similarity=0.473  Sum_probs=32.3

Q ss_pred             CCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCC
Q 044903           43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP   80 (387)
Q Consensus        43 ~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~   80 (387)
                      |..||+||+.+||++||   +.++..|||+|+.++.++.++
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW   41 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW   41 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence            56899999999999999   888999999999999888553

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.59  E-value=7.5e-08  Score=89.76  Aligned_cols=173  Identities=13%  Similarity=0.081  Sum_probs=116.2

Q ss_pred             eCCCCceeeCCCC----------CCCceeeeEEeeCC--EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903          170 DPICRTWTFGPEL----------VTPRRWCAAGYSRG--AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       170 dp~t~~W~~l~~~----------~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~  237 (387)
                      .+.+-+|.+.++-          |..|+.|-.+...+  -||+.||.+.   ...+.+.+.|+...+.    |..+..-.
T Consensus       235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~----W~~iN~~t  307 (723)
T KOG2437|consen  235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQ----WTCINRDT  307 (723)
T ss_pred             ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc---chhHHHHHhhcCCcce----eEEeecCC
Confidence            3456689886542          34566665555544  8999999976   3567789999999999    99886332


Q ss_pred             CCcccccceeEEEECC--EEEEEeeeC-----------CeEEEEECCCCceeecccc-----ccCCCCCcEEEEeCCe--
Q 044903          238 DGRFSREAIDAVGWKG--KLCLVNVKG-----------AEGAVYDVVANTWDDMREG-----MVRGWRGPVAAMDEEV--  297 (387)
Q Consensus       238 ~~~~~~~~~~~v~~~g--~lyv~gg~~-----------~~i~~yD~~~~~W~~~~~~-----~~~~~~~~~~~~~~g~--  297 (387)
                      ...-.|..|.+|..-.  +||++|-+-           .+++.||..++.|.-+...     -|.....+.+++.+.+  
T Consensus       308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~  387 (723)
T KOG2437|consen  308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM  387 (723)
T ss_pred             CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence            2212233366666555  899987542           7899999999999987632     2222335667777777  


Q ss_pred             EEEEeCC--------CCeEEEEeCCCCceEEccccccc----------cCcee--EEEeCCeEEEEecCCce
Q 044903          298 LYGIDEN--------SCTLSKYDEVMDDWKEVVKSDLL----------KGARH--AAAGGGRVCAVCENGGG  349 (387)
Q Consensus       298 ly~~g~~--------~~~v~~yd~~~~~W~~v~~~~~~----------~~~~~--~~~~~~~l~v~gg~~~~  349 (387)
                      |||+||.        .+.++.||.....|......-..          +-.++  ...-+..+|++||.+..
T Consensus       388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK  459 (723)
T ss_pred             EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence            9999973        24699999999999987532111          11222  33446789999876543

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.55  E-value=8e-08  Score=62.74  Aligned_cols=47  Identities=21%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             ccceeEEEe-CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCC
Q 044903          137 NLPVQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT  184 (387)
Q Consensus       137 ~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~  184 (387)
                      |.+|+++.+ ++.||++||.... ....+++++||+.+++|+++++||.
T Consensus         2 R~~h~~~~~~~~~i~v~GG~~~~-~~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    2 RYGHSAVSIGDNSIYVFGGRDSS-GSPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             -BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS--
T ss_pred             cceEEEEEEeCCeEEEECCCCCC-CcccCCEEEEECCCCEEEECCCCCC
Confidence            566888887 5899999998763 2578899999999999999988873

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.44  E-value=2.4e-07  Score=60.48  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             CceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903          185 PRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       185 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~  237 (387)
                      ||..|+++.+ +++|||+||...  ....++++++||+.+++    |++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~--~~~~~~d~~~~d~~~~~----W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDS--SGSPLNDLWIFDIETNT----WTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE---TEE---EEEEETTTTE----EEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCC--CCcccCCEEEEECCCCE----EEECCCCC
Confidence            5778888888 589999999976  23578899999999999    99998877

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.42  E-value=3.3e-07  Score=85.57  Aligned_cols=159  Identities=13%  Similarity=0.063  Sum_probs=112.1

Q ss_pred             CCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCC--EEEEEcCccCCCCCCCCccEEEeCCCCceeeCC---C
Q 044903          107 PVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSG--KLILLAATTHNFNPALTRPLIFDPICRTWTFGP---E  181 (387)
Q Consensus       107 ~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~---~  181 (387)
                      +-+-+|..+++....-.. ..    ...+.|-||+.+...+  .||+.||+++  .+.+.++|.|+...++|....   .
T Consensus       236 ey~~~W~~i~~~~~~~~~-~~----~~p~~RgGHQMV~~~~~~CiYLYGGWdG--~~~l~DFW~Y~v~e~~W~~iN~~t~  308 (723)
T KOG2437|consen  236 EYKPRWSQIIPKSTKGDG-ED----NRPGMRGGHQMVIDVQTECVYLYGGWDG--TQDLADFWAYSVKENQWTCINRDTE  308 (723)
T ss_pred             cccccccccCchhhcccc-cc----cCccccCcceEEEeCCCcEEEEecCccc--chhHHHHHhhcCCcceeEEeecCCC
Confidence            344578887764421000 00    1135578899988665  9999999987  567889999999999999853   4


Q ss_pred             CCCCceeeeEEeeC--CEEEEEecCCCCC---CCCCCceEEEEeCCCCccccCeEEcCC------CCCCcccccceeEEE
Q 044903          182 LVTPRRWCAAGYSR--GAVYVASGIGSQF---SSDVAKSVEKWDLMNGEKNSRWEKTGE------LKDGRFSREAIDAVG  250 (387)
Q Consensus       182 ~~~~r~~~~~~~~~--~~iyv~GG~~~~~---~~~~~~~v~vyd~~t~~~~~~W~~~~~------~~~~~~~~~~~~~v~  250 (387)
                      .|-.|..|..+..-  .|+|+.|-+-...   .....+++++||..++.    |..+.-      -|...+   .|.+++
T Consensus       309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~----W~~ls~dt~~dGGP~~vf---DHqM~V  381 (723)
T KOG2437|consen  309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT----WMLLSEDTAADGGPKLVF---DHQMCV  381 (723)
T ss_pred             CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce----eEEecccccccCCcceee---cceeeE
Confidence            66777666555443  4899998763211   12456789999999999    987751      121122   277888


Q ss_pred             ECCE--EEEEeeeC--------CeEEEEECCCCceeecc
Q 044903          251 WKGK--LCLVNVKG--------AEGAVYDVVANTWDDMR  279 (387)
Q Consensus       251 ~~g~--lyv~gg~~--------~~i~~yD~~~~~W~~~~  279 (387)
                      .+.+  +||+||..        ..+++||.....|..+.
T Consensus       382 d~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~  420 (723)
T KOG2437|consen  382 DSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLR  420 (723)
T ss_pred             ecCcceEEEecCeeccCCCccccceEEEecCCccHHHHH
Confidence            8777  99999976        67899999999998775

>smart00612 Kelch Kelch domain

Probab=98.33  E-value=1.2e-06  Score=56.38  Aligned_cols=47  Identities=23%  Similarity=0.370  Sum_probs=37.8

Q ss_pred             EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC
Q 044903          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG  253 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g  253 (387)
                      +||++||...   ....+.+++||+.+++    |+.+++|+.++..   +++++++|
T Consensus         1 ~iyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~~~~r~~---~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDG---GQRLKSVEVYDPETNK----WTPLPSMPTPRSG---HGVAVING   47 (47)
T ss_pred             CEEEEeCCCC---CceeeeEEEECCCCCe----EccCCCCCCcccc---ceEEEeCC
Confidence            5899999854   3457789999999999    9999999977643   66777664

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.33  E-value=4e-07  Score=56.82  Aligned_cols=35  Identities=40%  Similarity=0.510  Sum_probs=32.5

Q ss_pred             ChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCC
Q 044903           46 LPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP   80 (387)
Q Consensus        46 LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~   80 (387)
                      ||+|++.+||++|+   +.++++|||+|+.++.++.++
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~   38 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW   38 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence            79999999999999   888999999999999998774

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.31  E-value=2.1e-06  Score=55.91  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=39.0

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG  250 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~  250 (387)
                      +++|||+||... ......+++++||+.+++    |++++++|.+|..   |++++
T Consensus         1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~----W~~~~~~P~~R~~---h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNT----WTRIGDLPPPRSG---HTATV   48 (49)
T ss_pred             CCEEEEECCcCC-CCCCEecCEEEEECCCCE----EEECCCCCCCccc---eEEEE
Confidence            578999999983 135678899999999999    9999998877644   77665

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=98.24  E-value=0.0024  Score=59.94  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=97.8

Q ss_pred             eeEEEe-CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCC--CCceE
Q 044903          140 VQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSD--VAKSV  216 (387)
Q Consensus       140 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~v  216 (387)
                      ..++++ +.+|+.++..        ....+||..|..-..+|.++.+.....+..++++||+...........  ....+
T Consensus        69 ~~F~al~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F  140 (342)
T PF07893_consen   69 MDFFALHGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF  140 (342)
T ss_pred             eEEEEecCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence            444454 8888888653        347999999999999999888777777888899999998764321110  01156


Q ss_pred             EEEeCC------CCccccCeEEcCCCCCCccccc----ceeEEEECC-EEEE-EeeeCCeEEEEECCCCceeeccccccC
Q 044903          217 EKWDLM------NGEKNSRWEKTGELKDGRFSRE----AIDAVGWKG-KLCL-VNVKGAEGAVYDVVANTWDDMREGMVR  284 (387)
Q Consensus       217 ~vyd~~------t~~~~~~W~~~~~~~~~~~~~~----~~~~v~~~g-~lyv-~gg~~~~i~~yD~~~~~W~~~~~~~~~  284 (387)
                      |+++..      .....|.|+.+++.|.......    ..+-++++| .|+| +.+.....++||+++.+|+.... ...
T Consensus       141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd-W~L  219 (342)
T PF07893_consen  141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD-WML  219 (342)
T ss_pred             EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc-eec
Confidence            665221      2223355888887654332211    223344444 5666 32221258999999999999875 333


Q ss_pred             CCCCcEEEEeCCeEEEE-eCCC--CeEEEEeCCC
Q 044903          285 GWRGPVAAMDEEVLYGI-DENS--CTLSKYDEVM  315 (387)
Q Consensus       285 ~~~~~~~~~~~g~ly~~-g~~~--~~v~~yd~~~  315 (387)
                      .+.+.+.-+.+-.+++= ....  +.+...|...
T Consensus       220 PF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~  253 (342)
T PF07893_consen  220 PFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS  253 (342)
T ss_pred             CcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence            33333333222223321 1112  3566666544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.18  E-value=0.0024  Score=61.43  Aligned_cols=219  Identities=11%  Similarity=0.125  Sum_probs=128.5

Q ss_pred             EEEEEeCCCC--CcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--e
Q 044903          101 HLFTFDPVSS--TWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--W  176 (387)
Q Consensus       101 ~~~~~d~~~~--~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W  176 (387)
                      .++++|..++  .|+.-.+-+.                  ....+..++.+|+..+        ...++.+|+.|.+  |
T Consensus       131 ~l~ald~~tG~~~W~~~~~~~~------------------~ssP~v~~~~v~v~~~--------~g~l~ald~~tG~~~W  184 (394)
T PRK11138        131 QVYALNAEDGEVAWQTKVAGEA------------------LSRPVVSDGLVLVHTS--------NGMLQALNESDGAVKW  184 (394)
T ss_pred             EEEEEECCCCCCcccccCCCce------------------ecCCEEECCEEEEECC--------CCEEEEEEccCCCEee
Confidence            5788998775  4765321111                  0122345777777543        1368899998875  8


Q ss_pred             eeCCCCCC--CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc-----ccccceeEE
Q 044903          177 TFGPELVT--PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR-----FSREAIDAV  249 (387)
Q Consensus       177 ~~l~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~-----~~~~~~~~v  249 (387)
                      +.-...+.  .+...+.++.++.+|+..+.         ..+..+|..+++..  |+.-...+...     .......-+
T Consensus       185 ~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~~--W~~~~~~~~~~~~~~~~~~~~~sP~  253 (394)
T PRK11138        185 TVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQLI--WQQRISQPTGATEIDRLVDVDTTPV  253 (394)
T ss_pred             eecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChhh--heeccccCCCccchhcccccCCCcE
Confidence            76433221  12233445567777775432         24677888888755  87532222110     000112345


Q ss_pred             EECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceEEccccc
Q 044903          250 GWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD--DWKEVVKSD  325 (387)
Q Consensus       250 ~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~  325 (387)
                      +.++.+|+.+. ...+.++|+.++  .|+.--..      ....++.+++||+.. .++.++.+|.++.  .|+.-....
T Consensus       254 v~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~------~~~~~~~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~  325 (394)
T PRK11138        254 VVGGVVYALAY-NGNLVALDLRSGQIVWKREYGS------VNDFAVDGGRIYLVD-QNDRVYALDTRGGVELWSQSDLLH  325 (394)
T ss_pred             EECCEEEEEEc-CCeEEEEECCCCCEEEeecCCC------ccCcEEECCEEEEEc-CCCeEEEEECCCCcEEEcccccCC
Confidence            67999998753 348899999876  58763211      113456788999886 4688999999765  576421111


Q ss_pred             cccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCC
Q 044903          326 LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTP  369 (387)
Q Consensus       326 ~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~  369 (387)
                        ......+..+|+||+. ..++.++++|..++  ...|+....
T Consensus       326 --~~~~sp~v~~g~l~v~-~~~G~l~~ld~~tG--~~~~~~~~~  364 (394)
T PRK11138        326 --RLLTAPVLYNGYLVVG-DSEGYLHWINREDG--RFVAQQKVD  364 (394)
T ss_pred             --CcccCCEEECCEEEEE-eCCCEEEEEECCCC--CEEEEEEcC
Confidence              1122334568888876 45567889998743  356887553

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.13  E-value=6.2e-07  Score=58.19  Aligned_cols=37  Identities=38%  Similarity=0.541  Sum_probs=30.4

Q ss_pred             CCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCC
Q 044903           43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF   79 (387)
Q Consensus        43 ~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f   79 (387)
                      |..||+|++.+||.+|+   +.+++.|||+|++++.++.+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~   42 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRL   42 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCc
Confidence            45799999999999999   88999999999999988654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.05  E-value=0.0033  Score=60.43  Aligned_cols=206  Identities=14%  Similarity=0.064  Sum_probs=115.9

Q ss_pred             EEEEEeCCCCC--cccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ce
Q 044903          101 HLFTFDPVSST--WDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TW  176 (387)
Q Consensus       101 ~~~~~d~~~~~--W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W  176 (387)
                      .++.+|+.+++  |+.-...+.   ..         . +.....+..++.+|+..+ +       ..++.+|+.+.  .|
T Consensus       171 ~l~ald~~tG~~~W~~~~~~~~---~~---------~-~~~~sP~v~~~~v~~~~~-~-------g~v~a~d~~~G~~~W  229 (394)
T PRK11138        171 MLQALNESDGAVKWTVNLDVPS---LT---------L-RGESAPATAFGGAIVGGD-N-------GRVSAVLMEQGQLIW  229 (394)
T ss_pred             EEEEEEccCCCEeeeecCCCCc---cc---------c-cCCCCCEEECCEEEEEcC-C-------CEEEEEEccCChhhh
Confidence            57888988765  765332221   00         0 000122334666666433 1       35677888776  47


Q ss_pred             eeCCCCCCC-----c---eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeE
Q 044903          177 TFGPELVTP-----R---RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDA  248 (387)
Q Consensus       177 ~~l~~~~~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~  248 (387)
                      +.-...+..     |   ...+.++.++.+|+.+..         ..+..+|..+++..  |+.-.  ...      ...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~---------g~l~ald~~tG~~~--W~~~~--~~~------~~~  290 (394)
T PRK11138        230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN---------GNLVALDLRSGQIV--WKREY--GSV------NDF  290 (394)
T ss_pred             eeccccCCCccchhcccccCCCcEEECCEEEEEEcC---------CeEEEEECCCCCEE--EeecC--CCc------cCc
Confidence            642111110     1   123345668889886532         25788999988765  87632  111      224


Q ss_pred             EEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eEEcccc
Q 044903          249 VGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD--WKEVVKS  324 (387)
Q Consensus       249 v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~--W~~v~~~  324 (387)
                      +..++++|+.+.. ..+.++|.+++  .|+.-..   ......+.++.+++||+.+ .+|.++++|+++.+  |+.-.  
T Consensus       291 ~~~~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~---~~~~~~sp~v~~g~l~v~~-~~G~l~~ld~~tG~~~~~~~~--  363 (394)
T PRK11138        291 AVDGGRIYLVDQN-DRVYALDTRGGVELWSQSDL---LHRLLTAPVLYNGYLVVGD-SEGYLHWINREDGRFVAQQKV--  363 (394)
T ss_pred             EEECCEEEEEcCC-CeEEEEECCCCcEEEccccc---CCCcccCCEEECCEEEEEe-CCCEEEEEECCCCCEEEEEEc--
Confidence            5678999987643 47899999876  5875321   1111223455688998765 47889999987764  54311  


Q ss_pred             ccccCceeEEEeCCeEEEEecCCceEEEEE
Q 044903          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d  354 (387)
                      .........+..+++|||- ..++.++.++
T Consensus       364 ~~~~~~s~P~~~~~~l~v~-t~~G~l~~~~  392 (394)
T PRK11138        364 DSSGFLSEPVVADDKLLIQ-ARDGTVYAIT  392 (394)
T ss_pred             CCCcceeCCEEECCEEEEE-eCCceEEEEe
Confidence            1111122334568888887 4455666654

>PLN02772 guanylate kinase

Probab=97.99  E-value=5e-05  Score=71.04  Aligned_cols=83  Identities=16%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEEeeeC
Q 044903          184 TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG  262 (387)
Q Consensus       184 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~gg~~  262 (387)
                      .++..++++.+++++||+||..+  .....+.+++||..|.+    |....-...+..+|.+|+++++ +++|+|+++..
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d--~~~~~~~v~i~D~~t~~----W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~   96 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHE--GNTLSIGVQILDKITNN----WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS   96 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCC--CccccceEEEEECCCCc----EecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence            36777899999999999999765  23367899999999999    9988755444456677999988 67899996544


Q ss_pred             ---CeEEEEECCC
Q 044903          263 ---AEGAVYDVVA  272 (387)
Q Consensus       263 ---~~i~~yD~~~  272 (387)
                         ..++.....|
T Consensus        97 ~~~~~~w~l~~~t  109 (398)
T PLN02772         97 APDDSIWFLEVDT  109 (398)
T ss_pred             CCccceEEEEcCC
Confidence               4555554443

>PLN02772 guanylate kinase

Probab=97.95  E-value=6.6e-05  Score=70.28  Aligned_cols=69  Identities=14%  Similarity=0.098  Sum_probs=56.1

Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC---CCCCCCceeeeEEee-CCEEEEEecCCC
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG---PELVTPRRWCAAGYS-RGAVYVASGIGS  206 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l---~~~~~~r~~~~~~~~-~~~iyv~GG~~~  206 (387)
                      +..+.++++++++||+||.++ .....+.+++||..|++|...   ...|.+|..|+++++ +++|+|+++...
T Consensus        25 ~~~~tav~igdk~yv~GG~~d-~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~   97 (398)
T PLN02772         25 KNRETSVTIGDKTYVIGGNHE-GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA   97 (398)
T ss_pred             CCcceeEEECCEEEEEcccCC-CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence            334788999999999999665 233678899999999999984   567889988888888 579999987654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.94  E-value=0.0002  Score=63.04  Aligned_cols=148  Identities=12%  Similarity=0.104  Sum_probs=92.2

Q ss_pred             ccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC----CccccCeEEcC-CCCCC
Q 044903          165 RPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN----GEKNSRWEKTG-ELKDG  239 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t----~~~~~~W~~~~-~~~~~  239 (387)
                      ...+||+.|++++.+.-....-+...+..-+|++.+.||...     ....+..|++.+    ..    |.+.+ .|..+
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~----w~e~~~~m~~~  117 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCD----WTESPNDMQSG  117 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCC----ceECcccccCC
Confidence            347899999999987643333333333445889999999855     234677788876    45    98886 47766


Q ss_pred             cccccceeEE-EECCEEEEEeeeCC-eEEEEECCCC-----ceeeccc---cccCCCCCcEEEEeCCeEEEEeCCCCeEE
Q 044903          240 RFSREAIDAV-GWKGKLCLVNVKGA-EGAVYDVVAN-----TWDDMRE---GMVRGWRGPVAAMDEEVLYGIDENSCTLS  309 (387)
Q Consensus       240 ~~~~~~~~~v-~~~g~lyv~gg~~~-~i~~yD~~~~-----~W~~~~~---~~~~~~~~~~~~~~~g~ly~~g~~~~~v~  309 (387)
                      |.-   .++. .-||++.|+||... ..+.+.....     .|..+..   ..+..+.-.....-+|+||+++..  .-.
T Consensus       118 RWY---pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~  192 (243)
T PF07250_consen  118 RWY---PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSI  192 (243)
T ss_pred             Ccc---ccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcE
Confidence            642   3333 34899999999873 3344433221     2222221   122223334455678999999753  456


Q ss_pred             EEeCCCCce-EEcccccc
Q 044903          310 KYDEVMDDW-KEVVKSDL  326 (387)
Q Consensus       310 ~yd~~~~~W-~~v~~~~~  326 (387)
                      +||.+++++ +.++.+|.
T Consensus       193 i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  193 IYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             EEeCCCCeEEeeCCCCCC
Confidence            789999976 56665543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.87  E-value=0.0042  Score=61.59  Aligned_cols=282  Identities=16%  Similarity=0.101  Sum_probs=139.2

Q ss_pred             CCCCCCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCCcc--eEEEeecCCCC----CCCC-----CeEEE
Q 044903           38 DHQPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPFL--SLYALFSPKSN----SSST-----PIHLF  103 (387)
Q Consensus        38 ~~~~~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~~~--~l~~~~~~~~~----~~~~-----~~~~~  103 (387)
                      .+...+..||-|+...||..|+   +..++.||+.|+.++.+.......  .+.....+...    ....     ....+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~  182 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFY  182 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhh
Confidence            4567889999999999999999   888999999999999987664311  11111100000    0000     00000


Q ss_pred             E-EeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC-CC
Q 044903          104 T-FDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG-PE  181 (387)
Q Consensus       104 ~-~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l-~~  181 (387)
                      . .......|............. . ..+.       ..+....+..+..|- .      ...+.+||..+..-... ..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-------~~~~q~~~~~~~~~s-~------~~tl~~~~~~~~~~i~~~l~  246 (537)
T KOG0274|consen  183 RRRFRLSKNWRKLFRRGYKVLLG-T-DDHV-------VLCLQLHDGFFKSGS-D------DSTLHLWDLNNGYLILTRLV  246 (537)
T ss_pred             hhhhhccccccccccccceeecc-c-Ccch-------hhhheeecCeEEecC-C------CceeEEeecccceEEEeecc
Confidence            0 011112333322211100000 0 0000       011111111222221 1      12335777776665544 22


Q ss_pred             CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEE-Eee
Q 044903          182 LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCL-VNV  260 (387)
Q Consensus       182 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv-~gg  260 (387)
                      ............-++.+++.|..+.        ++-++|..+++    -..+-...      .....+......+. .|.
T Consensus       247 GH~g~V~~l~~~~~~~~lvsgS~D~--------t~rvWd~~sg~----C~~~l~gh------~stv~~~~~~~~~~~sgs  308 (537)
T KOG0274|consen  247 GHFGGVWGLAFPSGGDKLVSGSTDK--------TERVWDCSTGE----CTHSLQGH------TSSVRCLTIDPFLLVSGS  308 (537)
T ss_pred             CCCCCceeEEEecCCCEEEEEecCC--------cEEeEecCCCc----EEEEecCC------CceEEEEEccCceEeecc
Confidence            2222221111122355666665443        66777777776    43332111      00112222233333 344


Q ss_pred             eCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCC-e
Q 044903          261 KGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG-R  339 (387)
Q Consensus       261 ~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~-~  339 (387)
                      .+..+.++|.++..--.+-.+ ..+  ....+..++.+.+.|..++.|.+||+.+.  +-+..+..+........+++ .
T Consensus       309 ~D~tVkVW~v~n~~~l~l~~~-h~~--~V~~v~~~~~~lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~~V~sl~~~~~~  383 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGACLNLLRG-HTG--PVNCVQLDEPLLVSGSYDGTVKVWDPRTG--KCLKSLSGHTGRVYSLIVDSEN  383 (537)
T ss_pred             CCceEEEEeccCcceEEEecc-ccc--cEEEEEecCCEEEEEecCceEEEEEhhhc--eeeeeecCCcceEEEEEecCcc
Confidence            558888898886655444322 111  11223445667777777889999999844  33334434444555556677 6


Q ss_pred             EEEEecCCceEEEEEecCC
Q 044903          340 VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       340 l~v~gg~~~~i~v~d~~~~  358 (387)
                      .++-|.-+..|-++|+.+.
T Consensus       384 ~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  384 RLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             eEEeeeeccceEeecCCch
Confidence            6666666778899988853

>PF13854 Kelch_5: Kelch motif

Probab=97.87  E-value=4.3e-05  Score=47.81  Aligned_cols=41  Identities=17%  Similarity=0.230  Sum_probs=34.3

Q ss_pred             CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          182 LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       182 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      +|.+|..|++++++++|||+||... ......+++++||..+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence            4778999999999999999999973 1356778999999876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.86  E-value=0.01  Score=56.54  Aligned_cols=161  Identities=15%  Similarity=0.067  Sum_probs=92.6

Q ss_pred             ccEEEeCCCC--ceeeCCCCCCCc--------eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC
Q 044903          165 RPLIFDPICR--TWTFGPELVTPR--------RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG  234 (387)
Q Consensus       165 ~~~vydp~t~--~W~~l~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~  234 (387)
                      .++.+|+.+.  .|+.-...+...        ........++.+|+....         ..+.+||..+++..  |..-.
T Consensus       201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~~--W~~~~  269 (377)
T TIGR03300       201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRVL--WKRDA  269 (377)
T ss_pred             EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcEE--Eeecc
Confidence            5788898776  476522111111        112334557788876432         25788999888755  87642


Q ss_pred             CCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEe
Q 044903          235 ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYD  312 (387)
Q Consensus       235 ~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd  312 (387)
                        ..      ....+..++++|+.... ..+.++|..++  .|+....  ... ...+.++.+++||+.+ .++.++++|
T Consensus       270 --~~------~~~p~~~~~~vyv~~~~-G~l~~~d~~tG~~~W~~~~~--~~~-~~ssp~i~g~~l~~~~-~~G~l~~~d  336 (377)
T TIGR03300       270 --SS------YQGPAVDDNRLYVTDAD-GVVVALDRRSGSELWKNDEL--KYR-QLTAPAVVGGYLVVGD-FEGYLHWLS  336 (377)
T ss_pred             --CC------ccCceEeCCEEEEECCC-CeEEEEECCCCcEEEccccc--cCC-ccccCEEECCEEEEEe-CCCEEEEEE
Confidence              11      12345678999987533 47899998765  6875321  111 1123345678888765 578999999


Q ss_pred             CCCC--ceEEccccccccCceeEEEeCCeEEEEecCCceEEE
Q 044903          313 EVMD--DWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVV  352 (387)
Q Consensus       313 ~~~~--~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v  352 (387)
                      .++.  .|+.-  .+........+..+++||+.+ .++.++.
T Consensus       337 ~~tG~~~~~~~--~~~~~~~~sp~~~~~~l~v~~-~dG~l~~  375 (377)
T TIGR03300       337 REDGSFVARLK--TDGSGIASPPVVVGDGLLVQT-RDGDLYA  375 (377)
T ss_pred             CCCCCEEEEEE--cCCCccccCCEEECCEEEEEe-CCceEEE
Confidence            8765  34321  111111234467778888774 4445544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.85  E-value=0.017  Score=50.90  Aligned_cols=185  Identities=16%  Similarity=0.229  Sum_probs=111.3

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      .+..++.+|+..+        ...++.+|..|.+  |+.-.+  .+- .......++.+||..+.         ..+..+
T Consensus        32 ~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~~--~~~-~~~~~~~~~~v~v~~~~---------~~l~~~   91 (238)
T PF13360_consen   32 AVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDLP--GPI-SGAPVVDGGRVYVGTSD---------GSLYAL   91 (238)
T ss_dssp             EEEETTEEEEEET--------TSEEEEEETTTSEEEEEEECS--SCG-GSGEEEETTEEEEEETT---------SEEEEE
T ss_pred             EEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeecc--ccc-cceeeecccccccccce---------eeeEec
Confidence            3447888888743        2578999998874  665332  111 11147778899887621         178999


Q ss_pred             eCCCCccccCeE-EcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCC--------C
Q 044903          220 DLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWR--------G  288 (387)
Q Consensus       220 d~~t~~~~~~W~-~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~--------~  288 (387)
                      |..+++..  |+ .....+.... .......+.++.+|+... ...+.++|++++  .|+.--. .+....        .
T Consensus        92 d~~tG~~~--W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen   92 DAKTGKVL--WSIYLTSSPPAGV-RSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDIN  166 (238)
T ss_dssp             ETTTSCEE--EEEEE-SSCTCST-B--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEE
T ss_pred             ccCCccee--eeecccccccccc-ccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccc
Confidence            99988866  98 4443222211 111334444677766542 458999999876  6875432 221110        1


Q ss_pred             cEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eEEccccccccCcee-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          289 PVAAMDEEVLYGIDENSCTLSKYDEVMDD--WKEVVKSDLLKGARH-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       289 ~~~~~~~g~ly~~g~~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~-~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ...++.++.+|+... .+.+..+|.++.+  |+..     ...... ....++.||+.. ....++.+|.+++
T Consensus       167 ~~~~~~~~~v~~~~~-~g~~~~~d~~tg~~~w~~~-----~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  167 GSPVISDGRVYVSSG-DGRVVAVDLATGEKLWSKP-----ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             EEEECCTTEEEEECC-TSSEEEEETTTTEEEEEEC-----SS-ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred             cceEEECCEEEEEcC-CCeEEEEECCCCCEEEEec-----CCCccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence            234445678888864 4446666999886  7442     111222 456677787775 7899999999854

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.67  E-value=0.017  Score=55.09  Aligned_cols=194  Identities=15%  Similarity=0.188  Sum_probs=109.3

Q ss_pred             eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEE
Q 044903          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      ..+..++.+|+.+..        ..++.+|+.+.+  |+.-..-.   ...+.++.++++|+....         ..+..
T Consensus        60 ~p~v~~~~v~v~~~~--------g~v~a~d~~tG~~~W~~~~~~~---~~~~p~v~~~~v~v~~~~---------g~l~a  119 (377)
T TIGR03300        60 QPAVAGGKVYAADAD--------GTVVALDAETGKRLWRVDLDER---LSGGVGADGGLVFVGTEK---------GEVIA  119 (377)
T ss_pred             ceEEECCEEEEECCC--------CeEEEEEccCCcEeeeecCCCC---cccceEEcCCEEEEEcCC---------CEEEE
Confidence            345567888876541        358899988764  87532211   112334557778865321         26889


Q ss_pred             EeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCC-CCcEEEEeC
Q 044903          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDE  295 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~  295 (387)
                      +|..+++..  |+.-..  ...    ....+..++.+|+..+ ...+.++|++++  .|+.......... ...+.++.+
T Consensus       120 ld~~tG~~~--W~~~~~--~~~----~~~p~v~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~  190 (377)
T TIGR03300       120 LDAEDGKEL--WRAKLS--SEV----LSPPLVANGLVVVRTN-DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD  190 (377)
T ss_pred             EECCCCcEe--eeeccC--cee----ecCCEEECCEEEEECC-CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence            999888755  875432  111    1234456788887643 347899999865  6875432211111 112334556


Q ss_pred             CeEEEEeCCCCeEEEEeCCCC--ceEEcccccccc--------CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeE
Q 044903          296 EVLYGIDENSCTLSKYDEVMD--DWKEVVKSDLLK--------GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~~~~--------~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~  365 (387)
                      +.+| ++..++.+..+|+++.  .|+.-...+...        .....+..++.+|+. ..++.++.+|..++  ...|+
T Consensus       191 ~~v~-~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~-~~~g~l~a~d~~tG--~~~W~  266 (377)
T TIGR03300       191 GGVL-VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV-SYQGRVAALDLRSG--RVLWK  266 (377)
T ss_pred             CEEE-EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE-EcCCEEEEEECCCC--cEEEe
Confidence            6555 4555688999998764  586422111100        011223456777775 34567888887632  35576


Q ss_pred             Ec
Q 044903          366 VD  367 (387)
Q Consensus       366 ~~  367 (387)
                      ..
T Consensus       267 ~~  268 (377)
T TIGR03300       267 RD  268 (377)
T ss_pred             ec
Confidence            53

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.63  E-value=0.025  Score=49.86  Aligned_cols=179  Identities=20%  Similarity=0.197  Sum_probs=105.1

Q ss_pred             ccEEEeCCCC--ceeeCCCCCCCceeee--EEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          165 RPLIFDPICR--TWTFGPELVTPRRWCA--AGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       165 ~~~vydp~t~--~W~~l~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      .+..+|+.+.  .|+.-  +........  ....++.+|+..+         ...+.++|..+++..  |+.-.  +.+.
T Consensus         4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~--W~~~~--~~~~   68 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKVL--WRFDL--PGPI   68 (238)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEEE--EEEEC--SSCG
T ss_pred             EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCEE--EEeec--cccc
Confidence            4566777665  36651  111122222  4447888998842         236899999888855  87665  2221


Q ss_pred             ccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceee-ccccccC-CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903          241 FSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDD-MREGMVR-GWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD  316 (387)
Q Consensus       241 ~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~-~~~~~~~-~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~  316 (387)
                      .    ......++.+|+.... ..+.++|.+++  .|+. ....... .......++.++.+|+.. ..+.+..+|+++.
T Consensus        69 ~----~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG  142 (238)
T PF13360_consen   69 S----GAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSGKLVALDPKTG  142 (238)
T ss_dssp             G----SGEEEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCSEEEEEETTTT
T ss_pred             c----ceeeecccccccccce-eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-ccCcEEEEecCCC
Confidence            1    2247789999988633 38999998766  7983 4321111 222345555677776665 4789999998865


Q ss_pred             --ceEEccccccccC--------ceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEc
Q 044903          317 --DWKEVVKSDLLKG--------ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       317 --~W~~v~~~~~~~~--------~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~  367 (387)
                        .|+.-...++...        ...++..++.+|+..+.+. +..+|..++  ...|+..
T Consensus       143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg--~~~w~~~  200 (238)
T PF13360_consen  143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATG--EKLWSKP  200 (238)
T ss_dssp             EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTT--EEEEEEC
T ss_pred             cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCC--CEEEEec
Confidence              5776444333211        2345555788888854444 555587754  1348655

...

>PF13854 Kelch_5: Kelch motif

Probab=97.62  E-value=0.00015  Score=45.31  Aligned_cols=38  Identities=11%  Similarity=0.072  Sum_probs=31.7

Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR  174 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~  174 (387)
                      |.+|+++.++++||++||.........+++|+||..++
T Consensus         5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            77899999999999999987433567899999998763

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.54  E-value=0.0061  Score=54.40  Aligned_cols=187  Identities=21%  Similarity=0.167  Sum_probs=108.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.||+..-       ....++.+|+.+++-+.... +. ....+...-++++|++...          ...++|+.+++
T Consensus        11 ~g~l~~~D~-------~~~~i~~~~~~~~~~~~~~~-~~-~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~g~   71 (246)
T PF08450_consen   11 DGRLYWVDI-------PGGRIYRVDPDTGEVEVIDL-PG-PNGMAFDRPDGRLYVADSG----------GIAVVDPDTGK   71 (246)
T ss_dssp             TTEEEEEET-------TTTEEEEEETTTTEEEEEES-SS-EEEEEEECTTSEEEEEETT----------CEEEEETTTTE
T ss_pred             CCEEEEEEc-------CCCEEEEEECCCCeEEEEec-CC-CceEEEEccCCEEEEEEcC----------ceEEEecCCCc
Confidence            677888743       23578999999987654321 11 1111122236889988653          23666999998


Q ss_pred             cccCeEEcCCCCCC--cccccceeEEEECCEEEEEeeeC--------CeEEEEECCCCceeeccccccCCCCCcEEEEeC
Q 044903          226 KNSRWEKTGELKDG--RFSREAIDAVGWKGKLCLVNVKG--------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDE  295 (387)
Q Consensus       226 ~~~~W~~~~~~~~~--~~~~~~~~~v~~~g~lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~  295 (387)
                          ++.+...+..  ...+.+-.++.-+|.||+-.-..        ..++.+++. .+.+.+...+... .+.+....+
T Consensus        72 ----~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p-NGi~~s~dg  145 (246)
T PF08450_consen   72 ----VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP-NGIAFSPDG  145 (246)
T ss_dssp             ----EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE-EEEEEETTS
T ss_pred             ----EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc-cceEECCcc
Confidence                8888765321  11112233444578899864322        247888888 6665554433221 112222224


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCc--eEEcc---ccccccC-cee-EEEeCCeEEEEecCCceEEEEEecC
Q 044903          296 EVLYGIDENSCTLSKYDEVMDD--WKEVV---KSDLLKG-ARH-AAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~--W~~v~---~~~~~~~-~~~-~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      +.||+.....+.|++||.+...  +....   ..+...+ .-. ++--+|+|||....++.|.++|+..
T Consensus       146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred             hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence            4689988778899999886443  43322   2222221 222 3345789999877789999999983

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.52  E-value=0.0014  Score=57.72  Aligned_cols=135  Identities=10%  Similarity=0.057  Sum_probs=89.4

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---CeEEEEECCC----CceeeccccccC-CC
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVA----NTWDDMREGMVR-GW  286 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~----~~W~~~~~~~~~-~~  286 (387)
                      ...+||+.+++    ++.+.-......+   ..+..-||++.+.||..   ..+..|++..    ..|.+....|.. .|
T Consensus        47 ~s~~yD~~tn~----~rpl~v~td~FCS---gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW  119 (243)
T PF07250_consen   47 HSVEYDPNTNT----FRPLTVQTDTFCS---GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW  119 (243)
T ss_pred             EEEEEecCCCc----EEeccCCCCCccc---CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence            45789999999    9988743333211   22334589999999876   6788899865    579888754544 45


Q ss_pred             CCcEEEEeCCeEEEEeCCCCeEEEEeCCCC---ceEE---ccc----cccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903          287 RGPVAAMDEEVLYGIDENSCTLSKYDEVMD---DWKE---VVK----SDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       287 ~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~---~W~~---v~~----~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ........+|+++++||.....+.|-+...   ....   +..    .+....++..+.-+|+||+++..  ...+||..
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~~  197 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDYK  197 (243)
T ss_pred             cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeCC
Confidence            666666789999999997765555655421   1111   111    12233357777889999999643  46667888


Q ss_pred             CC
Q 044903          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      .+
T Consensus       198 ~n  199 (243)
T PF07250_consen  198 TN  199 (243)
T ss_pred             CC
Confidence            65

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.40  E-value=0.015  Score=51.82  Aligned_cols=179  Identities=18%  Similarity=0.083  Sum_probs=96.0

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-----CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-----TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      .++.+|+...         ....++|+.+++++.+...+     ..+..-.++.-+|++|+..-............+..+
T Consensus        50 ~~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~  120 (246)
T PF08450_consen   50 PDGRLYVADS---------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI  120 (246)
T ss_dssp             TTSEEEEEET---------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred             cCCEEEEEEc---------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence            3678888764         23466799999998876653     222333444446789987543321111111568888


Q ss_pred             eCCCCccccCeEEcC-CCCCCcccccceeEEEECC-EEEEEeeeCCeEEEEECCCCc--eeeccc--cccCCCC-CcEEE
Q 044903          220 DLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANT--WDDMRE--GMVRGWR-GPVAA  292 (387)
Q Consensus       220 d~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~~--W~~~~~--~~~~~~~-~~~~~  292 (387)
                      ++. .+    ...+. .+..+     +.-+..-++ .||+.......++.||+....  +.....  .+..... ...++
T Consensus       121 ~~~-~~----~~~~~~~~~~p-----NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~  190 (246)
T PF08450_consen  121 DPD-GK----VTVVADGLGFP-----NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLA  190 (246)
T ss_dssp             ETT-SE----EEEEEEEESSE-----EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE
T ss_pred             CCC-Ce----EEEEecCcccc-----cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcce
Confidence            888 55    44443 22211     122233345 588876666789999986433  332211  1111110 11233


Q ss_pred             E-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE---eCCeEEEEe
Q 044903          293 M-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA---GGGRVCAVC  344 (387)
Q Consensus       293 ~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~---~~~~l~v~g  344 (387)
                      + .+|+||+.....+.|.+||++.+.-..+..+ .. ....++.   -.+.|||..
T Consensus       191 vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p-~~-~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  191 VDSDGNLWVADWGGGRIVVFDPDGKLLREIELP-VP-RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S-SS-SEEEEEEESTTSSEEEEEE
T ss_pred             EcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC-CC-CEEEEEEECCCCCEEEEEe
Confidence            3 3688999876678999999997765555533 22 2222222   235677764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.32  E-value=0.019  Score=53.93  Aligned_cols=119  Identities=9%  Similarity=0.001  Sum_probs=75.5

Q ss_pred             eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC----C------
Q 044903          194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----A------  263 (387)
Q Consensus       194 ~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~------  263 (387)
                      .+.+|+.++..         ..+.+||..+..    =...|.+..+...   -.++.++++||++....    .      
T Consensus        75 ~gskIv~~d~~---------~~t~vyDt~t~a----v~~~P~l~~pk~~---pisv~VG~~LY~m~~~~~~~~~~~~~~~  138 (342)
T PF07893_consen   75 HGSKIVAVDQS---------GRTLVYDTDTRA----VATGPRLHSPKRC---PISVSVGDKLYAMDRSPFPEPAGRPDFP  138 (342)
T ss_pred             cCCeEEEEcCC---------CCeEEEECCCCe----EeccCCCCCCCcc---eEEEEeCCeEEEeeccCccccccCccce
Confidence            58888887544         247899999998    6666666654432   45677899999997653    1      


Q ss_pred             eEEE--EEC--------CCCceeeccccccCCCC-------CcEEEEe-CCeEEEEe-CCCCeEEEEeCCCCceEEcc--
Q 044903          264 EGAV--YDV--------VANTWDDMREGMVRGWR-------GPVAAMD-EEVLYGID-ENSCTLSKYDEVMDDWKEVV--  322 (387)
Q Consensus       264 ~i~~--yD~--------~~~~W~~~~~~~~~~~~-------~~~~~~~-~g~ly~~g-~~~~~v~~yd~~~~~W~~v~--  322 (387)
                      ..++  |++        ..-.|+.+++ ++....       -.+-+++ |..||+-. +.....+.||.++.+|++++  
T Consensus       139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW  217 (342)
T PF07893_consen  139 CFEALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDW  217 (342)
T ss_pred             eEEEeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccce
Confidence            3344  442        1227888875 232221       2233455 66777732 21225899999999999998  


Q ss_pred             ccccccC
Q 044903          323 KSDLLKG  329 (387)
Q Consensus       323 ~~~~~~~  329 (387)
                      .+|....
T Consensus       218 ~LPF~G~  224 (342)
T PF07893_consen  218 MLPFHGQ  224 (342)
T ss_pred             ecCcCCc
Confidence            4555443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.12  E-value=0.12  Score=46.83  Aligned_cols=172  Identities=17%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             CccEEEeCCCCceeeCCCC-CCCceeeeEEeeC-CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICRTWTFGPEL-VTPRRWCAAGYSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~-~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+.+||+.+++-...-.. ..++.  ....-+ ..+|+.++..        ..+.+||..+.+    ....-.....  
T Consensus        11 ~~v~~~d~~t~~~~~~~~~~~~~~~--l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~--   74 (300)
T TIGR03866        11 NTISVIDTATLEVTRTFPVGQRPRG--ITLSKDGKLLYVCASDS--------DTIQVIDLATGE----VIGTLPSGPD--   74 (300)
T ss_pred             CEEEEEECCCCceEEEEECCCCCCc--eEECCCCCEEEEEECCC--------CeEEEEECCCCc----EEEeccCCCC--
Confidence            3677788877654332111 11221  111223 3567776532        267889998877    5432111111  


Q ss_pred             cccceeEEEECC-EEEEEeeeCCeEEEEECCCCce-eeccccccCCCCCcEEE-EeCCeEEEEeCCCC-eEEEEeCCCCc
Q 044903          242 SREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAA-MDEEVLYGIDENSC-TLSKYDEVMDD  317 (387)
Q Consensus       242 ~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~-~v~~yd~~~~~  317 (387)
                      . . ..+..-++ .+|+.++....+.+||+.+.+- ..++.    +.....++ ..++++++++...+ .+..||.++.+
T Consensus        75 ~-~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~  148 (300)
T TIGR03866        75 P-E-LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE  148 (300)
T ss_pred             c-c-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence            0 1 11222244 4666655556899999987532 22221    11112223 23566666654443 46778887653


Q ss_pred             eEEccccccccCceeEEEeCCeEEEEec-CCceEEEEEecCC
Q 044903          318 WKEVVKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAA  358 (387)
Q Consensus       318 W~~v~~~~~~~~~~~~~~~~~~l~v~gg-~~~~i~v~d~~~~  358 (387)
                      -..... ............+++.+++++ .++.+.+||..+.
T Consensus       149 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       149 IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence            322111 111112223344555444443 4678889998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.05  E-value=0.23  Score=53.82  Aligned_cols=196  Identities=14%  Similarity=0.132  Sum_probs=110.4

Q ss_pred             eeEEEe--CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCC------------------CCCCceeeeEEe--eCCE
Q 044903          140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE------------------LVTPRRWCAAGY--SRGA  197 (387)
Q Consensus       140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~------------------~~~~r~~~~~~~--~~~~  197 (387)
                      +.++..  ++.|||....+       ..+.++|+.++.-+.++.                  +..|.   ..+.  .++.
T Consensus       627 ~GIavd~~gn~LYVaDt~n-------~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~---gVa~dp~~g~  696 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADTEN-------HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW---DVCFEPVNEK  696 (1057)
T ss_pred             cEEEEeCCCCEEEEEeCCC-------ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe---EEEEecCCCe
Confidence            444443  45688875421       457788887776554421                  11111   2222  2678


Q ss_pred             EEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC----------C-CcccccceeE-EEEC-CEEEEEeeeCCe
Q 044903          198 VYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK----------D-GRFSREAIDA-VGWK-GKLCLVNVKGAE  264 (387)
Q Consensus       198 iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~----------~-~~~~~~~~~~-v~~~-g~lyv~gg~~~~  264 (387)
                      +||.....        +.+.+||..++.    ......-.          . ..+. ..... +.-+ +.||+.....+.
T Consensus       697 LyVad~~~--------~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~-~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        697 VYIAMAGQ--------HQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFA-QPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             EEEEECCC--------CeEEEEECCCCe----EEEEecCCccccCCCCcccccccc-CccEEEEeCCCCEEEEEECCCCe
Confidence            99885432        267888887765    43322100          0 0000 00112 2223 459998777789


Q ss_pred             EEEEECCCCceeecccc-------c-c----CC------CCCc-EEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903          265 GAVYDVVANTWDDMREG-------M-V----RG------WRGP-VAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS  324 (387)
Q Consensus       265 i~~yD~~~~~W~~~~~~-------~-~----~~------~~~~-~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~  324 (387)
                      +.+||+.++.-..+..+       + .    .+      ...+ .++ ..+|.||+.+..++.|.+||+++.....+...
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence            99999987653321100       0 0    00      1112 222 33578999998888999999998877665422


Q ss_pred             c------------cccCceeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903          325 D------------LLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ~------------~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .            ....+..++ .-+|+|||....++.|.++|..+.
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            1            011233333 347899999777889999999865

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.04  E-value=0.08  Score=47.10  Aligned_cols=144  Identities=23%  Similarity=0.219  Sum_probs=89.4

Q ss_pred             eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC
Q 044903          194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       194 ~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      .++.+|.--|.-.      .+.+..||+.+++    =....++|..-++   -..+.++++||.+.=....+.+||+.+ 
T Consensus        54 ~~g~LyESTG~yG------~S~l~~~d~~tg~----~~~~~~l~~~~Fg---EGit~~~d~l~qLTWk~~~~f~yd~~t-  119 (264)
T PF05096_consen   54 DDGTLYESTGLYG------QSSLRKVDLETGK----VLQSVPLPPRYFG---EGITILGDKLYQLTWKEGTGFVYDPNT-  119 (264)
T ss_dssp             ETTEEEEEECSTT------EEEEEEEETTTSS----EEEEEE-TTT--E---EEEEEETTEEEEEESSSSEEEEEETTT-
T ss_pred             CCCEEEEeCCCCC------cEEEEEEECCCCc----EEEEEECCccccc---eeEEEECCEEEEEEecCCeEEEEcccc-
Confidence            4678887766522      3578899999998    6666667766554   556788999999976667889999975 


Q ss_pred             ceeeccc--cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccc------ccCceeEEEeCCeEEEEec
Q 044903          274 TWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL------LKGARHAAAGGGRVCAVCE  345 (387)
Q Consensus       274 ~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~------~~~~~~~~~~~~~l~v~gg  345 (387)
                       .+.+..  -...||   .++..+..|++-+| +..++.+||++-  +.+.....      ...---+--++|+||.=--
T Consensus       120 -l~~~~~~~y~~EGW---GLt~dg~~Li~SDG-S~~L~~~dP~~f--~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW  192 (264)
T PF05096_consen  120 -LKKIGTFPYPGEGW---GLTSDGKRLIMSDG-SSRLYFLDPETF--KEVRTIQVTDNGRPVSNLNELEYINGKIYANVW  192 (264)
T ss_dssp             -TEEEEEEE-SSS-----EEEECSSCEEEE-S-SSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETTEEEEEET
T ss_pred             -ceEEEEEecCCcce---EEEcCCCEEEEECC-ccceEEECCccc--ceEEEEEEEECCEECCCcEeEEEEcCEEEEEeC
Confidence             333331  123454   56666777777766 678999999753  33322211      1111234455788887555


Q ss_pred             CCceEEEEEecCC
Q 044903          346 NGGGIVVVDVKAA  358 (387)
Q Consensus       346 ~~~~i~v~d~~~~  358 (387)
                      ....|..+|+.++
T Consensus       193 ~td~I~~Idp~tG  205 (264)
T PF05096_consen  193 QTDRIVRIDPETG  205 (264)
T ss_dssp             TSSEEEEEETTT-
T ss_pred             CCCeEEEEeCCCC
Confidence            6788888888865

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.94  E-value=0.41  Score=47.43  Aligned_cols=205  Identities=15%  Similarity=0.177  Sum_probs=108.7

Q ss_pred             eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCCc-----eeeeEEeeC-CEEEEEecCCCCCCCCC
Q 044903          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR-----RWCAAGYSR-GAVYVASGIGSQFSSDV  212 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~r-----~~~~~~~~~-~~iyv~GG~~~~~~~~~  212 (387)
                      ..++.++.+|+....        ..++.+|..|.  .|+.-...+...     .....+..+ ++||+...         
T Consensus        56 sPvv~~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---------  118 (488)
T cd00216          56 TPLVVDGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---------  118 (488)
T ss_pred             CCEEECCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------
Confidence            345668888886541        46788898876  487633222001     011223445 78887532         


Q ss_pred             CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEee--------eCCeEEEEECCCC--ceeeccc--
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV--------KGAEGAVYDVVAN--TWDDMRE--  280 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg--------~~~~i~~yD~~~~--~W~~~~~--  280 (387)
                      ...+..+|..|.+..  |+.-..-.......-....++.++.+|+-..        ....++++|.+++  .|+.--.  
T Consensus       119 ~g~v~AlD~~TG~~~--W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~  196 (488)
T cd00216         119 DGRLVALDAETGKQV--WKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEP  196 (488)
T ss_pred             CCeEEEEECCCCCEe--eeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCC
Confidence            126788999988866  8865432210000001334566777776432        1246899999865  6874321  


Q ss_pred             -cc-cCC---------------CCCcEEEEeCCeEEEEeCCC-----------------CeEEEEeCCCC--ceEEcccc
Q 044903          281 -GM-VRG---------------WRGPVAAMDEEVLYGIDENS-----------------CTLSKYDEVMD--DWKEVVKS  324 (387)
Q Consensus       281 -~~-~~~---------------~~~~~~~~~~g~ly~~g~~~-----------------~~v~~yd~~~~--~W~~v~~~  324 (387)
                       .. ...               |..+++...++.+|+-.++.                 +.++.+|.++.  .|+.-...
T Consensus       197 ~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~  276 (488)
T cd00216         197 DPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP  276 (488)
T ss_pred             CcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC
Confidence             00 000               11111112356777764321                 36999998765  68753222


Q ss_pred             ccc---cCc--eeEEE---eCCe---EEEEecCCceEEEEEecCCCCCceeEE
Q 044903          325 DLL---KGA--RHAAA---GGGR---VCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       325 ~~~---~~~--~~~~~---~~~~---l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      +..   ...  ..+..   .++.   +++++..++.++.+|..++  ...|+.
T Consensus       277 ~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG--~~~W~~  327 (488)
T cd00216         277 HDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG--KLISAR  327 (488)
T ss_pred             CCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC--cEeeEe
Confidence            111   111  11111   2333   4555556778999999854  456875

The alignment model contains an 8-bladed beta-propeller.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00084  Score=59.82  Aligned_cols=39  Identities=26%  Similarity=0.260  Sum_probs=34.9

Q ss_pred             CCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCC
Q 044903           42 LLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP   80 (387)
Q Consensus        42 ~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~   80 (387)
                      .|-.|||||++.|++.||   +.++..|||||+++.++.+.+
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW  138 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW  138 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence            378999999999999999   777779999999999988764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.85  E-value=0.052  Score=51.04  Aligned_cols=188  Identities=11%  Similarity=0.037  Sum_probs=104.8

Q ss_pred             EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCc---eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR---RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      -+++.+|.+.     .-.++..|-.+|.  .+.++...+   ..+..+..|......+|...        -++.||..+.
T Consensus       226 plllvaG~d~-----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk--------y~ysyDle~a  290 (514)
T KOG2055|consen  226 PLLLVAGLDG-----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK--------YLYSYDLETA  290 (514)
T ss_pred             ceEEEecCCC-----cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccce--------EEEEeecccc
Confidence            4666667543     2345666777776  444433222   11222222333555555533        6799999998


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEEe
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGID  302 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g  302 (387)
                      +    -.++.++-...........|..++.+.++.|....|...-..++.|..--.  +-...   .+....+.+|++.+
T Consensus       291 k----~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~---~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  291 K----VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSD---FTFSSDSKELLASG  363 (514)
T ss_pred             c----cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEee---EEEecCCcEEEEEc
Confidence            8    777764431111011133556677777776766677777778888853211  11111   11223334556555


Q ss_pred             CCCCeEEEEeCCCCceEEcc-ccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          303 ENSCTLSKYDEVMDDWKEVV-KSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                       ..|.|++||..++.-.... ......+...|...++..+.+|...+-+-+||-.+.
T Consensus       364 -~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  364 -GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             -CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence             4679999999887322211 122334455566788888888767777888885543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.80  E-value=0.3  Score=43.04  Aligned_cols=100  Identities=14%  Similarity=0.130  Sum_probs=52.8

Q ss_pred             CEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEeC-CeEEEEeCCCCeEEEEeCCCCceEEccccccccCc
Q 044903          253 GKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDE-EVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA  330 (387)
Q Consensus       253 g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~-g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~  330 (387)
                      +.+++.++....+.+||+.+.+-. .+.. ...  .-.++.... +.+++.+..++.+.+||..+.+-  +.........
T Consensus       105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~  179 (289)
T cd00200         105 GRILSSSSRDKTIKVWDVETGKCLTTLRG-HTD--WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGHTGE  179 (289)
T ss_pred             CCEEEEecCCCeEEEEECCCcEEEEEecc-CCC--cEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc--ceeEecCccc
Confidence            456666554678999998754322 2221 111  112333333 45555554588999999874422  1111122211


Q ss_pred             -eeE-EEeCCeEEEEecCCceEEEEEecC
Q 044903          331 -RHA-AAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       331 -~~~-~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                       ..+ ..-+++.+++++.++.+.+||...
T Consensus       180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         180 VNSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             cceEEECCCcCEEEEecCCCcEEEEECCC
Confidence             122 233444666666678899999874

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.79  E-value=0.33  Score=43.14  Aligned_cols=171  Identities=12%  Similarity=0.097  Sum_probs=95.6

Q ss_pred             EEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccccccee
Q 044903          168 IFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAID  247 (387)
Q Consensus       168 vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~  247 (387)
                      ..||.++.-+..+...-.-.+-.++.-++.+|+..=.++        .+-..|+.+..    =+.++ .|....  ....
T Consensus       172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn--------aiaridp~~~~----aev~p-~P~~~~--~gsR  236 (353)
T COG4257         172 RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN--------AIARIDPFAGH----AEVVP-QPNALK--AGSR  236 (353)
T ss_pred             ecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc--------ceEEcccccCC----cceec-CCCccc--cccc
Confidence            456766655443322222234445566888887733222        23334444443    12222 222110  0011


Q ss_pred             E--EEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903          248 A--VGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKS  324 (387)
Q Consensus       248 ~--v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~  324 (387)
                      .  +--.|++.+..-....++.|||...+|.+-+- +...-+..++-+. .+++++-+-..+.|.+||+++.+.++++..
T Consensus       237 riwsdpig~~wittwg~g~l~rfdPs~~sW~eypL-Pgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p  315 (353)
T COG4257         237 RIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPL-PGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP  315 (353)
T ss_pred             ccccCccCcEEEeccCCceeeEeCcccccceeeeC-CCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence            1  11235565553223678999999999998763 1112223344333 367888776778999999999999998876


Q ss_pred             ccccCceeEEEeCCeEEEEecCCceEEEEE
Q 044903          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d  354 (387)
                      ....+...+-...|+++..-.+-..+.++.
T Consensus       316 r~n~gn~ql~gr~ge~W~~e~gvd~lv~~r  345 (353)
T COG4257         316 RPNSGNIQLDGRPGELWFTEAGVDALVTTR  345 (353)
T ss_pred             CCCCCceeccCCCCceeecccCcceeEEEE
Confidence            666666667777777777633334455443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.78  E-value=0.081  Score=48.37  Aligned_cols=144  Identities=14%  Similarity=0.126  Sum_probs=93.7

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEc-CCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-GELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~-~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      ++.+.+.||.++        ...+++..++.    |--. +.-....    .+.+..++|.+.+.|+....+.+++..++
T Consensus        75 ~~~l~aTGGgDD--------~AflW~~~~ge----~~~eltgHKDSV----t~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   75 NNNLVATGGGDD--------LAFLWDISTGE----FAGELTGHKDSV----TCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             CCceEEecCCCc--------eEEEEEccCCc----ceeEecCCCCce----EEEEEccCceEEEecCCCccEEEEEcccC
Confidence            567788888765        56888888887    6432 2111111    14455678888888888888888888765


Q ss_pred             --ceeeccccccCCCC-CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceE
Q 044903          274 --TWDDMREGMVRGWR-GPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGI  350 (387)
Q Consensus       274 --~W~~~~~~~~~~~~-~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i  350 (387)
                        +|......-..-|- .+.    .+.+++.|..+|.+|+|...+..-.++..-+.....++.+.-+||..+.|..++.+
T Consensus       139 ~~~~~~~~e~~dieWl~WHp----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti  214 (399)
T KOG0296|consen  139 GEQWKLDQEVEDIEWLKWHP----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI  214 (399)
T ss_pred             ceEEEeecccCceEEEEecc----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence              78765321111121 111    24577788889999999998874444433333333455666778888887788899


Q ss_pred             EEEEecCC
Q 044903          351 VVVDVKAA  358 (387)
Q Consensus       351 ~v~d~~~~  358 (387)
                      .+||+.++
T Consensus       215 ~~Wn~ktg  222 (399)
T KOG0296|consen  215 IVWNPKTG  222 (399)
T ss_pred             EEEecCCC
Confidence            99999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.76  E-value=0.063  Score=50.76  Aligned_cols=176  Identities=11%  Similarity=0.033  Sum_probs=93.3

Q ss_pred             ccEEEeCCCCceee-CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          165 RPLIFDPICRTWTF-GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       165 ~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      .+-.|+..+..-.+ +.... .-.+.+....+|++..+|+...        .+.+||..+...   -+.+..-.   .+.
T Consensus        49 rvqly~~~~~~~~k~~srFk-~~v~s~~fR~DG~LlaaGD~sG--------~V~vfD~k~r~i---LR~~~ah~---apv  113 (487)
T KOG0310|consen   49 RVQLYSSVTRSVRKTFSRFK-DVVYSVDFRSDGRLLAAGDESG--------HVKVFDMKSRVI---LRQLYAHQ---APV  113 (487)
T ss_pred             EEEEEecchhhhhhhHHhhc-cceeEEEeecCCeEEEccCCcC--------cEEEeccccHHH---HHHHhhcc---Cce
Confidence            45566665544333 11111 1112333344789999988654        688999555220   11111001   111


Q ss_pred             cceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccc-cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcc
Q 044903          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE-GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVV  322 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~-~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~  322 (387)
                      ....-...++.+++.|+.+..+..+|..+..= .... +-..-.+.....-.++.|.+.|+.++.|..||..... ..+.
T Consensus       114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~  191 (487)
T KOG0310|consen  114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVV  191 (487)
T ss_pred             eEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeE
Confidence            11222346888999888877777777776652 2211 1111111222233456799999999999999998773 3322


Q ss_pred             ccccccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          323 KSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       323 ~~~~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +...... .-.++.-+|.+++. .+|+.+-|||+.++
T Consensus       192 elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G  227 (487)
T KOG0310|consen  192 ELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLTTG  227 (487)
T ss_pred             EecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEecCC
Confidence            3221111 11233444455555 45778888888854

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.71  E-value=0.44  Score=43.08  Aligned_cols=182  Identities=16%  Similarity=0.041  Sum_probs=86.1

Q ss_pred             EEEEEcCccCCCCCCCCccEEEeCCCCceee-CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCcc
Q 044903          148 KLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~  226 (387)
                      .+|+.++.       .+.+.+||..+.+... ++....++ ..+....++.+|+.++.+        ..+.+||..+.+.
T Consensus        44 ~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~~  107 (300)
T TIGR03866        44 LLYVCASD-------SDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDD--------NLVTVIDIETRKV  107 (300)
T ss_pred             EEEEEECC-------CCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCC--------CeEEEEECCCCeE
Confidence            45666542       2467889998877654 33211221 111112234566665422        2688899887651


Q ss_pred             ccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-CeEEEEECCCCceee-ccccccCCCCCcEEE-EeCCe-EEEEe
Q 044903          227 NSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDD-MREGMVRGWRGPVAA-MDEEV-LYGID  302 (387)
Q Consensus       227 ~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~-~~~g~-ly~~g  302 (387)
                         -..++   .....  ...+..-+|.+++++... ..+..||..+.+-.. +..    +.....++ ..+++ +++.+
T Consensus       108 ---~~~~~---~~~~~--~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       108 ---LAEIP---VGVEP--EGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----DQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             ---EeEee---CCCCc--ceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----CCCccEEEECCCCCEEEEEc
Confidence               12221   11000  011222356666665443 456677876653221 111    11111222 22444 44444


Q ss_pred             CCCCeEEEEeCCCCceEE-ccc-ccc----ccCceeE-EEeCCe-EEEEecCCceEEEEEecC
Q 044903          303 ENSCTLSKYDEVMDDWKE-VVK-SDL----LKGARHA-AAGGGR-VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~-v~~-~~~----~~~~~~~-~~~~~~-l~v~gg~~~~i~v~d~~~  357 (387)
                      ..++.+.+||.++.+... +.. .+.    ......+ +.-+++ +|+..+.+..+.+||..+
T Consensus       176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            457889999998764322 211 010    0011122 233444 455545556788888763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.64  E-value=0.43  Score=42.05  Aligned_cols=171  Identities=13%  Similarity=0.105  Sum_probs=81.4

Q ss_pred             CccEEEeCCCCceee-CCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICRTWTF-GPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+.+||..+++-.. +....  ....+.... ++++++.++.+.        .+.+||..+.+.   -..+......  
T Consensus        73 ~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~---~~~~~~~~~~--  137 (289)
T cd00200          73 KTIRLWDLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDK--------TIKVWDVETGKC---LTTLRGHTDW--  137 (289)
T ss_pred             CeEEEEEcCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCCC--------eEEEEECCCcEE---EEEeccCCCc--
Confidence            467888887653221 11111  011112222 245666655322        678888875541   1222211111  


Q ss_pred             cccceeEEEEC-CEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCce
Q 044903          242 SREAIDAVGWK-GKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDW  318 (387)
Q Consensus       242 ~~~~~~~v~~~-g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W  318 (387)
                         ........ +.+++.+.....+.+||..+.+ -..+..  ... .-.++... +++.+++++.++.+.+||..+..-
T Consensus       138 ---i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  211 (289)
T cd00200         138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG--HTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC  211 (289)
T ss_pred             ---EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec--Ccc-ccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence               02222222 4554444435788999987442 122211  110 11223332 343555555688999999976433


Q ss_pred             EEcccccccc-CceeEEEe-CCeEEEEecCCceEEEEEecC
Q 044903          319 KEVVKSDLLK-GARHAAAG-GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       319 ~~v~~~~~~~-~~~~~~~~-~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ..  ...... ....+... ++.+++.++.++.+.+||...
T Consensus       212 ~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         212 LG--TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             ec--chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            22  221111 12223333 356666655588899999884

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.63  E-value=0.59  Score=43.53  Aligned_cols=179  Identities=12%  Similarity=0.006  Sum_probs=88.2

Q ss_pred             CccEEEeCCC-CceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCC-CCccccCeEEcCCCCCC
Q 044903          164 TRPLIFDPIC-RTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vydp~t-~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~-t~~~~~~W~~~~~~~~~  239 (387)
                      ..+.+||..+ .+++.+...+........+.  -+..+|+.+...        ..+.+|+.. +++    +..+...+.+
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~--------~~i~~~~~~~~g~----l~~~~~~~~~   79 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE--------FRVLSYRIADDGA----LTFAAESPLP   79 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC--------CcEEEEEECCCCc----eEEeeeecCC
Confidence            4567777754 45655443332211111121  234567754321        356677765 445    6555433322


Q ss_pred             cccccceeEEEECCE-EEEEeeeCCeEEEEECCCC-ce-eeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCC
Q 044903          240 RFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVAN-TW-DDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEV  314 (387)
Q Consensus       240 ~~~~~~~~~v~~~g~-lyv~gg~~~~i~~yD~~~~-~W-~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~  314 (387)
                      ...  .+.+..-+|+ +|+.+.....+.+||++++ .- +.+.. .......+.+++.  ++.+|+.....+.|.+||.+
T Consensus        80 ~~p--~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         80 GSP--THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             CCc--eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            111  1222222454 6666544578889988643 11 11211 1111112233332  34677777667889999997


Q ss_pred             CC-ceEEcc----ccccccCceeEEE-e-CCeEEEEecCCceEEEEEecC
Q 044903          315 MD-DWKEVV----KSDLLKGARHAAA-G-GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       315 ~~-~W~~v~----~~~~~~~~~~~~~-~-~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ++ ......    ..+...+...++. - +..+|+....++.+.+||+..
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            63 222110    1111222333333 2 346778866688999999873

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.63  E-value=0.37  Score=45.39  Aligned_cols=230  Identities=19%  Similarity=0.188  Sum_probs=119.0

Q ss_pred             CCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEE--EeCCCCc
Q 044903           98 TPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLI--FDPICRT  175 (387)
Q Consensus        98 ~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v--ydp~t~~  175 (387)
                      ..+..+.||..+.++..+......       .+|+|      ......++.||+.....    .....+..  .+..+.+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~-------~~Ps~------l~~~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g~   75 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEG-------ENPSW------LAVSPDGRRLYVVNEGS----GDSGGVSSYRIDPDTGT   75 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEES-------SSECC------EEE-TTSSEEEEEETTS----STTTEEEEEEEETTTTE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCC-------CCCce------EEEEeCCCEEEEEEccc----cCCCCEEEEEECCCcce
Confidence            456677788899888766542221       11222      12222456788875432    12244544  4555567


Q ss_pred             eeeCCCCC-CCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEc---------CCCCCCcccc
Q 044903          176 WTFGPELV-TPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT---------GELKDGRFSR  243 (387)
Q Consensus       176 W~~l~~~~-~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~---------~~~~~~~~~~  243 (387)
                      .+.+...+ ....-+..+.  -+..+||+.-.+        ..+.+|+...+-.   =...         .+-+......
T Consensus        76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~--------g~v~v~~l~~~g~---l~~~~~~~~~~g~g~~~~rq~~~  144 (345)
T PF10282_consen   76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG--------GSVSVFPLDDDGS---LGEVVQTVRHEGSGPNPDRQEGP  144 (345)
T ss_dssp             EEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTSE---EEEEEEEEESEEEESSTTTTSST
T ss_pred             eEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--------CeEEEEEccCCcc---cceeeeecccCCCCCcccccccc
Confidence            77766555 2332222332  245677764222        2567777665320   1111         0111111222


Q ss_pred             cceeEEEE-CC-EEEEEeeeCCeEEEEECCCCc--eeecccc-ccCCCCCc-EEEEe--CCeEEEEeCCCCeEEEEeCC-
Q 044903          244 EAIDAVGW-KG-KLCLVNVKGAEGAVYDVVANT--WDDMREG-MVRGWRGP-VAAMD--EEVLYGIDENSCTLSKYDEV-  314 (387)
Q Consensus       244 ~~~~~v~~-~g-~lyv~gg~~~~i~~yD~~~~~--W~~~~~~-~~~~~~~~-~~~~~--~g~ly~~g~~~~~v~~yd~~-  314 (387)
                      ..|.+..- +| .+|+..-....+.+|+...+.  ....... .+.+. ++ .+++.  +..+|++...++.|.+|+.. 
T Consensus       145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence            33544444 34 466654333789999887665  5443211 22222 23 33332  35799999888888887665 


Q ss_pred             -CCceEEcccc---cc-cc---CceeEEEe--CCeEEEEecCCceEEEEEec
Q 044903          315 -MDDWKEVVKS---DL-LK---GARHAAAG--GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       315 -~~~W~~v~~~---~~-~~---~~~~~~~~--~~~l~v~gg~~~~i~v~d~~  356 (387)
                       +..++.+...   |. ..   ....++..  +..|||...+.+.|.+|++.
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence             6677776532   22 11   12333333  45688887778899999995

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.58  E-value=0.64  Score=43.31  Aligned_cols=181  Identities=14%  Similarity=0.035  Sum_probs=86.3

Q ss_pred             CccEEEeCC-CCceeeCCCCCCCce-eeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          164 TRPLIFDPI-CRTWTFGPELVTPRR-WCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vydp~-t~~W~~l~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      ..+.+|+.. +.+++.+...+.+.. .+.+.. -+..+|+..-.        ...+.+||..++...  ...+...+...
T Consensus        57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~--------~~~v~v~~~~~~g~~--~~~~~~~~~~~  126 (330)
T PRK11028         57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN--------ANCVSVSPLDKDGIP--VAPIQIIEGLE  126 (330)
T ss_pred             CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC--------CCeEEEEEECCCCCC--CCceeeccCCC
Confidence            556667665 455655433332211 122222 23457776422        236777887643200  12222111111


Q ss_pred             ccccceeEEEE-CC-EEEEEeeeCCeEEEEECCCC-ceeecc---ccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEe
Q 044903          241 FSREAIDAVGW-KG-KLCLVNVKGAEGAVYDVVAN-TWDDMR---EGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYD  312 (387)
Q Consensus       241 ~~~~~~~~v~~-~g-~lyv~gg~~~~i~~yD~~~~-~W~~~~---~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd  312 (387)
                         ..+.++.. +| .+|+.+.....+.+||..++ .-....   ...+.+.....+++.  +..+|+....++.|.+||
T Consensus       127 ---~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~  203 (330)
T PRK11028        127 ---GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ  203 (330)
T ss_pred             ---cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence               11333232 44 56666555588999998763 222110   001112111223332  346888876678899998


Q ss_pred             CC--CCceEEccc---ccc----ccCceeEE-EeCC-eEEEEecCCceEEEEEecC
Q 044903          313 EV--MDDWKEVVK---SDL----LKGARHAA-AGGG-RVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       313 ~~--~~~W~~v~~---~~~----~~~~~~~~-~~~~-~l~v~gg~~~~i~v~d~~~  357 (387)
                      .+  +.+.+.+..   .|.    .+....+. .-+| .+|+.....+.|.+||+..
T Consensus       204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            76  345554432   221    11111122 2244 5777655567888898863

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.55  E-value=0.91  Score=49.33  Aligned_cols=195  Identities=14%  Similarity=0.120  Sum_probs=105.2

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC----------CCc--eeeeEEee--CCEEEEEecCCCCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV----------TPR--RWCAAGYS--RGAVYVASGIGSQFSS  210 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~----------~~r--~~~~~~~~--~~~iyv~GG~~~~~~~  210 (387)
                      .++.+||..-       ..+.+.++|+..+.=..+....          ..+  .-+..++.  ++.|||+-..+     
T Consensus       578 ~~g~lyVaDs-------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----  645 (1057)
T PLN02919        578 LNNRLFISDS-------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----  645 (1057)
T ss_pred             CCCeEEEEEC-------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----
Confidence            4678888753       2357888888655332332210          001  01223332  46789985432     


Q ss_pred             CCCceEEEEeCCCCccccCeEEcCCCC-------CC-----cccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCcee
Q 044903          211 DVAKSVEKWDLMNGEKNSRWEKTGELK-------DG-----RFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWD  276 (387)
Q Consensus       211 ~~~~~v~vyd~~t~~~~~~W~~~~~~~-------~~-----~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~  276 (387)
                         ..+.++|+.++.    =+.+..-.       ..     .........++-  ++.+|+.....+.+.+||+.++...
T Consensus       646 ---~~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~  718 (1057)
T PLN02919        646 ---HALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR  718 (1057)
T ss_pred             ---ceEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence               256778877665    43332100       00     000001222222  6789988766678999999877654


Q ss_pred             eccc-cc----------cCCCCCc-EEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcc-ccc----------------
Q 044903          277 DMRE-GM----------VRGWRGP-VAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVV-KSD----------------  325 (387)
Q Consensus       277 ~~~~-~~----------~~~~~~~-~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~-~~~----------------  325 (387)
                      .+.. +.          ......+ .+++.  ++.||+.+..++.|.+||+++..-+.+. ..+                
T Consensus       719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g  798 (1057)
T PLN02919        719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG  798 (1057)
T ss_pred             EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence            3321 00          0001112 23322  3469999888889999999876533221 000                


Q ss_pred             ---cccCceeE-EEeCCeEEEEecCCceEEEEEecCC
Q 044903          326 ---LLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       326 ---~~~~~~~~-~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                         ....+.++ +.-+|.|||....++.|.++|+.+.
T Consensus       799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence               01122333 3456789999878899999998744

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.53  E-value=0.53  Score=41.84  Aligned_cols=218  Identities=17%  Similarity=0.123  Sum_probs=123.5

Q ss_pred             EEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEE-eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCC
Q 044903          103 FTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE  181 (387)
Q Consensus       103 ~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~  181 (387)
                      -.+||.+++-...|.-..                ...|.+++ -++..++.-+.        ..+..+|++|...++.+-
T Consensus        86 GhLdP~tGev~~ypLg~G----------------a~Phgiv~gpdg~~Witd~~--------~aI~R~dpkt~evt~f~l  141 (353)
T COG4257          86 GHLDPATGEVETYPLGSG----------------ASPHGIVVGPDGSAWITDTG--------LAIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             eecCCCCCceEEEecCCC----------------CCCceEEECCCCCeeEecCc--------ceeEEecCcccceEEeec
Confidence            347888877666654333                11244444 46677776442        256888999888777531


Q ss_pred             -CCCCceeeeEEeeC--CEEEEEecCCCCC-CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEE
Q 044903          182 -LVTPRRWCAAGYSR--GAVYVASGIGSQF-SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCL  257 (387)
Q Consensus       182 -~~~~r~~~~~~~~~--~~iyv~GG~~~~~-~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv  257 (387)
                       ...+-......+.+  +.++..|-.+... -....+.+++|+.-.+.             ..    ...++.-+|.+|+
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------gp----yGi~atpdGsvwy  204 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------GP----YGICATPDGSVWY  204 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-------------CC----cceEECCCCcEEE
Confidence             11222333444443  5787776543310 01123344444332111             11    1234456899998


Q ss_pred             EeeeCCeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE-
Q 044903          258 VNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-  334 (387)
Q Consensus       258 ~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-  334 (387)
                      ..-.++.|...|+.+..=+.++.  ....+.+...+- .-|++++.....+.+.+||+.+..|.+-.-+........+. 
T Consensus       205 aslagnaiaridp~~~~aev~p~P~~~~~gsRriwsd-pig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV  283 (353)
T COG4257         205 ASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSD-PIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV  283 (353)
T ss_pred             EeccccceEEcccccCCcceecCCCcccccccccccC-ccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee
Confidence            87667788888888775555542  223333322222 23678888766789999999999999976443333333333 


Q ss_pred             EeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          335 AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       335 ~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      --.|++++---..+.|.-+|+.+.    .+++
T Consensus       284 D~~grVW~sea~agai~rfdpeta----~ftv  311 (353)
T COG4257         284 DRHGRVWLSEADAGAIGRFDPETA----RFTV  311 (353)
T ss_pred             ccCCcEEeeccccCceeecCcccc----eEEE
Confidence            334666664334566777787765    5666

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=96.49  E-value=0.063  Score=42.65  Aligned_cols=74  Identities=11%  Similarity=0.029  Sum_probs=54.2

Q ss_pred             EEECCEEEEEeee----CCeEEEEECCCCceeecccc--ccCCCCCcEEEEeCCeEEEEeCCC----C--eEEEE-eCCC
Q 044903          249 VGWKGKLCLVNVK----GAEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENS----C--TLSKY-DEVM  315 (387)
Q Consensus       249 v~~~g~lyv~gg~----~~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~~----~--~v~~y-d~~~  315 (387)
                      +.+||.+|.+...    ...+.+||+++++|+.++..  .........++..+|+|-++....    .  +||+. |.++
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k   81 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK   81 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence            5789999988765    27899999999999988752  233344667888899998886432    2  24444 6778


Q ss_pred             CceEEcc
Q 044903          316 DDWKEVV  322 (387)
Q Consensus       316 ~~W~~v~  322 (387)
                      .+|++..
T Consensus        82 ~~Wsk~~   88 (129)
T PF08268_consen   82 QEWSKKH   88 (129)
T ss_pred             ceEEEEE
Confidence            8999864

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.48  E-value=0.064  Score=48.75  Aligned_cols=110  Identities=17%  Similarity=0.152  Sum_probs=75.7

Q ss_pred             eeEEEECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903          246 IDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS  324 (387)
Q Consensus       246 ~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~  324 (387)
                      .-.|-++.+ |++...+ ..+.+++..+......-.+-   .++.+...+.|++.+-|..+.+|..||.+...--.+  +
T Consensus       323 VNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~gH---kRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRv--L  396 (499)
T KOG0281|consen  323 VNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGH---KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--L  396 (499)
T ss_pred             eeeeccccc-eEEEecCCceEEEEeccceeeehhhhcc---cccceehhccCeEEEecCCCceEEEEeccccHHHHH--H
Confidence            334557788 6665444 67888888777665443222   234555677899999988889999999987643222  2


Q ss_pred             ccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCC
Q 044903          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAP  361 (387)
Q Consensus       325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~  361 (387)
                      ........++..+++=.|-|+.++.|-|||..++..+
T Consensus       397 eGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  397 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             hchHHhhhheeecCceeeeccccceEEEEecccccCC
Confidence            2233345678889999999888999999999876444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.37  E-value=0.068  Score=47.54  Aligned_cols=103  Identities=12%  Similarity=0.024  Sum_probs=69.4

Q ss_pred             ECCEEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          251 WKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       251 ~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      .+|.||--.|..  ..+..||+++++=..... ++....+-.+++.+++||.+.-.++..++||.++  .+.+...+-..
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~  130 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-LPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG  130 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEETTEEEEEESSSSEEEEEETTT--TEEEEEEE-SS
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-CCccccceeEEEECCEEEEEEecCCeEEEEcccc--ceEEEEEecCC
Confidence            578999776544  789999999987543333 4555566778888999999998889999999975  56666554444


Q ss_pred             CceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          329 GARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ...+++.. |+-+++..++..++.+|+.+
T Consensus       131 EGWGLt~d-g~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  131 EGWGLTSD-GKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             S--EEEEC-SSCEEEE-SSSEEEEE-TTT
T ss_pred             cceEEEcC-CCEEEEECCccceEEECCcc
Confidence            45556644 44455546678889999874

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.34  E-value=0.43  Score=43.31  Aligned_cols=114  Identities=22%  Similarity=0.334  Sum_probs=69.8

Q ss_pred             EEEEecCCCCCCCC-CCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEEeeeC------CeEEEEE
Q 044903          198 VYVASGIGSQFSSD-VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG------AEGAVYD  269 (387)
Q Consensus       198 iyv~GG~~~~~~~~-~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~gg~~------~~i~~yD  269 (387)
                      |||.|-...  .+. .+..+..||..+.+    |.....=-.+    .-...... +++||+.|-..      ..+..||
T Consensus         1 v~VGG~F~~--aGsL~C~~lC~yd~~~~q----W~~~g~~i~G----~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd   70 (281)
T PF12768_consen    1 VYVGGSFTS--AGSLPCPGLCLYDTDNSQ----WSSPGNGISG----TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYD   70 (281)
T ss_pred             CEEeeecCC--CCCcCCCEEEEEECCCCE----eecCCCCceE----EEEEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence            355555544  222 47789999999999    9998743211    11233333 67888876533      6788999


Q ss_pred             CCCCceeeccccccCCCCCcE--EEE---eCCeEEEEeC-CCC--eEEEEeCCCCceEEccc
Q 044903          270 VVANTWDDMREGMVRGWRGPV--AAM---DEEVLYGIDE-NSC--TLSKYDEVMDDWKEVVK  323 (387)
Q Consensus       270 ~~~~~W~~~~~~~~~~~~~~~--~~~---~~g~ly~~g~-~~~--~v~~yd~~~~~W~~v~~  323 (387)
                      .++++|..++........++.  ..+   ....+++-|. ..+  .+..|  +..+|..+..
T Consensus        71 ~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   71 FKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             cCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence            999999988763312222332  222   2345776664 223  36667  4568999876

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.29  E-value=1  Score=42.36  Aligned_cols=63  Identities=14%  Similarity=0.144  Sum_probs=39.2

Q ss_pred             eCCeEEEEe-C--------CCCeEEEEeCCCCceEEccccccccCceeEE-EeC-C-eEEEEecCCceEEEEEecCC
Q 044903          294 DEEVLYGID-E--------NSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGG-G-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~g~ly~~g-~--------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~-~-~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .++++|+.. +        ..+.|+++|.++.  +.+...+.......++ .-+ . .+|+..+.++.+.++|..+.
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECCCC--eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            367899842 2        1257999998655  4554444434443333 334 4 56667666788999999854

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.12  E-value=0.21  Score=47.15  Aligned_cols=114  Identities=9%  Similarity=0.068  Sum_probs=73.1

Q ss_pred             CCE-EEEEeeeCCeEEEEECCCCceeecccc--ccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          252 KGK-LCLVNVKGAEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       252 ~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      +|. ..+.+|....+++||+++.+-+.+...  +.......--+..++...++.|..|.|.+...+++.|..-..++...
T Consensus       268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v  347 (514)
T KOG2055|consen  268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVV  347 (514)
T ss_pred             CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEE
Confidence            555 666677777899999999888877632  22111122233445666677778899999999999887644444333


Q ss_pred             CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      ..++.. .+++.+++.++.+.++++|+...---..|..
T Consensus       348 ~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D  384 (514)
T KOG2055|consen  348 SDFTFS-SDSKELLASGGTGEVYVWNLRQNSCLHRFVD  384 (514)
T ss_pred             eeEEEe-cCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence            334333 4555555556666999999996522355664

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.09  E-value=0.13  Score=48.78  Aligned_cols=121  Identities=11%  Similarity=0.062  Sum_probs=75.0

Q ss_pred             ECCEEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc-
Q 044903          251 WKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK-  328 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~-  328 (387)
                      -||+|...|+....+.+||..+. .-+.+... ........-...++.+++.+++++.+..||..+..-  +.....+. 
T Consensus        78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htD  154 (487)
T KOG0310|consen   78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTD  154 (487)
T ss_pred             cCCeEEEccCCcCcEEEeccccHHHHHHHhhc-cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcc
Confidence            47999999988889999995542 11121110 000001111235788999988778888889988762  21222222 


Q ss_pred             --CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCceeeEE
Q 044903          329 --GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSV  377 (387)
Q Consensus       329 --~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~~~~~~  377 (387)
                        ....+...++.|++.||.++.|-+||....   +.|....-.|.-+=.|
T Consensus       155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~---~~~v~elnhg~pVe~v  202 (487)
T KOG0310|consen  155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSL---TSRVVELNHGCPVESV  202 (487)
T ss_pred             eeEeeccccCCCeEEEecCCCceEEEEEeccC---CceeEEecCCCceeeE
Confidence              233455667889999999999999999965   3566544444433333

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.08  E-value=1  Score=42.39  Aligned_cols=149  Identities=16%  Similarity=0.146  Sum_probs=80.9

Q ss_pred             CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC--CCCCCcccccceeEEEEC-CEEEEEeeeCCeEEEEECC-
Q 044903          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGWK-GKLCLVNVKGAEGAVYDVV-  271 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~--~~~~~~~~~~~~~~v~~~-g~lyv~gg~~~~i~~yD~~-  271 (387)
                      ..+||..-        ..+.+.+|+...+...  .....  .++...-+ + |.+..-+ ..+|+++...+.+.+|+.. 
T Consensus       156 ~~v~v~dl--------G~D~v~~~~~~~~~~~--l~~~~~~~~~~G~GP-R-h~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  156 RFVYVPDL--------GADRVYVYDIDDDTGK--LTPVDSIKVPPGSGP-R-HLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             SEEEEEET--------TTTEEEEEEE-TTS-T--EEEEEEEECSTTSSE-E-EEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CEEEEEec--------CCCEEEEEEEeCCCce--EEEeeccccccCCCC-c-EEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence            46777632        1347788877665411  33322  22222111 1 3233324 3689998777788888776 


Q ss_pred             -CCceeeccc--cccCCCC----CcEEEEe--CCeEEEEeCCCCeEEEEeC--CCCceEEccccccc-cCc--eeEEEeC
Q 044903          272 -ANTWDDMRE--GMVRGWR----GPVAAMD--EEVLYGIDENSCTLSKYDE--VMDDWKEVVKSDLL-KGA--RHAAAGG  337 (387)
Q Consensus       272 -~~~W~~~~~--~~~~~~~----~~~~~~~--~g~ly~~g~~~~~v~~yd~--~~~~W~~v~~~~~~-~~~--~~~~~~~  337 (387)
                       +..++.+..  ..+.+..    ...+++.  +..||+-....+.|.+|+.  ++.+.+.+...+.. ..+  +.+...+
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG  303 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred             cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence             556655441  1222221    2233333  4568887766678888876  45567766654431 112  3333356


Q ss_pred             CeEEEEecCCceEEEEEec
Q 044903          338 GRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       338 ~~l~v~gg~~~~i~v~d~~  356 (387)
                      ..|||.+..++.|.+|+++
T Consensus       304 ~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEecCCCeEEEEEEe
Confidence            6677777778899999876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.07  E-value=0.54  Score=43.71  Aligned_cols=133  Identities=12%  Similarity=0.088  Sum_probs=81.7

Q ss_pred             ceEEEEeCCCC-----ccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCC
Q 044903          214 KSVEKWDLMNG-----EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWR  287 (387)
Q Consensus       214 ~~v~vyd~~t~-----~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~  287 (387)
                      ..+.+|+....     +    .+.+.......   ...+.+.++|++.+.  .+..+.+|+...+. +..... ......
T Consensus        62 Gri~v~~i~~~~~~~~~----l~~i~~~~~~g---~V~ai~~~~~~lv~~--~g~~l~v~~l~~~~~l~~~~~-~~~~~~  131 (321)
T PF03178_consen   62 GRILVFEISESPENNFK----LKLIHSTEVKG---PVTAICSFNGRLVVA--VGNKLYVYDLDNSKTLLKKAF-YDSPFY  131 (321)
T ss_dssp             EEEEEEEECSS-----E----EEEEEEEEESS----EEEEEEETTEEEEE--ETTEEEEEEEETTSSEEEEEE-E-BSSS
T ss_pred             cEEEEEEEEcccccceE----EEEEEEEeecC---cceEhhhhCCEEEEe--ecCEEEEEEccCcccchhhhe-ecceEE
Confidence            56888988884     4    55554332211   125566778885443  33689999998887 776653 223334


Q ss_pred             CcEEEEeCCeEEEEeCCCC-eEEEEeCCCCceEEccccccccCceeEEEe-CCeEEEEecCCceEEEEEec
Q 044903          288 GPVAAMDEEVLYGIDENSC-TLSKYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       288 ~~~~~~~~g~ly~~g~~~~-~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ..++.+.++.|++-+...+ .++.|+.+..+-..+..........++..+ ++..++++-..+++.++...
T Consensus       132 i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  132 ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            5567778887776654333 467788877778887765554444445555 55666665567888777665

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PTZ00421 coronin; Provisional

Probab=96.00  E-value=1.8  Score=42.80  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=72.9

Q ss_pred             CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCce
Q 044903          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW  275 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W  275 (387)
                      +.+++.||.+.        .+.+||..+.+.   -..+.......    ...+..-+|.+.+.++.+..+.+||+.+++=
T Consensus       138 ~~iLaSgs~Dg--------tVrIWDl~tg~~---~~~l~~h~~~V----~sla~spdG~lLatgs~Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        138 MNVLASAGADM--------VVNVWDVERGKA---VEVIKCHSDQI----TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI  202 (493)
T ss_pred             CCEEEEEeCCC--------EEEEEECCCCeE---EEEEcCCCCce----EEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence            35666766544        688999887761   12222111111    0112223677777777778899999987642


Q ss_pred             -eeccccccCCCCCcEEE-Ee-CCeEEEEeC---CCCeEEEEeCCCCceEEccccc-cccCce--eEEEeCCeEEEEec-
Q 044903          276 -DDMREGMVRGWRGPVAA-MD-EEVLYGIDE---NSCTLSKYDEVMDDWKEVVKSD-LLKGAR--HAAAGGGRVCAVCE-  345 (387)
Q Consensus       276 -~~~~~~~~~~~~~~~~~-~~-~g~ly~~g~---~~~~v~~yd~~~~~W~~v~~~~-~~~~~~--~~~~~~~~l~v~gg-  345 (387)
                       ..+..  ..+.....++ .. ++.+...|.   .++.|.+||..+..-. +.... ......  .....++.++++|| 
T Consensus       203 v~tl~~--H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        203 VSSVEA--HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             EEEEec--CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence             12211  1110001111 12 234444442   3568999998643211 11000 011111  12233566666666 


Q ss_pred             CCceEEEEEecCC
Q 044903          346 NGGGIVVVDVKAA  358 (387)
Q Consensus       346 ~~~~i~v~d~~~~  358 (387)
                      +++.|.+||+.++
T Consensus       280 gDg~Iriwdl~~~  292 (493)
T PTZ00421        280 GEGNIRCFELMNE  292 (493)
T ss_pred             CCCeEEEEEeeCC
Confidence            4778999999854

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.97  E-value=1.2  Score=47.21  Aligned_cols=171  Identities=12%  Similarity=0.034  Sum_probs=90.6

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+.+||..+++-...-..... .-.+.+.  .++.+++.||.+.        .+.+||..+...   ...+.. ..   
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~~~~---~~~~~~-~~---  618 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEK-RVWSIDYSSADPTLLASGSDDG--------SVKLWSINQGVS---IGTIKT-KA---  618 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCC-CEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCCCcE---EEEEec-CC---
Confidence            3567788876543221111111 1112222  2456777777644        678888876541   222211 10   


Q ss_pred             cccceeEEEE---CCEEEEEeeeCCeEEEEECCCCc--eeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903          242 SREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD  316 (387)
Q Consensus       242 ~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~  316 (387)
                         ....+.+   +|.+++.|+.+..+.+||..+..  ...+..   ..-.-..+...++..++.++.++.|.+||..+.
T Consensus       619 ---~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        619 ---NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             ---CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence               0112222   46777777777899999987542  222211   000112233345666667777889999998643


Q ss_pred             ----ceEEccccccccC--ceeEEEeCCeEEEEecCCceEEEEEec
Q 044903          317 ----DWKEVVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       317 ----~W~~v~~~~~~~~--~~~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                          .|..+........  .......++.+++.|+.++.+.+||..
T Consensus       693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence                2433332222222  122334467777887778899999876

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.73  E-value=1.2  Score=38.62  Aligned_cols=211  Identities=9%  Similarity=0.027  Sum_probs=115.2

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCC--EEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRG--AVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.-++.+|.+       ..+.+||..|.+--+-=  ...-+...++..+.  .+.+-|+.+.        ++.+||..
T Consensus        69 ~Dnskf~s~GgD-------k~v~vwDV~TGkv~Rr~--rgH~aqVNtV~fNeesSVv~SgsfD~--------s~r~wDCR  131 (307)
T KOG0316|consen   69 SDNSKFASCGGD-------KAVQVWDVNTGKVDRRF--RGHLAQVNTVRFNEESSVVASGSFDS--------SVRLWDCR  131 (307)
T ss_pred             ccccccccCCCC-------ceEEEEEcccCeeeeec--ccccceeeEEEecCcceEEEeccccc--------eeEEEEcc
Confidence            455555555432       46789999998643310  00001112233332  4555555544        78889988


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEE
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGI  301 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~  301 (387)
                      ++.    -+.+.-+.+.   .+...++.+.+...+.|..+..+-.||...++-..--  +..+.  .++. ..++..-+.
T Consensus       132 S~s----~ePiQildea---~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pi--t~vs~s~d~nc~La  200 (307)
T KOG0316|consen  132 SRS----FEPIQILDEA---KDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPI--TSVSFSKDGNCSLA  200 (307)
T ss_pred             cCC----CCccchhhhh---cCceeEEEecccEEEeeccCCcEEEEEeecceeehhh--cCCcc--eeEEecCCCCEEEE
Confidence            888    6666544433   3557778888888777776678899998766433211  11111  1222 234555666


Q ss_pred             eCCCCeEEEEeCCCCceEEc-cccccccCceeEEEeCCeEEEEec-CCceEEEEEecCCCCCceeEEcCCCCceeeEEEe
Q 044903          302 DENSCTLSKYDEVMDDWKEV-VKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHI  379 (387)
Q Consensus       302 g~~~~~v~~yd~~~~~W~~v-~~~~~~~~~~~~~~~~~~l~v~gg-~~~~i~v~d~~~~~~~~~W~~~~~~~~~~~~~~~  379 (387)
                      +..++.+...|-++.+--.. ..........-+......-.|++| .++.+++||..+.  -..=..+.+.+..+..+.-
T Consensus       201 ~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--~~~sk~~~~~~v~v~dl~~  278 (307)
T KOG0316|consen  201 SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--TQISKLSVVSTVIVTDLSC  278 (307)
T ss_pred             eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc--eeeeeeccCCceeEEeeec
Confidence            65667788888777632111 111111112223333334445544 5788999999854  1111236667766667766


Q ss_pred             cccccC
Q 044903          380 LPRMSK  385 (387)
Q Consensus       380 ~~~~~~  385 (387)
                      -|+|..
T Consensus       279 hp~~~~  284 (307)
T KOG0316|consen  279 HPTMDD  284 (307)
T ss_pred             ccCccc
Confidence            677754

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.17  E-value=0.44  Score=43.26  Aligned_cols=107  Identities=12%  Similarity=0.232  Sum_probs=65.3

Q ss_pred             CCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCC----
Q 044903          162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL----  236 (387)
Q Consensus       162 ~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~----  236 (387)
                      ....+..||..+.+|..+..--..- -.+... -++++|+.|-...  .......+..||..+.+    |..++.-    
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~--~~~~~~~la~yd~~~~~----w~~~~~~~s~~   86 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTL--NGTNSSNLATYDFKNQT----WSSLGGGSSNS   86 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEE--CCCCceeEEEEecCCCe----eeecCCccccc
Confidence            4567889999999999976432111 112222 3678888886644  22245678999999999    9988762    


Q ss_pred             -CCCcccccceeEEEECC-EEEEEeeeC---CeEEEEECCCCceeeccc
Q 044903          237 -KDGRFSREAIDAVGWKG-KLCLVNVKG---AEGAVYDVVANTWDDMRE  280 (387)
Q Consensus       237 -~~~~~~~~~~~~v~~~g-~lyv~gg~~---~~i~~yD~~~~~W~~~~~  280 (387)
                       |.+..   .......++ .+++.|...   ..+..||  -.+|..+..
T Consensus        87 ipgpv~---a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   87 IPGPVT---ALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             CCCcEE---EEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence             22210   011111233 466655433   5577774  568998875

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.13  E-value=0.005  Score=55.16  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=37.2

Q ss_pred             CCCCChHHHHHHHhhhcC--------hhhHHHhhHhhhhhccCCCCCCcceE
Q 044903           42 LLPGLPDHIAHLCLSHVH--------PSILHNVCHSWRRLIYSPSFPPFLSL   85 (387)
Q Consensus        42 ~~~~LP~dl~~~iL~rLP--------~~~~r~Vck~W~~li~s~~f~~~~~l   85 (387)
                      .|..|||||+.+||.++=        +.++.+|||.|...+.+|+|++..|+
T Consensus       106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            356899999999997653        77889999999999999999765444

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=95.07  E-value=0.9  Score=40.53  Aligned_cols=79  Identities=13%  Similarity=0.009  Sum_probs=48.0

Q ss_pred             CCCCCCCceeeeEEeeC--C--EEEEEecCCCCC---------C--CCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          179 GPELVTPRRWCAAGYSR--G--AVYVASGIGSQF---------S--SDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       179 l~~~~~~r~~~~~~~~~--~--~iyv~GG~~~~~---------~--~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      +.+.|.+|..|+..++.  |  ...++||....-         +  .+-...|...|++-+.    .+. -.+|+-.-+.
T Consensus        81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC----~ta-h~lpEl~dG~  155 (337)
T PF03089_consen   81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGC----CTA-HTLPELQDGQ  155 (337)
T ss_pred             cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccc----ccc-ccchhhcCCe
Confidence            57889999887776662  2  356677753210         0  0123355666777664    332 2244333334


Q ss_pred             cceeEEEECCEEEEEeeeC
Q 044903          244 EAIDAVGWKGKLCLVNVKG  262 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg~~  262 (387)
                      ..|.+.+-++.+|++||+.
T Consensus       156 SFHvslar~D~VYilGGHs  174 (337)
T PF03089_consen  156 SFHVSLARNDCVYILGGHS  174 (337)
T ss_pred             EEEEEEecCceEEEEccEE
Confidence            4588888899999999964

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.04  E-value=3.6  Score=39.88  Aligned_cols=176  Identities=10%  Similarity=0.006  Sum_probs=96.0

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|..+++-+.+...+..-.......-+.+|++....+.      ...++++|..+++    .+.+..-+...   
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~---  289 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQ----LSRVTNHPAID---  289 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCC----eEEcccCCCCc---
Confidence            4689999999988887654421111112222345654432211      2478899999988    87776432111   


Q ss_pred             cceeEEEECC-EEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903          244 EAIDAVGWKG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W  318 (387)
                       ......-+| +|++.....  ..++.+|..+++++.+..... ....+.....++.|++.....+  .|+.+|+++...
T Consensus       290 -~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~-~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        290 -TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN-YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             -CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence             111222244 455553322  578888988888876642111 1111222234556666654333  589999999888


Q ss_pred             EEccccccccCceeEEEeCCeEEEEecC---CceEEEEEec
Q 044903          319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVK  356 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~---~~~i~v~d~~  356 (387)
                      +.+.......  .....-+|+.+++...   ...++++|..
T Consensus       368 ~~lt~~~~~~--~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        368 RILTDTSLDE--SPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             EEccCCCCCC--CceECCCCCEEEEEEecCCceEEEEEECC
Confidence            7765432211  1234456666665442   2457777776

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=95.04  E-value=0.22  Score=39.50  Aligned_cols=71  Identities=13%  Similarity=0.079  Sum_probs=51.6

Q ss_pred             EeCCeEEEEeCC----CCeEEEEeCCCCceEEcccc--c-cccCceeEEEeCCeEEEEecCC------ceEEEEEecCCC
Q 044903          293 MDEEVLYGIDEN----SCTLSKYDEVMDDWKEVVKS--D-LLKGARHAAAGGGRVCAVCENG------GGIVVVDVKAAA  359 (387)
Q Consensus       293 ~~~g~ly~~g~~----~~~v~~yd~~~~~W~~v~~~--~-~~~~~~~~~~~~~~l~v~gg~~------~~i~v~d~~~~~  359 (387)
                      ..+|.||.+...    ...|.+||.++++|+.+..+  + .......++.++|+|.++....      -.+++++...+ 
T Consensus         3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k-   81 (129)
T PF08268_consen    3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK-   81 (129)
T ss_pred             EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc-
Confidence            457889988743    34699999999999988764  2 2334578999999999986542      46788864433 


Q ss_pred             CCceeEE
Q 044903          360 APTIFVV  366 (387)
Q Consensus       360 ~~~~W~~  366 (387)
                        ++|..
T Consensus        82 --~~Wsk   86 (129)
T PF08268_consen   82 --QEWSK   86 (129)
T ss_pred             --ceEEE
Confidence              57884

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.04  E-value=4.3  Score=40.66  Aligned_cols=196  Identities=16%  Similarity=0.253  Sum_probs=107.7

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCCc--------eeeeEEeeCCEEEEEecCCCCCCCC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR--------RWCAAGYSRGAVYVASGIGSQFSSD  211 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~  211 (387)
                      .++.++.||+....        ..++.+|..|.  .|+.-...+...        .....++.+++||+...        
T Consensus        65 Pvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------  128 (527)
T TIGR03075        65 PLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------  128 (527)
T ss_pred             CEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------
Confidence            34568888886542        35788888876  487643322110        11223556788887432        


Q ss_pred             CCceEEEEeCCCCccccCeEEcC-CCCCCcccccceeEEEECCEEEEEeee-----CCeEEEEECCCC--ceeec--ccc
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDDM--REG  281 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~~--~~~  281 (387)
                       ...+..+|..|++..  |+.-. ..... +. .....++.++++|+-...     ...+.+||.+++  .|+.-  +..
T Consensus       129 -dg~l~ALDa~TGk~~--W~~~~~~~~~~-~~-~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~  203 (527)
T TIGR03075       129 -DARLVALDAKTGKVV--WSKKNGDYKAG-YT-ITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGD  203 (527)
T ss_pred             -CCEEEEEECCCCCEE--eeccccccccc-cc-ccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCC
Confidence             126789999999866  87543 11111 11 113456678988875321     257899999876  57633  211


Q ss_pred             cc------------C---CCC-----------CcEEEEe--CCeEEEEeCC---------------CCeEEEEeCCCC--
Q 044903          282 MV------------R---GWR-----------GPVAAMD--EEVLYGIDEN---------------SCTLSKYDEVMD--  316 (387)
Q Consensus       282 ~~------------~---~~~-----------~~~~~~~--~g~ly~~g~~---------------~~~v~~yd~~~~--  316 (387)
                      ..            .   .|.           ....++.  .+.||+-.++               ...|...|++|.  
T Consensus       204 ~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~  283 (527)
T TIGR03075       204 MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI  283 (527)
T ss_pred             cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE
Confidence            00            0   010           0011222  3456765432               125888888876  


Q ss_pred             ceEEcccccc---cc--CceeEEE--eCCe---EEEEecCCceEEEEEecCC
Q 044903          317 DWKEVVKSDL---LK--GARHAAA--GGGR---VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       317 ~W~~v~~~~~---~~--~~~~~~~--~~~~---l~v~gg~~~~i~v~d~~~~  358 (387)
                      +|.-......   ..  ....++.  .+|+   +++.+...+.++++|..++
T Consensus       284 ~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       284 KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG  335 (527)
T ss_pred             EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence            4654332111   11  1223443  3665   8888778899999999865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PTZ00420 coronin; Provisional

Probab=94.95  E-value=4.7  Score=40.63  Aligned_cols=142  Identities=13%  Similarity=0.137  Sum_probs=70.5

Q ss_pred             EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEE--EECCEEEEEeeeCCeEEEEECCCCc
Q 044903          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAV--GWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v--~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      .+++.||.+.        .+.+||..+.+..  . .+. .+..      ..++  ..+|.+.+.++.+..+.+||+.+.+
T Consensus       139 ~iLaSgS~Dg--------tIrIWDl~tg~~~--~-~i~-~~~~------V~SlswspdG~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        139 YIMCSSGFDS--------FVNIWDIENEKRA--F-QIN-MPKK------LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             eEEEEEeCCC--------eEEEEECCCCcEE--E-EEe-cCCc------EEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence            3455555543        6788998877521  1 111 1111      2222  2367877777766789999998753


Q ss_pred             ee-eccccccCCCCCcEEE-E----eCCeEEEEeCCC----CeEEEEeCCC-CceEEccccccccCce-eE-EEeCCeEE
Q 044903          275 WD-DMREGMVRGWRGPVAA-M----DEEVLYGIDENS----CTLSKYDEVM-DDWKEVVKSDLLKGAR-HA-AAGGGRVC  341 (387)
Q Consensus       275 W~-~~~~~~~~~~~~~~~~-~----~~g~ly~~g~~~----~~v~~yd~~~-~~W~~v~~~~~~~~~~-~~-~~~~~~l~  341 (387)
                      =. ++..  ..+......+ .    .++...+.++.+    +.|.+||..+ ..-..........+.. .. ....|.+|
T Consensus       201 ~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        201 IASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             EEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence            21 1111  1111001111 1    233333333333    3699999874 2211111111111110 11 12247888


Q ss_pred             EEecCCceEEEEEecCC
Q 044903          342 AVCENGGGIVVVDVKAA  358 (387)
Q Consensus       342 v~gg~~~~i~v~d~~~~  358 (387)
                      +.|.++..|.+||+..+
T Consensus       279 lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEECCCeEEEEEccCC
Confidence            88888899999998743

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=94.85  E-value=1.4  Score=39.26  Aligned_cols=175  Identities=11%  Similarity=0.172  Sum_probs=93.3

Q ss_pred             ccEEEeCCCCceeeCCCCCC--Cceee---eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          165 RPLIFDPICRTWTFGPELVT--PRRWC---AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~--~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      .+.+++...+.|...-+...  ...++   .+...++...+.++.+.        .+-.+|..+.++.  =+-+.     
T Consensus        39 ~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~--------~lrlWDl~~g~~t--~~f~G-----  103 (315)
T KOG0279|consen   39 TIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG--------TLRLWDLATGEST--RRFVG-----  103 (315)
T ss_pred             EEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc--------eEEEEEecCCcEE--EEEEe-----
Confidence            45666666666655332221  11111   12223556666666543        5667777776511  00000     


Q ss_pred             cccccc-eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-C--CeEEEEeCCCCeEEEEeCCC
Q 044903          240 RFSREA-IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-E--EVLYGIDENSCTLSKYDEVM  315 (387)
Q Consensus       240 ~~~~~~-~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~--g~ly~~g~~~~~v~~yd~~~  315 (387)
                       ...+. ..++.-|++-.+-|..+..+..||...+.=-++.......|- .++... +  +-+.+-++.++.+.+||..+
T Consensus       104 -H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV-scvrfsP~~~~p~Ivs~s~DktvKvWnl~~  181 (315)
T KOG0279|consen  104 -HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV-SCVRFSPNESNPIIVSASWDKTVKVWNLRN  181 (315)
T ss_pred             -cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE-EEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence             00010 222334566666666667788887766544444333323331 112222 2  22344445788899999987


Q ss_pred             CceEEccccccccC--ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          316 DDWKEVVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       316 ~~W~~v~~~~~~~~--~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      -+-..  ..+...+  ....+..+|.++.-||.++.++.+|+.++
T Consensus       182 ~~l~~--~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~  224 (315)
T KOG0279|consen  182 CQLRT--TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG  224 (315)
T ss_pred             cchhh--ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence            63322  1112222  35566789999999999999999999865

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.79  E-value=4.7  Score=39.95  Aligned_cols=166  Identities=19%  Similarity=0.158  Sum_probs=83.4

Q ss_pred             CCEEEEEecCCCCC---------CCCCCceEEEEeCCCCccccCeEEcCCCCCC-----cccccceeEEEECCE---EEE
Q 044903          195 RGAVYVASGIGSQF---------SSDVAKSVEKWDLMNGEKNSRWEKTGELKDG-----RFSREAIDAVGWKGK---LCL  257 (387)
Q Consensus       195 ~~~iyv~GG~~~~~---------~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~-----~~~~~~~~~v~~~g~---lyv  257 (387)
                      ++.+|+-.+.+...         .......+..+|..+.+..  |+.-...+..     ............+|.   +.+
T Consensus       228 ~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~--W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~  305 (488)
T cd00216         228 TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK--WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIV  305 (488)
T ss_pred             CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE--EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence            56788765432110         1123347899999999866  9854322111     000000001113343   223


Q ss_pred             EeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEe-----------------CCCCeEEEEeCCCC--
Q 044903          258 VNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGID-----------------ENSCTLSKYDEVMD--  316 (387)
Q Consensus       258 ~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g-----------------~~~~~v~~yd~~~~--  316 (387)
                      ++.....++++|.++.  .|+.-.....       ++...+.+|+-.                 ...+.+..+|.++.  
T Consensus       306 ~g~~~G~l~ald~~tG~~~W~~~~~~~~-------~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~  378 (488)
T cd00216         306 HAPKNGFFYVLDRTTGKLISARPEVEQP-------MAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV  378 (488)
T ss_pred             EECCCceEEEEECCCCcEeeEeEeeccc-------cccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence            3333457899999877  5874321000       111124555522                 12356788887654  


Q ss_pred             ceEEccccc-------cccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCc
Q 044903          317 DWKEVVKSD-------LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGF  372 (387)
Q Consensus       317 ~W~~v~~~~-------~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~  372 (387)
                      .|+.-...-       .......++..++.||+- ..++.++.+|.+++  ...|+..++.+.
T Consensus       379 ~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g-~~dG~l~ald~~tG--~~lW~~~~~~~~  438 (488)
T cd00216         379 VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG-AADGYFRAFDATTG--KELWKFRTPSGI  438 (488)
T ss_pred             eeEeeCCccccccccCCcccCcceEecCCeEEEE-CCCCeEEEEECCCC--ceeeEEECCCCc
Confidence            576632200       001112234455555544 56788999998743  467998766554

The alignment model contains an 8-bladed beta-propeller.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.74  E-value=4.4  Score=39.80  Aligned_cols=176  Identities=14%  Similarity=0.057  Sum_probs=95.1

Q ss_pred             CccEEEeCCCC-c-eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICR-T-WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~-~-W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+.+||...+ . =+.+..+.......+... .+++++.|+.+.        .+.++|..+.+    -...-.......
T Consensus       225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~--------tvriWd~~~~~----~~~~l~~hs~~i  291 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDG--------TVRIWDVRTGE----CVRKLKGHSDGI  291 (456)
T ss_pred             ceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCC--------cEEEEeccCCe----EEEeeeccCCce
Confidence            45677888433 2 233444444442222222 347888887755        78889988866    322221111110


Q ss_pred             cccceeEEEECCEEEEEeeeCCeEEEEECCCCcee---eccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCc
Q 044903          242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD---DMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDD  317 (387)
Q Consensus       242 ~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~---~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~  317 (387)
                         ...+..-+|.+++.+.....+.+||+.++.-.   .+....... .-..+... +++..+.+..++.+..||..+..
T Consensus       292 ---s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~  367 (456)
T KOG0266|consen  292 ---SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK  367 (456)
T ss_pred             ---EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence               12222335677777766688999999888743   222211111 11233332 34433444456689999987553


Q ss_pred             ----eEEccccccccCceeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903          318 ----WKEVVKSDLLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       318 ----W~~v~~~~~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                          |+.....  .+..+..+ ..+++..+.|..+..|.++|+.+.
T Consensus       368 ~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  368 SVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             ceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence                2222221  12222223 447788888788899999999954

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.74  E-value=4.6  Score=39.54  Aligned_cols=176  Identities=7%  Similarity=-0.001  Sum_probs=94.0

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|..+++-+.+...+..........-+.+|++....+.      ...++++|..+++    .+.+..-....   
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~----~~~lt~~~~~~---  308 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKA----LTRITRHRAID---  308 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCC----eEECccCCCCc---
Confidence            5689999998887777655422222222223445665543221      2478889999988    87776422111   


Q ss_pred             cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W  318 (387)
                       ......-+|+ |++.....  ..++.+|+.+++++.+...... ...+...-.++.|++.....+  .|+++|+++...
T Consensus       309 -~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        309 -TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             -cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence             1112223554 54443322  5788889988888776421111 112233334456666654333  588899998887


Q ss_pred             EEccccccccCceeEEEeCCeEEEEec-CC--ceEEEEEec
Q 044903          319 KEVVKSDLLKGARHAAAGGGRVCAVCE-NG--GGIVVVDVK  356 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg-~~--~~i~v~d~~  356 (387)
                      +.+....... .. ...-+|+.+++.. .+  ..++++|..
T Consensus       387 ~~lt~~~~d~-~p-s~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        387 QVLTSTRLDE-SP-SVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             EEccCCCCCC-Cc-eECCCCCEEEEEEecCCceEEEEEECC
Confidence            7665322111 12 2334454444432 22  347777875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=94.70  E-value=5.4  Score=42.23  Aligned_cols=101  Identities=4%  Similarity=-0.050  Sum_probs=58.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCce-eeccccccCCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAM--DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~--~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      ++.+++.|+.+..+.+||..+..- ..+..  ..  ...++..  .++.+++.|+.++.|.+||..+..- .+.......
T Consensus       587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~--~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~  661 (793)
T PLN00181        587 DPTLLASGSDDGSVKLWSINQGVSIGTIKT--KA--NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHS  661 (793)
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEEEEEec--CC--CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCC
Confidence            466777777778899999876432 22211  00  1112222  2467788888889999999875421 111111122


Q ss_pred             Cc-eeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          329 GA-RHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       329 ~~-~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .. ..+...++..++.++.++.+-+||+..
T Consensus       662 ~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        662 KTVSYVRFVDSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCEEEEEEeCCCEEEEEECCCEEEEEeCCC
Confidence            22 223234667777777788899998863

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=94.59  E-value=3.3  Score=37.21  Aligned_cols=159  Identities=11%  Similarity=0.067  Sum_probs=80.3

Q ss_pred             CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc-cceeEE-EEC-CEEEE
Q 044903          181 ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR-EAIDAV-GWK-GKLCL  257 (387)
Q Consensus       181 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~-~~~~~v-~~~-g~lyv  257 (387)
                      |||.......+-.-.++....||.++        ..-+|+..+..    =+...++....... ...+.+ .++ +.|. 
T Consensus        94 pl~s~WVMtCA~sPSg~~VAcGGLdN--------~Csiy~ls~~d----~~g~~~v~r~l~gHtgylScC~f~dD~~il-  160 (343)
T KOG0286|consen   94 PLPSSWVMTCAYSPSGNFVACGGLDN--------KCSIYPLSTRD----AEGNVRVSRELAGHTGYLSCCRFLDDNHIL-  160 (343)
T ss_pred             ecCceeEEEEEECCCCCeEEecCcCc--------eeEEEeccccc----ccccceeeeeecCccceeEEEEEcCCCceE-
Confidence            34443333333333567777888765        56788888653    11111111111110 111122 223 3332 


Q ss_pred             EeeeCCeEEEEECCCCceeeccccccCCCCCcEEE----EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccC--ce
Q 044903          258 VNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG--AR  331 (387)
Q Consensus       258 ~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~----~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~--~~  331 (387)
                      .+..+.....+|.++.+=...=.    +..+..++    -.+++.|+-|+.+...++||....  ..+...+.+..  +.
T Consensus       161 T~SGD~TCalWDie~g~~~~~f~----GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINs  234 (343)
T KOG0286|consen  161 TGSGDMTCALWDIETGQQTQVFH----GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINS  234 (343)
T ss_pred             ecCCCceEEEEEcccceEEEEec----CCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccccccce
Confidence            22222567777887765433211    11111111    226788999988889999998766  23333333332  23


Q ss_pred             eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          332 HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       332 ~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ..+--+|.-++.|..+...-+||+.+.
T Consensus       235 v~ffP~G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  235 VRFFPSGDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             EEEccCCCeeeecCCCceeEEEeecCC
Confidence            334446777777666666777777743

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=94.57  E-value=5.6  Score=39.80  Aligned_cols=170  Identities=12%  Similarity=0.111  Sum_probs=94.2

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..+.++|..+++--.+-.-  .-....++.+++.+.|.|..+.        .+-+||+.+.+    --..-.-...+   
T Consensus       311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~--------~v~VW~~~~~~----cl~sl~gH~~~---  373 (537)
T KOG0274|consen  311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDG--------TVKVWDPRTGK----CLKSLSGHTGR---  373 (537)
T ss_pred             ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCc--------eEEEEEhhhce----eeeeecCCcce---
Confidence            3456666665443332110  0011223445666777766543        78888888776    32221111111   


Q ss_pred             cceeEEEECC-EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE----EeCCeEEEEeCCCCeEEEEeCCCCce
Q 044903          244 EAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~----~~~g~ly~~g~~~~~v~~yd~~~~~W  318 (387)
                        ..+..+++ ..++-|+.+..+.+.|+++..    .  ......++..+    ...++.++-+..++.|.+||.++..=
T Consensus       374 --V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~----~--c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~  445 (537)
T KOG0274|consen  374 --VYSLIVDSENRLLSGSLDTTIKVWDLRTKR----K--CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC  445 (537)
T ss_pred             --EEEEEecCcceEEeeeeccceEeecCCchh----h--hhhhhcCCcccccccccccceeEeccccccEEEeecccCce
Confidence              23446677 566666666788888888775    1  11112222222    23355666666788999999988755


Q ss_pred             EEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCC
Q 044903          319 KEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAA  359 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~  359 (387)
                      .++..-+ ......+...+...++..+..+.+.++|+..+.
T Consensus       446 ~~~~~~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  446 LRTLEGR-HVGGVSALALGKEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             eeeeccC-CcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence            5544333 333333444444666666778888888888663

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.28  E-value=4.3  Score=37.31  Aligned_cols=175  Identities=14%  Similarity=0.106  Sum_probs=73.6

Q ss_pred             CCCceeeCCCCCCCceeeeEEeeC-CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE
Q 044903          172 ICRTWTFGPELVTPRRWCAAGYSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG  250 (387)
Q Consensus       172 ~t~~W~~l~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~  250 (387)
                      ..+.|+.+. +|...........+ +.-|++|..+.           +|-....-.  +|.....-..............
T Consensus         4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g~-----------il~T~DGG~--tW~~~~~~~~~~~~~~l~~I~f   69 (302)
T PF14870_consen    4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYGT-----------ILKTTDGGK--TWQPVSLDLDNPFDYHLNSISF   69 (302)
T ss_dssp             SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTTE-----------EEEESSTTS--S-EE-----S-----EEEEEEE
T ss_pred             cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCCE-----------EEEECCCCc--cccccccCCCccceeeEEEEEe
Confidence            356788875 33333444444444 56788775432           111111111  2988762221111111122334


Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeecccccc-CCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccC
Q 044903          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMV-RGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG  329 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~-~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~  329 (387)
                      .++..|++|..+ .+..-.=.-.+|+.++-..+ .+......+..++.+.+.+ ..+.|++=.-....|+.+.......-
T Consensus        70 ~~~~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~~~gs~  147 (302)
T PF14870_consen   70 DGNEGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSETSGSI  147 (302)
T ss_dssp             ETTEEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S----E
T ss_pred             cCCceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccCCccee
Confidence            577888886543 22222223559999863211 1211122334456666665 46778887777889998764322111


Q ss_pred             ceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          330 ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       330 ~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      ......-+|++++++..|.-...+|+-..    .|+.
T Consensus       148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~----~w~~  180 (302)
T PF14870_consen  148 NDITRSSDGRYVAVSSRGNFYSSWDPGQT----TWQP  180 (302)
T ss_dssp             EEEEE-TTS-EEEEETTSSEEEEE-TT-S----S-EE
T ss_pred             EeEEECCCCcEEEEECcccEEEEecCCCc----cceE
Confidence            12223456777777655655566676643    6876

>PRK13684 Ycf48-like protein; Provisional

Probab=94.25  E-value=4.8  Score=37.71  Aligned_cols=170  Identities=11%  Similarity=0.052  Sum_probs=86.1

Q ss_pred             cEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEE-EEeCCCCccccCeEEcCCCCCCccccc
Q 044903          166 PLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVE-KWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       166 ~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~-vyd~~t~~~~~~W~~~~~~~~~~~~~~  244 (387)
                      +++=+-.-++|+++...... ..+......+..+++.|...        .+. ..|....+    |..+.......    
T Consensus       154 i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~t----W~~~~~~~~~~----  216 (334)
T PRK13684        154 IYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTA----WTPHQRNSSRR----  216 (334)
T ss_pred             EEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCe----EEEeeCCCccc----
Confidence            34434445689987543322 23333444444444444322        111 12333445    98876422211    


Q ss_pred             ceeEE-EECCEEEEEeeeCCeEEEEE-CC-CCceeecccccc-CCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceE
Q 044903          245 AIDAV-GWKGKLCLVNVKGAEGAVYD-VV-ANTWDDMREGMV-RGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWK  319 (387)
Q Consensus       245 ~~~~v-~~~g~lyv~gg~~~~i~~yD-~~-~~~W~~~~~~~~-~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~  319 (387)
                      ....+ .-++.++++|..+  ...+. .. -.+|+.+..... ....-..++.. ++.+|+.+. .|.++.-.....+|+
T Consensus       217 l~~i~~~~~g~~~~vg~~G--~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G~tW~  293 (334)
T PRK13684        217 LQSMGFQPDGNLWMLARGG--QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGGKTWE  293 (334)
T ss_pred             ceeeeEcCCCCEEEEecCC--EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCCCCCe
Confidence            12222 2367888886544  23342 22 348997643211 11212223332 567887764 566666566678999


Q ss_pred             Ecccccc-ccCceeEE-EeCCeEEEEecCCceEEEEEec
Q 044903          320 EVVKSDL-LKGARHAA-AGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       320 ~v~~~~~-~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      .+..... ....+.++ ..+++++++ |..+.|..++..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~~  331 (334)
T PRK13684        294 KDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVGS  331 (334)
T ss_pred             ECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecCC
Confidence            9864222 22333444 446777776 666777777765

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=94.11  E-value=2.5  Score=38.68  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=59.2

Q ss_pred             EEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC--------------------Cce
Q 044903          290 VAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN--------------------GGG  349 (387)
Q Consensus       290 ~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~--------------------~~~  349 (387)
                      +.-.++|+||+.+...+++..+|+++.+.+.+...|.....  +.-+ |.+.++|-.                    ..+
T Consensus       207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rG--L~f~-G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG  283 (335)
T TIGR03032       207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRG--LAFA-GDFAFVGLSKLRESRVFGGLPIEERLDALGCG  283 (335)
T ss_pred             CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcc--ccee-CCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence            44567899999998889999999999999998776653332  2233 667777631                    147


Q ss_pred             EEEEEecCCCCCceeEEcCCCCceeeEEEeccc
Q 044903          350 IVVVDVKAAAAPTIFVVDTPLGFEALSVHILPR  382 (387)
Q Consensus       350 i~v~d~~~~~~~~~W~~~~~~~~~~~~~~~~~~  382 (387)
                      ++|+|..++.....-++.-.-. |+.-|.++|-
T Consensus       284 v~vidl~tG~vv~~l~feg~v~-EifdV~vLPg  315 (335)
T TIGR03032       284 VAVIDLNSGDVVHWLRFEGVIE-EIYDVAVLPG  315 (335)
T ss_pred             EEEEECCCCCEEEEEEeCCcee-EEEEEEEecC
Confidence            8888888663223122232222 6778888883

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=94.01  E-value=5  Score=37.03  Aligned_cols=144  Identities=14%  Similarity=0.161  Sum_probs=76.7

Q ss_pred             CceEEEEeCCCCccccCeEEcCCCCC-CcccccceeEEEECCE-EEEEeeeCCeE--EEEECCCCceeeccc--cccCCC
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKGK-LCLVNVKGAEG--AVYDVVANTWDDMRE--GMVRGW  286 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~~~~~-~~~~~~~~~~v~~~g~-lyv~gg~~~~i--~~yD~~~~~W~~~~~--~~~~~~  286 (387)
                      .+.+.+|+...+.    -....+... +-.+.+ |-+.--+++ .|+++.-...+  +.||...++.++++.  .+|..+
T Consensus       166 ~Dri~~y~~~dg~----L~~~~~~~v~~G~GPR-Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF  240 (346)
T COG2706         166 TDRIFLYDLDDGK----LTPADPAEVKPGAGPR-HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF  240 (346)
T ss_pred             CceEEEEEcccCc----cccccccccCCCCCcc-eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence            3478888888666    333321111 111111 333333555 58887766554  456666678877762  234443


Q ss_pred             CC---cEEE---EeCCeEEEEeCCCCeEEEE--eCCCCceEEcccccc---ccCceeEEEeCCeEEEEecCCceEEEEEe
Q 044903          287 RG---PVAA---MDEEVLYGIDENSCTLSKY--DEVMDDWKEVVKSDL---LKGARHAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       287 ~~---~~~~---~~~g~ly~~g~~~~~v~~y--d~~~~~W~~v~~~~~---~~~~~~~~~~~~~l~v~gg~~~~i~v~d~  355 (387)
                      .+   .+++   ..|..||+..-....|.+|  |+.+.+-.-+..-+.   .-+.+.+...++.|++.+..+.++.||..
T Consensus       241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            31   1211   3345677764323456666  666665444432221   12245555666677777667788888877


Q ss_pred             cCCCCCc
Q 044903          356 KAAAAPT  362 (387)
Q Consensus       356 ~~~~~~~  362 (387)
                      +. ..|+
T Consensus       321 d~-~TG~  326 (346)
T COG2706         321 DK-ETGR  326 (346)
T ss_pred             cC-CCce
Confidence            73 3444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=93.98  E-value=6.5  Score=38.25  Aligned_cols=178  Identities=11%  Similarity=0.049  Sum_probs=92.2

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|+.+++.+.+...+..........-+.+|++....+.      ...++++|..+++    -+.+..-+..    
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~Lt~~~~~----  291 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGT----TTRLTDSPAI----  291 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCc----eEEccCCCCc----
Confidence            5789999999988887655432222222223445555433221      2468888998887    6666543211    


Q ss_pred             cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 044903          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--~~v~~yd~~~~~W  318 (387)
                      .......-+|+ |++.....  ..++++|......+.+... ......+...-.|+.|++.....  ..++++|+++...
T Consensus       292 ~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~  370 (435)
T PRK05137        292 DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE  370 (435)
T ss_pred             cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence            11122223454 44332222  5788889877766665431 11111222223344565554322  3689999877765


Q ss_pred             EEccccccccCceeEEEeCCeEEEE-ecC-C----ceEEEEEecCC
Q 044903          319 KEVVKSDLLKGARHAAAGGGRVCAV-CEN-G----GGIVVVDVKAA  358 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~l~v~-gg~-~----~~i~v~d~~~~  358 (387)
                      +.+..... .... ...-+|+.+++ ... +    ..++++|....
T Consensus       371 ~~lt~~~~-~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        371 RILTSGFL-VEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EeccCCCC-CCCC-eECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            55443211 1112 23335554444 321 1    36888888743

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=93.95  E-value=4.1  Score=35.82  Aligned_cols=132  Identities=10%  Similarity=0.079  Sum_probs=74.4

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCccc--cccee--EEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcE
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFS--REAID--AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~--~~~~~--~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      .+-.||..++.+         .|...+.  ..+..  +..++|+....|+.+..+.+.|+..-.-...-. .+.  .-.+
T Consensus        62 hvRlyD~~S~np---------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~s--pVn~  129 (311)
T KOG0315|consen   62 HVRLYDLNSNNP---------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNS--PVNT  129 (311)
T ss_pred             eeEEEEccCCCC---------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCC--Ccce
Confidence            678888888771         1111110  01122  334688877777777788888887632222211 111  1223


Q ss_pred             EEEeCCe-EEEEeCCCCeEEEEeCCCCceEEccccccccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          291 AAMDEEV-LYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~g~-ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++..-++ -.+.+..+|.|++||+.++.-.....+..... .-..+..+|++++..-+.++.+|++.-+.
T Consensus       130 vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~  199 (311)
T KOG0315|consen  130 VVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH  199 (311)
T ss_pred             EEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence            4443332 22333457899999999997766443322222 22344567777776556788999988753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.73  E-value=1.9  Score=43.13  Aligned_cols=119  Identities=15%  Similarity=0.225  Sum_probs=71.3

Q ss_pred             eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc---c--cceeEEEECCEEEEEeeeCCe
Q 044903          190 AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS---R--EAIDAVGWKGKLCLVNVKGAE  264 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~---~--~~~~~v~~~g~lyv~gg~~~~  264 (387)
                      +.++.++.||+....         ..+..+|..|++..  |+.-...+.....   .  .....++.++++|+... ...
T Consensus        64 tPvv~~g~vyv~s~~---------g~v~AlDa~TGk~l--W~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg~  131 (527)
T TIGR03075        64 QPLVVDGVMYVTTSY---------SRVYALDAKTGKEL--WKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DAR  131 (527)
T ss_pred             CCEEECCEEEEECCC---------CcEEEEECCCCcee--eEecCCCCcccccccccccccccceEECCEEEEEcC-CCE
Confidence            345678999986432         25788999988866  8865543321110   0  01123567888887543 347


Q ss_pred             EEEEECCCC--ceeeccccccCCC-CCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCC--ceEE
Q 044903          265 GAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDEEVLYGIDE-----NSCTLSKYDEVMD--DWKE  320 (387)
Q Consensus       265 i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~g~ly~~g~-----~~~~v~~yd~~~~--~W~~  320 (387)
                      +.++|.++.  .|+.-......+. ...+.++.+++||+-..     .++.|..||.++.  .|+.
T Consensus       132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            999999876  6875432222111 11233456788877532     2467999998775  4764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.31  E-value=2.4  Score=39.24  Aligned_cols=218  Identities=19%  Similarity=0.179  Sum_probs=101.5

Q ss_pred             hHHHhhHhhhhhcc-CCCCCCcceEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccce
Q 044903           62 ILHNVCHSWRRLIY-SPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPV  140 (387)
Q Consensus        62 ~~r~Vck~W~~li~-s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~  140 (387)
                      |+-++-+++..-++ +..|     +|+.-      .++..++-+.|...++...--+.|.   +-..|     =.+..+|
T Consensus        90 R~~~~~~~~~~~ls~dgk~-----~~V~N------~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iy-----P~~~~~F  150 (342)
T PF06433_consen   90 RAQVVPYKNMFALSADGKF-----LYVQN------FTPATSVTVVDLAAKKVVGEIDTPG---CWLIY-----PSGNRGF  150 (342)
T ss_dssp             B--BS--GGGEEE-TTSSE-----EEEEE------ESSSEEEEEEETTTTEEEEEEEGTS---EEEEE-----EEETTEE
T ss_pred             hheecccccceEEccCCcE-----EEEEc------cCCCCeEEEEECCCCceeeeecCCC---EEEEE-----ecCCCce
Confidence            44444455554444 3333     55442      3478889999999987755444444   11111     0112346


Q ss_pred             eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd  220 (387)
                      ...+-+|.+..+.--... .......-+|++..+-.-.-+.....-........+|++|-+-=.+.     ...-...++
T Consensus       151 ~~lC~DGsl~~v~Ld~~G-k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~-----~~~~~~~~~  224 (342)
T PF06433_consen  151 SMLCGDGSLLTVTLDADG-KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD-----SAKFGKPWS  224 (342)
T ss_dssp             EEEETTSCEEEEEETSTS-SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS-----SEEEEEEEE
T ss_pred             EEEecCCceEEEEECCCC-CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC-----cccccCccc
Confidence            677777776666432111 11122234666655433222222111122334667888887532221     111222333


Q ss_pred             CCCCcc-ccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeC---------CeEEEEECCCCce-eeccccccCCCC
Q 044903          221 LMNGEK-NSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKG---------AEGAVYDVVANTW-DDMREGMVRGWR  287 (387)
Q Consensus       221 ~~t~~~-~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~---------~~i~~yD~~~~~W-~~~~~~~~~~~~  287 (387)
                      ..++.. .-.|+.-.          ....+.  -.++||++=..+         ..+++||+++.+= ..++-.-+    
T Consensus       225 ~~t~~e~~~~WrPGG----------~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~----  290 (342)
T PF06433_consen  225 LLTDAEKADGWRPGG----------WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP----  290 (342)
T ss_dssp             SS-HHHHHTTEEE-S----------SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE----
T ss_pred             ccCccccccCcCCcc----------eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc----
Confidence            322110 00166433          122222  257999873222         7899999998742 23321111    


Q ss_pred             CcEEEEeC-C--eEEEEeCCCCeEEEEeCCCCce
Q 044903          288 GPVAAMDE-E--VLYGIDENSCTLSKYDEVMDDW  318 (387)
Q Consensus       288 ~~~~~~~~-g--~ly~~g~~~~~v~~yd~~~~~W  318 (387)
                      ..++.+.. .  .||.+...++.+.+||..+.+-
T Consensus       291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             ESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            11333332 2  4777766678999999998743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=93.25  E-value=4.6  Score=35.40  Aligned_cols=124  Identities=13%  Similarity=0.105  Sum_probs=67.2

Q ss_pred             eEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE--eCCeEEEEeCC
Q 044903          230 WEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDEN  304 (387)
Q Consensus       230 W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~g~ly~~g~~  304 (387)
                      |+...+|..........-+..+   .|.++..||.+ .++..|+++++-+..-.+-..  .-++++.  .+++ .+-|++
T Consensus       101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G~i~r~~rGHtD--YvH~vv~R~~~~q-ilsG~E  176 (325)
T KOG0649|consen  101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDGRIQREYRGHTD--YVHSVVGRNANGQ-ILSGAE  176 (325)
T ss_pred             hhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCCEEEEEEcCCcc--eeeeeeecccCcc-eeecCC
Confidence            8877776542211111223333   47787777654 677778888887654322111  1233332  1233 345668


Q ss_pred             CCeEEEEeCCCCceEEcccc---c-ccc----CceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          305 SCTLSKYDEVMDDWKEVVKS---D-LLK----GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       305 ~~~v~~yd~~~~~W~~v~~~---~-~~~----~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +|.+.+||.++.+=..+..+   + ..+    ....+...+.. +++.|+|.+..++.....
T Consensus       177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp~lslwhLrss  237 (325)
T KOG0649|consen  177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGPKLSLWHLRSS  237 (325)
T ss_pred             CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCCceeEEeccCC
Confidence            99999999998876554322   1 122    12334444444 445566666666666544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.10  E-value=9.4  Score=37.37  Aligned_cols=135  Identities=15%  Similarity=0.037  Sum_probs=71.6

Q ss_pred             ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcE
Q 044903          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      ..++++|..+++    -..+...+....    .....-+|+ |++.....  ..++.+|+++++.+.+...... ...++
T Consensus       242 ~~L~~~dl~tg~----~~~lt~~~g~~~----~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~  312 (448)
T PRK04792        242 AEIFVQDIYTQV----REKVTSFPGING----APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAI-DTEPS  312 (448)
T ss_pred             cEEEEEECCCCC----eEEecCCCCCcC----CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCC-ccceE
Confidence            468889998887    666654432111    112223454 54443222  5688899998888776542111 11122


Q ss_pred             EEEeCCeEEEEeCCC--CeEEEEeCCCCceEEccccccccCceeEEEeCC-eEEEEecC--CceEEEEEecCC
Q 044903          291 AAMDEEVLYGIDENS--CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG-RVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~g~ly~~g~~~--~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~-~l~v~gg~--~~~i~v~d~~~~  358 (387)
                      ..-.+..|++.....  ..++.+|.++.+++.+......... ....-+| .|++.+..  ...++++|+.++
T Consensus       313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~-~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG-GSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC-eeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            222344565554333  3588999998888876422111111 1233344 45554332  246788887754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=93.08  E-value=8.7  Score=36.92  Aligned_cols=144  Identities=8%  Similarity=-0.080  Sum_probs=76.6

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|..+++-..+..........+...-+..|++......      ...++.+|..++.    ...+........  
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~----~~~l~~~~~~~~--  281 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQ----LTRLTNGPGIDT--  281 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC------CccEEEEECCCCC----EEECCCCCCCCC--
Confidence            5689999998877766544322222222222345665543221      2468889998887    776654321110  


Q ss_pred             cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC---CeEEEEeCCCCc
Q 044903          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS---CTLSKYDEVMDD  317 (387)
Q Consensus       244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~---~~v~~yd~~~~~  317 (387)
                        .....-+|+ |++.....  ..++.+|..+..++.+...... ...+. ...+|+.+++....   ..|+.||+++..
T Consensus       282 --~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~-~~~~~-~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       282 --EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY-NASPS-WSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             --CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC-ccCeE-ECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence              111122554 54443322  4788889888887766431111 11122 22244444443322   269999999877


Q ss_pred             eEEccc
Q 044903          318 WKEVVK  323 (387)
Q Consensus       318 W~~v~~  323 (387)
                      ++.+..
T Consensus       358 ~~~l~~  363 (417)
T TIGR02800       358 ERVLTD  363 (417)
T ss_pred             eEEccC
Confidence            766553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.03  E-value=8.3  Score=36.58  Aligned_cols=199  Identities=15%  Similarity=0.144  Sum_probs=109.9

Q ss_pred             EEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903          143 VSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       143 ~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd  220 (387)
                      +..++.+|+...        ...++.+|+.+.+  |+....-............+|+||+-...+         .+.+||
T Consensus        65 ~~~dg~v~~~~~--------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g---------~~y~ld  127 (370)
T COG1520          65 ADGDGTVYVGTR--------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG---------KLYALD  127 (370)
T ss_pred             EeeCCeEEEecC--------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc---------eEEEEE
Confidence            567888888621        1268889999887  876433100001111122267777653321         688999


Q ss_pred             CCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccc-ccCCCCCcEEEEeCCe
Q 044903          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREG-MVRGWRGPVAAMDEEV  297 (387)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~-~~~~~~~~~~~~~~g~  297 (387)
                      ..+.+..  |..-.+.. ..   -....++.++.+|+.. ....++++|.++.  .|+.--.. ......+... ..++.
T Consensus       128 ~~~G~~~--W~~~~~~~-~~---~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~  199 (370)
T COG1520         128 ASTGTLV--WSRNVGGS-PY---YASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT  199 (370)
T ss_pred             CCCCcEE--EEEecCCC-eE---EecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecce
Confidence            9777755  98766441 11   1244666788888774 2247788888754  78743321 1222222222 55677


Q ss_pred             EEEEeCC-CCeEEEEeCCCC--ceEEcccccc--------ccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          298 LYGIDEN-SCTLSKYDEVMD--DWKEVVKSDL--------LKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       298 ly~~g~~-~~~v~~yd~~~~--~W~~v~~~~~--------~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      +|+-... ++.++.+|+++.  .|+.-...+.        .......+..++.+|.. ..++.++.+|...  ....|+.
T Consensus       200 vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~g~~~~l~~~~--G~~~W~~  276 (370)
T COG1520         200 VYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG-SYGGKLLCLDADT--GELIWSF  276 (370)
T ss_pred             EEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE-ecCCeEEEEEcCC--CceEEEE
Confidence            8877532 457899998654  6774211111        11122334445555444 2345577777763  2467888


Q ss_pred             cCC
Q 044903          367 DTP  369 (387)
Q Consensus       367 ~~~  369 (387)
                      ..+
T Consensus       277 ~~~  279 (370)
T COG1520         277 PAG  279 (370)
T ss_pred             ecc
Confidence            665

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=92.81  E-value=6.4  Score=34.67  Aligned_cols=176  Identities=10%  Similarity=0.034  Sum_probs=82.8

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEE--eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAG--YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+-.||..++.=..+...-..+...+++  -.+|+-...||.+.        .+.++|...-.    -...-..+.+. 
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg--------t~kIWdlR~~~----~qR~~~~~spV-  127 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG--------TVKIWDLRSLS----CQRNYQHNSPV-  127 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc--------eEEEEeccCcc----cchhccCCCCc-
Confidence            45678888776522221111122222222  23556555666543        56666655433    22221122111 


Q ss_pred             cccceeEEEECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceE-
Q 044903          242 SREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWK-  319 (387)
Q Consensus       242 ~~~~~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~-  319 (387)
                          ...+..-++--++.|.. ..|.+.|+.++........-....-....+..+|.+.+-..+.|..++|+.-++.-. 
T Consensus       128 ----n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  128 ----NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             ----ceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence                22233334333333333 689999999987654431011111112333445665555556788999988764221 


Q ss_pred             Ecccccc--ccCc---eeEEEeCCeEEEEecCCceEEEEEec
Q 044903          320 EVVKSDL--LKGA---RHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       320 ~v~~~~~--~~~~---~~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ++.+..-  .+..   -+...-+++.++..+.+..+.+++.+
T Consensus       204 ~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  204 ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence            1211111  1111   23334566666666655555555554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=92.72  E-value=3.2  Score=39.94  Aligned_cols=92  Identities=12%  Similarity=0.019  Sum_probs=58.7

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEE-
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAA-  292 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~-  292 (387)
                      .|..||.....+++.|.+....|...     .+....+..|++--|++..|..||...+.=. .+...-|.    .+++ 
T Consensus       188 ~VtlwDv~g~sp~~~~~~~HsAP~~g-----icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl----stvaf  258 (673)
T KOG4378|consen  188 AVTLWDVQGMSPIFHASEAHSAPCRG-----ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL----STVAF  258 (673)
T ss_pred             eEEEEeccCCCcccchhhhccCCcCc-----ceecCCccceEEEecccceEEEeecccccccceeeecCCc----ceeee
Confidence            56777877777777788877666332     3344557778887788889999998755322 22221121    2333 


Q ss_pred             EeCCeEEEEeCCCCeEEEEeCCC
Q 044903          293 MDEEVLYGIDENSCTLSKYDEVM  315 (387)
Q Consensus       293 ~~~g~ly~~g~~~~~v~~yd~~~  315 (387)
                      ..+|...+.|...|+|+.||+..
T Consensus       259 ~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  259 SECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             cCCceEEEeecCCceEEEEeccc
Confidence            33466666776778999999854

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.56  E-value=7.4  Score=34.76  Aligned_cols=158  Identities=14%  Similarity=0.045  Sum_probs=90.6

Q ss_pred             ceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCcee---eCCCCCC---------CceeeeEEeeCCEEEEEecCCC
Q 044903          139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWT---FGPELVT---------PRRWCAAGYSRGAVYVASGIGS  206 (387)
Q Consensus       139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~---~l~~~~~---------~r~~~~~~~~~~~iyv~GG~~~  206 (387)
                      |.+.++.+|.+|.--.       ..+.+..||..+++-.   .||....         +-.....++-.+-|+|+=....
T Consensus        71 GtG~vVYngslYY~~~-------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~  143 (250)
T PF02191_consen   71 GTGHVVYNGSLYYNKY-------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED  143 (250)
T ss_pred             cCCeEEECCcEEEEec-------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCC
Confidence            4556677787777432       3578899999998655   4543221         1123455666777888755433


Q ss_pred             CCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccc
Q 044903          207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGM  282 (387)
Q Consensus       207 ~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~  282 (387)
                      .  . ..-.+-..|+.+-+..-+|..-  .+...    ...+.++=|.||++....    ....+||+.+++=..+...+
T Consensus       144 ~--~-g~ivvskld~~tL~v~~tw~T~--~~k~~----~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f  214 (250)
T PF02191_consen  144 N--N-GNIVVSKLDPETLSVEQTWNTS--YPKRS----AGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPF  214 (250)
T ss_pred             C--C-CcEEEEeeCcccCceEEEEEec--cCchh----hcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeee
Confidence            1  1 1112333444332211127643  22222    133556678999986654    34578999988766555444


Q ss_pred             cCCCCCcEEEEe---CCeEEEEeCCCCeEEEEeCC
Q 044903          283 VRGWRGPVAAMD---EEVLYGIDENSCTLSKYDEV  314 (387)
Q Consensus       283 ~~~~~~~~~~~~---~g~ly~~g~~~~~v~~yd~~  314 (387)
                      +......++.-.   +.+||+.+  +|.+..|+..
T Consensus       215 ~~~~~~~~~l~YNP~dk~LY~wd--~G~~v~Y~v~  247 (250)
T PF02191_consen  215 PNPYGNISMLSYNPRDKKLYAWD--NGYQVTYDVR  247 (250)
T ss_pred             ccccCceEeeeECCCCCeEEEEE--CCeEEEEEEE
Confidence            444444444433   56899984  6888888764

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.55  E-value=7.4  Score=34.75  Aligned_cols=190  Identities=15%  Similarity=0.113  Sum_probs=99.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeC-----CCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDP-----ICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp-----~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd  220 (387)
                      ++++|++.+...      +.+..|..     ..++..+.-.+|.+-...+.++.+|.+|---        ...+.+..||
T Consensus        30 ~~~iy~~~~~~~------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~--------~~s~~Ivkyd   95 (250)
T PF02191_consen   30 SEKIYVTSGFSG------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNK--------YNSRNIVKYD   95 (250)
T ss_pred             CCCEEEECccCC------CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEe--------cCCceEEEEE
Confidence            467888877533      24444432     2333333334455555667777888887642        2345889999


Q ss_pred             CCCCccccCeEEcCCCCCC-c--cc---ccceeEEEECCEEEEE---eeeC--CeEEEEECC----CCceeeccccccCC
Q 044903          221 LMNGEKNSRWEKTGELKDG-R--FS---REAIDAVGWKGKLCLV---NVKG--AEGAVYDVV----ANTWDDMREGMVRG  285 (387)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~-~--~~---~~~~~~v~~~g~lyv~---gg~~--~~i~~yD~~----~~~W~~~~~~~~~~  285 (387)
                      +.+.... .|..++..... +  +.   -.....++-++-|.++   ....  -.+-..|++    ..+|.+-   ....
T Consensus        96 L~t~~v~-~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~---~~k~  171 (250)
T PF02191_consen   96 LTTRSVV-ARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS---YPKR  171 (250)
T ss_pred             CcCCcEE-EEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec---cCch
Confidence            9998710 13334322111 0  00   0112233434445555   1111  123334554    3477753   2223


Q ss_pred             CCCcEEEEeCCeEEEEeCCC---Ce-EEEEeCCCCceEEccc-cccccCceeEEEe---CCeEEEEecCCceEEEEEec
Q 044903          286 WRGPVAAMDEEVLYGIDENS---CT-LSKYDEVMDDWKEVVK-SDLLKGARHAAAG---GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       286 ~~~~~~~~~~g~ly~~g~~~---~~-v~~yd~~~~~W~~v~~-~~~~~~~~~~~~~---~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ..+.+-.+| |.||++...+   .. .++||..+++=..+.. .+.......++.+   +.+||+.  +++..+.|++.
T Consensus       172 ~~~naFmvC-GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w--d~G~~v~Y~v~  247 (250)
T PF02191_consen  172 SAGNAFMVC-GVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW--DNGYQVTYDVR  247 (250)
T ss_pred             hhcceeeEe-eEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE--ECCeEEEEEEE
Confidence            334455566 6999998543   22 6889998775554332 1222334455554   6788888  45667777764

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.52  E-value=5.5  Score=40.42  Aligned_cols=107  Identities=12%  Similarity=0.038  Sum_probs=65.1

Q ss_pred             EEEECCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc-eEEccccc
Q 044903          248 AVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD-WKEVVKSD  325 (387)
Q Consensus       248 ~v~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~-W~~v~~~~  325 (387)
                      +..-||.+.+.|+.+.++-+||..+.-.. +... ...+..+-+. ...|+..+...-+|+|..||.+.-+ .+....+ 
T Consensus       357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-  433 (893)
T KOG0291|consen  357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQF-TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-  433 (893)
T ss_pred             EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEE-EecCCEEEEeecCCeEEeeeecccceeeeecCC-
Confidence            33447888888888888999987765332 2221 2222211222 2245555555578999999997642 3333332 


Q ss_pred             cccCceeEEEeC--CeEEEEecC-CceEEEEEecCC
Q 044903          326 LLKGARHAAAGG--GRVCAVCEN-GGGIVVVDVKAA  358 (387)
Q Consensus       326 ~~~~~~~~~~~~--~~l~v~gg~-~~~i~v~d~~~~  358 (387)
                       .+..+.+++.+  |.|+..|.- ...|+||++.++
T Consensus       434 -~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG  468 (893)
T KOG0291|consen  434 -EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG  468 (893)
T ss_pred             -CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence             22345566665  889888764 478999988866

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=92.34  E-value=8.2  Score=34.92  Aligned_cols=124  Identities=14%  Similarity=0.053  Sum_probs=70.5

Q ss_pred             EECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          250 GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       250 ~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      ..+..=-+.|+-+..+..||..+..=..+... ..+.  .++.. ......+-|+-++.|.+||+.+..  .+.......
T Consensus        62 F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth-~~~i--~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d~~k  136 (323)
T KOG1036|consen   62 FADESTIVTGGLDGQVRRYDLNTGNEDQIGTH-DEGI--RCIEYSYEVGCVISGSWDKTIKFWDPRNKV--VVGTFDQGK  136 (323)
T ss_pred             ccCCceEEEeccCceEEEEEecCCcceeeccC-CCce--EEEEeeccCCeEEEcccCccEEEEeccccc--cccccccCc
Confidence            33433334555567899999988765555431 1111  12221 112345666778899999997621  111111111


Q ss_pred             CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE-cCCCCceeeEEEecc
Q 044903          329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHILP  381 (387)
Q Consensus       329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~-~~~~~~~~~~~~~~~  381 (387)
                       ...+....|..+|+|..+..+.+||..+...+.  +. .-+-.++..+|..+|
T Consensus       137 -kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~p  187 (323)
T KOG1036|consen  137 -KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVP  187 (323)
T ss_pred             -eEEEEeccCCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEec
Confidence             344556667777887889999999999652221  22 334445667777777

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=92.25  E-value=6.5  Score=34.64  Aligned_cols=140  Identities=14%  Similarity=0.174  Sum_probs=77.6

Q ss_pred             CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeecc-ccccCCCCCcEE
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMR-EGMVRGWRGPVA  291 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~  291 (387)
                      ...|-.+|..|++    =..--.++.+.-    ..-+.-+|++..+. ++..+.-.|+.+  ...+. ..+|......++
T Consensus       164 d~tVRLWD~rTgt----~v~sL~~~s~Vt----SlEvs~dG~ilTia-~gssV~Fwdaks--f~~lKs~k~P~nV~SASL  232 (334)
T KOG0278|consen  164 DKTVRLWDHRTGT----EVQSLEFNSPVT----SLEVSQDGRILTIA-YGSSVKFWDAKS--FGLLKSYKMPCNVESASL  232 (334)
T ss_pred             CCceEEEEeccCc----EEEEEecCCCCc----ceeeccCCCEEEEe-cCceeEEecccc--ccceeeccCccccccccc
Confidence            3467778888876    322222222221    22234467766552 223444445432  22222 113333222222


Q ss_pred             EEeCCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCceeEE--EeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          292 AMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       292 ~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                       --+..+|+.|+++..++.||..++.  ++... ....++.-|+  .-+|.+|..|..++.|-+|.+..+...+.|.-
T Consensus       233 -~P~k~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~~~  307 (334)
T KOG0278|consen  233 -HPKKEFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLWKC  307 (334)
T ss_pred             -cCCCceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhccc
Confidence             2244689999999999999998873  33331 2222232233  45999999988888888888776555567774

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=91.37  E-value=5  Score=33.15  Aligned_cols=76  Identities=8%  Similarity=0.085  Sum_probs=46.6

Q ss_pred             EEEECCEEEEEeeeC---C--eEEEEECCCCce-eeccccccCC--CCCcEE-EEeCCeEEEEeC--CC--CeEEEEe--
Q 044903          248 AVGWKGKLCLVNVKG---A--EGAVYDVVANTW-DDMREGMVRG--WRGPVA-AMDEEVLYGIDE--NS--CTLSKYD--  312 (387)
Q Consensus       248 ~v~~~g~lyv~gg~~---~--~i~~yD~~~~~W-~~~~~~~~~~--~~~~~~-~~~~g~ly~~g~--~~--~~v~~yd--  312 (387)
                      +|.++|.+|.++...   .  .|.+||+.+++. +.++.+....  .....+ ++.+++|-++..  ..  -+||+-+  
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~   80 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY   80 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence            367899999987665   1  699999999999 6665321111  112233 234677777742  12  2355544  


Q ss_pred             -CCCCceEEccc
Q 044903          313 -EVMDDWKEVVK  323 (387)
Q Consensus       313 -~~~~~W~~v~~  323 (387)
                       ....+|+++-.
T Consensus        81 ~~~~~SWtK~~~   92 (164)
T PF07734_consen   81 GYGKESWTKLFT   92 (164)
T ss_pred             ccCcceEEEEEE
Confidence             23779999764

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=91.19  E-value=15  Score=35.64  Aligned_cols=180  Identities=13%  Similarity=0.033  Sum_probs=87.3

Q ss_pred             CCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc
Q 044903          163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       163 ~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~  242 (387)
                      ...++++|.....=+.+..-...-....-..-+.+|+... ...     ....++++|+.+++    .+.+...+.... 
T Consensus       181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s-~~~-----g~~~i~~~dl~~g~----~~~l~~~~g~~~-  249 (435)
T PRK05137        181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMS-YAN-----GRPRVYLLDLETGQ----RELVGNFPGMTF-  249 (435)
T ss_pred             ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEE-ecC-----CCCEEEEEECCCCc----EEEeecCCCccc-
Confidence            4678888876554344432211111111122233443332 211     12478999999988    777765443211 


Q ss_pred             ccceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCc
Q 044903          243 REAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSKYDEVMDD  317 (387)
Q Consensus       243 ~~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--~~v~~yd~~~~~  317 (387)
                         .....-+|+ |++.....  ..++.+|++++.-+.+....... ..+...-.+.+|++.....  ..|+++|.++..
T Consensus       250 ---~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        250 ---APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAID-TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             ---CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCcc-CceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence               122233554 43332222  56888899888766664321111 1122222334455544222  368999988876


Q ss_pred             eEEccccccccCceeEEEeCCeEEEEecC--CceEEEEEecC
Q 044903          318 WKEVVKSDLLKGARHAAAGGGRVCAVCEN--GGGIVVVDVKA  357 (387)
Q Consensus       318 W~~v~~~~~~~~~~~~~~~~~~l~v~gg~--~~~i~v~d~~~  357 (387)
                      .+.+..............-+..|++....  ...++++|...
T Consensus       326 ~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        326 PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            66654321111112222223344444322  25688888753

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.98  E-value=15  Score=35.22  Aligned_cols=116  Identities=14%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             eEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC-----ceeeccccccCCCCCcEEE-EeCCeEEEEeC
Q 044903          230 WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-----TWDDMREGMVRGWRGPVAA-MDEEVLYGIDE  303 (387)
Q Consensus       230 W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~-----~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~  303 (387)
                      |..+..-.....   .......+|.+++++..+ .+..-+-.-.     .|.+++.. ..+..-..++ ..++.+++.| 
T Consensus       272 W~~~~~~~~~~l---~~v~~~~dg~l~l~g~~G-~l~~S~d~G~~~~~~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G-  345 (398)
T PLN00033        272 WQPHNRASARRI---QNMGWRADGGLWLLTRGG-GLYVSKGTGLTEEDFDFEEADIK-SRGFGILDVGYRSKKEAWAAG-  345 (398)
T ss_pred             eEEecCCCccce---eeeeEcCCCCEEEEeCCc-eEEEecCCCCcccccceeecccC-CCCcceEEEEEcCCCcEEEEE-
Confidence            887763322211   112223578888886544 2333222333     34544321 1111111222 3356788887 


Q ss_pred             CCCeEEEEeCCCCceEEcccccccc-CceeEE-EeCCeEEEEecCCceEEE
Q 044903          304 NSCTLSKYDEVMDDWKEVVKSDLLK-GARHAA-AGGGRVCAVCENGGGIVV  352 (387)
Q Consensus       304 ~~~~v~~yd~~~~~W~~v~~~~~~~-~~~~~~-~~~~~l~v~gg~~~~i~v  352 (387)
                      ..|.+++-....+.|+.+....... .-+.+. ..+++.|+.| .++.|+.
T Consensus       346 ~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~  395 (398)
T PLN00033        346 GSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR  395 (398)
T ss_pred             CCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence            4677888888889999987433332 234444 3458999994 4344443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=90.84  E-value=12  Score=33.75  Aligned_cols=189  Identities=14%  Similarity=0.118  Sum_probs=106.3

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC----CCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP----ELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~----~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      -.+..+..||.+       +...+|+..++.=.-..    .++....+.+++. +++.-.+.|..+        .+.-.+
T Consensus       107 PSg~~VAcGGLd-------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalW  171 (343)
T KOG0286|consen  107 PSGNFVACGGLD-------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALW  171 (343)
T ss_pred             CCCCeEEecCcC-------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEE
Confidence            467788888854       45688988865333221    2233334444443 344444443322        255677


Q ss_pred             eCCCCccccCeEEcCCCCCCccccccee--EEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCC
Q 044903          220 DLMNGEKNSRWEKTGELKDGRFSREAID--AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEE  296 (387)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~~~~~~--~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g  296 (387)
                      |.++.+    =...  +. . ...+..+  ....+++.|+-|+.+.....+|.....-.+.=.+-...  -.++. .-+|
T Consensus       172 Die~g~----~~~~--f~-G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD--INsv~ffP~G  241 (343)
T KOG0286|consen  172 DIETGQ----QTQV--FH-G-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD--INSVRFFPSG  241 (343)
T ss_pred             Ecccce----EEEE--ec-C-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc--cceEEEccCC
Confidence            777776    1111  00 0 0000000  01116788888888777777787666443321111111  11222 3356


Q ss_pred             eEEEEeCCCCeEEEEeCCCCceEEcccccc-ccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          297 VLYGIDENSCTLSKYDEVMDDWKEVVKSDL-LKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~-~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .-|..|.+++....||+..+.=..+-..+. ..+ .-..+...|++++.|..+.++.|||.-..
T Consensus       242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence            677788788899999998875444433322 222 23345678999999888999999998865

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=90.69  E-value=4.8  Score=36.11  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=40.4

Q ss_pred             cCCCCCCcccccceeEEE--ECCE--EEEEeeeC-------------------CeEEEEECCCCceeecc-ccccCCCCC
Q 044903          233 TGELKDGRFSREAIDAVG--WKGK--LCLVNVKG-------------------AEGAVYDVVANTWDDMR-EGMVRGWRG  288 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~v~--~~g~--lyv~gg~~-------------------~~i~~yD~~~~~W~~~~-~~~~~~~~~  288 (387)
                      +.++|.+|++   |..-+  -.||  ..++||+.                   ..++..|++-+..+.-. +.+..|...
T Consensus        81 vGdvP~aRYG---Ht~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF  157 (337)
T PF03089_consen   81 VGDVPEARYG---HTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF  157 (337)
T ss_pred             cCCCCccccc---ceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEE
Confidence            4577887766   54433  3444  44556653                   34555566655544221 124455555


Q ss_pred             cEEEEeCCeEEEEeCC
Q 044903          289 PVAAMDEEVLYGIDEN  304 (387)
Q Consensus       289 ~~~~~~~g~ly~~g~~  304 (387)
                      +.+.+.++.+|++||.
T Consensus       158 Hvslar~D~VYilGGH  173 (337)
T PF03089_consen  158 HVSLARNDCVYILGGH  173 (337)
T ss_pred             EEEEecCceEEEEccE
Confidence            6666778899999973

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>smart00284 OLF Olfactomedin-like domains

Probab=90.52  E-value=12  Score=33.33  Aligned_cols=158  Identities=16%  Similarity=0.103  Sum_probs=86.3

Q ss_pred             ceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCC------------ceeeeEEeeCCEEEEEecCCC
Q 044903          139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP------------RRWCAAGYSRGAVYVASGIGS  206 (387)
Q Consensus       139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~------------r~~~~~~~~~~~iyv~GG~~~  206 (387)
                      |...++.+|.+|.--.       ....+..||..+++-.....+|.+            -.....++-.+-|+|+=....
T Consensus        76 GtG~VVYngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~  148 (255)
T smart00284       76 GTGVVVYNGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ  148 (255)
T ss_pred             cccEEEECceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC
Confidence            4567888999988533       236789999999976533223321            123445566666777633322


Q ss_pred             CCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccc
Q 044903          207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGM  282 (387)
Q Consensus       207 ~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~  282 (387)
                      .  . ..-.+-..|+.+-+..-+|..-  .+...    ...+.++=|.||++....    ....+||+.+++=..+...+
T Consensus       149 ~--~-g~ivvSkLnp~tL~ve~tW~T~--~~k~s----a~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f  219 (255)
T smart00284      149 N--A-GKIVISKLNPATLTIENTWITT--YNKRS----ASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPF  219 (255)
T ss_pred             C--C-CCEEEEeeCcccceEEEEEEcC--CCccc----ccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeee
Confidence            0  0 1112233444432211127662  22222    133455568899986422    44678999887533333223


Q ss_pred             cCCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 044903          283 VRGWRGPVAA---MDEEVLYGIDENSCTLSKYDEV  314 (387)
Q Consensus       283 ~~~~~~~~~~---~~~g~ly~~g~~~~~v~~yd~~  314 (387)
                      +......++.   -.+.+||+.  ++|.+..||+.
T Consensus       220 ~n~y~~~s~l~YNP~d~~LY~w--dng~~l~Y~v~  252 (255)
T smart00284      220 ENMYEYISMLDYNPNDRKLYAW--NNGHLVHYDIA  252 (255)
T ss_pred             ccccccceeceeCCCCCeEEEE--eCCeEEEEEEE
Confidence            3333333443   235689988  47888888864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=90.51  E-value=13  Score=36.04  Aligned_cols=94  Identities=13%  Similarity=0.106  Sum_probs=55.6

Q ss_pred             eCCeEEEEECCCC----ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe
Q 044903          261 KGAEGAVYDVVAN----TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG  336 (387)
Q Consensus       261 ~~~~i~~yD~~~~----~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~  336 (387)
                      +...+..||....    .|.+.-..+.   ++.+..-.+..|++--|.+.+|..||...++=+.-..-..+. ...++.-
T Consensus       185 d~G~VtlwDv~g~sp~~~~~~~HsAP~---~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl-stvaf~~  260 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSPIFHASEAHSAPC---RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL-STVAFSE  260 (673)
T ss_pred             cCCeEEEEeccCCCcccchhhhccCCc---CcceecCCccceEEEecccceEEEeecccccccceeeecCCc-ceeeecC
Confidence            3346677887644    4554433222   234455556778887788999999999755433211111111 1123344


Q ss_pred             CCeEEEEecCCceEEEEEecCC
Q 044903          337 GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       337 ~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +|.++++|...+.++.||+...
T Consensus       261 ~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  261 CGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             CceEEEeecCCceEEEEecccC
Confidence            6777778666789999999854

>PRK04043 tolB translocation protein TolB; Provisional

Probab=90.51  E-value=18  Score=35.13  Aligned_cols=175  Identities=3%  Similarity=-0.075  Sum_probs=96.0

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      .++|++|..+++=+.+...+..-.......-+.+|.+.-...      ....++++|..+++    ++.+...+...   
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~dl~~g~----~~~LT~~~~~d---  279 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK------GQPDIYLYDTNTKT----LTQITNYPGID---  279 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC------CCcEEEEEECCCCc----EEEcccCCCcc---
Confidence            368888988887777765322111122222234565543321      13478999999998    98887544211   


Q ss_pred             cceeEEEECC-EEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--------CeEEEEe
Q 044903          244 EAIDAVGWKG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------CTLSKYD  312 (387)
Q Consensus       244 ~~~~~v~~~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--------~~v~~yd  312 (387)
                       ......-|| +||+.....  ..++++|+.+++.+.+...   +.......-.|+.|.+.....        ..|+++|
T Consensus       280 -~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d  355 (419)
T PRK04043        280 -VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS  355 (419)
T ss_pred             -CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence             111222244 577665433  5789999998888666431   111222223344454443221        3699999


Q ss_pred             CCCCceEEccccccccCceeEEEeCCe-EEEEecC--CceEEEEEecC
Q 044903          313 EVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKA  357 (387)
Q Consensus       313 ~~~~~W~~v~~~~~~~~~~~~~~~~~~-l~v~gg~--~~~i~v~d~~~  357 (387)
                      +++..++.+.....  .......-+|+ |++....  ...++++++..
T Consensus       356 ~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        356 TNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCCCeEECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            99998888765321  11223344555 4444322  24577777773

>PRK00178 tolB translocation protein TolB; Provisional

Probab=90.48  E-value=18  Score=35.09  Aligned_cols=136  Identities=15%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEee-eC-CeEEEEECCCCceeeccccccCCCCCcE
Q 044903          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      ..++++|..+++    -+.+...+....    .....-+|+ |++... .+ ..++++|+.++..+.+....... ..+.
T Consensus       223 ~~l~~~~l~~g~----~~~l~~~~g~~~----~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~-~~~~  293 (430)
T PRK00178        223 PRIFVQNLDTGR----REQITNFEGLNG----APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAID-TEPF  293 (430)
T ss_pred             CEEEEEECCCCC----EEEccCCCCCcC----CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCc-CCeE
Confidence            478899999888    666654332110    112222454 443322 22 57899999998887765321111 1122


Q ss_pred             EEEeCCeEEEEeCCC--CeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC--CceEEEEEecCC
Q 044903          291 AAMDEEVLYGIDENS--CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~g~ly~~g~~~--~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~--~~~i~v~d~~~~  358 (387)
                      ..-.+.+|++.....  ..|+.+|.++..++.+..............-++.|++....  ...++++|..++
T Consensus       294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence            222344566665333  35899999888887764322111111122234455555432  246888888754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.47  E-value=9.5  Score=35.47  Aligned_cols=64  Identities=13%  Similarity=0.121  Sum_probs=36.3

Q ss_pred             eCCeEEEEeC--CC-------CeEEEEeCCCCceEEccccccccCceeEEEeCCe--EEEEecCCceEEEEEecCC
Q 044903          294 DEEVLYGIDE--NS-------CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~g~ly~~g~--~~-------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~--l~v~gg~~~~i~v~d~~~~  358 (387)
                      ..++||++-.  ..       ..||+||+++++=..-.+++......++ .-+++  ||.+..++..++++|..++
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~V-sqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAV-SQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEE-ESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEE-ccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            3578998741  11       2599999999843332222222222222 33444  4445456788999999965

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK04922 tolB translocation protein TolB; Provisional

Probab=90.32  E-value=19  Score=35.07  Aligned_cols=177  Identities=7%  Similarity=-0.029  Sum_probs=93.6

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|..+++-+.+...+..........-+.+|++....+.      ...+.++|..+++    -+.+..-....   
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~----~~~lt~~~~~~---  294 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ----LTRLTNHFGID---  294 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCC----eEECccCCCCc---
Confidence            5689999999888777655422111122222445655433211      2478899998887    66665322111   


Q ss_pred             cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W  318 (387)
                       ......-+|+ |++.....  ..++.+|..+++.+.+...-.. ...+...-.++.|++.....+  .|++||+++...
T Consensus       295 -~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~-~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        295 -TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY-NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             -cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence             1112223554 44443222  4688888888877766421111 112222233556666654333  599999988887


Q ss_pred             EEccccccccCceeEEEeCCeEEEEecC---CceEEEEEecC
Q 044903          319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKA  357 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~---~~~i~v~d~~~  357 (387)
                      +.+...... ... ....+|+.+++...   ...++++|...
T Consensus       373 ~~Lt~~~~~-~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        373 RTLTPGSLD-ESP-SFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             EECCCCCCC-CCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence            766532211 112 33445654444332   35678888863

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.25  E-value=6.3  Score=34.98  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=66.7

Q ss_pred             eeEEEECC-E-EEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceE
Q 044903          246 IDAVGWKG-K-LCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD--DWK  319 (387)
Q Consensus       246 ~~~v~~~g-~-lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~--~W~  319 (387)
                      ...|++++ + +.++|.+...+.+-|+.++  .|+.+-..-.    ..++.++|+. .++|...+.++..+.++.  -|.
T Consensus        14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~Ri----E~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~   88 (354)
T KOG4649|consen   14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRI----ECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWN   88 (354)
T ss_pred             CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCcee----eeeeEEECCE-EEEEEccCcEEEEEecchhheee
Confidence            44566653 3 4445555677888899877  6987743222    2244556664 778888888888888775  465


Q ss_pred             EccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeE
Q 044903          320 EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       320 ~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~  365 (387)
                      -+.. ........+...+|-| -.|..+++.+++|+.+  .+..|+
T Consensus        89 f~~~-~~vk~~a~~d~~~glI-ycgshd~~~yalD~~~--~~cVyk  130 (354)
T KOG4649|consen   89 FVIL-ETVKVRAQCDFDGGLI-YCGSHDGNFYALDPKT--YGCVYK  130 (354)
T ss_pred             eeeh-hhhccceEEcCCCceE-EEecCCCcEEEecccc--cceEEe
Confidence            4332 2222233333334444 4456778888888884  345555

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=90.19  E-value=16  Score=34.01  Aligned_cols=147  Identities=10%  Similarity=0.136  Sum_probs=77.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCcee--eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW--CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++.+.+.||.+       +..++++..+..|--  .+......  ...-..++.+.+.|+...        .+.++...+
T Consensus        75 ~~~l~aTGGgD-------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG--------~v~v~~~st  137 (399)
T KOG0296|consen   75 NNNLVATGGGD-------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG--------KVLVFKVST  137 (399)
T ss_pred             CCceEEecCCC-------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc--------cEEEEEccc
Confidence            56778888853       345888888887543  12211111  222234666777776644        566666666


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeC
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE  303 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~  303 (387)
                      +...  |....++..-..- ..|.    .+.+.+.|.....+++|....+.=.++-.+.... ....-...+|+..+.+.
T Consensus       138 g~~~--~~~~~e~~dieWl-~WHp----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~-ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  138 GGEQ--WKLDQEVEDIEWL-KWHP----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP-CTCGEFIPDGKRILTGY  209 (399)
T ss_pred             CceE--EEeecccCceEEE-Eecc----cccEEEeecCCCcEEEEECCCcceeeEecCCCCC-cccccccCCCceEEEEe
Confidence            5533  6654322211100 0011    2345555555567788876664222221111111 00011134567777777


Q ss_pred             CCCeEEEEeCCCCc
Q 044903          304 NSCTLSKYDEVMDD  317 (387)
Q Consensus       304 ~~~~v~~yd~~~~~  317 (387)
                      .++.|.+||+++..
T Consensus       210 ~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQ  223 (399)
T ss_pred             cCceEEEEecCCCc
Confidence            89999999999873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=89.68  E-value=21  Score=34.68  Aligned_cols=176  Identities=9%  Similarity=-0.035  Sum_probs=87.2

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|..+++=+.+...+......+...-+.+|++....+.      ...++.+|..+..    .+.+..-...    
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~----  285 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSG----LRRLTQSSGI----  285 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC------CceEEEEECCCCC----cEECCCCCCC----
Confidence            4689999988876666544321111111222345655433221      2467888887776    6665432111    


Q ss_pred             cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W  318 (387)
                      .......-||+ |++.+...  ..++.+|..++..+.+..... ....+...-.|..|++.....+  .|++||..+...
T Consensus       286 ~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        286 DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS-YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC-CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            11122233554 54443222  467777777766665532110 0111222223445555543333  599999988877


Q ss_pred             EEccccccccCceeEEEeCCeEEEEecC---CceEEEEEec
Q 044903          319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVK  356 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~---~~~i~v~d~~  356 (387)
                      +.+......  ......-+|+.+++...   ...++++|..
T Consensus       365 ~~lt~~~~~--~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        365 TALTDTTRD--ESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             EEccCCCCc--cCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence            766432111  12233445655555432   2346777775

>smart00284 OLF Olfactomedin-like domains

Probab=89.64  E-value=15  Score=32.87  Aligned_cols=188  Identities=13%  Similarity=0.109  Sum_probs=101.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEe----CCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFD----PICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd----p~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~  221 (387)
                      ++++|++.+...    ..+.+..|.    ....++.+.-.+|.+-...+.++.+|.+|.--.        ....+..||+
T Consensus        34 ~~~~wv~~~~~~----~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~--------~s~~iiKydL  101 (255)
T smart00284       34 KSLYWYMPLNTR----VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF--------NSHDICRFDL  101 (255)
T ss_pred             CceEEEEccccC----CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec--------CCccEEEEEC
Confidence            467888765321    123344443    233344333345666667778889999987532        2347899999


Q ss_pred             CCCccccCeEEcCCCCCCccc---------ccceeEEEECCEEEEE---eeeCCeE--EEEECCC----Cceeecccccc
Q 044903          222 MNGEKNSRWEKTGELKDGRFS---------REAIDAVGWKGKLCLV---NVKGAEG--AVYDVVA----NTWDDMREGMV  283 (387)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~---------~~~~~~v~~~g~lyv~---gg~~~~i--~~yD~~~----~~W~~~~~~~~  283 (387)
                      .+.+    =.....+|...+.         -.....++-.+-|.++   ......|  -..|+.+    ++|.+-   .+
T Consensus       102 ~t~~----v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~---~~  174 (255)
T smart00284      102 TTET----YQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITT---YN  174 (255)
T ss_pred             CCCc----EEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcC---CC
Confidence            9998    4433334432111         0112334444445554   2221222  3456643    478763   22


Q ss_pred             CCCCCcEEEEeCCeEEEEeC-C--CC-eEEEEeCCCCceEEcccccc--ccCceeEEEe---CCeEEEEecCCceEEEEE
Q 044903          284 RGWRGPVAAMDEEVLYGIDE-N--SC-TLSKYDEVMDDWKEVVKSDL--LKGARHAAAG---GGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       284 ~~~~~~~~~~~~g~ly~~g~-~--~~-~v~~yd~~~~~W~~v~~~~~--~~~~~~~~~~---~~~l~v~gg~~~~i~v~d  354 (387)
                      ....+.+-.+| |.||++.. .  .. -.++||..+.+=..+ ..|.  ......+..+   +.+||+.  +++....||
T Consensus       175 k~sa~naFmvC-GvLY~~~s~~~~~~~I~yayDt~t~~~~~~-~i~f~n~y~~~s~l~YNP~d~~LY~w--dng~~l~Y~  250 (255)
T smart00284      175 KRSASNAFMIC-GILYVTRSLGSKGEKVFYAYDTNTGKEGHL-DIPFENMYEYISMLDYNPNDRKLYAW--NNGHLVHYD  250 (255)
T ss_pred             cccccccEEEe-eEEEEEccCCCCCcEEEEEEECCCCcccee-eeeeccccccceeceeCCCCCeEEEE--eCCeEEEEE
Confidence            22234455566 68999974 1  12 278899988652222 2222  2233445544   6788888  566677777


Q ss_pred             ec
Q 044903          355 VK  356 (387)
Q Consensus       355 ~~  356 (387)
                      +.
T Consensus       251 v~  252 (255)
T smart00284      251 IA  252 (255)
T ss_pred             EE
Confidence            65

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=89.41  E-value=16  Score=34.86  Aligned_cols=132  Identities=12%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             eeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCe
Q 044903          188 WCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAE  264 (387)
Q Consensus       188 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~  264 (387)
                      +.+++.. +|-|+..|-.+.        .+.+||.....      .++.+|..-.   ...++.+  ||...+.+..+..
T Consensus       350 ~ts~~fHpDgLifgtgt~d~--------~vkiwdlks~~------~~a~Fpght~---~vk~i~FsENGY~Lat~add~~  412 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDG--------VVKIWDLKSQT------NVAKFPGHTG---PVKAISFSENGYWLATAADDGS  412 (506)
T ss_pred             eEEeeEcCCceEEeccCCCc--------eEEEEEcCCcc------ccccCCCCCC---ceeEEEeccCceEEEEEecCCe
Confidence            4444444 455665554432        67788887765      3333332111   1223332  4444444444456


Q ss_pred             EEEEECCCCc-eeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCC
Q 044903          265 GAVYDVVANT-WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG  338 (387)
Q Consensus       265 i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~  338 (387)
                      +..+|+...+ ..++..  .......+.... .|+...+++++-.|+.|+-+++.|+++.......+....|..+.
T Consensus       413 V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~  486 (506)
T KOG0289|consen  413 VKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE  486 (506)
T ss_pred             EEEEEehhhcccceeec--cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecc
Confidence            8999997553 333331  111111122221 24555555555567888889999999988776665544555543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=89.26  E-value=17  Score=33.02  Aligned_cols=122  Identities=15%  Similarity=0.107  Sum_probs=72.5

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCe---EEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV---LYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~---ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      +|.....|+.+..+..+|+.+++=.++..  ..+- ..++-.+++.   +.+.|.-+.+|..||+...  +.+..+..+.
T Consensus        83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~--Hd~p-vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LPe  157 (347)
T KOG0647|consen   83 DGSKVFSGGCDKQAKLWDLASGQVSQVAA--HDAP-VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLPE  157 (347)
T ss_pred             CCceEEeeccCCceEEEEccCCCeeeeee--cccc-eeEEEEecCCCcceeEecccccceeecccCCC--Ceeeeeeccc
Confidence            45555566667889999999997766652  2211 1122222332   4455666778999998643  2222222222


Q ss_pred             CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE-cCCCCceeeEEEecc
Q 044903          329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHILP  381 (387)
Q Consensus       329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~-~~~~~~~~~~~~~~~  381 (387)
                       .+-++-+...+.|++-.+..|.+|+..+.  +.+.+. .-|..++..+|..++
T Consensus       158 -RvYa~Dv~~pm~vVata~r~i~vynL~n~--~te~k~~~SpLk~Q~R~va~f~  208 (347)
T KOG0647|consen  158 -RVYAADVLYPMAVVATAERHIAVYNLENP--PTEFKRIESPLKWQTRCVACFQ  208 (347)
T ss_pred             -eeeehhccCceeEEEecCCcEEEEEcCCC--cchhhhhcCcccceeeEEEEEe
Confidence             23345556678888777889999999833  333443 556667777776654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=89.06  E-value=29  Score=35.54  Aligned_cols=98  Identities=19%  Similarity=0.225  Sum_probs=56.1

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEEC--CEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEE
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWK--GKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~--g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                      +|-.+|...-.   ..+... -|.+.    .+..+.+|  |.+.+.|... ..|.+.+.++++=-.+-.    |..+|..
T Consensus       415 tVRAwDlkRYr---NfRTft-~P~p~----QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs----GHEgPVs  482 (893)
T KOG0291|consen  415 TVRAWDLKRYR---NFRTFT-SPEPI----QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS----GHEGPVS  482 (893)
T ss_pred             eEEeeeecccc---eeeeec-CCCce----eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc----CCCCcce
Confidence            56677776544   133333 22222    25666777  8898888776 778888888886554432    2222222


Q ss_pred             ---EEeCCeEEEEeCCCCeEEEEeCCCCceEEccccc
Q 044903          292 ---AMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD  325 (387)
Q Consensus       292 ---~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~  325 (387)
                         .-..+.+.+-+..+.+|.+||.-. +|..+.+.+
T Consensus       483 ~l~f~~~~~~LaS~SWDkTVRiW~if~-s~~~vEtl~  518 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGSWDKTVRIWDIFS-SSGTVETLE  518 (893)
T ss_pred             eeEEccccCeEEeccccceEEEEEeec-cCceeeeEe
Confidence               112344555666678899988743 344444443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.97  E-value=33  Score=36.06  Aligned_cols=162  Identities=17%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             eeEEeeCCEEEEEecCCCCC-CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-CeEE
Q 044903          189 CAAGYSRGAVYVASGIGSQF-SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGA  266 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~-~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-~~i~  266 (387)
                      .+..+.+++|||-+...+.+ .......+..||..|++..  |+.-..-|...       ...-+|..|..|+-. ....
T Consensus       310 s~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~--W~~~~g~p~~~-------~~~~~g~~~~~gg~n~W~~~  380 (764)
T TIGR03074       310 SPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV--WAWDPGNPDPT-------APPAPGETYTRNTPNSWSVA  380 (764)
T ss_pred             cCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe--eEEecCCCCcc-------cCCCCCCEeccCCCCccCce
Confidence            34466788877743322211 1123457899999999976  65443212111       111256677755433 4677


Q ss_pred             EEECCCCce-eeccccccCCC---CCcEEEEeCCeEEEEeCCCCe-EEEEeC-CCCceEEccccccccCceeEEEe---C
Q 044903          267 VYDVVANTW-DDMREGMVRGW---RGPVAAMDEEVLYGIDENSCT-LSKYDE-VMDDWKEVVKSDLLKGARHAAAG---G  337 (387)
Q Consensus       267 ~yD~~~~~W-~~~~~~~~~~~---~~~~~~~~~g~ly~~g~~~~~-v~~yd~-~~~~W~~v~~~~~~~~~~~~~~~---~  337 (387)
                      .||++++.- --.....+.-+   +.+..-...+.|+.++-+.|+ .|.|.. ..+.|.-=..     ....++.+   +
T Consensus       381 s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~-----~~p~L~d~~~~~  455 (764)
T TIGR03074       381 SYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVP-----AQPSLVDLPDAD  455 (764)
T ss_pred             EEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCcccccccc-----CCceEEeeecCC
Confidence            889887742 11111111111   001111223445555544443 344433 3344532111     11122221   5


Q ss_pred             Ce---EEEEecCCceEEEEEecCCCCCceeEE
Q 044903          338 GR---VCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       338 ~~---l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      |+   +++.+..++.++++|-.++  .-+|.+
T Consensus       456 G~~~~~v~~~~K~G~~~vlDr~tG--~~l~~~  485 (764)
T TIGR03074       456 GTTVPALVAPTKQGQIYVLDRRTG--EPIVPV  485 (764)
T ss_pred             CcEeeEEEEECCCCEEEEEECCCC--CEEeec
Confidence            52   6666667788999998854  245653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.93  E-value=20  Score=37.57  Aligned_cols=120  Identities=14%  Similarity=0.131  Sum_probs=66.6

Q ss_pred             eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc-cc---ccc----------------eeE
Q 044903          189 CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR-FS---REA----------------IDA  248 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~-~~---~~~----------------~~~  248 (387)
                      .+-.+++++||+....         ..+..+|..|++..  |+.-...+... ..   ++.                ...
T Consensus       188 ~TPlvvgg~lYv~t~~---------~~V~ALDa~TGk~l--W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p  256 (764)
T TIGR03074       188 ATPLKVGDTLYLCTPH---------NKVIALDAATGKEK--WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAP  256 (764)
T ss_pred             cCCEEECCEEEEECCC---------CeEEEEECCCCcEE--EEEcCCCCcccccccccccceEEecCCcccccccccccc
Confidence            4556789999997432         36788899988876  88765443211 00   000                001


Q ss_pred             EEECCEEEEEeeeCCeEEEEECCCC--ceeecc-------ccc---cCCC--CCcEEEEeCCeEEEEeC---------CC
Q 044903          249 VGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMR-------EGM---VRGW--RGPVAAMDEEVLYGIDE---------NS  305 (387)
Q Consensus       249 v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~-------~~~---~~~~--~~~~~~~~~g~ly~~g~---------~~  305 (387)
                      +.++++||+-.. +..+.++|.+++  .|..-.       ..+   +.+.  ...+.++.++.+++-+.         -+
T Consensus       257 ~~~~~rV~~~T~-Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~  335 (764)
T TIGR03074       257 ADCARRIILPTS-DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS  335 (764)
T ss_pred             cccCCEEEEecC-CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Confidence            235567776433 346788888766  464211       111   1111  12233456777776321         14


Q ss_pred             CeEEEEeCCCC--ceEE
Q 044903          306 CTLSKYDEVMD--DWKE  320 (387)
Q Consensus       306 ~~v~~yd~~~~--~W~~  320 (387)
                      |.|..||.++.  .|+-
T Consensus       336 G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       336 GVIRAFDVNTGALVWAW  352 (764)
T ss_pred             cEEEEEECCCCcEeeEE
Confidence            67999998876  4764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=88.70  E-value=22  Score=33.57  Aligned_cols=102  Identities=11%  Similarity=-0.047  Sum_probs=55.7

Q ss_pred             eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEE-eCCEEEEEcCccC--CCCCCCCccEEEeCCCCce
Q 044903          100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LSGKLILLAATTH--NFNPALTRPLIFDPICRTW  176 (387)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~GG~~~--~~~~~~~~~~vydp~t~~W  176 (387)
                      ..++++|..+.+-...-+....                 ++...+ -+..+|+.-.+-.  ......+.+.+||+.|.+=
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~-----------------P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~   89 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFL-----------------PNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP   89 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCC-----------------CceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence            6789999887543221111111                 122233 3456787765211  1123456789999999886


Q ss_pred             ee-CCCCCCCce-------eeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          177 TF-GPELVTPRR-------WCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       177 ~~-l~~~~~~r~-------~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      .. ++.-+.||.       .++...-+..+||..       ......+.+.|..+++
T Consensus        90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-------~~p~~~V~VvD~~~~k  139 (352)
T TIGR02658        90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-------FSPSPAVGVVDLEGKA  139 (352)
T ss_pred             EeEEccCCCchhhccCccceEEECCCCCEEEEec-------CCCCCEEEEEECCCCc
Confidence            54 332233341       233333344678762       1224588999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=88.67  E-value=22  Score=33.68  Aligned_cols=172  Identities=14%  Similarity=0.106  Sum_probs=90.8

Q ss_pred             cEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccccc
Q 044903          166 PLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       166 ~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~  244 (387)
                      ++.+|..|..-+.+=+-..+-+..+++-+ ++.-+|.|+.+.        .+..+|...+... .|+-+..   +..   
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr--------~i~~wdlDgn~~~-~W~gvr~---~~v---  357 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR--------TIIMWDLDGNILG-NWEGVRD---PKV---  357 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC--------cEEEecCCcchhh-ccccccc---cee---
Confidence            55666666554432211112222233332 566688887654        4555555543311 2766542   221   


Q ss_pred             ceeEEEECCE-EEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEcc
Q 044903          245 AIDAVGWKGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVV  322 (387)
Q Consensus       245 ~~~~v~~~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~  322 (387)
                      ..-++..||+ ++.++ ....+..|+.++..=+.+-. ...+.  .+.. .-++++.++.-...++..||.+  .|+.+.
T Consensus       358 ~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lis-e~~~i--ts~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~  431 (519)
T KOG0293|consen  358 HDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLIS-EEQPI--TSFSISKDGKLALVNLQDQEIHLWDLE--ENKLVR  431 (519)
T ss_pred             EEEEEcCCCcEEEEEe-cccceeeechhhhhhhcccc-ccCce--eEEEEcCCCcEEEEEcccCeeEEeecc--hhhHHH
Confidence            1345567777 44443 44678888887665442211 11111  1222 3467788887677889999998  566655


Q ss_pred             ccccc-cCc---eeEEEeCCeEEEEec-CCceEEEEEecCC
Q 044903          323 KSDLL-KGA---RHAAAGGGRVCAVCE-NGGGIVVVDVKAA  358 (387)
Q Consensus       323 ~~~~~-~~~---~~~~~~~~~l~v~gg-~~~~i~v~d~~~~  358 (387)
                      .-... .+.   ..|+..++.-+|..| .+.+|++|+-.++
T Consensus       432 kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg  472 (519)
T KOG0293|consen  432 KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG  472 (519)
T ss_pred             HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence            33222 222   244554554444444 5788888887754

>PTZ00421 coronin; Provisional

Probab=88.25  E-value=7.3  Score=38.64  Aligned_cols=105  Identities=5%  Similarity=-0.010  Sum_probs=57.3

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeec--ccc-ccCCCC--CcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDM--REG-MVRGWR--GPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS  324 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~--~~~-~~~~~~--~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~  324 (387)
                      ++.+.+.++.+..+.+||..++.....  ... ...+..  -..++..  ++.+++.++.++.|.+||.++..-  +...
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l  164 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVI  164 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--EEEE
Confidence            345555566666778888765422110  000 001111  1122222  235677777889999999987642  2222


Q ss_pred             ccccCce-e-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          325 DLLKGAR-H-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ~~~~~~~-~-~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ....... . ....+|.+++.|+.++.+.+||+.++
T Consensus       165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg  200 (493)
T PTZ00421        165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG  200 (493)
T ss_pred             cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence            2222222 2 22347888888888889999998754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=88.08  E-value=19  Score=32.19  Aligned_cols=128  Identities=9%  Similarity=0.076  Sum_probs=82.6

Q ss_pred             CEEEEEeeeCCeEEEEECC-CCceeeccccccC--CCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          253 GKLCLVNVKGAEGAVYDVV-ANTWDDMREGMVR--GWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       253 g~lyv~gg~~~~i~~yD~~-~~~W~~~~~~~~~--~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      |.++.-+|....+.+++.. .++|.-... +..  .+.-.+++- ..|++...+..+..+.+|.-+.+.|+.+..+..+.
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~v-ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE  105 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTV-LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE  105 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEe-ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc
Confidence            5566777777889999988 678875532 111  111223332 24566666667788999999999999988776666


Q ss_pred             CceeEE--EeCCeEEEEecCCceEEEEEecCCCCCceeEE---cCCCCceeeEEEeccccc
Q 044903          329 GARHAA--AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV---DTPLGFEALSVHILPRMS  384 (387)
Q Consensus       329 ~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~---~~~~~~~~~~~~~~~~~~  384 (387)
                      .-..++  ..+|..+....++..++++.+.+.   ++.+.   ..+....+-.|.==|+|+
T Consensus       106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~ded---dEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen  106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDED---DEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEEecCC---CcEEEEeeeccccccccEEEEcCCcc
Confidence            544444  457888888889999999998854   45553   444443333333335543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=88.08  E-value=31  Score=34.76  Aligned_cols=135  Identities=16%  Similarity=0.112  Sum_probs=67.2

Q ss_pred             ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcEE
Q 044903          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVA  291 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~  291 (387)
                      ..+|+|++..+     |-...-++.+.- +.--..+.. +++|+-+|..+ .+-.+|+.+.. =..++..-..-|   ++
T Consensus        47 g~IEiwN~~~~-----w~~~~vi~g~~d-rsIE~L~W~e~~RLFS~g~sg-~i~EwDl~~lk~~~~~d~~gg~IW---si  116 (691)
T KOG2048|consen   47 GNIEIWNLSNN-----WFLEPVIHGPED-RSIESLAWAEGGRLFSSGLSG-SITEWDLHTLKQKYNIDSNGGAIW---SI  116 (691)
T ss_pred             CcEEEEccCCC-----ceeeEEEecCCC-CceeeEEEccCCeEEeecCCc-eEEEEecccCceeEEecCCCccee---EE
Confidence            47899999987     876654443321 222334444 78888776655 55556654332 111111000001   11


Q ss_pred             E-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEE-EEecC-CceEEEEEecCC
Q 044903          292 A-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVC-AVCEN-GGGIVVVDVKAA  358 (387)
Q Consensus       292 ~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~-v~gg~-~~~i~v~d~~~~  358 (387)
                      + ...+....+|+++|.++.++...++-+--..+++-.+..-.+.++.... ++||. ++-|-++|+..+
T Consensus       117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~  186 (691)
T KOG2048|consen  117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG  186 (691)
T ss_pred             EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence            1 1123445555555555555555554433334444444444555555555 55554 344677776643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=87.94  E-value=27  Score=33.89  Aligned_cols=176  Identities=9%  Similarity=-0.019  Sum_probs=90.5

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|..+++-+.+...+..-.......-+.+|++......      ...++++|..+++    .+.+..-....   
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~----~~~lt~~~~~~---  289 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ----IRQVTDGRSNN---  289 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCC----EEEccCCCCCc---
Confidence            4688899988887776655432222222222345655433211      1358889999888    77665332111   


Q ss_pred             cceeEEEECCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 044903          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--~~v~~yd~~~~~W  318 (387)
                       ......-+|+ |++.....  ..++.+|+.+..-+.+..... ....+...-.|..|++.....  ..++++|+++..+
T Consensus       290 -~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        290 -TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             -CceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence             1112223554 44333222  467777887776555532111 111122222344555554333  3589999999988


Q ss_pred             EEccccccccCceeEEEeCCeEEEEecCC---ceEEEEEec
Q 044903          319 KEVVKSDLLKGARHAAAGGGRVCAVCENG---GGIVVVDVK  356 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~l~v~gg~~---~~i~v~d~~  356 (387)
                      +.+.... ..... ...-+|+.+++....   ..+++++..
T Consensus       368 ~~Lt~~~-~~~~p-~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        368 QVLTDTF-LDETP-SIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EEeCCCC-CCCCc-eECCCCCEEEEEEcCCCceEEEEEECC
Confidence            8766321 11122 234566655554432   335666765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=87.86  E-value=26  Score=33.56  Aligned_cols=183  Identities=11%  Similarity=0.089  Sum_probs=92.2

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceee-eEEee--CCEEEEEecCCCCCCCCCCceEEE
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWC-AAGYS--RGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      +++.+++.++.||.+       ..+.++|+.|.+=.+.  +...|... +.+.-  -+.+|.++-         .+++-+
T Consensus       209 avS~Dgkylatgg~d-------~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~---------Drsvkv  270 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRD-------RHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA---------DRSVKV  270 (479)
T ss_pred             EEcCCCcEEEecCCC-------ceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec---------CCceEE
Confidence            445788999999853       3567888877653332  12222211 11111  235565432         234555


Q ss_pred             EeCCCCccccCeEEcCCCCCCcccccceeE------EEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE
Q 044903          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDA------VGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~------v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      |+.....    ..  .    ..++   |..      +.-.++...+||.+.++..|+....+ +.+-.+ . ...--+++
T Consensus       271 w~~~~~s----~v--e----tlyG---Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg-~-~~sidcv~  334 (479)
T KOG0299|consen  271 WSIDQLS----YV--E----TLYG---HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRG-G-EGSIDCVA  334 (479)
T ss_pred             EehhHhH----HH--H----HHhC---CccceeeechhcccceEEeccccceeEEEeccccc-eeeeeC-C-CCCeeeEE
Confidence            5554433    11  1    1111   211      22235666777777777777763322 111110 1 11234677


Q ss_pred             EeCCeEEEEeCCCCeEEEEeCCCCceEEcccc-----c---cccC--c-eeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903          293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS-----D---LLKG--A-RHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-----~---~~~~--~-~~~~-~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++..-|+.|..+|.|..|+.-+++=.-+...     |   +...  . .+++ ..+..|+..|..++.+-+|-+..+
T Consensus       335 ~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  335 FINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            78888899999999999999866532111111     1   1111  1 2333 345566666655555555555533

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.83  E-value=22  Score=32.70  Aligned_cols=176  Identities=14%  Similarity=0.141  Sum_probs=78.5

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      -++.+++++..        ..++.=.-.=.+|+.+..-.. -........ ++++++++..+.        -....|+..
T Consensus       113 ~~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~G~--------~~~s~~~G~  175 (302)
T PF14870_consen  113 GDGSAELAGDR--------GAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSSRGN--------FYSSWDPGQ  175 (302)
T ss_dssp             ETTEEEEEETT----------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTSS--------EEEEE-TT-
T ss_pred             CCCcEEEEcCC--------CcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEECccc--------EEEEecCCC
Confidence            45556665532        234444445568988643222 122222333 455555554433        334567777


Q ss_pred             CccccCeEEcCCCCCCcccccceeEE-EECCEEEEEeeeCCeEEEEE--CCCCceeeccccc-cCCCCCcEEEEe-CCeE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAV-GWKGKLCLVNVKGAEGAVYD--VVANTWDDMREGM-VRGWRGPVAAMD-EEVL  298 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v-~~~g~lyv~gg~~~~i~~yD--~~~~~W~~~~~~~-~~~~~~~~~~~~-~g~l  298 (387)
                      ..    |.........+.    ..+. .-++.|+++. .+..+..=|  -..++|.+-.... ..++.-..++.. ++.+
T Consensus       176 ~~----w~~~~r~~~~ri----q~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~  246 (302)
T PF14870_consen  176 TT----WQPHNRNSSRRI----QSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI  246 (302)
T ss_dssp             SS-----EEEE--SSS-E----EEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred             cc----ceEEccCcccee----hhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence            77    888764332221    2222 2356777764 444455555  3456888733222 222222233333 4678


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEcccccccc-CceeEEE-eCCeEEEEecCC
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLK-GARHAAA-GGGRVCAVCENG  347 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~-~~~~~~~-~~~~l~v~gg~~  347 (387)
                      |+.|+ ++.+++=.-..++|++........ ..+.++. .+++-+|+|.+|
T Consensus       247 wa~gg-~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  247 WAVGG-SGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             EEEES-TT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             EEEeC-CccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            88876 567777777788999987544333 3334443 457999995443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.65  E-value=30  Score=33.97  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=74.8

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD  294 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~  294 (387)
                      .+.+||...+..  .=+.+.......    ...+..-+|.+++.|+.+..+.++|.++.+-...-..-..+. .....-.
T Consensus       226 tiriwd~~~~~~--~~~~l~gH~~~v----~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i-s~~~f~~  298 (456)
T KOG0266|consen  226 TLRIWDLKDDGR--NLKTLKGHSTYV----TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI-SGLAFSP  298 (456)
T ss_pred             eEEEeeccCCCe--EEEEecCCCCce----EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce-EEEEECC
Confidence            678888844420  023333333222    133334467788888888999999998854332211111110 0111223


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceE---Ecccccccc-CceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWK---EVVKSDLLK-GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~---~v~~~~~~~-~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.+++.+..++.+.+||..+..-.   .+....... -......-+++.++.+..+..+-.||+...
T Consensus       299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            5667777777899999999887632   222222221 122333345565566555667777777743

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=87.46  E-value=14  Score=34.15  Aligned_cols=131  Identities=15%  Similarity=0.061  Sum_probs=72.6

Q ss_pred             CccEEEeCCCC-----ceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCC
Q 044903          164 TRPLIFDPICR-----TWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD  238 (387)
Q Consensus       164 ~~~~vydp~t~-----~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~  238 (387)
                      ..+.+|+....     +.+.+......-.-.+.+.+++++.++.|.          .+.+|+...++   ++...+.+..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~----------~l~v~~l~~~~---~l~~~~~~~~  128 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGN----------KLYVYDLDNSK---TLLKKAFYDS  128 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETT----------EEEEEEEETTS---SEEEEEEE-B
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecC----------EEEEEEccCcc---cchhhheecc
Confidence            56889988885     555554444333445666778887666553          56677766554   2666665543


Q ss_pred             CcccccceeEEEECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEE
Q 044903          239 GRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKY  311 (387)
Q Consensus       239 ~~~~~~~~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~y  311 (387)
                      +...   ....++++.|++-.... -.+..|+.+..+-..+.......+ ..++... ++..++.+...+.+..+
T Consensus       129 ~~~i---~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~-v~~~~~l~d~~~~i~~D~~gnl~~l  199 (321)
T PF03178_consen  129 PFYI---TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW-VTAAEFLVDEDTIIVGDKDGNLFVL  199 (321)
T ss_dssp             SSSE---EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE-EEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred             eEEE---EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc-EEEEEEecCCcEEEEEcCCCeEEEE
Confidence            3322   55667788776543333 445567876666666654322222 2233333 54555555556765544

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=87.36  E-value=28  Score=33.36  Aligned_cols=136  Identities=12%  Similarity=-0.064  Sum_probs=70.1

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      .+++.+|..+++.+++...............+.+|++......      ...++++|..+..    +..+..-....   
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g------~~~iy~~d~~~~~----~~~l~~~~~~~---  324 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG------SPQIYMMDADGGE----VRRLTFRGGYN---  324 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC------CceEEEEECCCCC----EEEeecCCCCc---
Confidence            5789999999888877543321111111122334554433211      2368888988887    77665221111   


Q ss_pred             cceeEEEECCEEEEEeeeC---CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCC
Q 044903          244 EAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVM  315 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~  315 (387)
                       ......-+|+.+++....   ..+..+|+.++.++.+.....  ...+.....++.|++.....+  .+++++.+.
T Consensus       325 -~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       325 -ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL--DESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             -cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC--CCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence             011223356555554433   478999998877776653211  112333334445555543322  355656544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=86.69  E-value=32  Score=33.39  Aligned_cols=136  Identities=15%  Similarity=0.163  Sum_probs=70.9

Q ss_pred             ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEee-eC-CeEEEEECCCCceeeccccccCCCCCcE
Q 044903          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      ..++++|..+++    -..+...+...    ......-+|+ |++... .+ ..++++|+.++.-+.+....... ..++
T Consensus       228 ~~l~~~dl~~g~----~~~l~~~~g~~----~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~  298 (433)
T PRK04922        228 SAIYVQDLATGQ----RELVASFRGIN----GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID-TEPT  298 (433)
T ss_pred             cEEEEEECCCCC----EEEeccCCCCc----cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc-cceE
Confidence            468889998888    66665443211    0122233554 544322 22 57899999888766654321111 1122


Q ss_pred             EEEeCCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC--CceEEEEEecCC
Q 044903          291 AAMDEEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~--~~~i~v~d~~~~  358 (387)
                      ..-.+.+|++.....+  .++.+|.++...+.+...............+..|++..+.  ...++++|..++
T Consensus       299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            2222334555543333  5888898888777764322111122222234455555433  246888888644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=86.60  E-value=32  Score=33.31  Aligned_cols=135  Identities=10%  Similarity=-0.099  Sum_probs=74.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      .+++++|..+++++++...+..-....-...+.+||+......      ...++++|..+++    .+.+..-..  .  
T Consensus       257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g------~~~Iy~~dl~~g~----~~rlt~~g~--~--  322 (419)
T PRK04043        257 PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG------YPNIFMKKLNSGS----VEQVVFHGK--N--  322 (419)
T ss_pred             cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC------CceEEEEECCCCC----eEeCccCCC--c--
Confidence            5789999999999998765431112222233456776654322      2478899999888    766542111  1  


Q ss_pred             cceeEEEECCEEEEEee-e-------C-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--CeEEEEe
Q 044903          244 EAIDAVGWKGKLCLVNV-K-------G-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSKYD  312 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg-~-------~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--~~v~~yd  312 (387)
                        .....-+|+..++.. .       + ..+.++|++++.++.+.....  ...++..-.|..|++.....  ..+..++
T Consensus       323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence              112333554332221 1       1 478889999998888765311  11233333344455554322  2367777


Q ss_pred             CCCC
Q 044903          313 EVMD  316 (387)
Q Consensus       313 ~~~~  316 (387)
                      .+.+
T Consensus       399 l~g~  402 (419)
T PRK04043        399 LNYN  402 (419)
T ss_pred             cCCC
Confidence            7654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=86.54  E-value=22  Score=31.40  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=42.4

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA---MDEEVLYGIDENSCTLSKYDEV  314 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~---~~~g~ly~~g~~~~~v~~yd~~  314 (387)
                      +-.+||.||....++.||..++.=...   ...+..++..+   .-+|.+|..|.++|.|..|...
T Consensus       235 ~k~~fVaGged~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  235 KKEFFVAGGEDFKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             CCceEEecCcceEEEEEeccCCceeee---cccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            346889988888889999887743322   13344445444   3488999999999999998653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=86.49  E-value=19  Score=32.91  Aligned_cols=98  Identities=9%  Similarity=0.092  Sum_probs=54.1

Q ss_pred             eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCe--EEEE-eCCCCeEEEEeCCCCceEEcc
Q 044903          246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV--LYGI-DENSCTLSKYDEVMDDWKEVV  322 (387)
Q Consensus       246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~--ly~~-g~~~~~v~~yd~~~~~W~~v~  322 (387)
                      ..++++++...+-|+.+..|.+||+.++.  ++...+...-...+.......  -.++ +.++|.|.+|+.  +.|..+.
T Consensus        46 itavAVs~~~~aSGssDetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~--~~W~~~~  121 (362)
T KOG0294|consen   46 ITALAVSGPYVASGSSDETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--GSWELLK  121 (362)
T ss_pred             eeEEEecceeEeccCCCCcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc--CCeEEee
Confidence            56788899888888888999999987653  122111111001111111111  0333 346788999997  5798888


Q ss_pred             ccccccCc--eeEEEeCCeEEEEecCC
Q 044903          323 KSDLLKGA--RHAAAGGGRVCAVCENG  347 (387)
Q Consensus       323 ~~~~~~~~--~~~~~~~~~l~v~gg~~  347 (387)
                      ......+.  ...+--.|+|.+--|++
T Consensus       122 slK~H~~~Vt~lsiHPS~KLALsVg~D  148 (362)
T KOG0294|consen  122 SLKAHKGQVTDLSIHPSGKLALSVGGD  148 (362)
T ss_pred             eecccccccceeEecCCCceEEEEcCC
Confidence            76555443  21222245666544443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=86.30  E-value=8.6  Score=35.63  Aligned_cols=104  Identities=11%  Similarity=0.037  Sum_probs=61.6

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEe-CCCCeEEEEeCCCCceEEccccccccCc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGID-ENSCTLSKYDEVMDDWKEVVKSDLLKGA  330 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g-~~~~~v~~yd~~~~~W~~v~~~~~~~~~  330 (387)
                      .+..++.|..+..+-+.|+++++-..--.+.....  ..+++....=|+|. ++++.|.+||++.++-..-- -..+.+-
T Consensus       162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~v--r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V  238 (460)
T KOG0285|consen  162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETV--RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGV  238 (460)
T ss_pred             CceeEEecCCCceeEEEEcccCeEEEeecchhhee--eeeeecccCceEEEecCCCeeEEEechhhhhHHHh-cccccee
Confidence            35666666666788899998887653222122221  23445555566665 46778999999988543310 0112222


Q ss_pred             eeEEEe-CCeEEEEecCCceEEEEEecCC
Q 044903          331 RHAAAG-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       331 ~~~~~~-~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++..+ -..+++.||.+..+-|||+.+.
T Consensus       239 ~~L~lhPTldvl~t~grDst~RvWDiRtr  267 (460)
T KOG0285|consen  239 YCLDLHPTLDVLVTGGRDSTIRVWDIRTR  267 (460)
T ss_pred             EEEeccccceeEEecCCcceEEEeeeccc
Confidence            333333 2567777777888888888855

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.05  E-value=44  Score=34.31  Aligned_cols=165  Identities=13%  Similarity=0.097  Sum_probs=90.5

Q ss_pred             CCccEEEeCCCCceeeCCCCCCCc-eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          163 LTRPLIFDPICRTWTFGPELVTPR-RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       163 ~~~~~vydp~t~~W~~l~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ...+.+||..|..-.+.-.....+ .-......++.+.++-|+.++       .+.+||..++.+.             .
T Consensus        42 ~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG-------sVqif~~~s~~~~-------------~  101 (888)
T KOG0306|consen   42 LEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG-------SVQIFSLESEEIL-------------I  101 (888)
T ss_pred             cccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc-------eEEeeccCCCcee-------------e
Confidence            467888999887433221122223 222334446777777777652       6778877766511             1


Q ss_pred             cccceeEEE----E--CCEEEEEeeeCCeEEEEECCCC--ceeecc--ccccCCCCCcEEEEeCCeEEEEeCCCCeEEEE
Q 044903          242 SREAIDAVG----W--KGKLCLVNVKGAEGAVYDVVAN--TWDDMR--EGMVRGWRGPVAAMDEEVLYGIDENSCTLSKY  311 (387)
Q Consensus       242 ~~~~~~~v~----~--~g~lyv~gg~~~~i~~yD~~~~--~W~~~~--~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~y  311 (387)
                      ...+|.+++    +  .|...+-|+.+..|.+||...+  ..+--.  .....     .....+..+.+-.+.++.|..|
T Consensus       102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~-----~~F~~~~~~lvS~sKDs~iK~W  176 (888)
T KOG0306|consen  102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ-----ALFLNGDSFLVSVSKDSMIKFW  176 (888)
T ss_pred             eecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH-----HhccCCCeEEEEeccCceEEEE
Confidence            111122222    1  3555666777788999987543  222111  00111     1112235555555677889999


Q ss_pred             eCCCCceEEccccccccCc-eeEEEeCCeEEEEecCCceEEEEEe
Q 044903          312 DEVMDDWKEVVKSDLLKGA-RHAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~-~~~~~~~~~l~v~gg~~~~i~v~d~  355 (387)
                      |.++..=.+.  ....++- .+++..+ +++|.++.+..+-||+.
T Consensus       177 dL~tqhCf~T--hvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L  218 (888)
T KOG0306|consen  177 DLETQHCFET--HVDHRGEIWALVLDE-KLLVTAGTDSELKVWEL  218 (888)
T ss_pred             ecccceeeeE--EecccceEEEEEEec-ceEEEEecCCceEEEEe
Confidence            9998754432  2233332 3444444 88888888888888877

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.01  E-value=32  Score=32.62  Aligned_cols=154  Identities=14%  Similarity=0.160  Sum_probs=88.0

Q ss_pred             EeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECC
Q 044903          192 GYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       192 ~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      +..++++|+....     +    .+..+|+.+..+.  |+....-.....   ......-+|+||+-...+ .+++||..
T Consensus        65 ~~~dg~v~~~~~~-----G----~i~A~d~~~g~~~--W~~~~~~~~~~~---~~~~~~~~G~i~~g~~~g-~~y~ld~~  129 (370)
T COG1520          65 ADGDGTVYVGTRD-----G----NIFALNPDTGLVK--WSYPLLGAVAQL---SGPILGSDGKIYVGSWDG-KLYALDAS  129 (370)
T ss_pred             EeeCCeEEEecCC-----C----cEEEEeCCCCcEE--ecccCcCcceec---cCceEEeCCeEEEecccc-eEEEEECC
Confidence            6778899987111     1    6788999998865  865543200011   122333389988765544 78899985


Q ss_pred             C--CceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCC--CceEEccccc-cccCceeEEEeCCeEEEEecC
Q 044903          272 A--NTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVM--DDWKEVVKSD-LLKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       272 ~--~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~--~~W~~v~~~~-~~~~~~~~~~~~~~l~v~gg~  346 (387)
                      +  ..|+.-... . .......++.++.+|+.. .++.++..|.++  ..|+.-...+ ........+..++.+|+-..+
T Consensus       130 ~G~~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~  206 (370)
T COG1520         130 TGTLVWSRNVGG-S-PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG  206 (370)
T ss_pred             CCcEEEEEecCC-C-eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC
Confidence            3  479866554 1 111223345566677664 467888888774  4687544332 222122222556666666332


Q ss_pred             -CceEEEEEecCCCCCceeE
Q 044903          347 -GGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       347 -~~~i~v~d~~~~~~~~~W~  365 (387)
                       +..++.+|+..+  ...|+
T Consensus       207 ~~~~~~a~~~~~G--~~~w~  224 (370)
T COG1520         207 YDGILYALNAEDG--TLKWS  224 (370)
T ss_pred             CcceEEEEEccCC--cEeee
Confidence             346777787632  35677

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.83  E-value=34  Score=32.87  Aligned_cols=109  Identities=10%  Similarity=-0.017  Sum_probs=55.3

Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce-----EEccccc
Q 044903          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDW-----KEVVKSD  325 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W-----~~v~~~~  325 (387)
                      -+|.++++|..+......|.....|+.+......... ......++.+++++ ..|.+..-+.....|     .++....
T Consensus       248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~  325 (398)
T PLN00033        248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKS  325 (398)
T ss_pred             CCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCEEEEe-CCceEEEecCCCCcccccceeecccCC
Confidence            3455666655443333344444459988753333221 12224567888887 456776666555555     4433221


Q ss_pred             cccCceeEE-EeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          326 LLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       326 ~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      .......++ .-++.++++|..| .++.-...    |+.|+.
T Consensus       326 ~~~~l~~v~~~~d~~~~a~G~~G-~v~~s~D~----G~tW~~  362 (398)
T PLN00033        326 RGFGILDVGYRSKKEAWAAGGSG-ILLRSTDG----GKSWKR  362 (398)
T ss_pred             CCcceEEEEEcCCCcEEEEECCC-cEEEeCCC----CcceeE
Confidence            112223333 3467788885444 33333222    357997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.70  E-value=24  Score=30.96  Aligned_cols=121  Identities=10%  Similarity=0.034  Sum_probs=76.9

Q ss_pred             EEECCEEEEEeeeCCeEEEEECCCCc----eeeccccccCCCCCcEEEEeCC-eEEEEeCCCCeEEEEeCCCCceEEccc
Q 044903          249 VGWKGKLCLVNVKGAEGAVYDVVANT----WDDMREGMVRGWRGPVAAMDEE-VLYGIDENSCTLSKYDEVMDDWKEVVK  323 (387)
Q Consensus       249 v~~~g~lyv~gg~~~~i~~yD~~~~~----W~~~~~~~~~~~~~~~~~~~~g-~ly~~g~~~~~v~~yd~~~~~W~~v~~  323 (387)
                      ...|+.-+.-+|.+..++++|..+++    |+.-..   +   -.++...+. .+.+-|+.+..+.+||-..+..+.|+.
T Consensus        67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a---q---VNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA---Q---VNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             ccccccccccCCCCceEEEEEcccCeeeeecccccc---e---eeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence            34566555566666788999998874    332111   0   011222222 244445567789999999998888887


Q ss_pred             cccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCceeeEEE
Q 044903          324 SDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVH  378 (387)
Q Consensus       324 ~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~~~~~~~  378 (387)
                      +...+.....+.+.+...|.|.-++.+-.||+..+   +.-.-.+....++++.+
T Consensus       141 ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G---~l~sDy~g~pit~vs~s  192 (307)
T KOG0316|consen  141 LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG---TLSSDYFGHPITSVSFS  192 (307)
T ss_pred             hhhhcCceeEEEecccEEEeeccCCcEEEEEeecc---eeehhhcCCcceeEEec
Confidence            77777777777778888888777899999999865   33332444444444443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=85.06  E-value=20  Score=32.50  Aligned_cols=64  Identities=13%  Similarity=-0.028  Sum_probs=34.5

Q ss_pred             CEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903          253 GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD  316 (387)
Q Consensus       253 g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~  316 (387)
                      +...+-.|.+..+..+|.++++=...-..-..........-.|-.|.+-+..++++.+||..++
T Consensus       102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen  102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            4444445666789999998886543211000000000011123345555567889999999754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=85.04  E-value=39  Score=32.79  Aligned_cols=21  Identities=14%  Similarity=0.340  Sum_probs=16.9

Q ss_pred             CeEEEEECCCCceeecccccc
Q 044903          263 AEGAVYDVVANTWDDMREGMV  283 (387)
Q Consensus       263 ~~i~~yD~~~~~W~~~~~~~~  283 (387)
                      .+|+.|||++++-+.++.+++
T Consensus       287 GdIylydP~td~lekldI~lp  307 (668)
T COG4946         287 GDIYLYDPETDSLEKLDIGLP  307 (668)
T ss_pred             CcEEEeCCCcCcceeeecCCc
Confidence            678999999999888875543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=84.99  E-value=14  Score=35.22  Aligned_cols=149  Identities=16%  Similarity=0.147  Sum_probs=75.5

Q ss_pred             eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC--EEEEEeeeCCeEE
Q 044903          189 CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG--KLCLVNVKGAEGA  266 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g--~lyv~gg~~~~i~  266 (387)
                      ..++..+++.++.||.+.        .+.++|..|.+      .+..+...+  ..-...+...|  .+|..+ .+..+-
T Consensus       207 ~~avS~Dgkylatgg~d~--------~v~Iw~~~t~e------hv~~~~ghr--~~V~~L~fr~gt~~lys~s-~Drsvk  269 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDR--------HVQIWDCDTLE------HVKVFKGHR--GAVSSLAFRKGTSELYSAS-ADRSVK  269 (479)
T ss_pred             EEEEcCCCcEEEecCCCc--------eEEEecCcccc------hhhcccccc--cceeeeeeecCccceeeee-cCCceE
Confidence            445566888999998866        56788887765      111111111  00022233333  355442 223444


Q ss_pred             EEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc-eeEEEeCCeEEEEec
Q 044903          267 VYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA-RHAAAGGGRVCAVCE  345 (387)
Q Consensus       267 ~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~-~~~~~~~~~l~v~gg  345 (387)
                      +++.+.....+.-.+-..+..+ --+..-+++..+|+.+.++.+|+...+ =+.+.. + ..+. =+++.+++.=||.|.
T Consensus       270 vw~~~~~s~vetlyGHqd~v~~-IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifr-g-~~~sidcv~~In~~HfvsGS  345 (479)
T KOG0299|consen  270 VWSIDQLSYVETLYGHQDGVLG-IDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFR-G-GEGSIDCVAFINDEHFVSGS  345 (479)
T ss_pred             EEehhHhHHHHHHhCCccceee-echhcccceEEeccccceeEEEecccc-ceeeee-C-CCCCeeeEEEecccceeecc
Confidence            4443332222111111111100 111234678888888899999887332 111111 1 1222 345667888888888


Q ss_pred             CCceEEEEEecCC
Q 044903          346 NGGGIVVVDVKAA  358 (387)
Q Consensus       346 ~~~~i~v~d~~~~  358 (387)
                      .++.|..|++.+.
T Consensus       346 dnG~IaLWs~~KK  358 (479)
T KOG0299|consen  346 DNGSIALWSLLKK  358 (479)
T ss_pred             CCceEEEeeeccc
Confidence            8888888887754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=84.95  E-value=17  Score=35.42  Aligned_cols=108  Identities=12%  Similarity=0.134  Sum_probs=61.5

Q ss_pred             EEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE--EeCCeEEEEeCCCCeEEEEeCCCCceEEccccc
Q 044903          248 AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA--MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD  325 (387)
Q Consensus       248 ~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~--~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~  325 (387)
                      ++.-++...++||.+..+++|.+..+.=.+... ....+...+.+  ..++..+..+...+++..||.+++.= .....-
T Consensus       450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~w~  527 (603)
T KOG0318|consen  450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNRWA  527 (603)
T ss_pred             EEcCCCCEEEEecccceEEEEEecCCcccceee-eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecceee
Confidence            333455666677777779999887655333221 11111122222  23555555655678899999987633 212222


Q ss_pred             cccCceeEEEe--CCeEEEEecCCceEEEEEecC
Q 044903          326 LLKGARHAAAG--GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       326 ~~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .+.....++++  +++++..|.-+..|.+|+++.
T Consensus       528 FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  528 FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             eeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence            23333334443  677777766688899999884

>PRK02889 tolB translocation protein TolB; Provisional

Probab=84.74  E-value=40  Score=32.70  Aligned_cols=179  Identities=13%  Similarity=0.028  Sum_probs=82.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|.....-+.+..-...-....-..-+.+|+... ...     ....++++|..+++    =..+...+...   
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s-~~~-----~~~~I~~~dl~~g~----~~~l~~~~g~~---  242 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVS-FES-----KKPVVYVHDLATGR----RRVVANFKGSN---  242 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEE-ccC-----CCcEEEEEECCCCC----EEEeecCCCCc---
Confidence            567888876555454432222111122222233444332 211     12368899998876    44444333111   


Q ss_pred             cceeEEEECC-EEEEEee-eC-CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 044903          244 EAIDAVGWKG-KLCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~~g-~lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W  318 (387)
                       ...+..-|| +|++... .+ ..++.+|...+..+.+..... ....+.-.-.|..|++.....+  .++.+|.++...
T Consensus       243 -~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        243 -SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             -cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence             112222355 4443322 22 578888887776665543111 1112222222334555543233  577778777766


Q ss_pred             EEccccccccCceeEEEeCC-eEEEEecCC--ceEEEEEecCC
Q 044903          319 KEVVKSDLLKGARHAAAGGG-RVCAVCENG--GGIVVVDVKAA  358 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~-~l~v~gg~~--~~i~v~d~~~~  358 (387)
                      +.+.......... ....+| .|+.....+  ..++++|...+
T Consensus       321 ~~lt~~g~~~~~~-~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        321 QRVTFTGSYNTSP-RISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             EEEecCCCCcCce-EECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            6654221111112 223344 444443322  46888887743

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=84.24  E-value=64  Score=34.62  Aligned_cols=180  Identities=12%  Similarity=-0.011  Sum_probs=90.3

Q ss_pred             ccEEEeCCCCceeeCCCCCCCceeeeEEee-----CCE-EEEEecCCCC-CCC--CCCceEEEEeCCCCccccCeEEcC-
Q 044903          165 RPLIFDPICRTWTFGPELVTPRRWCAAGYS-----RGA-VYVASGIGSQ-FSS--DVAKSVEKWDLMNGEKNSRWEKTG-  234 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-----~~~-iyv~GG~~~~-~~~--~~~~~v~vyd~~t~~~~~~W~~~~-  234 (387)
                      .+.++|+.+++=.-+-+++..-..++.+.+     +.. +..+|+.... .+.  -....++.|+...+...  -+-+. 
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~--lellh~  931 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDK--LELLHK  931 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCce--eeeeec
Confidence            456677776654444344433333333322     222 4444443221 111  12234666765544321  22222 


Q ss_pred             -CCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC-eEEEEe
Q 044903          235 -ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-TLSKYD  312 (387)
Q Consensus       235 -~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~-~v~~yd  312 (387)
                       .++.+.     ++.+-+.|  ++..|.+..+.+||+..++=......-.....-..+...+.+|++-+...+ ..++|+
T Consensus       932 T~~~~~v-----~Ai~~f~~--~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen  932 TEIPGPV-----GAICPFQG--RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred             cCCCccc-----eEEeccCC--EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEe
Confidence             222222     45556677  455566778999999776543332211111112234455567776654333 478899


Q ss_pred             CCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEE
Q 044903          313 EVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVV  353 (387)
Q Consensus       313 ~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~  353 (387)
                      ++.+....+...+..|.-.++...+..=++.+..-+++++.
T Consensus      1005 ~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred             cCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEE
Confidence            99998888877776666554554444333333333455554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.47  E-value=31  Score=31.60  Aligned_cols=104  Identities=13%  Similarity=0.034  Sum_probs=66.7

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeec-------cccccCCCCCcEEEEeCCeEEEEeC-------------CCCeEEEE
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDM-------REGMVRGWRGPVAAMDEEVLYGIDE-------------NSCTLSKY  311 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~-------~~~~~~~~~~~~~~~~~g~ly~~g~-------------~~~~v~~y  311 (387)
                      ++.||...-+..+|.+||..   |..+       ++.+|.+..---+...+++|||.--             -.|.|-+|
T Consensus       151 ~~~LYaadF~~g~IDVFd~~---f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvF  227 (336)
T TIGR03118       151 GDYLYAANFRQGRIDVFKGS---FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVF  227 (336)
T ss_pred             CceEEEeccCCCceEEecCc---cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEE
Confidence            46677776556789999754   3322       1234555544456778999999741             12469999


Q ss_pred             eCCCCceEEccccccccCceeE-------EEeCCeEEEEecCCceEEEEEecCC
Q 044903          312 DEVMDDWKEVVKSDLLKGARHA-------AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~-------~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      |+..+.-+++.+-.++-.+..+       -...|.|+|=.-+++.|-++|+.++
T Consensus       228 d~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       228 TLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             cCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence            9998877777654443333222       2346777775556788999998754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.70  E-value=34  Score=30.26  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             EEEEEeeeCCeEEEEECCCCceeeccc-----cccCCCC-CcEEEEeCCeEEEEe-CCCCeEEEE--eCCCCceEEcccc
Q 044903          254 KLCLVNVKGAEGAVYDVVANTWDDMRE-----GMVRGWR-GPVAAMDEEVLYGID-ENSCTLSKY--DEVMDDWKEVVKS  324 (387)
Q Consensus       254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~-----~~~~~~~-~~~~~~~~g~ly~~g-~~~~~v~~y--d~~~~~W~~v~~~  324 (387)
                      +-++-||.++.+.+.+.+.++|..-..     .+..... +|+  +.-.+-++.. +.++.+.+|  +.+.+.|+.-..-
T Consensus       176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~--~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~  253 (299)
T KOG1332|consen  176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS--VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE  253 (299)
T ss_pred             ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc--cCCCceeeEEecCCCcEEEEEecCccCcccccccc
Confidence            345667777777777777779975431     1111111 111  1112333332 356777777  5566789875433


Q ss_pred             ccccCc-eeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          325 DLLKGA-RHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       325 ~~~~~~-~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      +..... ...-.+.|.++.++++++++.++-....   .+|+.
T Consensus       254 ~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~---Gkw~~  293 (299)
T KOG1332|consen  254 EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD---GKWEE  293 (299)
T ss_pred             cCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC---CcEEE
Confidence            322222 2233556778888888888888866533   35875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.30  E-value=35  Score=32.06  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=57.3

Q ss_pred             EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCC---CcccccceeEEEECC--E-EEEEeeeCCeEEEEEC
Q 044903          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD---GRFSREAIDAVGWKG--K-LCLVNVKGAEGAVYDV  270 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~---~~~~~~~~~~v~~~g--~-lyv~gg~~~~i~~yD~  270 (387)
                      .|+.+||..+      .+.+++||++..+..  |+.-...+.   -+.+.....+..+.|  . -++.+-....+-.||+
T Consensus       162 ~Iva~GGke~------~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt  233 (412)
T KOG3881|consen  162 YIVATGGKEN------INELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDT  233 (412)
T ss_pred             ceEecCchhc------ccceeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecC
Confidence            4666688754      457788998887766  875532111   111111133444555  2 2222222267889999


Q ss_pred             CCCceeeccc-cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 044903          271 VANTWDDMRE-GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD  317 (387)
Q Consensus       271 ~~~~W~~~~~-~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~  317 (387)
                      ..++=-...- .+..+....+... ++...+++...+.+..||..+.+
T Consensus       234 ~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  234 RHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             cccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCce
Confidence            8654221110 0111111222223 33444445457889999998774

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=81.84  E-value=47  Score=31.31  Aligned_cols=131  Identities=14%  Similarity=0.072  Sum_probs=72.6

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccc--eeEEEECCEEEEEeeeCCeEEEEECCCCceee--ccc----cccCCC
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREA--IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDD--MRE----GMVRGW  286 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~--~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~--~~~----~~~~~~  286 (387)
                      ++-.+|+.|.++.|+-+.         ....  +.+-.=||+...-|.....|-.|||++++=.-  ++.    .....|
T Consensus       138 TvR~WD~~TeTp~~t~Kg---------H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Law  208 (480)
T KOG0271|consen  138 TVRLWDLDTETPLFTCKG---------HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAW  208 (480)
T ss_pred             eEEeeccCCCCcceeecC---------CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEee
Confidence            678888888873311100         0011  11122366666655555788999988764221  110    000111


Q ss_pred             CCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC-CceEEEEEecC
Q 044903          287 RGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN-GGGIVVVDVKA  357 (387)
Q Consensus       287 ~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~-~~~i~v~d~~~  357 (387)
                      . +...+-+.+.+.-++.+|.+.+||....+  .+..+..+..+..|+.+||.=++..|. +..|-+|+...
T Consensus       209 e-p~hl~p~~r~las~skDg~vrIWd~~~~~--~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d  277 (480)
T KOG0271|consen  209 E-PLHLVPPCRRLASSSKDGSVRIWDTKLGT--CVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD  277 (480)
T ss_pred             c-ccccCCCccceecccCCCCEEEEEccCce--EEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence            1 11112233444445568899999997763  333444555677889999887777654 67788888775

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=81.65  E-value=50  Score=31.52  Aligned_cols=146  Identities=17%  Similarity=0.136  Sum_probs=84.8

Q ss_pred             eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeee--CCeEEEEEC
Q 044903          194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVK--GAEGAVYDV  270 (387)
Q Consensus       194 ~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~--~~~i~~yD~  270 (387)
                      .+.++||..+.        .+.+.++|..+++   ....++ ..  ..+ . ..++. .++.+|+....  ...+.+.|.
T Consensus        84 ~~~~vyv~~~~--------~~~v~vid~~~~~---~~~~~~-vG--~~P-~-~~~~~~~~~~vYV~n~~~~~~~vsvid~  147 (381)
T COG3391          84 AGNKVYVTTGD--------SNTVSVIDTATNT---VLGSIP-VG--LGP-V-GLAVDPDGKYVYVANAGNGNNTVSVIDA  147 (381)
T ss_pred             CCCeEEEecCC--------CCeEEEEcCcccc---eeeEee-ec--cCC-c-eEEECCCCCEEEEEecccCCceEEEEeC
Confidence            46689998654        3478888877766   122222 11  111 1 22233 35589998763  478999999


Q ss_pred             CCCceeec-cccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccc----cccccCceeEE-E-eCCeEEEE
Q 044903          271 VANTWDDM-REGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVK----SDLLKGARHAA-A-GGGRVCAV  343 (387)
Q Consensus       271 ~~~~W~~~-~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~----~~~~~~~~~~~-~-~~~~l~v~  343 (387)
                      .+++=... +.+. .+ .+......++++|+....++.+.++|..+..=.. ..    .+....++..+ . .+.++||.
T Consensus       148 ~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         148 ATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             CCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEE
Confidence            87753322 2111 11 2233334566799998777889999988764443 22    23333333333 2 45568888


Q ss_pred             ecCC--ceEEEEEecCC
Q 044903          344 CENG--GGIVVVDVKAA  358 (387)
Q Consensus       344 gg~~--~~i~v~d~~~~  358 (387)
                      ....  ..+..+|....
T Consensus       225 ~~~~~~~~v~~id~~~~  241 (381)
T COG3391         225 NDGSGSNNVLKIDTATG  241 (381)
T ss_pred             eccCCCceEEEEeCCCc
Confidence            6655  57788877753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=81.37  E-value=41  Score=30.30  Aligned_cols=102  Identities=10%  Similarity=0.048  Sum_probs=59.3

Q ss_pred             EEEEE-eeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCcee
Q 044903          254 KLCLV-NVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH  332 (387)
Q Consensus       254 ~lyv~-gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~  332 (387)
                      ..|++ ++.+..+-+.|+.+.+=...-.+ ..+.-....+..+|.+..-||.+|.+..||+...+=  +...+....-.+
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~s  238 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNS  238 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEee
Confidence            34444 45557778888876654433221 222223344556888999999999999999876532  333333333345


Q ss_pred             EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          333 AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       333 ~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++...++..+..+-+..|-++|...+
T Consensus       239 l~fspnrywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  239 LCFSPNRYWLCAATATSIKIWDLESK  264 (315)
T ss_pred             EEecCCceeEeeccCCceEEEeccch
Confidence            55555555555444555666666543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=81.12  E-value=24  Score=33.70  Aligned_cols=113  Identities=7%  Similarity=-0.006  Sum_probs=62.7

Q ss_pred             eeEEEE-CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEccc
Q 044903          246 IDAVGW-KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVK  323 (387)
Q Consensus       246 ~~~v~~-~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~  323 (387)
                      .+++.. ||-|+..|-.+..+.+||+....  .+...+...-.-.++... +|.-.+.+.+++.|..||+.+.+  .+..
T Consensus       351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt  426 (506)
T KOG0289|consen  351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NFKT  426 (506)
T ss_pred             EEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--ccce
Confidence            334443 56677666555788999998776  343322211111223333 34433444567779999997654  2222


Q ss_pred             cc--cccC-ceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          324 SD--LLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       324 ~~--~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      .+  .... .....-..|..++++|.+-.|+.++-.++    .|+.
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----~W~~  468 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK----SWTE  468 (506)
T ss_pred             eeccccccceeEEEcCCCCeEEeecceeEEEEEecccc----ccee
Confidence            21  1111 22233345777777766777777777766    7985

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=80.75  E-value=50  Score=31.43  Aligned_cols=182  Identities=12%  Similarity=0.071  Sum_probs=91.3

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCC---ceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICR---TWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~---~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~  221 (387)
                      .++.-+|.|+.+       ..+..+|..-|   .|+-+..   ++-...+...+|+-.++-+.+        ..+..|+.
T Consensus       322 pDg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr~---~~v~dlait~Dgk~vl~v~~d--------~~i~l~~~  383 (519)
T KOG0293|consen  322 PDGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVRD---PKVHDLAITYDGKYVLLVTVD--------KKIRLYNR  383 (519)
T ss_pred             cCCceeEecCCC-------CcEEEecCCcchhhccccccc---ceeEEEEEcCCCcEEEEEecc--------cceeeech
Confidence            356666666632       34455555433   5765432   444444445555443333322        25667777


Q ss_pred             CCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccc--cccCCCCCcEEEEeCC--e
Q 044903          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEE--V  297 (387)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g--~  297 (387)
                      ++..    =+.+-....+.    ......-+|++.++.-....+...|.+  .|..+..  +-..+..-...+..|+  +
T Consensus       384 e~~~----dr~lise~~~i----ts~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~  453 (519)
T KOG0293|consen  384 EARV----DRGLISEEQPI----TSFSISKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDK  453 (519)
T ss_pred             hhhh----hhccccccCce----eEEEEcCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcc
Confidence            6655    33222111111    022344578888887777788888887  5554432  2233322222233222  3


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeC---CeEEEEecCCceEEEEEec
Q 044903          298 LYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGG---GRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       298 ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~---~~l~v~gg~~~~i~v~d~~  356 (387)
                      +.+-|.++++|++|+..+.+-..  .++.+...+-+|+++   -.++.-++.++.|-+|-++
T Consensus       454 fiaSGSED~kvyIWhr~sgkll~--~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  454 FIASGSEDSKVYIWHRISGKLLA--VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             eEEecCCCceEEEEEccCCceeE--eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            44455578899999988774333  333333344444442   2344444444555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-10
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-10
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-10
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	7e-06
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	6e-10
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	8e-10
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	4e-07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-04
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	4e-07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	5e-05

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 50/264 (18%)

Query: 105 FDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL----AATTHNFN 160
           +DP ++           P  H              V LV+   ++ +         +  +
Sbjct: 18  YDPAANECYCASLSSQVPKNH--------------VSLVTKENQVFVAGGLFYNEDNKED 63

Query: 161 PALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD 220
           P     L FD +   W   P L +PR     G +  ++YV  G   +       SV  +D
Sbjct: 64  PMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD 123

Query: 221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLV--------NVKGAEGAVYDVVA 272
            ++ +    W ++  L    +       +     + ++         +      VYD   
Sbjct: 124 RLSFK----WGESDPLPYVVYG---HTVLSHMDLVYVIGGKGSDRKCLNKMC--VYDPKK 174

Query: 273 NTWDDMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--KYDEVMDDWKEVVKSDLL 327
             W ++   M        A + +  +    G+ +   T S   Y    + W         
Sbjct: 175 FEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA---F 230

Query: 328 KGARH---AAAGGGRVCAVCENGG 348
              R      +  G + A+   GG
Sbjct: 231 PQERSSLSLVSLVGTLYAI---GG 251

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 47/263 (17%), Positives = 78/263 (29%), Gaps = 52/263 (19%)

Query: 105 FDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL--AATTHNFNPA 162
           ++P + TW  L                        +    + G L  +     + + N  
Sbjct: 44  YNPSNGTWLRLADLQ---------------VPRSGLAGCVVGGLLYAVGGRNNSPDGNTD 88

Query: 163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM 222
            +    ++P+   W+    +  PR     G   G +Y    +G         SVE+++  
Sbjct: 89  SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYA---VGGSHGCIHHNSVERYEPE 145

Query: 223 NGEKNSRWEKTGELKDGRFS------REAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTW 275
             E    W     +   R           + AVG + G   L     AE   Y    N W
Sbjct: 146 RDE----WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL---NSAE--CYYPERNEW 196

Query: 276 DDMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--KYDEVMDDWKEVVKSDLLKGA 330
             +   M     G    +    +Y   G D      S  +YD   + W  V     +K  
Sbjct: 197 RMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP---MKHR 252

Query: 331 RHAAAGGGRVCAVCENGGGIVVV 353
           R A         +  + G I V+
Sbjct: 253 RSA-------LGITVHQGRIYVL 268

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 30/196 (15%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASG-IGSQFSSDVAKSVEKWDLMNGEK 226
            ++P   TW    +L  PR   A     G +Y   G   S   +  + +++ ++ M    
Sbjct: 43  AYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-- 100

Query: 227 NSRWEKTGELKDGR--FSREAID----AV-GWKGKLCLVNVKGAEGAVYDVVANTWDDMR 279
             +W     +   R       ID    AV G  G +   +V   E   Y+   + W  + 
Sbjct: 101 --QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSV---E--RYEPERDEW-HLV 152

Query: 280 EGMVRGWRGPVAAMDEEVLY---GIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAA 334
             M+    G   A+   +LY   G D  +   +   Y    ++W+ +  + +      A 
Sbjct: 153 APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI--TAMNTIRSGAG 210

Query: 335 AG--GGRVCAVCENGG 348
                  + A    GG
Sbjct: 211 VCVLHNCIYAA---GG 223

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 41/254 (16%), Positives = 70/254 (27%), Gaps = 56/254 (22%)

Query: 105 FDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALT 164
           ++P+++ W P  P          +  P    RN  + +  + G +   A    +      
Sbjct: 95  YNPMTNQWSPCAP----------MSVP----RNR-IGVGVIDGHI--YAVGGSHGCIHHN 137

Query: 165 RPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG 224
               ++P    W     ++T R           +Y   G      ++   S E +     
Sbjct: 138 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD---GTNRLNSAECYYPERN 194

Query: 225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLV-------NVKGAEGAVYDVVANTWD- 276
                W     +      R           +           +   E   YDV   TW  
Sbjct: 195 ----EWRMITAM---NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE--RYDVETETWTF 245

Query: 277 --DMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--KYDEVMDDWKEVVKSDLLKG 329
              M+    R   G +       +Y   G D ++   S   YD   D W EV +   +  
Sbjct: 246 VAPMKHR--RSALG-ITVHQGR-IYVLGGYDGHTFLDSVECYDPDTDTWSEVTR---MTS 298

Query: 330 ARHAAAGGGRVCAV 343
            R          AV
Sbjct: 299 GRSGVG-----VAV 307

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 28/263 (10%), Positives = 56/263 (21%), Gaps = 46/263 (17%)

Query: 95  SSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL-- 152
           S+ T  +          W  L   P  P             R+       + G L +   
Sbjct: 28  SAGTAWYKLDTQAKDKKWTALAAFPGGP-------------RDQAT-SAFIDGNLYVFGG 73

Query: 153 -AATTHNFNPALTRPLIFDPICRTWT-FGPELVTPRRWCAAGYSRGAVYVASGIGSQFSS 210
               +            ++P   +W                    G  YV  G+     +
Sbjct: 74  IGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFN 133

Query: 211 DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV 270
                 E  +    +         ++    F +   +   +   L            +D 
Sbjct: 134 G---YFEDLNEAGKD----STAIDKINAHYFDK-KAEDYFFNKFLL----------SFDP 175

Query: 271 VANTWDDMREGMVRGWRGPVAAMDEEVLY--------GIDENSCTLSKYDEVMDDWKEVV 322
               W    E    G  G       +  +        G+  ++     +      W ++ 
Sbjct: 176 STQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA 235

Query: 323 KSDLLKGARHAAAG--GGRVCAV 343
                 G     AG     +   
Sbjct: 236 PVSSPDGVAGGFAGISNDSLIFA 258

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 37/276 (13%), Positives = 76/276 (27%), Gaps = 59/276 (21%)

Query: 105 FDPVSSTWDPLPPPPPDP-----------PLHLI--LHHPSFLS--------RNLPVQLV 143
           ++P +++W  L    P               ++   ++   F                + 
Sbjct: 91  YNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID 150

Query: 144 SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL-VTPRRWCAAGYSRGAVYVAS 202
            ++       A  + FN  L   L FDP  + W++  E         A        ++ +
Sbjct: 151 KINAHYFDKKAEDYFFNKFL---LSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLIN 207

Query: 203 GIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG 262
           G     +    ++   ++L     N +W K   +           A      L      G
Sbjct: 208 G----EAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-GVAGGFAGISNDSLIFAGGAG 262

Query: 263 AEGA----------------------VYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY- 299
            +G+                      ++      WD   E + +G    V+      L  
Sbjct: 263 FKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE-LSQGRAYGVSLPWNNSLLI 321

Query: 300 --GIDENSCTLSK-YDEVMDDWKEVVKSDLLKGARH 332
             G       ++      + D K  V++  L+   H
Sbjct: 322 IGGETAGGKAVTDSVLITVKDNKVTVQN--LEHHHH 355

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 29/159 (18%), Positives = 47/159 (29%), Gaps = 26/159 (16%)

Query: 180 PELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG 239
           PE   P +          VY+  G           +  K D     K+ +W        G
Sbjct: 4   PETPVPFKSGTGAIDNDTVYIGLGSAGT-------AWYKLDTQA--KDKKWTALAAFPGG 54

Query: 240 RFSREAIDAVGWKGKLCLV--NVKGAEGA--------VYDVVANTWDDMREGMVRGWRGP 289
              R+   +    G L +     K +EG          Y+   N+W  +      G  G 
Sbjct: 55  P--RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH 112

Query: 290 VAAMDEEVLY---GIDENSC--TLSKYDEVMDDWKEVVK 323
           V  +     Y   G+++N         +E   D   + K
Sbjct: 113 VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK 151

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 44/265 (16%), Positives = 82/265 (30%), Gaps = 53/265 (20%)

Query: 105 FDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL----AATTHNFN 160
           +DP+ +           P      +H S         +V+   ++ ++        +   
Sbjct: 29  YDPMENECYLTALAEQIP-----RNHSS---------IVTQQNQVYVVGGLYVDEENKDQ 74

Query: 161 PALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD 220
           P  +     D +   W   P L + R     G     +YV +G   Q +     SV  +D
Sbjct: 75  PLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ-TEASLDSVLCYD 133

Query: 221 LMNGEKNSRWEKTGELKDGRFS------REAIDAVG--WKGKLCLVNVKGAEGAVYDVVA 272
            +  +    W +   L    +          I  +G     K C   V      +Y+   
Sbjct: 134 PVAAK----WSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV---F--IYNPKK 184

Query: 273 NTWDDMRE-GMVRGWRGPVAAMDEEVLY---GIDENSCTLS--KYDEVMDDWKEVVKSDL 326
             W D+      R   G VA      +    G+ E+  + S   +D   + W+ + +   
Sbjct: 185 GDWKDLAPMKTPRSMFG-VAIHK-GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE--- 239

Query: 327 LKGARH---AAAGGGRVCAVCENGG 348
               R      +  G + A+   GG
Sbjct: 240 FPQERSSISLVSLAGSLYAI---GG 261

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 44/265 (16%), Positives = 76/265 (28%), Gaps = 58/265 (21%)

Query: 85  LYAL----FSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPV 140
           +Y +       ++       + F  D VSS W  LPP          L       R L  
Sbjct: 59  VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP----------LPSA----RCL-F 103

Query: 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYV 200
            L  +  K+ ++A        +L   L +DP+   W+    L             G +Y 
Sbjct: 104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163

Query: 201 ASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS------REAIDAV-GWKG 253
             G            V  ++   G     W+    +K  R        +  I    G   
Sbjct: 164 LGGKTD--DKKCTNRVFIYNPKKG----DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTE 217

Query: 254 KLCLVNVKGAEGAVYDVVANTWD---DMREGMVRGWRGPVAAMDEEVLY---GIDENSCT 307
                +V   E   +D+  N W+   +  +   R     + ++    LY   G       
Sbjct: 218 DGLSASV---E--AFDLKTNKWEVMTEFPQE--RSSIS-LVSLAGS-LYAIGGFAMIQLE 268

Query: 308 LS-----------KYDEVMDDWKEV 321
                        KY++   +W  +
Sbjct: 269 SKEFAPTEVNDIWKYEDDKKEWAGM 293

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 42/195 (21%), Positives = 61/195 (31%), Gaps = 29/195 (14%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            +DP  + W+F P +   RR+ A+      +YV   IG         SVE  D    E  
Sbjct: 35  KYDPKTQEWSFLPSITRKRRYVASVSLHDRIYV---IGGYDGRSRLSSVECLDYTADEDG 91

Query: 228 SRWEKTGELKDGR--FSREAID----AV-GWKGKLCLVNVKGAEGAVYDVVANTWDDMRE 280
             W     +   R       +        G+ G     ++   E   YD   + W  M  
Sbjct: 92  -VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSM---E--RYDPNIDQW-SMLG 144

Query: 281 GMVRGWRGPVAAMDEEVLY---GIDENSCTLS--KYDEVMDDWKEVVKSDLLKGARHAAA 335
            M     G    +   V+Y   G D  +   S  KYD     W  V  + +      A  
Sbjct: 145 DMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPMATKRSGAGV 202

Query: 336 G--GGRVCAVCENGG 348
                 +  V   GG
Sbjct: 203 ALLNDHIYVV---GG 214

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 49/262 (18%), Positives = 78/262 (29%), Gaps = 54/262 (20%)

Query: 105 FDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALT 164
           +DP +  W  LP                   +   V  VSL  +  +     ++    L+
Sbjct: 36  YDPKTQEWSFLPSIT---------------RKRRYVASVSLHDR--IYVIGGYDGRSRLS 78

Query: 165 RPLIFDPI---CRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL 221
                D        W     +   R    A      +YV    G    S    S+E++D 
Sbjct: 79  SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV---SGGFDGSRRHTSMERYDP 135

Query: 222 MNGEKNSRWEKTGELKDGRFS------REAIDAVG-WKGKLCLVNVKGAEGAVYDVVANT 274
              +    W   G+++  R           I  +G + G   L      E   YD     
Sbjct: 136 NIDQ----WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNIL---NSVE--KYDPHTGH 186

Query: 275 WDDMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--KYDEVMDDWKEVVKSDLLKG 329
           W ++   M     G   A+  + +Y   G D  +   S   Y+   D W  V     +  
Sbjct: 187 WTNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS---MTT 242

Query: 330 ARH---AAAGGGRVCAVCENGG 348
            R    A    GR+ A+    G
Sbjct: 243 PRCYVGATVLRGRLYAI---AG 261

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 19/114 (16%)

Query: 169 FDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS 228
           +DP    WT    + T R           +YV  G      +    SVE +++       
Sbjct: 180 YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFD---GTAHLSSVEAYNIRTDS--- 233

Query: 229 RWEKTGELKDGRFSREAIDAVGWKGKLCLV-------NVKGAEGAVYDVVANTW 275
            W     +   R     + A   +G+L  +        +   E   YD + ++W
Sbjct: 234 -WTTVTSMTTPRCY---VGATVLRGRLYAIAGYDGNSLLSSIE--CYDPIIDSW 281

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            ++    +WT    + TPR +  A   RG +Y  +G           S+E +D +     
Sbjct: 226 AYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS---SIECYDPIIDS-- 280

Query: 228 SRWEKTGELKDGRFS 242
             WE    +   R  
Sbjct: 281 --WEVVTSMGTQRCD 293

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 34/197 (17%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            +D     W    EL + R      Y  G V+   G           +V+ +D +     
Sbjct: 34  CYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVR---TVDSYDPVKD--- 87

Query: 228 SRWEKTGELKDGR--FSREAID----AV-GWKGKLCLVNVKGAEGAVYDVVANTWDDMRE 280
            +W     ++D R       ++    AV G+ G   L +V   E   Y++ +N W     
Sbjct: 88  -QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSV---E--AYNIKSNEW-FHVA 140

Query: 281 GMVRGWRGPVAAMDEEVLY---GIDENSCTLSK----YDEVMDDWKEVVKSDLLKGARHA 333
            M          +   +LY   G D  S         Y+   ++W  +  +++      A
Sbjct: 141 PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI--AEMSTRRSGA 198

Query: 334 AAG--GGRVCAVCENGG 348
             G     + AV   GG
Sbjct: 199 GVGVLNNLLYAV---GG 212

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 20/134 (14%)

Query: 169 FDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS 228
           ++     WT+  E+ T R     G     +Y   G        V KSVE +D        
Sbjct: 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD---GPLVRKSVEVYDPTTNA--- 231

Query: 229 RWEKTGELKDGRFSREAIDAVGWKGKLCLV-------NVKGAEGAVYDVVANTWDDMREG 281
            W +  ++      R         G L +V       N+   E   Y+   + W  +   
Sbjct: 232 -WRQVADMN---MCRRNAGVCAVNGLLYVVGGDDGSCNLASVE--YYNPTTDKWTVVSSC 285

Query: 282 MVRGWRGP-VAAMD 294
           M  G     V  +D
Sbjct: 286 MSTGRSYAGVTVID 299

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 28/171 (16%), Positives = 49/171 (28%), Gaps = 31/171 (18%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            F+P   +WT        RR  A  +    VY+  G            ++ ++++     
Sbjct: 28  YFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIK----RMDCYNVVKD--- 80

Query: 228 SRWEKTGELKDGR--FSREAID----AVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMR 279
             W         R   +  A +      G    G   L      E   YD    +W   +
Sbjct: 81  -SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLF---E--CYDTRTESW-HTK 133

Query: 280 EGMVRGWRGPVAAMDEEVLY---GIDENSCTLSK------YDEVMDDWKEV 321
             M+             ++Y   G   N+ +         YD   + W E+
Sbjct: 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL 184

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 29/151 (19%)

Query: 105 FDPVSSTWDPLPPPPPDPPLHLILHHP-SFLSRNLPVQLVSLSGKLILLAATTHNFNPAL 163
           +DP + TW  L P          +              LV +  K+   A    N    L
Sbjct: 174 YDPATETWTELCP----------MIEARKNHG------LVFVKDKI--FAVGGQNGLGGL 215

Query: 164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN 223
                +D     W     +               VYV +G            + +++   
Sbjct: 216 DNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQ---GVGRLGHILEYNTET 272

Query: 224 GEKNSRWEKTGELKDGRFSREA---IDAVGW 251
            +    W    +++    +      +D  G 
Sbjct: 273 DK----WVANSKVRAFPVTSCLICVVDTCGA 299

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 9   SSKRQKLTQTLTTQPQAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHN--- 65
           S + Q          + +   +A++++  +    L  LP+ +    L+ +  + L     
Sbjct: 17  SPEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACR 76

Query: 66  -VCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTF 105
            VC  W+ L+                P+ ++     H   F
Sbjct: 77  LVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQF 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.22
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.21
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.1
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.81
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.55
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.54
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.47
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.27
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.24
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.24
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.22
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.09
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.09
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.03
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.02
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.01
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.01
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.01
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.97
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.93
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.81
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.77
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.76
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.76
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.7
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.67
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.66
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.64
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.61
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.6
3jro_A	753	Fusion protein of protein transport protein SEC13	97.59
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.52
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.52
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.51
2pm7_B	297	Protein transport protein SEC13, protein transport	97.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.49
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.48
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.48
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.48
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.46
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.43
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.41
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.4
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.4
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.37
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.35
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.35
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.35
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.33
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.33
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.32
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.31
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.28
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.27
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.25
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.25
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.24
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.24
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.23
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.23
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.22
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.21
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.2
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.2
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.19
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.18
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.18
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.17
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.12
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.11
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.1
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.1
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.08
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.08
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.08
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.08
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.05
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.04
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.04
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.04
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.03
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.02
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.01
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.99
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.99
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.96
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.91
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.91
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.9
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.86
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.83
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.81
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.8
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.79
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.79
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.76
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.75
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.74
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.74
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.73
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.73
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.71
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.66
3jro_A	753	Fusion protein of protein transport protein SEC13	96.66
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.66
2pm7_B	297	Protein transport protein SEC13, protein transport	96.65
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.65
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.65
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.63
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.59
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.58
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.57
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.55
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.54
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.54
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.53
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.5
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.49
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.49
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.43
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.42
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.42
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.41
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.37
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.34
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.3
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.23
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.22
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.2
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.19
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.14
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.1
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.1
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.01
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.01
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	95.99
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.94
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	95.92
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	95.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.88
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.85
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.81
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.8
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.79
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.74
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.71
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.71
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.7
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.64
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	95.62
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.57
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.48
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.41
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.41
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.4
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.39
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.32
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.31
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	95.25
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.22
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.1
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	94.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.92
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.91
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	94.9
3ott_A	758	Two-component system sensor histidine kinase; beta	94.86
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	94.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.45
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	94.43
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.26
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	94.21
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	94.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.16
3ott_A	758	Two-component system sensor histidine kinase; beta	94.12
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.08
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	93.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	93.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.83
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	93.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	93.63
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.63
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	93.5
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	93.44
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	93.36
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	93.32
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	92.99
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	92.93
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	92.82
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	92.62
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	92.6
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	91.97
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	91.78
2qe8_A	343	Uncharacterized protein; structural genomics, join	91.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	91.05
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	90.79
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	90.56
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	90.24
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	90.18
1k32_A	1045	Tricorn protease; protein degradation, substrate g	90.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	89.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	89.72
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	89.41
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	89.22
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	89.16
3kya_A	496	Putative phosphatase; structural genomics, joint c	88.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.51
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.98
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	87.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	87.26
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	87.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	86.7
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	86.44
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	85.22
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	84.96
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	84.15
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	84.08
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	83.99
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	83.98
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	83.57
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	83.2
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	82.36
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	82.26
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	82.11
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	81.67
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	81.35
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	80.93

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.2e-36  Score=275.31  Aligned_cols=248  Identities=16%  Similarity=0.282  Sum_probs=212.2

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|++++.   .......+++||+.+++|..++++|..               +.++++++.+++||++||...  ....
T Consensus        17 ~i~v~GG~---~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~lyv~GG~~~--~~~~   76 (302)
T 2xn4_A           17 LMVVVGGQ---APKAIRSVECYDFKEERWHQVAELPSR---------------RCRAGMVYMAGLVFAVGGFNG--SLRV   76 (302)
T ss_dssp             EEEEECCB---SSSBCCCEEEEETTTTEEEEECCCSSC---------------CBSCEEEEETTEEEEESCBCS--SSBC
T ss_pred             EEEEECCC---CCCCCCcEEEEcCcCCcEeEcccCCcc---------------cccceEEEECCEEEEEeCcCC--Cccc
Confidence            47888763   122334589999999999999887752               456788889999999999765  3456


Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      +++++||+.+++|+++++||.+|..++++.++++|||+||...   ....+++++||+.+++    |+.++++|.++.  
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~d~~~~~----W~~~~~~p~~r~--  147 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNE----WFHVAPMNTRRS--  147 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECS---SCEEEEEEEEETTTTE----EEEECCCSSCCB--
T ss_pred             cceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCC---CccCceEEEEeCCCCe----EeecCCCCCccc--
Confidence            8899999999999999999999999999999999999999865   3456789999999999    999999997764  


Q ss_pred             cceeEEEECCEEEEEeeeC-------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC-----CeEEEE
Q 044903          244 EAIDAVGWKGKLCLVNVKG-------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSKY  311 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg~~-------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~-----~~v~~y  311 (387)
                       .+.+++++++||++||..       ..+++||+.+++|+.++. ++..+..+++++.+++||++||.+     .++++|
T Consensus       148 -~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y  225 (302)
T 2xn4_A          148 -SVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVY  225 (302)
T ss_dssp             -SCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEE
T ss_pred             -CceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEE
Confidence             488899999999999874       579999999999999976 566777888899999999999853     469999


Q ss_pred             eCCCCceEEccccccccCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903          312 DEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~  366 (387)
                      |+++++|+.+..+|..+..++++.++++|||+||.+     ..+++||+.+.    .|+.
T Consensus       226 d~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~----~W~~  281 (302)
T 2xn4_A          226 DPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD----KWTV  281 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT----EEEE
T ss_pred             eCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC----eEEE
Confidence            999999999998888888888999999999998853     46999999976    8996

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=274.03  Aligned_cols=246  Identities=18%  Similarity=0.265  Sum_probs=213.2

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|.+++.     +....+++||+.+++|..++++|..               |.++++++++++||++||..   ....
T Consensus        13 ~l~~~GG~-----~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~lyv~GG~~---~~~~   69 (306)
T 3ii7_A           13 YRIALFGG-----SQPQSCRYFNPKDYSWTDIRCPFEK---------------RRDAACVFWDNVVYILGGSQ---LFPI   69 (306)
T ss_dssp             EEEEEECC-----SSTTSEEEEETTTTEEEECCCCSCC---------------CBSCEEEEETTEEEEECCBS---SSBC
T ss_pred             eEEEEeCC-----CCCceEEEecCCCCCEecCCCCCcc---------------cceeEEEEECCEEEEEeCCC---CCCc
Confidence            47888763     2255699999999999999887762               55688999999999999975   3467


Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      +++++||+.+++|++++++|.+|..++++.++++|||+||...  .....+.+++||+.+++    |+.++++|.++.  
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~--  141 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV--GNSALYLFECYDTRTES----WHTKPSMLTQRC--  141 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBT--TBSCCCCEEEEETTTTE----EEEECCCSSCCB--
T ss_pred             ceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCC--CCcEeeeEEEEeCCCCc----eEeCCCCcCCcc--
Confidence            8899999999999999999999999999999999999999863  24567899999999999    999999997764  


Q ss_pred             cceeEEEECCEEEEEeeeC---------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC-----CeEE
Q 044903          244 EAIDAVGWKGKLCLVNVKG---------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLS  309 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg~~---------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~-----~~v~  309 (387)
                       .+.+++++++||++||..         ..+++||+++++|+.++. ++..+..+++++.+++||++||..     ..++
T Consensus       142 -~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~  219 (306)
T 3ii7_A          142 -SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE  219 (306)
T ss_dssp             -SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEE
T ss_pred             -eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEE
Confidence             488999999999999863         569999999999999986 667777888999999999999843     4699


Q ss_pred             EEeCCCCceEEccccccccCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903          310 KYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       310 ~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~  366 (387)
                      +||+++++|+.+..+|..+..++++.++++|||+||.+     ..+++||+.+.    .|+.
T Consensus       220 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~----~W~~  277 (306)
T 3ii7_A          220 YYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD----KWVA  277 (306)
T ss_dssp             EEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT----EEEE
T ss_pred             EeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC----eEEe
Confidence            99999999999998888888888999999999999842     67999999976    8996

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=6.6e-36  Score=276.06  Aligned_cols=254  Identities=15%  Similarity=0.224  Sum_probs=214.5

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccC--CCCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTH--NFNP  161 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~  161 (387)
                      .+|++++.   .......+++||+.+++|..++++|..               |.++++++.++.||++||...  ....
T Consensus        26 ~i~v~GG~---~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~lyv~GG~~~~~~~~~   87 (308)
T 1zgk_A           26 LIYTAGGY---FRQSLSYLEAYNPSNGTWLRLADLQVP---------------RSGLAGCVVGGLLYAVGGRNNSPDGNT   87 (308)
T ss_dssp             CEEEECCB---SSSBCCCEEEEETTTTEEEECCCCSSC---------------CBSCEEEEETTEEEEECCEEEETTEEE
T ss_pred             EEEEEeCc---CCCCcceEEEEcCCCCeEeECCCCCcc---------------cccceEEEECCEEEEECCCcCCCCCCe
Confidence            47888873   123344589999999999999887752               556888889999999999731  1133


Q ss_pred             CCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       162 ~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+++++||+.+++|+++++||.+|..++++.++++|||+||...   ....+.+++||+.+++    |+.++++|.++.
T Consensus        88 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~yd~~~~~----W~~~~~~p~~r~  160 (308)
T 1zgk_A           88 DSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDE----WHLVAPMLTRRI  160 (308)
T ss_dssp             ECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTE----EEECCCCSSCCB
T ss_pred             ecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCC---CcccccEEEECCCCCe----EeECCCCCcccc
Confidence            567899999999999999999999999999999999999999865   3456789999999999    999999997764


Q ss_pred             cccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC-----CeEEEE
Q 044903          242 SREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSKY  311 (387)
Q Consensus       242 ~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~-----~~v~~y  311 (387)
                         .+.+++++++||++||..     ..+++||+.+++|+.++. ++..+..+++++.+++||++||..     .++++|
T Consensus       161 ---~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          161 ---GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             ---SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEE
T ss_pred             ---ceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC-CCCccccceEEEECCEEEEEeCCCCCCccceEEEE
Confidence               488999999999999975     679999999999999986 666777888889999999999853     569999


Q ss_pred             eCCCCceEEccccccccCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE--cCCC
Q 044903          312 DEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV--DTPL  370 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~--~~~~  370 (387)
                      |+++++|+.+..+|..+..++++.++++|||+||.+     ..+++||+.+.    .|+.  .+|.
T Consensus       237 d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~  298 (308)
T 1zgk_A          237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD----TWSEVTRMTS  298 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT----EEEEEEECSS
T ss_pred             eCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC----EEeecCCCCC
Confidence            999999999998888888888999999999998842     57899999976    8996  4543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=271.70  Aligned_cols=249  Identities=18%  Similarity=0.251  Sum_probs=212.3

Q ss_pred             eEEEeec-CCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCC
Q 044903           84 SLYALFS-PKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPA  162 (387)
Q Consensus        84 ~l~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~  162 (387)
                      .+|++++ ..  .......+++||+.+++|..++++|..               +.++++++.+++||++||...  ...
T Consensus        16 ~i~~~GG~~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~l~v~GG~~~--~~~   76 (301)
T 2vpj_A           16 VLLVVGGFGS--QQSPIDVVEKYDPKTQEWSFLPSITRK---------------RRYVASVSLHDRIYVIGGYDG--RSR   76 (301)
T ss_dssp             EEEEECCEET--TTEECCCEEEEETTTTEEEECCCCSSC---------------CBSCEEEEETTEEEEECCBCS--SCB
T ss_pred             EEEEEeCccC--CCcceeEEEEEcCCCCeEEeCCCCChh---------------hccccEEEECCEEEEEcCCCC--Ccc
Confidence            4777776 31  112334589999999999999987752               456888899999999999764  456


Q ss_pred             CCccEEEeCCCCc---eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          163 LTRPLIFDPICRT---WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       163 ~~~~~vydp~t~~---W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      .+++++||+.+++   |++++++|.+|..++++.++++|||+||...   ....+++++||+.+++    |+.++++|.+
T Consensus        77 ~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~---~~~~~~~~~~d~~~~~----W~~~~~~p~~  149 (301)
T 2vpj_A           77 LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQ----WSMLGDMQTA  149 (301)
T ss_dssp             CCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCS---SCBCCEEEEEETTTTE----EEEEEECSSC
T ss_pred             CceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCC---CcccceEEEEcCCCCe----EEECCCCCCC
Confidence            7889999999999   9999999999999999999999999999865   3457899999999999    9999999876


Q ss_pred             cccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC-----CeEE
Q 044903          240 RFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLS  309 (387)
Q Consensus       240 ~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~-----~~v~  309 (387)
                      +.   .+.+++++++||++||..     ..+++||+.+++|+.++. ++..+..+++++.+++||++||.+     .+++
T Consensus       150 r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~  225 (301)
T 2vpj_A          150 RE---GAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVE  225 (301)
T ss_dssp             CB---SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEE
T ss_pred             cc---cceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC-CCcccccceEEEECCEEEEEeCCCCCcccceEE
Confidence            64   488899999999999975     789999999999999976 566777888899999999999853     4699


Q ss_pred             EEeCCCCceEEccccccccCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE
Q 044903          310 KYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       310 ~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~  366 (387)
                      +||+++++|+.+..+|..+..++++.++++|||+||.+     ..+++||+.+.    .|+.
T Consensus       226 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~----~W~~  283 (301)
T 2vpj_A          226 AYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID----SWEV  283 (301)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT----EEEE
T ss_pred             EEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC----eEEE
Confidence            99999999999998888888888999999999998853     57899999976    8996

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=271.05  Aligned_cols=242  Identities=15%  Similarity=0.157  Sum_probs=203.0

Q ss_pred             eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccC----CCCCCCCccEEEeCCCCc
Q 044903          100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTH----NFNPALTRPLIFDPICRT  175 (387)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~----~~~~~~~~~~vydp~t~~  175 (387)
                      ..+++|||.+++|.. +++|. |            .+|.++++++.+++||++||...    ......+++++||+.+++
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~-p------------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   78 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSS-Q------------VPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE   78 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCC-C------------SCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred             CceEEECCCCCeEec-CCCCC-C------------CCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence            368999999999986 55553 1            12566888889999999999631    112233458999999999


Q ss_pred             eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEE
Q 044903          176 WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKL  255 (387)
Q Consensus       176 W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~l  255 (387)
                      |+++++||.+|..++++.++++|||+||..........+++++||+.+++    |+.++++|.++.   .+++++++++|
T Consensus        79 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~---~~~~~~~~~~i  151 (315)
T 4asc_A           79 WLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK----WGESDPLPYVVY---GHTVLSHMDLV  151 (315)
T ss_dssp             EEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE----EEECCCCSSCCB---SCEEEEETTEE
T ss_pred             EEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc----EeECCCCCCccc---ceeEEEECCEE
Confidence            99999999999999999999999999997532124567899999999999    999999997764   48899999999


Q ss_pred             EEEeeeC------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCC-----eEEEEeCCCCceEEcccc
Q 044903          256 CLVNVKG------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-----TLSKYDEVMDDWKEVVKS  324 (387)
Q Consensus       256 yv~gg~~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~-----~v~~yd~~~~~W~~v~~~  324 (387)
                      |++||..      .++++||+.+++|+.++. ++.++..+++++.+++||++||..+     .+++||+++++|+.+..+
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  230 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF  230 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence            9999983      789999999999999986 6677778888999999999998542     599999999999999988


Q ss_pred             ccccCceeEEEeCCeEEEEecCC--------------ceEEEEEecCCCCCceeEEc
Q 044903          325 DLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       325 ~~~~~~~~~~~~~~~l~v~gg~~--------------~~i~v~d~~~~~~~~~W~~~  367 (387)
                      |..+..++++.++++|||+||..              ..+++||+.+.    .|+..
T Consensus       231 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~~  283 (315)
T 4asc_A          231 PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK----KWEGV  283 (315)
T ss_dssp             SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT----EEEEE
T ss_pred             CCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC----hhhhh
Confidence            88888888999999999999852              35899999976    89973

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=5.1e-34  Score=264.57  Aligned_cols=241  Identities=13%  Similarity=0.178  Sum_probs=199.3

Q ss_pred             EEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC----CCCCCccEEEeCCCCce
Q 044903          101 HLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF----NPALTRPLIFDPICRTW  176 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~----~~~~~~~~vydp~t~~W  176 (387)
                      .+++|||.+++|.. ++++..             .+|.+++++..++.||++||.....    ....+++++||+.+++|
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~-------------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   90 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQ-------------IPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW   90 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTT-------------SCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred             ceEEECCCCCceec-ccCCcc-------------CCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence            37899999999988 334421             1255678888999999999953211    11234489999999999


Q ss_pred             eeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEE
Q 044903          177 TFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLC  256 (387)
Q Consensus       177 ~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~ly  256 (387)
                      +++++||.+|..+++++++++|||+||.... .....+++++||+.+++    |+.++++|.++.   .+++++++++||
T Consensus        91 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iy  162 (318)
T 2woz_A           91 VGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ-TEASLDSVLCYDPVAAK----WSEVKNLPIKVY---GHNVISHNGMIY  162 (318)
T ss_dssp             EECSCBSSCBCSCEEEEETTEEEEEEEEBTT-TCCEEEEEEEEETTTTE----EEEECCCSSCEE---SCEEEEETTEEE
T ss_pred             EECCCCCccccccceEEECCEEEEEcCccCC-CCcccceEEEEeCCCCC----EeECCCCCCccc---ccEEEEECCEEE
Confidence            9999999999999999999999999998531 13457789999999999    999999997764   488899999999


Q ss_pred             EEeeeC------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCceEEccccc
Q 044903          257 LVNVKG------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSKYDEVMDDWKEVVKSD  325 (387)
Q Consensus       257 v~gg~~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~-----~~v~~yd~~~~~W~~v~~~~  325 (387)
                      ++||..      .++++||+.+++|+.++. ++..+..+++++.+++||++||..     ..+++||+++++|+.+..+|
T Consensus       163 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  241 (318)
T 2woz_A          163 CLGGKTDDKKCTNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP  241 (318)
T ss_dssp             EECCEESSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS
T ss_pred             EEcCCCCCCCccceEEEEcCCCCEEEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC
Confidence            999973      679999999999999986 566677788889999999999743     35899999999999999888


Q ss_pred             cccCceeEEEeCCeEEEEecCC--------------ceEEEEEecCCCCCceeEEcC
Q 044903          326 LLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVVDT  368 (387)
Q Consensus       326 ~~~~~~~~~~~~~~l~v~gg~~--------------~~i~v~d~~~~~~~~~W~~~~  368 (387)
                      ..+..++++.++++|||+||.+              ..+++||+.+.    .|+..+
T Consensus       242 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~~~  294 (318)
T 2woz_A          242 QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK----EWAGML  294 (318)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT----EEEEEE
T ss_pred             CcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC----Eehhhc
Confidence            8888888999999999998842              46899999976    899743

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3.7e-33  Score=258.42  Aligned_cols=218  Identities=17%  Similarity=0.236  Sum_probs=186.9

Q ss_pred             EEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccC-CCCCCCCccEEEeCCCCceeeC
Q 044903          101 HLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTH-NFNPALTRPLIFDPICRTWTFG  179 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~vydp~t~~W~~l  179 (387)
                      .+++||+.+++|..++++|..               |.++++++++++||++||... ......+++++||+.+++|+++
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~  132 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSP---------------RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES  132 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSC---------------EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC
T ss_pred             ceEEecCCCCeEEECCCCCcc---------------hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC
Confidence            389999999999999988752               556888999999999999753 2245678899999999999999


Q ss_pred             CCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEe
Q 044903          180 PELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVN  259 (387)
Q Consensus       180 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~g  259 (387)
                      +++|.+|..++++.++++|||+||...  .....+++++||+.+++    |+.++++|.++.   .+.+++++++||++|
T Consensus       133 ~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~G  203 (315)
T 4asc_A          133 DPLPYVVYGHTVLSHMDLVYVIGGKGS--DRKCLNKMCVYDPKKFE----WKELAPMQTARS---LFGATVHDGRIIVAA  203 (315)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCT--TSCBCCCEEEEETTTTE----EEECCCCSSCCB---SCEEEEETTEEEEEE
T ss_pred             CCCCCcccceeEEEECCEEEEEeCCCC--CCcccceEEEEeCCCCe----EEECCCCCCchh---ceEEEEECCEEEEEe
Confidence            999999999999999999999999854  24567899999999999    999999997764   488999999999999


Q ss_pred             eeC-----CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC--------------CeEEEEeCCCCceEE
Q 044903          260 VKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------------CTLSKYDEVMDDWKE  320 (387)
Q Consensus       260 g~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~--------------~~v~~yd~~~~~W~~  320 (387)
                      |..     ..+++||+++++|+.++. ++..+..+++++.+++||++||..              .++++||+++++|+.
T Consensus       204 G~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          204 GVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EECSSSEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             ccCCCCccceEEEEECCCCeEEECCC-CCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence            986     579999999999999986 667777888889999999999742              248999999999999


Q ss_pred             ccccccccCceeEEEeCCeEEEEec
Q 044903          321 VVKSDLLKGARHAAAGGGRVCAVCE  345 (387)
Q Consensus       321 v~~~~~~~~~~~~~~~~~~l~v~gg  345 (387)
                      +  ++..+..++++.++++||++..
T Consensus       283 ~--~~~~r~~~~~~~~~~~l~v~~~  305 (315)
T 4asc_A          283 V--LREIAYAAGATFLPVRLNVLRL  305 (315)
T ss_dssp             E--ESCSSCCSSCEEEEEEECGGGS
T ss_pred             h--ccCCcCccceEEeCCEEEEEEe
Confidence            9  3444555778889999999843

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=6.9e-33  Score=256.94  Aligned_cols=234  Identities=20%  Similarity=0.298  Sum_probs=193.1

Q ss_pred             eEEEeecCCCC---C-CCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC
Q 044903           84 SLYALFSPKSN---S-SSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF  159 (387)
Q Consensus        84 ~l~~~~~~~~~---~-~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~  159 (387)
                      .+|++++....   . ......+++||+.+++|..++++|..               |.++++++++++||++||.....
T Consensus        58 ~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~iyv~GG~~~~~  122 (318)
T 2woz_A           58 QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA---------------RCLFGLGEVDDKIYVVAGKDLQT  122 (318)
T ss_dssp             CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC---------------BCSCEEEEETTEEEEEEEEBTTT
T ss_pred             EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc---------------ccccceEEECCEEEEEcCccCCC
Confidence            58888873100   0 01122489999999999999888762               55688899999999999976433


Q ss_pred             CCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          160 NPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       160 ~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      ....+++++||+.+++|++++++|.+|..++++..+++|||+||...  .....+++++||+.+++    |+.++++|.+
T Consensus       123 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~yd~~~~~----W~~~~~~p~~  196 (318)
T 2woz_A          123 EASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTD--DKKCTNRVFIYNPKKGD----WKDLAPMKTP  196 (318)
T ss_dssp             CCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEES--SSCBCCCEEEEETTTTE----EEEECCCSSC
T ss_pred             CcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCC--CCCccceEEEEcCCCCE----EEECCCCCCC
Confidence            45668899999999999999999999999999999999999999854  23457899999999999    9999999977


Q ss_pred             cccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC---------
Q 044903          240 RFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS---------  305 (387)
Q Consensus       240 ~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~---------  305 (387)
                      +.   .+.+++++++||++||..     ..+++||+++++|+.++. ++..+..+++++.+++||++||..         
T Consensus       197 r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~  272 (318)
T 2woz_A          197 RS---MFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE-FPQERSSISLVSLAGSLYAIGGFAMIQLESKEF  272 (318)
T ss_dssp             CB---SCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC-CSSCCBSCEEEEETTEEEEECCBCCBC----CC
T ss_pred             cc---cceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC-CCCcccceEEEEECCEEEEECCeeccCCCCcee
Confidence            64   488899999999999975     678999999999999986 566677888899999999999742         


Q ss_pred             -----CeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEe
Q 044903          306 -----CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVC  344 (387)
Q Consensus       306 -----~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~g  344 (387)
                           .++++||+++++|+++  ++..+..++++.++++|||+.
T Consensus       273 ~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          273 APTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLNLFK  314 (318)
T ss_dssp             BCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEEGGG
T ss_pred             ccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEEEEE
Confidence                 4699999999999998  555566677888999999873

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.5e-32  Score=258.67  Aligned_cols=255  Identities=13%  Similarity=0.159  Sum_probs=198.2

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCC--CCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCc-c--CC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPV--SSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAAT-T--HN  158 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~-~--~~  158 (387)
                      .+|++++.      ....+++||+.  +++|..++++|..|              |.++++++++++||++||. .  ..
T Consensus        21 ~iyv~GG~------~~~~~~~~d~~~~~~~W~~~~~~p~~~--------------R~~~~~~~~~~~lyv~GG~~~~~~~   80 (357)
T 2uvk_A           21 TVYIGLGS------AGTAWYKLDTQAKDKKWTALAAFPGGP--------------RDQATSAFIDGNLYVFGGIGKNSEG   80 (357)
T ss_dssp             EEEEECGG------GTTCEEEEETTSSSCCEEECCCCTTCC--------------CBSCEEEEETTEEEEECCEEECTTS
T ss_pred             EEEEEeCc------CCCeEEEEccccCCCCeeECCCCCCCc--------------CccceEEEECCEEEEEcCCCCCCCc
Confidence            47888763      12368999997  48999999988311              5668899999999999997 3  11


Q ss_pred             CCCCCCccEEEeCCCCceeeCCCCC-CCceeeeEEeeCCEEEEEecCCCCC-----------------------------
Q 044903          159 FNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGYSRGAVYVASGIGSQF-----------------------------  208 (387)
Q Consensus       159 ~~~~~~~~~vydp~t~~W~~l~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~-----------------------------  208 (387)
                      .....+++++||+.+++|+++++|+ .+|..+++++.+++|||+||.....                             
T Consensus        81 ~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (357)
T 2uvk_A           81 LTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKK  160 (357)
T ss_dssp             CEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSC
T ss_pred             cceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccc
Confidence            2345788999999999999999998 8999998888999999999975310                             


Q ss_pred             --CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEEC--CCCceeec
Q 044903          209 --SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDV--VANTWDDM  278 (387)
Q Consensus       209 --~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~--~~~~W~~~  278 (387)
                        .....+.+++||+.+++    |+.++++|.++  +..+++++++++||++||..      ..+++||+  ++++|+.+
T Consensus       161 ~~~~~~~~~v~~yd~~~~~----W~~~~~~p~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~  234 (357)
T 2uvk_A          161 AEDYFFNKFLLSFDPSTQQ----WSYAGESPWYG--TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL  234 (357)
T ss_dssp             GGGGCCCCEEEEEETTTTE----EEEEEECSSCC--CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEEC
T ss_pred             ccccCCcccEEEEeCCCCc----EEECCCCCCCC--cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec
Confidence              00235799999999999    99999888654  22378889999999999863      67888986  89999999


Q ss_pred             cccc-cCCCCCcEEEEeCCeEEEEeCCC----------------------CeEEEEeCCCCceEEccccccccCceeEEE
Q 044903          279 REGM-VRGWRGPVAAMDEEVLYGIDENS----------------------CTLSKYDEVMDDWKEVVKSDLLKGARHAAA  335 (387)
Q Consensus       279 ~~~~-~~~~~~~~~~~~~g~ly~~g~~~----------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~  335 (387)
                      +... +..+.++++++.+++||++||..                      ..+++||+++++|+.+..+|..+..++++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  314 (357)
T 2uvk_A          235 APVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP  314 (357)
T ss_dssp             CCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE
T ss_pred             CCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE
Confidence            7632 33344677888999999999832                      258999999999999998888888888899


Q ss_pred             eCCeEEEEecCC------ceEEEEEecCCCCCceeEEcC
Q 044903          336 GGGRVCAVCENG------GGIVVVDVKAAAAPTIFVVDT  368 (387)
Q Consensus       336 ~~~~l~v~gg~~------~~i~v~d~~~~~~~~~W~~~~  368 (387)
                      ++++|||+||.+      ..+++++.+++    .|....
T Consensus       315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~----~~~~~~  349 (357)
T 2uvk_A          315 WNNSLLIIGGETAGGKAVTDSVLITVKDN----KVTVQN  349 (357)
T ss_dssp             ETTEEEEEEEECGGGCEEEEEEEEEC-CC----SCEEEC
T ss_pred             eCCEEEEEeeeCCCCCEeeeEEEEEEcCc----EeEeee
Confidence            999999999842      46788899876    787633

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=5.2e-32  Score=249.55  Aligned_cols=249  Identities=17%  Similarity=0.185  Sum_probs=200.2

Q ss_pred             hHHHhhHhhhhhccCCCCCCc-------ceEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCcc
Q 044903           62 ILHNVCHSWRRLIYSPSFPPF-------LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFL  134 (387)
Q Consensus        62 ~~r~Vck~W~~li~s~~f~~~-------~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~  134 (387)
                      ++....++|..+...|.-+..       -.+|++++.   .......+++||+.+++|..++++|..             
T Consensus        28 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~d~~~~~W~~~~~~p~~-------------   91 (306)
T 3ii7_A           28 YFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGS---QLFPIKRMDCYNVVKDSWYSKLGPPTP-------------   91 (306)
T ss_dssp             EEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCB---SSSBCCEEEEEETTTTEEEEEECCSSC-------------
T ss_pred             EecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCC---CCCCcceEEEEeCCCCeEEECCCCCcc-------------
Confidence            334455678877554432211       258888874   223345699999999999999887752             


Q ss_pred             ccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCC-CCCC
Q 044903          135 SRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFS-SDVA  213 (387)
Q Consensus       135 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~  213 (387)
                        +.++++++++++||++||.+.. ....+++++||+.+++|+++++||.+|..++++.++++|||+||...... ....
T Consensus        92 --r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           92 --RDSLAACAAEGKIYTSGGSEVG-NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             --CBSCEEEEETTEEEEECCBBTT-BSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred             --ccceeEEEECCEEEEECCCCCC-CcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence              5568888999999999997622 45678899999999999999999999999999999999999999854210 1127


Q ss_pred             ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCC
Q 044903          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRG  288 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~  288 (387)
                      +.+++||+.+++    |+.++++|.++.   .+.+++++++||++||..     ..+++||+++++|+.++. ++..+..
T Consensus       169 ~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~  240 (306)
T 3ii7_A          169 NSCEVYDPATET----WTELCPMIEARK---NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP-MPWKGVT  240 (306)
T ss_dssp             CCEEEEETTTTE----EEEECCCSSCCB---SCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC-CSCCBSC
T ss_pred             ceEEEeCCCCCe----EEECCCccchhh---cceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC-CCCCccc
Confidence            899999999999    999999997764   488999999999999975     689999999999999976 6667778


Q ss_pred             cEEEEeCCeEEEEeCCC-----CeEEEEeCCCCceEEccccccccCceeEEEeC
Q 044903          289 PVAAMDEEVLYGIDENS-----CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGG  337 (387)
Q Consensus       289 ~~~~~~~g~ly~~g~~~-----~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~  337 (387)
                      +++++.+++||++||.+     .++++||+++++|+.+..+|..+..++++.+.
T Consensus       241 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~  294 (306)
T 3ii7_A          241 VKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVV  294 (306)
T ss_dssp             CEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEE
T ss_pred             eeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEEC
Confidence            88888999999999843     57999999999999999888777666555543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.2e-32  Score=249.04  Aligned_cols=249  Identities=17%  Similarity=0.237  Sum_probs=199.3

Q ss_pred             HHhhHhhhhhccCCCCCCc-------ceEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCcccc
Q 044903           64 HNVCHSWRRLIYSPSFPPF-------LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSR  136 (387)
Q Consensus        64 r~Vck~W~~li~s~~f~~~-------~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~  136 (387)
                      ....++|..+..-|.-+..       -.+|++++..  .......+++||+.+++|..++++|..               
T Consensus        36 d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------   98 (302)
T 2xn4_A           36 DFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFN--GSLRVRTVDSYDPVKDQWTSVANMRDR---------------   98 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBC--SSSBCCCEEEEETTTTEEEEECCCSSC---------------
T ss_pred             cCcCCcEeEcccCCcccccceEEEECCEEEEEeCcC--CCccccceEEECCCCCceeeCCCCCcc---------------
Confidence            3445577776444432111       2588887631  112234589999999999999987762               


Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceE
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v  216 (387)
                      |.++++++++++||++||...  ....+++++||+.+++|+++++||.+|..++++.++++|||+||.... .....+.+
T Consensus        99 r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~  175 (302)
T 2xn4_A           99 RSTLGAAVLNGLLYAVGGFDG--STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVA-SRQCLSTV  175 (302)
T ss_dssp             CBSCEEEEETTEEEEEEEECS--SCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT-TTEECCCE
T ss_pred             ccceEEEEECCEEEEEcCCCC--CccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCC-CCccccEE
Confidence            556888899999999999764  345678999999999999999999999999999999999999998542 11346789


Q ss_pred             EEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCcEE
Q 044903          217 EKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       217 ~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                      ++||+.+++    |+.++++|.++.   .+.+++++++||++||..     ..+++||+++++|+.++. ++..+..+++
T Consensus       176 ~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~  247 (302)
T 2xn4_A          176 ECYNATTNE----WTYIAEMSTRRS---GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-MNMCRRNAGV  247 (302)
T ss_dssp             EEEETTTTE----EEEECCCSSCCB---SCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC-CSSCCBSCEE
T ss_pred             EEEeCCCCc----EEECCCCccccc---cccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC-CCCccccCeE
Confidence            999999999    999999997664   488999999999999975     689999999999999986 5666677888


Q ss_pred             EEeCCeEEEEeCCC-----CeEEEEeCCCCceEEcc-ccccccCceeEEEeCCeE
Q 044903          292 AMDEEVLYGIDENS-----CTLSKYDEVMDDWKEVV-KSDLLKGARHAAAGGGRV  340 (387)
Q Consensus       292 ~~~~g~ly~~g~~~-----~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~l  340 (387)
                      ++.+++||++||.+     .++++||+++++|+.+. .++..+..++++.++++|
T Consensus       248 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~i  302 (302)
T 2xn4_A          248 CAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL  302 (302)
T ss_dssp             EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEEEC--
T ss_pred             EEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccceEEEecccC
Confidence            88999999999854     35999999999999997 677777778888888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=4e-31  Score=243.97  Aligned_cols=215  Identities=13%  Similarity=0.195  Sum_probs=182.1

Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCC-CCCCCCce
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQ-FSSDVAKS  215 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~  215 (387)
                      +.++.++..++.||++||. .  ....+++++||+.+++|++++++|.+|..++++.++++|||+||.... ......+.
T Consensus        15 ~~~~~~~~~~~~i~v~GG~-~--~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~   91 (308)
T 1zgk_A           15 PRGSHAPKVGRLIYTAGGY-F--RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA   91 (308)
T ss_dssp             ------CCCCCCEEEECCB-S--SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCC
T ss_pred             eCCccccCCCCEEEEEeCc-C--CCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecce
Confidence            5567888899999999997 2  356788999999999999999999999999999999999999998310 01345678


Q ss_pred             EEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCcE
Q 044903          216 VEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       216 v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      +++||+.+++    |+.++++|.++.   .+.+++++++||++||..     ..+++||+.+++|+.++. ++..+..++
T Consensus        92 ~~~~d~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~  163 (308)
T 1zgk_A           92 LDCYNPMTNQ----WSPCAPMSVPRN---RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP-MLTRRIGVG  163 (308)
T ss_dssp             EEEEETTTTE----EEECCCCSSCCB---TCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCC-CSSCCBSCE
T ss_pred             EEEECCCCCe----EeECCCCCcCcc---ccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCC-CCccccceE
Confidence            9999999999    999999997764   488999999999999965     689999999999999986 566777888


Q ss_pred             EEEeCCeEEEEeCCC-----CeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCC
Q 044903          291 AAMDEEVLYGIDENS-----CTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAA  360 (387)
Q Consensus       291 ~~~~~g~ly~~g~~~-----~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~  360 (387)
                      +++.+++||++||..     .++++||+++++|+.+..+|..+..++++.++++|||+||.+     ..+++||+.+.  
T Consensus       164 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--  241 (308)
T 1zgk_A          164 VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE--  241 (308)
T ss_dssp             EEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT--
T ss_pred             EEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC--
Confidence            889999999999843     469999999999999998888888888899999999998853     67999999976  


Q ss_pred             CceeEE
Q 044903          361 PTIFVV  366 (387)
Q Consensus       361 ~~~W~~  366 (387)
                        .|+.
T Consensus       242 --~W~~  245 (308)
T 1zgk_A          242 --TWTF  245 (308)
T ss_dssp             --EEEE
T ss_pred             --cEEE
Confidence              8997

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.6e-31  Score=243.28  Aligned_cols=246  Identities=15%  Similarity=0.230  Sum_probs=199.8

Q ss_pred             hhHHHhhHhhhhhccCCCCCCc-------ceEEEeecCCCCCCCCCeEEEEEeCCCCC---cccCCCCCCCCCccccccC
Q 044903           61 SILHNVCHSWRRLIYSPSFPPF-------LSLYALFSPKSNSSSTPIHLFTFDPVSST---WDPLPPPPPDPPLHLILHH  130 (387)
Q Consensus        61 ~~~r~Vck~W~~li~s~~f~~~-------~~l~~~~~~~~~~~~~~~~~~~~d~~~~~---W~~l~~~~~~p~~~~~~~~  130 (387)
                      ..+....++|..+...|.-+..       -.+|++++..  .......+++||+.+++   |..++++|..         
T Consensus        34 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~---------  102 (301)
T 2vpj_A           34 EKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD--GRSRLSSVECLDYTADEDGVWYSVAPMNVR---------  102 (301)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC--SSCBCCCEEEEETTCCTTCCCEEECCCSSC---------
T ss_pred             EEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC--CCccCceEEEEECCCCCCCeeEECCCCCCC---------
Confidence            3444556778877654432211       2578887631  11223458999999999   9999887762         


Q ss_pred             CCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCC
Q 044903          131 PSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSS  210 (387)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~  210 (387)
                            +.++.+++.+++||++||...  ....+++++||+.+++|++++++|.+|..++++.++++||++||...   .
T Consensus       103 ------r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~  171 (301)
T 2vpj_A          103 ------RGLAGATTLGDMIYVSGGFDG--SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG---L  171 (301)
T ss_dssp             ------CBSCEEEEETTEEEEECCBCS--SCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS---S
T ss_pred             ------ccceeEEEECCEEEEEcccCC--CcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC---C
Confidence                  556888889999999999764  34578899999999999999999999999999999999999999865   2


Q ss_pred             CCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCC
Q 044903          211 DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRG  285 (387)
Q Consensus       211 ~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~  285 (387)
                      ...+.+++||+.+++    |+.++++|.++.   .+.+++++++||++||..     ..+++||+++++|+.++. ++..
T Consensus       172 ~~~~~~~~~d~~~~~----W~~~~~~p~~r~---~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~  243 (301)
T 2vpj_A          172 NILNSVEKYDPHTGH----WTNVTPMATKRS---GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS-MTTP  243 (301)
T ss_dssp             CBCCCEEEEETTTTE----EEEECCCSSCCB---SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC-CSSC
T ss_pred             cccceEEEEeCCCCc----EEeCCCCCcccc---cceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC-CCCc
Confidence            467899999999999    999999987764   488999999999999975     689999999999999986 5666


Q ss_pred             CCCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCceEEccccccccCceeEEEe
Q 044903          286 WRGPVAAMDEEVLYGIDENS-----CTLSKYDEVMDDWKEVVKSDLLKGARHAAAG  336 (387)
Q Consensus       286 ~~~~~~~~~~g~ly~~g~~~-----~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~  336 (387)
                      +..+++++.+++||++||.+     ..+++||+++++|+.+..+|..+..++++.+
T Consensus       244 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~  299 (301)
T 2vpj_A          244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL  299 (301)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEEE
T ss_pred             ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEEEe
Confidence            67788888999999999854     3699999999999999988887777766654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.97  E-value=5.9e-30  Score=240.94  Aligned_cols=218  Identities=14%  Similarity=0.123  Sum_probs=172.2

Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCC--CCceeeCCCCC-CCceeeeEEeeCCEEEEEecCCC--CCCCC
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPI--CRTWTFGPELV-TPRRWCAAGYSRGAVYVASGIGS--QFSSD  211 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~--t~~W~~l~~~~-~~r~~~~~~~~~~~iyv~GG~~~--~~~~~  211 (387)
                      +.++.+++++++||++||...      +++++||+.  +++|+++++|| .+|..+++++++++|||+||...  .....
T Consensus        10 r~~~~~~~~~~~iyv~GG~~~------~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~   83 (357)
T 2uvk_A           10 FKSGTGAIDNDTVYIGLGSAG------TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQ   83 (357)
T ss_dssp             CCSCEEEEETTEEEEECGGGT------TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEE
T ss_pred             ccceEEEEECCEEEEEeCcCC------CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccce
Confidence            445777788999999999753      479999998  49999999999 89999999999999999999822  11124


Q ss_pred             CCceEEEEeCCCCccccCeEEcCCCC-CCcccccceeEEEECCEEEEEeeeC----------------------------
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTGELK-DGRFSREAIDAVGWKGKLCLVNVKG----------------------------  262 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~~~~-~~~~~~~~~~~v~~~g~lyv~gg~~----------------------------  262 (387)
                      ..+++++||+.+++    |+.+++|+ .++   ..+++++++++||++||..                            
T Consensus        84 ~~~~v~~yd~~~~~----W~~~~~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (357)
T 2uvk_A           84 VFNDVHKYNPKTNS----WVKLMSHAPMGM---AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY  156 (357)
T ss_dssp             ECCCEEEEETTTTE----EEECSCCCSSCC---SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eeccEEEEeCCCCc----EEECCCCCCccc---ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence            57899999999999    99999988 444   4488888999999999964                            


Q ss_pred             -----------CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCC------CCeEEEEeC--CCCceEEccc
Q 044903          263 -----------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDEN------SCTLSKYDE--VMDDWKEVVK  323 (387)
Q Consensus       263 -----------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~------~~~v~~yd~--~~~~W~~v~~  323 (387)
                                 ..+++||+.+++|+.++..+...+.++++++.+++||++||.      ...+++||+  ++++|+.+..
T Consensus       157 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~  236 (357)
T 2uvk_A          157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAP  236 (357)
T ss_dssp             HSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCC
T ss_pred             ccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCC
Confidence                       489999999999999976332334458888899999999974      346888976  9999999987


Q ss_pred             ccccc--CceeEEEeCCeEEEEecCC----------------------ceEEEEEecCCCCCceeEE--cCCCC
Q 044903          324 SDLLK--GARHAAAGGGRVCAVCENG----------------------GGIVVVDVKAAAAPTIFVV--DTPLG  371 (387)
Q Consensus       324 ~~~~~--~~~~~~~~~~~l~v~gg~~----------------------~~i~v~d~~~~~~~~~W~~--~~~~~  371 (387)
                      ++..+  ..++++..+++|||+||.+                      ..+++||+.+.    .|+.  .+|..
T Consensus       237 ~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~  306 (357)
T 2uvk_A          237 VSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG----KWDKSGELSQG  306 (357)
T ss_dssp             SSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-------CEEEEECSSC
T ss_pred             CCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC----ceeeCCCCCCC
Confidence            75544  3566889999999998832                      35899999976    8996  44433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=1.3e-28  Score=250.80  Aligned_cols=236  Identities=9%  Similarity=0.094  Sum_probs=182.9

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCC-CCCCCCCccccccCCCccccccceeEEEe--CCEEEEEcCccCCCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLP-PPPPDPPLHLILHHPSFLSRNLPVQLVSL--SGKLILLAATTHNFN  160 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~~  160 (387)
                      .+|++++..   ......+++||+.+++|..++ ++|... .         -.+|.+|+++++  +++||++||.... .
T Consensus       399 ~iyv~GG~~---~~~~~~v~~yd~~~~~W~~~~~~~p~~~-~---------p~~R~~hs~~~~~~~~~lyv~GG~~~~-~  464 (695)
T 2zwa_A          399 DVFYMGGSN---PYRVNEILQLSIHYDKIDMKNIEVSSSE-V---------PVARMCHTFTTISRNNQLLLIGGRKAP-H  464 (695)
T ss_dssp             CEEEECCBS---SSBCCCEEEEEECSSCEEEEECCCCCSC-C---------CCCCBSCEEEEETTTTEEEEECCBSST-T
T ss_pred             EEEEECCCC---CCCcCcEEEEECCCCeEEEeccCCCCCC-C---------CccccceEEEEEccCCEEEEEcCCCCC-C
Confidence            478887631   123345899999999999988 643100 0         112667899999  9999999997652 2


Q ss_pred             CCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCC---C
Q 044903          161 PALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGE---L  236 (387)
Q Consensus       161 ~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~---~  236 (387)
                      ...+++++||+.+++|+++++||.+|..|+++++ +++|||+||....   .   .+++||+.+++    |+.+++   +
T Consensus       465 ~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~---~---~v~~yd~~t~~----W~~~~~~g~~  534 (695)
T 2zwa_A          465 QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG---P---AMLLYNVTEEI----FKDVTPKDEF  534 (695)
T ss_dssp             CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS---C---SEEEEETTTTE----EEECCCSSGG
T ss_pred             CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC---C---CEEEEECCCCc----eEEccCCCCC
Confidence            3578899999999999999999999999999996 9999999998652   1   89999999999    999987   6


Q ss_pred             CCCcccccceeEEEEC---CEEEEEeeeC-------CeEEEEECCCCc------eeeccccccCCCCCcEEEEeC-CeEE
Q 044903          237 KDGRFSREAIDAVGWK---GKLCLVNVKG-------AEGAVYDVVANT------WDDMREGMVRGWRGPVAAMDE-EVLY  299 (387)
Q Consensus       237 ~~~~~~~~~~~~v~~~---g~lyv~gg~~-------~~i~~yD~~~~~------W~~~~~~~~~~~~~~~~~~~~-g~ly  299 (387)
                      |.++   ..+++++++   ++||++||..       .++++||+.+++      |+.+...++.++.++++++.+ ++||
T Consensus       535 p~~r---~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy  611 (695)
T 2zwa_A          535 FQNS---LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL  611 (695)
T ss_dssp             GGSC---CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred             CCcc---cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence            6555   447777777   9999999973       679999999999      888876334566678888888 9999


Q ss_pred             EEeCC--------CCeEEEEeCCCCceEEcccc-------ccccCceeEEEeCC-eEEEEecC
Q 044903          300 GIDEN--------SCTLSKYDEVMDDWKEVVKS-------DLLKGARHAAAGGG-RVCAVCEN  346 (387)
Q Consensus       300 ~~g~~--------~~~v~~yd~~~~~W~~v~~~-------~~~~~~~~~~~~~~-~l~v~gg~  346 (387)
                      ++||.        ...+++||+++++|+.+..+       ++....++++.+++ +|||+||+
T Consensus       612 v~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          612 IVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             EECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             EECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            99983        34699999999999976422       12233466666665 99999885

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=1.7e-27  Score=242.59  Aligned_cols=213  Identities=9%  Similarity=0.055  Sum_probs=176.4

Q ss_pred             ccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC-C-----CCCCceeeeEEee--CCEEEEEecCCCCC
Q 044903          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP-E-----LVTPRRWCAAGYS--RGAVYVASGIGSQF  208 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~-~-----~~~~r~~~~~~~~--~~~iyv~GG~~~~~  208 (387)
                      ++++. ++.++.||++||...   ...+++++||+.+++|+.++ +     ||.+|..|+++++  +++|||+||.... 
T Consensus       389 r~g~~-~~~~~~iyv~GG~~~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~-  463 (695)
T 2zwa_A          389 KFGDV-DVAGNDVFYMGGSNP---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAP-  463 (695)
T ss_dssp             BSCEE-EECSSCEEEECCBSS---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSST-
T ss_pred             ceeEE-EEECCEEEEECCCCC---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCC-
Confidence            45543 448999999999754   45688999999999999988 5     7899999999999  9999999998652 


Q ss_pred             CCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEEeeeC--CeEEEEECCCCceeeccc--ccc
Q 044903          209 SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG--AEGAVYDVVANTWDDMRE--GMV  283 (387)
Q Consensus       209 ~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~--~~~  283 (387)
                       ....+++++||+.+++    |+.++++|.++..   |+++++ +|+||++||..  ..+++||+.+++|+.++.  .++
T Consensus       464 -~~~~~dv~~yd~~t~~----W~~~~~~p~~R~~---h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p  535 (695)
T 2zwa_A          464 -HQGLSDNWIFDMKTRE----WSMIKSLSHTRFR---HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFF  535 (695)
T ss_dssp             -TCBCCCCEEEETTTTE----EEECCCCSBCCBS---CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGG
T ss_pred             -CCccccEEEEeCCCCc----EEECCCCCCCccc---ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCC
Confidence             3357889999999999    9999999977654   888886 99999999986  379999999999999975  255


Q ss_pred             CCCCCcEEEEeC---CeEEEEeCC-------CCeEEEEeCCCCc------eEEcccc-ccccCceeEEEeC-CeEEEEec
Q 044903          284 RGWRGPVAAMDE---EVLYGIDEN-------SCTLSKYDEVMDD------WKEVVKS-DLLKGARHAAAGG-GRVCAVCE  345 (387)
Q Consensus       284 ~~~~~~~~~~~~---g~ly~~g~~-------~~~v~~yd~~~~~------W~~v~~~-~~~~~~~~~~~~~-~~l~v~gg  345 (387)
                      ..+.++++++++   ++||++||.       ..++++||+++++      |+.+..+ +..+..++++.++ ++|||+||
T Consensus       536 ~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG  615 (695)
T 2zwa_A          536 QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG  615 (695)
T ss_dssp             GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred             CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence            566667766655   889999985       2469999999999      8988775 3556677888888 99999998


Q ss_pred             C--------CceEEEEEecCCCCCceeEE
Q 044903          346 N--------GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       346 ~--------~~~i~v~d~~~~~~~~~W~~  366 (387)
                      .        ...+++||+.+.    .|+.
T Consensus       616 ~~~~~~~~~~~~v~~yd~~t~----~W~~  640 (695)
T 2zwa_A          616 TSPSGLFDRTNSIISLDPLSE----TLTS  640 (695)
T ss_dssp             BCSSCCCCTTTSEEEEETTTT----EEEE
T ss_pred             ccCCCCCCCCCeEEEEECCCC----eEEE
Confidence            4        256999999976    8985

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.94  E-value=8e-26  Score=229.52  Aligned_cols=256  Identities=13%  Similarity=0.118  Sum_probs=188.4

Q ss_pred             hhHhhhhhccCCCCCCc-------ceEEEeecCCCCC----CCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCcc
Q 044903           66 VCHSWRRLIYSPSFPPF-------LSLYALFSPKSNS----SSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFL  134 (387)
Q Consensus        66 Vck~W~~li~s~~f~~~-------~~l~~~~~~~~~~----~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~  134 (387)
                      ...+|..+...|.....       -.+|++++.....    ......+++||+.+++|..++.++....           
T Consensus       174 ~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-----------  242 (656)
T 1k3i_A          174 GLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-----------  242 (656)
T ss_dssp             TSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-----------
T ss_pred             CCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC-----------
Confidence            34578777766653211       1477777532110    1122358999999999999987765210           


Q ss_pred             ccccceeEE-EeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCC
Q 044903          135 SRNLPVQLV-SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       135 ~~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~  212 (387)
                        .+.++++ ..+++||++||...      .++++|||.+++|+++++|+.+|.+++++++ +++|||+||...  ....
T Consensus       243 --~~~~~~~~~~~g~lyv~GG~~~------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~--~~~~  312 (656)
T 1k3i_A          243 --MFCPGISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS--GGVF  312 (656)
T ss_dssp             --CSSCEEEECTTSCEEEECSSST------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCC--SSSC
T ss_pred             --CccccccCCCCCCEEEeCCCCC------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCccc--CCcc
Confidence              1112333 36899999999643      3799999999999999999999999999998 999999999543  1346


Q ss_pred             CceEEEEeCCCCccccCeEEcC-----CCCCCcc----------------------------------------------
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTG-----ELKDGRF----------------------------------------------  241 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~-----~~~~~~~----------------------------------------------  241 (387)
                      .+++|+||+.+++    |+.++     +|+..+.                                              
T Consensus       313 ~~~~e~yd~~t~~----W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~  388 (656)
T 1k3i_A          313 EKNGEVYSPSSKT----WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR  388 (656)
T ss_dssp             CCCEEEEETTTTE----EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC
T ss_pred             cccceEeCCCCCc----ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc
Confidence            7889999999999    99973     3433210                                              


Q ss_pred             --------cccceeEEE---ECCEEEEEeeeC--------C---eEEEEECCCCceeecc-ccccCCCCCcEEEEe-CCe
Q 044903          242 --------SREAIDAVG---WKGKLCLVNVKG--------A---EGAVYDVVANTWDDMR-EGMVRGWRGPVAAMD-EEV  297 (387)
Q Consensus       242 --------~~~~~~~v~---~~g~lyv~gg~~--------~---~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~~~-~g~  297 (387)
                              .+..+.+++   ++++||++||..        .   .+++||+.+++|..+. ..++.++..+++++. +|+
T Consensus       389 ~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~  468 (656)
T 1k3i_A          389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS  468 (656)
T ss_dssp             EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC
T ss_pred             ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC
Confidence                    001123332   489999999953        2   7899999999999886 446777767776666 999


Q ss_pred             EEEEeCCC-----------CeEEEEeCCCCceEEccccccccCceeEEEe--CCeEEEEecC
Q 044903          298 LYGIDENS-----------CTLSKYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCEN  346 (387)
Q Consensus       298 ly~~g~~~-----------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~~~l~v~gg~  346 (387)
                      ||++||.+           ..+++||+++++|+.+..++..+..++++.+  +|+|||+||+
T Consensus       469 i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            99999842           4589999999999999988887777766666  9999999985

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.94  E-value=7.9e-26  Score=229.56  Aligned_cols=230  Identities=13%  Similarity=0.134  Sum_probs=175.4

Q ss_pred             EEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEe--CCEEEEEcCccCCC----CCCCCccEEEeCCCCc
Q 044903          102 LFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSL--SGKLILLAATTHNF----NPALTRPLIFDPICRT  175 (387)
Q Consensus       102 ~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~----~~~~~~~~vydp~t~~  175 (387)
                      +..|||.+++|..++++|..                 ++.+++.  +++||++||.....    ......+++||+.+++
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~-----------------~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~  230 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIV-----------------PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI  230 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSC-----------------CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC
T ss_pred             cccCCCCCCeeeeeccCCCC-----------------ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc
Confidence            34578999999998877751                 2444554  99999999975421    1123468999999999


Q ss_pred             eeeCCCCCCCceeee---EEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-
Q 044903          176 WTFGPELVTPRRWCA---AGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-  251 (387)
Q Consensus       176 W~~l~~~~~~r~~~~---~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-  251 (387)
                      |+.+++|+.+|..++   ++..+++|||+||...       .++++||+.+++    |..+++|+.+|..   +.++++ 
T Consensus       231 w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-------~~v~~yd~~t~~----W~~~~~~~~~R~~---~s~~~~~  296 (656)
T 1k3i_A          231 VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-------KKTSLYDSSSDS----WIPGPDMQVARGY---QSSATMS  296 (656)
T ss_dssp             BCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-------TCEEEEEGGGTE----EEECCCCSSCCSS---CEEEECT
T ss_pred             EEeCcccCCCCCCccccccCCCCCCEEEeCCCCC-------CceEEecCcCCc----eeECCCCCccccc---cceEEec
Confidence            999999988876543   3346899999999754       179999999999    9999999977643   888888 


Q ss_pred             CCEEEEEeee-C-----CeEEEEECCCCceeeccc----cccCC------------------------------------
Q 044903          252 KGKLCLVNVK-G-----AEGAVYDVVANTWDDMRE----GMVRG------------------------------------  285 (387)
Q Consensus       252 ~g~lyv~gg~-~-----~~i~~yD~~~~~W~~~~~----~~~~~------------------------------------  285 (387)
                      +|+||++||. .     ..+++||+++++|+.++.    .++..                                    
T Consensus       297 dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~  376 (656)
T 1k3i_A          297 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT  376 (656)
T ss_dssp             TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred             CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence            9999999994 2     689999999999998631    01110                                    


Q ss_pred             ---------------------CCCcEEEE---eCCeEEEEeCCC--------C---eEEEEeCCCCceEEcc--cccccc
Q 044903          286 ---------------------WRGPVAAM---DEEVLYGIDENS--------C---TLSKYDEVMDDWKEVV--KSDLLK  328 (387)
Q Consensus       286 ---------------------~~~~~~~~---~~g~ly~~g~~~--------~---~v~~yd~~~~~W~~v~--~~~~~~  328 (387)
                                           ....++++   .+++||++||..        .   .+.+||++++.|+++.  .+|..+
T Consensus       377 ~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R  456 (656)
T 1k3i_A          377 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR  456 (656)
T ss_dssp             STTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC
T ss_pred             CCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCc
Confidence                                 01123332   489999999842        2   6889999999999986  677777


Q ss_pred             CceeEEEe-CCeEEEEecCC-----------ceEEEEEecCCCCCceeEE
Q 044903          329 GARHAAAG-GGRVCAVCENG-----------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       329 ~~~~~~~~-~~~l~v~gg~~-----------~~i~v~d~~~~~~~~~W~~  366 (387)
                      ..+.++.+ +|+|||+||.+           ..+++||+.+.    .|+.
T Consensus       457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~----~W~~  502 (656)
T 1k3i_A          457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD----TFYK  502 (656)
T ss_dssp             BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT----EEEE
T ss_pred             ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC----ceee
Confidence            76776766 99999999842           56899999976    8997

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.22  E-value=9.7e-10  Score=105.52  Aligned_cols=276  Identities=12%  Similarity=0.093  Sum_probs=145.4

Q ss_pred             CCCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCCcceEEEeecCCCCCCCCCeEEEEEeCCCC-------
Q 044903           41 PLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSS-------  110 (387)
Q Consensus        41 ~~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~-------  110 (387)
                      ..+..||+||+.+||++|+   +.++.+|||+|+.++.++.+++.++.......+  ................       
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~wk~~~~   94 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEP--LHIKRRKVIKPGFIHSPWKSAYI   94 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSC--CCCCC--CCSSCCCCCHHHHHHH
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccc--cccccceecCCCccCCcHHHHHh
Confidence            4678899999999999999   888889999999999987664432210000000  0000000000000011       


Q ss_pred             -------CcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC
Q 044903          111 -------TWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV  183 (387)
Q Consensus       111 -------~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~  183 (387)
                             .|.....-+.    ..+..|..    . -..+...++..++.|+.+       ..+.+||..+.+-...  +.
T Consensus        95 ~~~~~~~~w~~~~~~~~----~~l~~h~~----~-v~~~~~~~g~~l~sg~~d-------g~i~vwd~~~~~~~~~--~~  156 (445)
T 2ovr_B           95 RQHRIDTNWRRGELKSP----KVLKGHDD----H-VITCLQFCGNRIVSGSDD-------NTLKVWSAVTGKCLRT--LV  156 (445)
T ss_dssp             HHHHHHHHHHHSCCCCC----EEEECSTT----S-CEEEEEEETTEEEEEETT-------SCEEEEETTTCCEEEE--CC
T ss_pred             hhhhhhhcccCCCccee----EEecccCC----C-cEEEEEEcCCEEEEEECC-------CcEEEEECCCCcEEEE--Ec
Confidence                   1222111000    00001110    0 023444556666666632       4678999887764331  11


Q ss_pred             CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCC
Q 044903          184 TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGA  263 (387)
Q Consensus       184 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~  263 (387)
                      .......+....+.+++.|+.+.        .+.+||..+++    -...-....     ....++.+++...+.|+.+.
T Consensus       157 ~h~~~v~~~~~~~~~l~s~~~dg--------~i~vwd~~~~~----~~~~~~~h~-----~~v~~~~~~~~~l~s~s~dg  219 (445)
T 2ovr_B          157 GHTGGVWSSQMRDNIIISGSTDR--------TLKVWNAETGE----CIHTLYGHT-----STVRCMHLHEKRVVSGSRDA  219 (445)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTS--------CEEEEETTTTE----EEEEECCCS-----SCEEEEEEETTEEEEEETTS
T ss_pred             CCCCCEEEEEecCCEEEEEeCCC--------eEEEEECCcCc----EEEEECCCC-----CcEEEEEecCCEEEEEeCCC
Confidence            11111222233455666666543        68899988876    322211111     11334445566666777778


Q ss_pred             eEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEE
Q 044903          264 EGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAV  343 (387)
Q Consensus       264 ~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~  343 (387)
                      .+.+||..+.+-...-....   .....+..++..++.++.++.+.+||..+.+-  +............+..++..++.
T Consensus       220 ~i~~wd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~~  294 (445)
T 2ovr_B          220 TLRVWDIETGQCLHVLMGHV---AAVRCVQYDGRRVVSGAYDFMVKVWDPETETC--LHTLQGHTNRVYSLQFDGIHVVS  294 (445)
T ss_dssp             EEEEEESSSCCEEEEEECCS---SCEEEEEECSSCEEEEETTSCEEEEEGGGTEE--EEEECCCSSCEEEEEECSSEEEE
T ss_pred             EEEEEECCCCcEEEEEcCCc---ccEEEEEECCCEEEEEcCCCEEEEEECCCCcE--eEEecCCCCceEEEEECCCEEEE
Confidence            89999988764322111011   11122233666777777788999999876532  22222233333344447777777


Q ss_pred             ecCCceEEEEEecCC
Q 044903          344 CENGGGIVVVDVKAA  358 (387)
Q Consensus       344 gg~~~~i~v~d~~~~  358 (387)
                      |+.++.+.+||+.+.
T Consensus       295 ~~~d~~i~i~d~~~~  309 (445)
T 2ovr_B          295 GSLDTSIRVWDVETG  309 (445)
T ss_dssp             EETTSCEEEEETTTC
T ss_pred             EeCCCeEEEEECCCC
Confidence            777777888887643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.21  E-value=5.8e-10  Score=106.86  Aligned_cols=282  Identities=15%  Similarity=0.127  Sum_probs=153.4

Q ss_pred             CCCCCChHH----HHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCCcceEEEeec--------CCC---------CCC
Q 044903           41 PLLPGLPDH----IAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPFLSLYALFS--------PKS---------NSS   96 (387)
Q Consensus        41 ~~~~~LP~d----l~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~~~~l~~~~~--------~~~---------~~~   96 (387)
                      ..+..||+|    |+..||++|+   +.++.+|||+|+.++.++.+++.++...+..        ...         ...
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   88 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPP   88 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-----
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCC
Confidence            456779999    9999999999   8888999999999999887654321111000        000         000


Q ss_pred             ---CCCeEEE--EE-------eCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCC
Q 044903           97 ---STPIHLF--TF-------DPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALT  164 (387)
Q Consensus        97 ---~~~~~~~--~~-------d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~  164 (387)
                         .+...++  .|       ......|........     ...++.   ....+..+...++..++.|+.+       .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-----~~~~~~---~~~~~v~~~~~d~~~l~~g~~d-------g  153 (435)
T 1p22_A           89 DGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQ-----RIHCRS---ETSKGVYCLQYDDQKIVSGLRD-------N  153 (435)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCC-----CEECCC---SSCCCEEEEECCSSEEEEEESS-------S
T ss_pred             CCCCCchhhHHhhhhhhhcchhHHHhhhccCCccce-----EEeccc---CCCCcEEEEEECCCEEEEEeCC-------C
Confidence               0000000  00       000112332211110     000000   0011233455677777777643       4


Q ss_pred             ccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccccc
Q 044903          165 RPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~  244 (387)
                      .+.+||..+.+-...  +........+...++++++.|+.+.        .+.+||..+++    -...-....     .
T Consensus       154 ~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~dg--------~i~vwd~~~~~----~~~~~~~h~-----~  214 (435)
T 1p22_A          154 TIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS--------TVRVWDVNTGE----MLNTLIHHC-----E  214 (435)
T ss_dssp             CEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS--------CEEEEESSSCC----EEEEECCCC-----S
T ss_pred             eEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCCC--------eEEEEECCCCc----EEEEEcCCC-----C
Confidence            678999887654432  1111112233334777777777644        68899998877    332211111     1


Q ss_pred             ceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccc
Q 044903          245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKS  324 (387)
Q Consensus       245 ~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~  324 (387)
                      ...++.+++.+++.|+.+..+.+||..+..-................+..++...+.++.++.|.+||..+.+-  +...
T Consensus       215 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~  292 (435)
T 1p22_A          215 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--VRTL  292 (435)
T ss_dssp             CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE--EEEE
T ss_pred             cEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE--EEEE
Confidence            13445556666677777789999999876432111101100111122223556667777789999999987643  2233


Q ss_pred             ccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ........++..++..++.|+.++.+.+||+.++
T Consensus       293 ~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          293 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence            3333344455567788888888889999998854

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.10  E-value=1.6e-08  Score=97.40  Aligned_cols=106  Identities=12%  Similarity=-0.012  Sum_probs=66.8

Q ss_pred             EEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccc
Q 044903          249 VGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       249 v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~  327 (387)
                      +..++.+.+.|+.+..+.+||..+.+-...-.....  .-.+++. .++...+.++.++.|.+||..+.+  .+......
T Consensus       276 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h  351 (464)
T 3v7d_B          276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENGE--LMYTLQGH  351 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EEEEECCC
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEEeCC
Confidence            344566666777778899999987643222111111  1112222 345667777788999999998764  33333334


Q ss_pred             cCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          328 KGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ......+..+++.++.|+.++.+.+||+.+.
T Consensus       352 ~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          352 TALVGLLRLSDKFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             SSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred             CCcEEEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence            4445556667888888888899999999853

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.81  E-value=1.7e-09  Score=71.13  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=35.7

Q ss_pred             CCCCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCC
Q 044903           40 QPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPP   81 (387)
Q Consensus        40 ~~~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~   81 (387)
                      ...|..||+||+.+||++||   +.++++|||+|+.++.++.|++
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            35688999999999999999   7788999999999999988754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.59  E-value=1.2e-05  Score=73.82  Aligned_cols=221  Identities=12%  Similarity=-0.022  Sum_probs=128.0

Q ss_pred             CeEEEEEeCCCCCc-ccCCCCCCCCCccccccCCCccccccceeEEE-eCCEEEEEcCccCCCCCCCCccEEEeCCCCce
Q 044903           99 PIHLFTFDPVSSTW-DPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTW  176 (387)
Q Consensus        99 ~~~~~~~d~~~~~W-~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W  176 (387)
                      ...+.++|+.+.+- ..++....                  ...++. .++++|+....       ...+.++|+.|++-
T Consensus        63 ~~~v~viD~~t~~~~~~i~~~~~------------------p~~i~~~~~g~lyv~~~~-------~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           63 SHVIFAIDINTFKEVGRITGFTS------------------PRYIHFLSDEKAYVTQIW-------DYRIFIINPKTYEI  117 (328)
T ss_dssp             GTEEEEEETTTCCEEEEEECCSS------------------EEEEEEEETTEEEEEEBS-------CSEEEEEETTTTEE
T ss_pred             CCEEEEEECcccEEEEEcCCCCC------------------CcEEEEeCCCeEEEEECC-------CCeEEEEECCCCeE
Confidence            34688899988765 33432211                  134444 67899998642       25789999999875


Q ss_pred             ee---CCCCCC-CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEEC
Q 044903          177 TF---GPELVT-PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWK  252 (387)
Q Consensus       177 ~~---l~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~  252 (387)
                      ..   ++.... ...-...+..++++||..-.       ....+.++|+.+++    ....-+......    ..+..-+
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-------~~~~v~viD~~t~~----~~~~i~~g~~p~----~i~~~~d  182 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-------YQNRILKIDTETDK----VVDELTIGIQPT----SLVMDKY  182 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEEETTEEEEEECT-------TCCEEEEEETTTTE----EEEEEECSSCBC----CCEECTT
T ss_pred             EEEEEcCCccccCCCcceEEEECCEEEEEcCC-------CCCEEEEEECCCCe----EEEEEEcCCCcc----ceEEcCC
Confidence            43   222100 00111233378899998521       12378999999987    443222211110    1222336


Q ss_pred             CEEEEEeeeC----------CeEEEEECCCCceeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEE
Q 044903          253 GKLCLVNVKG----------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKE  320 (387)
Q Consensus       253 g~lyv~gg~~----------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~  320 (387)
                      |++|+.....          ..+.++|+++.+....-. .+.+.....+++.  ++.||+...   .+++||+++.+...
T Consensus       183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~  258 (328)
T 3dsm_A          183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPV  258 (328)
T ss_dssp             SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCS
T ss_pred             CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceee
Confidence            8999885432          579999999886542211 1222222344544  567888743   89999998876532


Q ss_pred             cccccc-ccCceeEEE--eCCeEEEEe----cCCceEEEEEecCCCCCceeEE
Q 044903          321 VVKSDL-LKGARHAAA--GGGRVCAVC----ENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       321 v~~~~~-~~~~~~~~~--~~~~l~v~g----g~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      ....+. .....+++.  .+++|||..    ..++.+.+||+...   -.|++
T Consensus       259 ~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~---~~~~i  308 (328)
T 3dsm_A          259 RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGK---LIDEF  308 (328)
T ss_dssp             SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCC---EEEEE
T ss_pred             eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCC---EEEEE
Confidence            221121 223444544  378999997    45678999998833   34554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.55  E-value=2.7e-05  Score=71.42  Aligned_cols=220  Identities=12%  Similarity=-0.022  Sum_probs=129.0

Q ss_pred             CeEEEEEeCCCCCcccCCCC--CCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCce
Q 044903           99 PIHLFTFDPVSSTWDPLPPP--PPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW  176 (387)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W  176 (387)
                      ...+.++|+.+++...--..  ...            .-+..+..++..++++|+....       .+.+.++|+.|.+-
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~------------~lg~~~~~i~~~~~~lyv~~~~-------~~~v~viD~~t~~~   76 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGF------------KLGDVAQSMVIRDGIGWIVVNN-------SHVIFAIDINTFKE   76 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSS------------CCBSCEEEEEEETTEEEEEEGG-------GTEEEEEETTTCCE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCc------------ccCccceEEEEECCEEEEEEcC-------CCEEEEEECcccEE
Confidence            45688999998765431100  000            0012234566678999998752       25789999999876


Q ss_pred             e-eCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC--cccccceeEEEECC
Q 044903          177 T-FGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG--RFSREAIDAVGWKG  253 (387)
Q Consensus       177 ~-~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~--~~~~~~~~~v~~~g  253 (387)
                      . +++....++  ..+..-++++||....+        ..+.++|+.+.+    -...-+.+..  ... .....+..++
T Consensus        77 ~~~i~~~~~p~--~i~~~~~g~lyv~~~~~--------~~v~~iD~~t~~----~~~~i~~g~~~~~~~-~p~~i~~~~~  141 (328)
T 3dsm_A           77 VGRITGFTSPR--YIHFLSDEKAYVTQIWD--------YRIFIINPKTYE----ITGYIECPDMDMESG-STEQMVQYGK  141 (328)
T ss_dssp             EEEEECCSSEE--EEEEEETTEEEEEEBSC--------SEEEEEETTTTE----EEEEEECTTCCTTTC-BCCCEEEETT
T ss_pred             EEEcCCCCCCc--EEEEeCCCeEEEEECCC--------CeEEEEECCCCe----EEEEEEcCCccccCC-CcceEEEECC
Confidence            3 343333333  22233577999986432        378999999887    3321112210  000 1123444789


Q ss_pred             EEEEEee-eCCeEEEEECCCCceee-ccccccCCCCCcEEEEeCCeEEEEeCCC----------CeEEEEeCCCCceEEc
Q 044903          254 KLCLVNV-KGAEGAVYDVVANTWDD-MREGMVRGWRGPVAAMDEEVLYGIDENS----------CTLSKYDEVMDDWKEV  321 (387)
Q Consensus       254 ~lyv~gg-~~~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~~~~g~ly~~g~~~----------~~v~~yd~~~~~W~~v  321 (387)
                      ++|+.+. ....+.++|+++++... ++.+.  . ........+|++|+.....          +.|+++|+++.+....
T Consensus       142 ~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~  218 (328)
T 3dsm_A          142 YVYVNCWSYQNRILKIDTETDKVVDELTIGI--Q-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ  218 (328)
T ss_dssp             EEEEEECTTCCEEEEEETTTTEEEEEEECSS--C-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred             EEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--C-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence            9999864 35789999999886543 22111  1 1112223458899887433          6899999998876543


Q ss_pred             cccccccCceeEEEe--CCeEEEEecCCceEEEEEecCC
Q 044903          322 VKSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ...+.......++..  ++.+|+..+   .++++|+.+.
T Consensus       219 ~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~  254 (328)
T 3dsm_A          219 FKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEAD  254 (328)
T ss_dssp             EECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCS
T ss_pred             EecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCC
Confidence            333322234445544  567777743   8999998754

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.54  E-value=1.6e-08  Score=90.38  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=40.0

Q ss_pred             CCCCCCCChHHHHHHHhhhcC---hh-hHHHhhHhhhhhccCCCCCCcc
Q 044903           39 HQPLLPGLPDHIAHLCLSHVH---PS-ILHNVCHSWRRLIYSPSFPPFL   83 (387)
Q Consensus        39 ~~~~~~~LP~dl~~~iL~rLP---~~-~~r~Vck~W~~li~s~~f~~~~   83 (387)
                      ....+..||+||+++||+|||   +. ++++|||+|+.|++++.|++.+
T Consensus        47 ~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~   95 (297)
T 2e31_A           47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK   95 (297)
T ss_dssp             CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred             cccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence            356789999999999999999   77 9999999999999999986543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.47  E-value=2.1e-05  Score=68.37  Aligned_cols=151  Identities=23%  Similarity=0.253  Sum_probs=102.9

Q ss_pred             eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEE
Q 044903          190 AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYD  269 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD  269 (387)
                      +....++.+|+..|...      .+.+.++|+.+++    =...-+++...++   ...+..+++||++......+.+||
T Consensus        25 GL~~~~~~LyestG~~g------~S~v~~vD~~tgk----v~~~~~l~~~~fg---eGi~~~~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           25 GLFYLRGHLYESTGETG------RSSVRKVDLETGR----ILQRAEVPPPYFG---AGIVAWRDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             EEEEETTEEEEEECCTT------SCEEEEEETTTCC----EEEEEECCTTCCE---EEEEEETTEEEEEESSSSEEEEEE
T ss_pred             cEEEECCEEEEECCCCC------CceEEEEECCCCC----EEEEEeCCCCcce---eEEEEeCCEEEEEEeeCCEEEEEE
Confidence            44556789999988643      3478999999998    4444445544333   445667999999987778999999


Q ss_pred             CCCCcee-eccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE-cc--cccc-ccCceeEEEeCCeEEEEe
Q 044903          270 VVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE-VV--KSDL-LKGARHAAAGGGRVCAVC  344 (387)
Q Consensus       270 ~~~~~W~-~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~-v~--~~~~-~~~~~~~~~~~~~l~v~g  344 (387)
                      +++.+=. +++.. .   .+-.++..+++||+-.+ +++|.++|+++.+-.. +.  ..+. ....-.+...+|+||+-.
T Consensus        92 ~~tl~~~~ti~~~-~---~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv  166 (243)
T 3mbr_X           92 LATLTPRARFRYP-G---EGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV  166 (243)
T ss_dssp             TTTTEEEEEEECS-S---CCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             CCcCcEEEEEeCC-C---CceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence            9876432 33331 2   24466666788999886 7889999999865432 21  1111 122223445699999877


Q ss_pred             cCCceEEEEEecCC
Q 044903          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~v~d~~~~  358 (387)
                      ...+.|.++|+.++
T Consensus       167 w~s~~I~vIDp~tG  180 (243)
T 3mbr_X          167 WLTSRIARIDPASG  180 (243)
T ss_dssp             TTTTEEEEECTTTC
T ss_pred             CCCCeEEEEECCCC
Confidence            67889999999865

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.27  E-value=4.5e-05  Score=66.97  Aligned_cols=149  Identities=19%  Similarity=0.163  Sum_probs=98.6

Q ss_pred             EeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECC
Q 044903          192 GYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       192 ~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ...++.+|+..|...      .+.+.++|+++++    =...-+++...++   ...+..+++||+.......+.+||++
T Consensus        49 ~~~~~~LyestG~~g------~S~v~~vD~~Tgk----v~~~~~l~~~~Fg---eGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           49 FYRNGYFYESTGLNG------RSSIRKVDIESGK----TLQQIELGKRYFG---EGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEETTEEEEEEEETT------EEEEEEECTTTCC----EEEEEECCTTCCE---EEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             EEECCEEEEECCCCC------CceEEEEECCCCc----EEEEEecCCccce---eEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            344789999988632      3478999999998    4333344433222   33566789999998777899999998


Q ss_pred             CCce-eeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE-cccc--c-cccCceeEEEeCCeEEEEecC
Q 044903          272 ANTW-DDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE-VVKS--D-LLKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       272 ~~~W-~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~-v~~~--~-~~~~~~~~~~~~~~l~v~gg~  346 (387)
                      +.+= .+++. ...   +-.++..+++||+..+ ++.|+.+|+++.+-.. +...  + +....--+...+|+||+-...
T Consensus       116 t~~~~~ti~~-~~e---G~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~  190 (262)
T 3nol_A          116 NLRQVRSFNY-DGE---GWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ  190 (262)
T ss_dssp             TCCEEEEEEC-SSC---CCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred             cCcEEEEEEC-CCC---ceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence            7653 33333 123   3355666778898876 6789999999865333 2211  1 111111244458999988777


Q ss_pred             CceEEEEEecCC
Q 044903          347 GGGIVVVDVKAA  358 (387)
Q Consensus       347 ~~~i~v~d~~~~  358 (387)
                      ++.|.++|+.++
T Consensus       191 ~~~I~vIDp~tG  202 (262)
T 3nol_A          191 TNKIVRIDPETG  202 (262)
T ss_dssp             SSEEEEECTTTC
T ss_pred             CCeEEEEECCCC
Confidence            889999999865

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.24  E-value=0.00081  Score=58.38  Aligned_cols=193  Identities=10%  Similarity=-0.091  Sum_probs=120.1

Q ss_pred             eeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      ..+...++.||+..|...     .+.+.++|+.|++-..--+++..-...+.+..+++||++....        ..+.+|
T Consensus        24 qGL~~~~~~LyestG~~g-----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~--------~~v~v~   90 (243)
T 3mbr_X           24 EGLFYLRGHLYESTGETG-----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN--------HEGFVY   90 (243)
T ss_dssp             EEEEEETTEEEEEECCTT-----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS--------SEEEEE
T ss_pred             ccEEEECCEEEEECCCCC-----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC--------CEEEEE
Confidence            456677899999888432     3578999999998766444443333455677899999985443        388999


Q ss_pred             eCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCce-eeccc---cccCCCCCcEEEEeC
Q 044903          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW-DDMRE---GMVRGWRGPVAAMDE  295 (387)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~---~~~~~~~~~~~~~~~  295 (387)
                      |+.+-+      .+..++.+.   .....+.-+++||+..| ...+..+|+++.+= ..++.   +.+... -.-+...+
T Consensus        91 D~~tl~------~~~ti~~~~---~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~-lNeLe~~~  159 (243)
T 3mbr_X           91 DLATLT------PRARFRYPG---EGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDN-LNELEWVN  159 (243)
T ss_dssp             ETTTTE------EEEEEECSS---CCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCC-EEEEEEET
T ss_pred             ECCcCc------EEEEEeCCC---CceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCccccc-ceeeEEeC
Confidence            998866      222222221   22334444567888876 57899999988643 33321   111111 11234558


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceEE---cccccc-c------c--CceeEEEe--CCeEEEEecCCceEEEEEec
Q 044903          296 EVLYGIDENSCTLSKYDEVMDDWKE---VVKSDL-L------K--GARHAAAG--GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~W~~---v~~~~~-~------~--~~~~~~~~--~~~l~v~gg~~~~i~v~d~~  356 (387)
                      |+||+-...+..|.+-|+++.+=..   +..+.+ .      .  ..-+++-.  ++++||.|..=..++-+.+.
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            9999887667899999999876443   332211 1      1  12334433  67899887655666666655

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.24  E-value=0.00028  Score=62.43  Aligned_cols=197  Identities=5%  Similarity=-0.162  Sum_probs=118.3

Q ss_pred             eeEEEeC-CEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEE
Q 044903          140 VQLVSLS-GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       140 ~~~~~~~-~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      +.++..+ +.||+..|..     ..+.+.++|+.|++-..--+++......+.+..++++|+..-..        ..+.+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~-----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~--------~~v~v   90 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLY-----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK--------NIGFI   90 (266)
T ss_dssp             EEEEECSTTEEEEEECST-----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC--------SEEEE
T ss_pred             ccEEEeCCCeEEEECCCC-----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC--------CEEEE
Confidence            4455544 7899987621     23679999999998665333332222345566688999985432        37899


Q ss_pred             EeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc-eeeccccc-cCCC-CCcEEEEeC
Q 044903          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT-WDDMREGM-VRGW-RGPVAAMDE  295 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~-~~~~-~~~~~~~~~  295 (387)
                      ||+.+.+      .+..++.+ . ......+.-++++|+..+ ...+.++|+++.+ =..++.+. .... .-..+...+
T Consensus        91 iD~~t~~------v~~~i~~g-~-~~g~glt~Dg~~l~vs~g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~d  161 (266)
T 2iwa_A           91 YDRRTLS------NIKNFTHQ-M-KDGWGLATDGKILYGSDG-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYIN  161 (266)
T ss_dssp             EETTTTE------EEEEEECC-S-SSCCEEEECSSSEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred             EECCCCc------EEEEEECC-C-CCeEEEEECCCEEEEECC-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEEC
Confidence            9998765      22222222 0 111222333456887764 5799999998754 33333211 0010 011233448


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceEE---cccc-cc--------ccCceeEEEe--CCeEEEEecCCceEEEEEecCC
Q 044903          296 EVLYGIDENSCTLSKYDEVMDDWKE---VVKS-DL--------LKGARHAAAG--GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~W~~---v~~~-~~--------~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++||+-...++.|.+-|+++.+=..   +... +.        .....+++..  ++++||.|+....++++|....
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            8999887777899999998875333   3211 00        1122444443  5689999888999999999854

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.22  E-value=0.00049  Score=60.35  Aligned_cols=184  Identities=14%  Similarity=-0.007  Sum_probs=105.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.+|+...  .      ..+.+||+.++................+..-++++||.....        ..+.+||..+..
T Consensus        77 ~g~l~v~~~--~------~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~--------~~i~~~~~~~~~  140 (270)
T 1rwi_B           77 AGTVYVTDF--N------NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGN--------NRVVKLAAGSKT  140 (270)
T ss_dssp             TCCEEEEET--T------TEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGG--------TEEEEECTTCCS
T ss_pred             CCCEEEEcC--C------CEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCC--------CEEEEEECCCce
Confidence            567887654  1      468899998876655432211111111222267899875432        257778777665


Q ss_pred             cccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEEe-CCeEEEEe
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD-EEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~-~g~ly~~g  302 (387)
                          .......... ..   ...+. -+|++|+.......+.+||+....-.....   .+...+ .+++. +|.||+..
T Consensus       141 ----~~~~~~~~~~-~p---~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          141 ----QTVLPFTGLN-DP---DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             ----CEECCCCSCC-SC---CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEE
T ss_pred             ----eEeeccccCC-Cc---eeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEE
Confidence                4333211100 00   12222 257899886555789999988765433221   111122 33333 45899998


Q ss_pred             CCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCceEEEEEecC
Q 044903          303 ENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ...+.|.+||+++..-..... .......+++. -+|+||+....++.|.+|+...
T Consensus       210 ~~~~~v~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          210 HNTNQVVKLLAGSTTSTVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             TTTSCEEEECTTCSCCEECCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCCCcEEEEcCCCCcceeecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            777889999997764333221 11222334443 4678999977788999998874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.17  E-value=0.00068  Score=62.91  Aligned_cols=164  Identities=13%  Similarity=0.047  Sum_probs=97.6

Q ss_pred             CccEEEeCCCC--ceeeCCCCCCCc--------eeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEc
Q 044903          164 TRPLIFDPICR--TWTFGPELVTPR--------RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT  233 (387)
Q Consensus       164 ~~~~vydp~t~--~W~~l~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~  233 (387)
                      ..++.+|+.+.  .|+.-...+...        .....+..++.+|+.+..         ..+..+|+.+++..  |+.-
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~---------g~l~~~d~~tG~~~--w~~~  266 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN---------GNLTALDLRSGQIM--WKRE  266 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT---------SCEEEEETTTCCEE--EEEC
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC---------cEEEEEECCCCcEE--eecc
Confidence            35788999876  466532221111        123334567888886421         25788999888754  8764


Q ss_pred             CCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEE
Q 044903          234 GELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKY  311 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~y  311 (387)
                      .+-        ....+..++.+|+... ...+.+||+.++  .|+.-... ...  ..+.++.++.||+.. .++.++++
T Consensus       267 ~~~--------~~~~~~~~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~-~~~--~~~~~~~~~~l~v~~-~~g~l~~~  333 (376)
T 3q7m_A          267 LGS--------VNDFIVDGNRIYLVDQ-NDRVMALTIDGGVTLWTQSDLL-HRL--LTSPVLYNGNLVVGD-SEGYLHWI  333 (376)
T ss_dssp             CCC--------EEEEEEETTEEEEEET-TCCEEEEETTTCCEEEEECTTT-TSC--CCCCEEETTEEEEEC-TTSEEEEE
T ss_pred             CCC--------CCCceEECCEEEEEcC-CCeEEEEECCCCcEEEeecccC-CCc--ccCCEEECCEEEEEe-CCCeEEEE
Confidence            211        1335567899998753 347899999876  58764211 111  123345688888775 46789999


Q ss_pred             eCCCCc--eEEccccccccCceeEEEeCCeEEEEecCCceEEEEE
Q 044903          312 DEVMDD--WKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       312 d~~~~~--W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d  354 (387)
                      |+++.+  |+.-.  .........+..++.||+. ..++.+++||
T Consensus       334 d~~tG~~~~~~~~--~~~~~~~~~~~~~~~l~v~-~~~G~l~~~~  375 (376)
T 3q7m_A          334 NVEDGRFVAQQKV--DSSGFQTEPVAADGKLLIQ-AKDGTVYSIT  375 (376)
T ss_dssp             ETTTCCEEEEEEC--CTTCBCSCCEEETTEEEEE-BTTSCEEEEE
T ss_pred             ECCCCcEEEEEec--CCCcceeCCEEECCEEEEE-eCCCEEEEEe
Confidence            998765  54422  1111112234568888887 4556788776

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.16  E-value=0.00031  Score=61.59  Aligned_cols=194  Identities=7%  Similarity=-0.125  Sum_probs=115.8

Q ss_pred             eeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      ..+...++.||+..|...     .+.+.++|+.|.+-..--+++..-...+.+..+++||++...+        ..+.+|
T Consensus        46 qGL~~~~~~LyestG~~g-----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~--------~~v~v~  112 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG-----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN--------GLGFVW  112 (262)
T ss_dssp             EEEEEETTEEEEEEEETT-----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS--------SEEEEE
T ss_pred             ceEEEECCEEEEECCCCC-----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC--------CEEEEE
Confidence            345556889999888422     2578999999998765334432222344667799999995443        388999


Q ss_pred             eCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc-eeeccccc-cCCCCCc-EEEEeCC
Q 044903          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT-WDDMREGM-VRGWRGP-VAAMDEE  296 (387)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~-~~~~~~~-~~~~~~g  296 (387)
                      |+.+.+    =.  ..++.+.   .....+.-+++||+..| ...+..+|+++.+ -..++... ....... .+...+|
T Consensus       113 D~~t~~----~~--~ti~~~~---eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G  182 (262)
T 3nol_A          113 NIRNLR----QV--RSFNYDG---EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDG  182 (262)
T ss_dssp             ETTTCC----EE--EEEECSS---CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETT
T ss_pred             ECccCc----EE--EEEECCC---CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECC
Confidence            999877    22  2222211   11333333556787765 5789999998754 33333211 0011111 2344589


Q ss_pred             eEEEEeCCCCeEEEEeCCCCceEEccccc---c-c-------cCceeEEEe--CCeEEEEecCCceEEEEEec
Q 044903          297 VLYGIDENSCTLSKYDEVMDDWKEVVKSD---L-L-------KGARHAAAG--GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       297 ~ly~~g~~~~~v~~yd~~~~~W~~v~~~~---~-~-------~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +||+-...++.|.+-|+++.+=...-..+   + .       ....+++-.  ++++||.|..=..++-+.+.
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            99988777789999999988654433221   1 1       112334433  57888886555666655554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.10  E-value=0.00023  Score=62.45  Aligned_cols=148  Identities=9%  Similarity=-0.017  Sum_probs=97.8

Q ss_pred             eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEE
Q 044903          190 AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYD  269 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD  269 (387)
                      +....++.+|+..|...        .+.++|+++++..   ..+  ++...++   ...+..+++||+.......+.+||
T Consensus        59 GL~~~~~~Ly~stG~~g--------~v~~iD~~Tgkv~---~~~--l~~~~Fg---eGit~~g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           59 GLVFHQGHFFESTGHQG--------TLRQLSLESAQPV---WME--RLGNIFA---EGLASDGERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEEETTEEEEEETTTT--------EEEECCSSCSSCS---EEE--ECTTCCE---EEEEECSSCEEEEESSSCEEEEEE
T ss_pred             eEEEECCEEEEEcCCCC--------EEEEEECCCCcEE---eEE--CCCCcce---eEEEEeCCEEEEEEccCCEEEEEE
Confidence            34455789999988644        3889999999832   222  3332222   335567889999987778999999


Q ss_pred             CCCCce-eeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE-cc--ccccc-cCceeEEEeCCeEEEEe
Q 044903          270 VVANTW-DDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE-VV--KSDLL-KGARHAAAGGGRVCAVC  344 (387)
Q Consensus       270 ~~~~~W-~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~-v~--~~~~~-~~~~~~~~~~~~l~v~g  344 (387)
                      +++.+= .+++. ...+   -.++..+++||+..+ ++.|..+|+++.+-.. +.  ..+.. ...-.+...+|+||+-.
T Consensus       123 ~~Tl~~~~ti~~-~~eG---wGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv  197 (268)
T 3nok_A          123 GMPPQRERTTRY-SGEG---WGLCYWNGKLVRSDG-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI  197 (268)
T ss_dssp             TTTTEEEEEEEC-SSCC---CCEEEETTEEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             CCcCcEEEEEeC-CCce---eEEecCCCEEEEECC-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE
Confidence            987643 33433 2333   355667888999876 7899999999865433 21  11111 11122444589999876


Q ss_pred             cCCceEEEEEecCC
Q 044903          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~v~d~~~~  358 (387)
                      ..++.|.++|+.++
T Consensus       198 w~s~~I~vIDp~TG  211 (268)
T 3nok_A          198 WHSSDVLEIDPATG  211 (268)
T ss_dssp             TTCSEEEEECTTTC
T ss_pred             CCCCeEEEEeCCCC
Confidence            67889999999865

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.09  E-value=0.00052  Score=60.66  Aligned_cols=151  Identities=20%  Similarity=0.175  Sum_probs=96.8

Q ss_pred             EEeeC-CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEE
Q 044903          191 AGYSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYD  269 (387)
Q Consensus       191 ~~~~~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD  269 (387)
                      ....+ +.+|+..|...      .+.+.++|+.+++    =...-+++...++   ...+..++++|+.......+.+||
T Consensus        26 l~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~----v~~~i~l~~~~fg---eGi~~~g~~lyv~t~~~~~v~viD   92 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYG------RSSVRQVALQTGK----VENIHKMDDSYFG---EGLTLLNEKLYQVVWLKNIGFIYD   92 (266)
T ss_dssp             EEECSTTEEEEEECSTT------TCEEEEEETTTCC----EEEEEECCTTCCE---EEEEEETTEEEEEETTCSEEEEEE
T ss_pred             EEEeCCCeEEEECCCCC------CCEEEEEECCCCC----EEEEEecCCCcce---EEEEEeCCEEEEEEecCCEEEEEE
Confidence            33334 79999877421      2479999999998    4333233322221   334556889999987778999999


Q ss_pred             CCCCc-eeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE-cc--ccc-cccCceeEEEeCCeEEEEe
Q 044903          270 VVANT-WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE-VV--KSD-LLKGARHAAAGGGRVCAVC  344 (387)
Q Consensus       270 ~~~~~-W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~-v~--~~~-~~~~~~~~~~~~~~l~v~g  344 (387)
                      +++.+ =.+++.+.+.   +..++..++++|+..+ ++.+.++|+++.+=.. +.  ..+ +......+...+|+||+-.
T Consensus        93 ~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~  168 (266)
T 2iwa_A           93 RRTLSNIKNFTHQMKD---GWGLATDGKILYGSDG-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI  168 (266)
T ss_dssp             TTTTEEEEEEECCSSS---CCEEEECSSSEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEECCCCC---eEEEEECCCEEEEECC-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence            98653 2233322223   3456666778998874 7799999998864332 22  111 1112233444489999887


Q ss_pred             cCCceEEEEEecCC
Q 044903          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~v~d~~~~  358 (387)
                      ..++.|.++|+.+.
T Consensus       169 ~~~~~V~vID~~tg  182 (266)
T 2iwa_A          169 WQTDCIARISAKDG  182 (266)
T ss_dssp             TTSSEEEEEETTTC
T ss_pred             CCCCeEEEEECCCC
Confidence            77889999999854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.09  E-value=0.00025  Score=65.90  Aligned_cols=179  Identities=18%  Similarity=0.118  Sum_probs=100.1

Q ss_pred             EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-C-CEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-R-GAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      .+|+.++.+       ..+.+||..+++-...-.....  ..+.+.. + ..+|+.++.+.        .+.+||..+++
T Consensus         3 ~l~vs~~~d-------~~v~v~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~--------~i~v~d~~~~~   65 (391)
T 1l0q_A            3 FAYIANSES-------DNISVIDVTSNKVTATIPVGSN--PMGAVISPDGTKVYVANAHSN--------DVSIIDTATNN   65 (391)
T ss_dssp             EEEEEETTT-------TEEEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEEEEEGGGT--------EEEEEETTTTE
T ss_pred             EEEEEcCCC-------CEEEEEECCCCeEEEEeecCCC--cceEEECCCCCEEEEECCCCC--------eEEEEECCCCe
Confidence            456665532       4688899988765442221111  1122222 3 35777765433        78899998887


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEE--CC-EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe--CCeEEE
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGW--KG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~--~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~  300 (387)
                          -...-..+..      ...+.+  +| .||+.+.....+.+||+.+++-...-.   .......++..  +..||+
T Consensus        66 ----~~~~~~~~~~------v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           66 ----VIATVPAGSS------PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---TGKSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             ----EEEEEECSSS------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEE
T ss_pred             ----EEEEEECCCC------ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---CCCCcceEEECCCCCEEEE
Confidence                4333222221      222222  34 466665555789999998875533221   11111233332  335778


Q ss_pred             EeCCCCeEEEEeCCCCceEEccccccccCceeEE-EeCC-eEEEEecCCceEEEEEecCC
Q 044903          301 IDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~-~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+..++.|++||..+.+.......  ......++ ..++ .|++.+..++.+.+||+.+.
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~  190 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EeCCCCEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            887789999999988765543221  12222222 2244 56677667788999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.03  E-value=0.00059  Score=63.33  Aligned_cols=179  Identities=15%  Similarity=0.079  Sum_probs=98.2

Q ss_pred             EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      .+|+.++.+       ..+.+||..+++....-....  .-...+..  +..||+.+..+        ..+.+||..+++
T Consensus        45 ~l~~~~~~d-------~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~--------~~v~v~d~~~~~  107 (391)
T 1l0q_A           45 KVYVANAHS-------NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNT  107 (391)
T ss_dssp             EEEEEEGGG-------TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE
T ss_pred             EEEEECCCC-------CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCC--------CEEEEEECCCCe
Confidence            466665432       468899998887654322222  11122222  34566665432        268999999887


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEE--CC-EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe--CCeEEE
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGW--KG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~--~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~  300 (387)
                          -...-.....      ...+.+  +| .+|+.+.....+.+||+.+.+....-..   +.....++..  ++.||+
T Consensus       108 ----~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          108 ----VAGTVKTGKS------PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---GRSPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             ----EEEEEECSSS------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEE
T ss_pred             ----EEEEEeCCCC------cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---CCCcceEEECCCCCEEEE
Confidence                4333222111      122222  44 4767766668999999988765433211   1111223322  346777


Q ss_pred             EeCCCCeEEEEeCCCCceEEccccccccCceeE-EEeCCe-EEEEec--CCceEEEEEecCC
Q 044903          301 IDENSCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGGR-VCAVCE--NGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~-l~v~gg--~~~~i~v~d~~~~  358 (387)
                      .+..++.|.+||..+.+-.....  .......+ ...+|+ |++.+.  .+..+.+||+.+.
T Consensus       175 ~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          175 ANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             EeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            87778899999998875443322  11112222 223454 444433  5688999998754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.02  E-value=0.0018  Score=60.05  Aligned_cols=198  Identities=10%  Similarity=0.061  Sum_probs=113.7

Q ss_pred             eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCC-------CCceeeeEEeeCCEEEEEecCCCCCCCC
Q 044903          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELV-------TPRRWCAAGYSRGAVYVASGIGSQFSSD  211 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~-------~~r~~~~~~~~~~~iyv~GG~~~~~~~~  211 (387)
                      ..++.++.||+....        ..++.||+.|.  .|+.-.+..       ........+..++.||+....       
T Consensus        48 ~p~v~~~~v~~~~~~--------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-------  112 (376)
T 3q7m_A           48 HPALADNVVYAADRA--------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-------  112 (376)
T ss_dssp             CCEEETTEEEEECTT--------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-------
T ss_pred             ccEEECCEEEEEcCC--------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-------
Confidence            455678889887541        36889999876  476532211       122234455678889886432       


Q ss_pred             CCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCC-CC
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGW-RG  288 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~-~~  288 (387)
                        ..+..+|..+++..  |+.-..-.  .    ....+..++.+|+... ...+.+||++++  .|+.-........ ..
T Consensus       113 --g~l~a~d~~tG~~~--W~~~~~~~--~----~~~p~~~~~~v~v~~~-~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          113 --AQVYALNTSDGTVA--WQTKVAGE--A----LSRPVVSDGLVLIHTS-NGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             --SEEEEEETTTCCEE--EEEECSSC--C----CSCCEEETTEEEEECT-TSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             --CEEEEEECCCCCEE--EEEeCCCc--e----EcCCEEECCEEEEEcC-CCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence              26899999988855  87643211  1    1234566888887543 347999999876  5876543221111 11


Q ss_pred             cEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceEEcccccccc--------CceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          289 PVAAMDEEVLYGIDENSCTLSKYDEVMD--DWKEVVKSDLLK--------GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       289 ~~~~~~~g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~~~~--------~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+.++.++.+|+ +..++.+..+|+++.  .|+.-...+...        .....+..++.||+. ..++.++.+|..++
T Consensus       182 ~~~~~~~~~v~~-g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~-~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          182 SAPTTAFGAAVV-GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL-AYNGNLTALDLRSG  259 (376)
T ss_dssp             CCCEEETTEEEE-CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE-CTTSCEEEEETTTC
T ss_pred             CCcEEECCEEEE-EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE-ecCcEEEEEECCCC
Confidence            233445777766 445678999998754  576533221100        112233456777766 34567788887632


Q ss_pred             CCCceeEEcC
Q 044903          359 AAPTIFVVDT  368 (387)
Q Consensus       359 ~~~~~W~~~~  368 (387)
                        ...|+...
T Consensus       260 --~~~w~~~~  267 (376)
T 3q7m_A          260 --QIMWKREL  267 (376)
T ss_dssp             --CEEEEECC
T ss_pred             --cEEeeccC
Confidence              24577643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.01  E-value=0.0007  Score=59.32  Aligned_cols=191  Identities=12%  Similarity=-0.013  Sum_probs=104.3

Q ss_pred             eeEEE-eCCEEEE-EcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEE
Q 044903          140 VQLVS-LSGKLIL-LAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVE  217 (387)
Q Consensus       140 ~~~~~-~~~~l~v-~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  217 (387)
                      ..++. -++.+|+ ....       ...+.+||+.+......+..........+..-++++||... .        ..+.
T Consensus        27 ~~i~~~~~g~l~v~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~--------~~i~   90 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEGM-------YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-N--------NRVV   90 (270)
T ss_dssp             EEEEECTTCCEEEEECSS-------SCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-T--------TEEE
T ss_pred             cceEECCCCCEEEEccCC-------CCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-C--------CEEE
Confidence            34444 3567888 4331       24678899887765554322111111112222567998865 2        2678


Q ss_pred             EEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-
Q 044903          218 KWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-  294 (387)
Q Consensus       218 vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-  294 (387)
                      +||+.+..    ...+......     ....+.+  +|++|+.......+.+||..+......... ... ....+++. 
T Consensus        91 ~~d~~~~~----~~~~~~~~~~-----~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~p~~i~~~~  159 (270)
T 1rwi_B           91 TLAAGSNN----QTVLPFDGLN-----YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLN-DPDGVAVDN  159 (270)
T ss_dssp             EECTTCSC----CEECCCCSCS-----SEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCC-SCCCEEECT
T ss_pred             EEeCCCce----EeeeecCCcC-----CCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCC-CceeEEEeC
Confidence            89988776    4444311101     1122233  678998765556788998766554332211 000 11233433 


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +|+||+.+...+.|.+||+++..-...... .......++. -+|.||+....++.+.++|....
T Consensus       160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CCCEEEEECCCCEEEEEecCCCceEeeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            578999886678899999987654332211 1122334444 35689998777788999998743

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.01  E-value=0.0011  Score=58.65  Aligned_cols=188  Identities=11%  Similarity=0.016  Sum_probs=103.7

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      .++.+|+.+...      ...+.+||+..+.-..+...........+..-++++||.....        ..+.+||+...
T Consensus        87 ~~g~l~v~~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~~~~g~  152 (286)
T 1q7f_A           87 NSGDIIVTERSP------THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV--------MRVIIFDQNGN  152 (286)
T ss_dssp             TTTEEEEEECGG------GCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT--------TEEEEECTTSC
T ss_pred             CCCeEEEEcCCC------CCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCC--------CEEEEEcCCCC
Confidence            367888876421      1467889965544333322111111222222357899876432        26788887655


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEE-eCCeEEE
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAM-DEEVLYG  300 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~-~~g~ly~  300 (387)
                      .    ...+......    .....+.+  +|.+|+.+.....+.+||+..+.-..+...  .....+ .+++ .+|+||+
T Consensus       153 ~----~~~~~~~~~~----~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--g~~~~p~~i~~d~~G~l~v  222 (286)
T 1q7f_A          153 V----LHKFGCSKHL----EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE--GITNYPIGVGINSNGEILI  222 (286)
T ss_dssp             E----EEEEECTTTC----SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT--TTSCSEEEEEECTTCCEEE
T ss_pred             E----EEEeCCCCcc----CCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccC--CccCCCcEEEECCCCCEEE
Confidence            4    3333211100    01122333  589998866567899999866544443321  001122 2333 3578999


Q ss_pred             EeCCCC-eEEEEeCCCCceEEccccccccCceeEE-EeCCeEEEEecCCceEEEEEecC
Q 044903          301 IDENSC-TLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       301 ~g~~~~-~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .+...+ .|.+||++...-..+...........++ .-+|++||.. .++.|.+|+...
T Consensus       223 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~~~~v~v~~~~~  280 (286)
T 1q7f_A          223 ADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS-KDYRLYIYRYVQ  280 (286)
T ss_dssp             EECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEEEEEECSC
T ss_pred             EeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEEC-CCCeEEEEEccc
Confidence            986665 8999998766444443322122223333 3478998884 577899998874

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.01  E-value=0.003  Score=57.42  Aligned_cols=187  Identities=13%  Similarity=-0.024  Sum_probs=99.3

Q ss_pred             CEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCC--------CceeeeEEe--eCCEEEEEecCCCCCCCCCCceE
Q 044903          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT--------PRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~--------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v  216 (387)
                      +.+|+.+..       ...++++|+.+.+-...-+...        +......+.  .++.+|+.+....       ..+
T Consensus       101 ~~l~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-------~~i  166 (353)
T 3vgz_A          101 QTLWFGNTV-------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-------SVI  166 (353)
T ss_dssp             TEEEEEETT-------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-------CEE
T ss_pred             CEEEEEecC-------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-------ceE
Confidence            447776552       1478999999887533211111        111112222  2456887763221       368


Q ss_pred             EEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC-EEEEEeeeCCeEEEEECCCCceee-ccccccCCCC-Cc-EEE
Q 044903          217 EKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTWDD-MREGMVRGWR-GP-VAA  292 (387)
Q Consensus       217 ~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~~~~-~~-~~~  292 (387)
                      .+||+.+.+    -...-+......   ...+..-+| .+|+.+. ...+.+||+.+.+-.. +.. ...+.. .. .++
T Consensus       167 ~~~d~~~~~----~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~  237 (353)
T 3vgz_A          167 WVVDGGNIK----LKTAIQNTGKMS---TGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKL-LDDGKEHFFINIS  237 (353)
T ss_dssp             EEEETTTTE----EEEEECCCCTTC---CCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEEC-CCSSSCCCEEEEE
T ss_pred             EEEcCCCCc----eEEEecCCCCcc---ceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEc-CCCCCCcccceEE
Confidence            999998876    222211111100   011222344 4666543 5688899998764322 111 011111 11 233


Q ss_pred             Ee--CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCC-eEEEEecCCceEEEEEecCC
Q 044903          293 MD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~-~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.  ++.+|+.....+.+.+||+++.+.......+..  ......-+| .+|+.+..++.+.++|..+.
T Consensus       238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            32  556888877678999999988765443332221  222233344 58888767889999998754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.97  E-value=0.0015  Score=59.95  Aligned_cols=191  Identities=13%  Similarity=0.062  Sum_probs=108.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--C--CEEEEEecCCCCCCCCCCceEEEEeC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--R--GAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~v~vyd~  221 (387)
                      ++..++.|+.+       ..+.+||.....+..+..+........+..+  +  +.+++.|+.+.        .+.+||.
T Consensus        22 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKE   86 (379)
T ss_dssp             SSSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEECC-------CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC--------EEEEEEc
Confidence            45566666532       3578888876666554333322222222222  2  56667766543        6889999


Q ss_pred             CCCccccCeEEcCCCCCCcccccceeEEEE--C--CEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe---
Q 044903          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---  294 (387)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~--g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---  294 (387)
                      .+++    |..+..+.....   ....+.+  +  +.+.+.++....+.+||..+..-............-.+++..   
T Consensus        87 ~~~~----~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           87 ENGR----WSQIAVHAVHSA---SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             ETTE----EEEEEEECCCSS---CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             CCCc----eeEeeeecCCCc---ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            9887    776654432211   1233333  2  567777777788999999876322111000001011122222   


Q ss_pred             -----------CCeEEEEeCCCCeEEEEeCCCC--ceEEccccccccCceeEEE--eC---CeEEEEecCCceEEEEEec
Q 044903          295 -----------EEVLYGIDENSCTLSKYDEVMD--DWKEVVKSDLLKGARHAAA--GG---GRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 -----------~g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~--~~---~~l~v~gg~~~~i~v~d~~  356 (387)
                                 ++.+++.++.++.|.+||..+.  .|..+............+.  .+   +++++.++.++.+.+||+.
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                       4677778878899999998654  3555544443333332222  34   7888888888999999998


Q ss_pred             CC
Q 044903          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      ..
T Consensus       240 ~~  241 (379)
T 3jrp_A          240 NE  241 (379)
T ss_dssp             ST
T ss_pred             CC
Confidence            54

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.93  E-value=0.0037  Score=55.24  Aligned_cols=182  Identities=7%  Similarity=-0.008  Sum_probs=102.9

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-CCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.+|+....       ...+++||+. .+.+... ++ ....-...+.. ++++|+....+        ..+.+||+ 
T Consensus        66 ~~g~l~v~~~~-------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~d~-  127 (299)
T 2z2n_A           66 SDGEVWFTENA-------ANKIGRITKK-GIIKEYT-LPNPDSAPYGITEGPNGDIWFTEMNG--------NRIGRITD-  127 (299)
T ss_dssp             TTSCEEEEETT-------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETTT--------TEEEEECT-
T ss_pred             CCCCEEEeCCC-------CCeEEEECCC-CcEEEEe-CCCcCCCceeeEECCCCCEEEEecCC--------ceEEEECC-
Confidence            36678876532       1357888886 4554432 11 11111222222 57899875432        26788888 


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEEe-CCeE
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD-EEVL  298 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~-~g~l  298 (387)
                      +++    ...... +....   ......+  +|.+|+.......+..||+ +++......  +.....+ .+++. +|+|
T Consensus       128 ~g~----~~~~~~-~~~~~---~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l  196 (299)
T 2z2n_A          128 DGK----IREYEL-PNKGS---YPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI--PTPASGPVGITKGNDDAL  196 (299)
T ss_dssp             TCC----EEEEEC-SSTTC---CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECTTSSE
T ss_pred             CCC----EEEecC-CCCCC---CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC--CCCCCcceeEEECCCCCE
Confidence            555    544321 11110   1222233  5789887544468999999 676665421  1111122 33332 4789


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCceEEEEEec
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      |+.....+.|.+||+ +.+...+...........++. -+|+||+....++.+.++|+.
T Consensus       197 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          197 WFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             EEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            998766788999999 666665432212223344443 367888886567889999984

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.93  E-value=0.0025  Score=55.90  Aligned_cols=190  Identities=11%  Similarity=-0.026  Sum_probs=113.4

Q ss_pred             ceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEE
Q 044903          139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      ...+...++.||+..|...       .+.++|+.|++-..-- ++..-...+.+..+++||++...+        ..+.+
T Consensus        57 tqGL~~~~~~Ly~stG~~g-------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~--------~~v~V  120 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQG-------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE--------GLLFT  120 (268)
T ss_dssp             EEEEEEETTEEEEEETTTT-------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS--------CEEEE
T ss_pred             cceEEEECCEEEEEcCCCC-------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC--------CEEEE
Confidence            3456667899999988432       3889999998765422 332222334667789999985433        38899


Q ss_pred             EeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCce-eeccccc-cCCC-CCcEEEEeC
Q 044903          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW-DDMREGM-VRGW-RGPVAAMDE  295 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~-~~~~-~~~~~~~~~  295 (387)
                      ||+.+.+    =  +..++.+.   .....+.-+++||+..| ...+..+|+++.+= ..++... +... .-.-+...+
T Consensus       121 ~D~~Tl~----~--~~ti~~~~---eGwGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~d  190 (268)
T 3nok_A          121 WSGMPPQ----R--ERTTRYSG---EGWGLCYWNGKLVRSDG-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECAN  190 (268)
T ss_dssp             EETTTTE----E--EEEEECSS---CCCCEEEETTEEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred             EECCcCc----E--EEEEeCCC---ceeEEecCCCEEEEECC-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeC
Confidence            9999876    2  22222211   22344455778888875 57999999988643 2332111 0010 011234458


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceEE---cccccc-c--------cCceeEEEe--CCeEEEEecCCceEEEEE
Q 044903          296 EVLYGIDENSCTLSKYDEVMDDWKE---VVKSDL-L--------KGARHAAAG--GGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~W~~---v~~~~~-~--------~~~~~~~~~--~~~l~v~gg~~~~i~v~d  354 (387)
                      |+||+-...++.|.+-|+++.+=..   +..+.+ .        ...-+++-.  ++++||.|..=..++-+.
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            8999877667899999999886443   332210 0        112334433  578888865545555443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.88  E-value=0.0017  Score=61.48  Aligned_cols=190  Identities=13%  Similarity=0.089  Sum_probs=110.4

Q ss_pred             eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd  220 (387)
                      .+...++.+++.|+.+       ..+.+||..+.+-...  +........+...++..++.|+.+.        .+.+||
T Consensus       177 ~~l~~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg--------~i~vwd  239 (435)
T 1p22_A          177 LCLQYDERVIITGSSD-------STVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKDR--------SIAVWD  239 (435)
T ss_dssp             EEEECCSSEEEEEETT-------SCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETTS--------CEEEEE
T ss_pred             EEEEECCCEEEEEcCC-------CeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCCC--------cEEEEe
Confidence            3444577777777643       4678899987764331  1111122223334555666666543        678888


Q ss_pred             CCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEE
Q 044903          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYG  300 (387)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~  300 (387)
                      ..+...   ......+...   .....++..++...+.|+.+..+.+||..+.+-...-....   .....+..++.+++
T Consensus       240 ~~~~~~---~~~~~~~~~~---~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~  310 (435)
T 1p22_A          240 MASPTD---ITLRRVLVGH---RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---RGIACLQYRDRLVV  310 (435)
T ss_dssp             CSSSSC---CEEEEEECCC---SSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTEEE
T ss_pred             CCCCCC---ceeeeEecCC---CCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC---CcEEEEEeCCCEEE
Confidence            887651   1110101100   11133455577777777777889999998764322111111   11222333566777


Q ss_pred             EeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          301 IDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .++.++.|.+||..+.+  .+...........++..+++.++.|+.++.+.+||+...
T Consensus       311 ~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          311 SGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             EEETTSCEEEEETTTCC--EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             EEeCCCeEEEEECCCCC--EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCC
Confidence            77788999999998753  222333333444555668888999888999999998643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.85  E-value=0.0022  Score=60.79  Aligned_cols=173  Identities=13%  Similarity=0.144  Sum_probs=92.1

Q ss_pred             ccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccccc
Q 044903          165 RPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~  244 (387)
                      .+.+||..+.+-..  .+........+...++..++.|+.+.        .+.+||..+.+    -...-....     .
T Consensus       260 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~----~~~~~~~~~-----~  320 (445)
T 2ovr_B          260 MVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDT--------SIRVWDVETGN----CIHTLTGHQ-----S  320 (445)
T ss_dssp             CEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTS--------CEEEEETTTCC----EEEEECCCC-----S
T ss_pred             EEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCCC--------eEEEEECCCCC----EEEEEcCCc-----c
Confidence            45667766543222  11111111222333666666666543        68899988876    222111111     1


Q ss_pred             ceeEEEECCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcc-
Q 044903          245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVV-  322 (387)
Q Consensus       245 ~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~-  322 (387)
                      ...+...++.+.+.|+.+..+.+||..+.+-. .+.. ..........+..++.+++.++.++.|.+||..+.+..... 
T Consensus       321 ~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  399 (445)
T 2ovr_B          321 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV  399 (445)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECS-TTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEcc-CCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeee
Confidence            13344456666677777788999999766432 2211 11011112223345677777778899999999887654322 


Q ss_pred             cc--ccccCc-eeEE-EeCCeEEEEecCCc----eEEEEEecC
Q 044903          323 KS--DLLKGA-RHAA-AGGGRVCAVCENGG----GIVVVDVKA  357 (387)
Q Consensus       323 ~~--~~~~~~-~~~~-~~~~~l~v~gg~~~----~i~v~d~~~  357 (387)
                      ..  ...... .+++ ..++.++++|+.++    .+.++|...
T Consensus       400 ~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          400 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            11  112222 2233 23556666766554    499999884

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.83  E-value=0.0057  Score=53.69  Aligned_cols=184  Identities=7%  Similarity=-0.073  Sum_probs=107.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++.||+....       ...++++|+.+..-..+.+...... ...+.  .++.||++...        ...+.++|+..
T Consensus        47 ~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~p-~~ia~d~~~~~lyv~d~~--------~~~I~~~~~~g  110 (267)
T 1npe_A           47 DKVVYWTDIS-------EPSIGRASLHGGEPTTIIRQDLGSP-EGIALDHLGRTIFWTDSQ--------LDRIEVAKMDG  110 (267)
T ss_dssp             TTEEEEEETT-------TTEEEEEESSSCCCEEEECTTCCCE-EEEEEETTTTEEEEEETT--------TTEEEEEETTS
T ss_pred             CCEEEEEECC-------CCEEEEEecCCCCcEEEEECCCCCc-cEEEEEecCCeEEEEECC--------CCEEEEEEcCC
Confidence            5788887542       2578999998765433221111111 22222  36799998543        23788888875


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeee--CCeEEEEECCCCceeeccccccCCCCCc-EEEEe--CC
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVK--GAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD--EE  296 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~--~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~--~g  296 (387)
                      ..    -+.+...... .+   ...++-  ++.||+....  ...+.++++....-+.+..   .+...+ .+++.  ++
T Consensus       111 ~~----~~~~~~~~~~-~P---~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~---~~~~~P~gia~d~~~~  179 (267)
T 1npe_A          111 TQ----RRVLFDTGLV-NP---RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ---DNLGLPNGLTFDAFSS  179 (267)
T ss_dssp             CS----CEEEECSSCS-SE---EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC---TTCSCEEEEEEETTTT
T ss_pred             CC----EEEEEECCCC-Cc---cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE---CCCCCCcEEEEcCCCC
Confidence            54    3333211101 11   222332  6899998654  3578888886543232221   111122 23332  57


Q ss_pred             eEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          297 VLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +||+.....+.|.++|+++..-..+..  ....+.+++..++.||+....++.+.++|..++
T Consensus       180 ~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          180 QLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             EEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEeCCEEEEEECCCCeEEEEeCCCC
Confidence            899998777899999997643222221  223345666678999999777889999999854

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.81  E-value=0.002  Score=57.05  Aligned_cols=187  Identities=11%  Similarity=0.089  Sum_probs=104.4

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC--CC--ceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEE
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV--TP--RRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~--~~--r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      .++.+|+.....       ..+.+||+..+....++...  ..  ..-...+.  -++++||.+....       ..+.+
T Consensus        39 ~~g~l~v~~~~~-------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~-------~~i~~  104 (286)
T 1q7f_A           39 AQNDIIVADTNN-------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-------HQIQI  104 (286)
T ss_dssp             TTCCEEEEEGGG-------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-------CEEEE
T ss_pred             CCCCEEEEECCC-------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC-------CEEEE
Confidence            356788875421       46788998855444433211  00  11122333  3678999864311       26788


Q ss_pred             EeCCCCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEEe-
Q 044903          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD-  294 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~-  294 (387)
                      ||.....    -..+......     ....+.  -+|++|+.+.....+.+||+....-..+...  .....+ .+++. 
T Consensus       105 ~d~~g~~----~~~~~~~~~~-----~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~p~~i~~~~  173 (286)
T 1q7f_A          105 YNQYGQF----VRKFGATILQ-----HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--KHLEFPNGVVVND  173 (286)
T ss_dssp             ECTTSCE----EEEECTTTCS-----CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--TTCSSEEEEEECS
T ss_pred             ECCCCcE----EEEecCccCC-----CceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC--CccCCcEEEEECC
Confidence            8855443    3333211111     012222  3678998865557899999876544443211  111122 23332 


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCc-eEEEEEec
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGG-GIVVVDVK  356 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~-~i~v~d~~  356 (387)
                      +|++|+.+...+.|.+||++.+....+...........++. -+|+|||....++ .+.+||..
T Consensus       174 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          174 KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            47899988767899999997765444433222223333443 4788999876665 89999876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.81  E-value=0.0057  Score=54.03  Aligned_cols=183  Identities=8%  Similarity=-0.032  Sum_probs=103.2

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      .++.+|+....       ...+.+||+. +++...............+. -++++|+.....        ..+..||+. 
T Consensus        71 ~~g~l~v~~~~-------~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~~~~-  133 (300)
T 2qc5_A           71 SLGDIWFTENG-------ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG--------DRIGKLTAD-  133 (300)
T ss_dssp             TTSCEEEEETT-------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTT--------TEEEEECTT-
T ss_pred             CCCCEEEEecC-------CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCC--------CeEEEECCC-
Confidence            35678886431       2468899988 66654321111111222222 367899875432        267888887 


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEEe-CCeEE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD-EEVLY  299 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~-~g~ly  299 (387)
                      ++    ..... ++....   ....+.  -+|++|+.......+..||+ +++......  +.....+ .+++. +|.||
T Consensus       134 g~----~~~~~-~~~~~~---~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~d~~g~l~  202 (300)
T 2qc5_A          134 GT----IYEYD-LPNKGS---YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPL--PTNAAAPVGITSGNDGALW  202 (300)
T ss_dssp             SC----EEEEE-CSSTTC---CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECTTSSEE
T ss_pred             CC----EEEcc-CCCCCC---CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeC--CCCCCCcceEEECCCCCEE
Confidence            55    54332 121111   112222  35788887644568999998 666655431  1111222 23332 57899


Q ss_pred             EEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCceEEEEEec
Q 044903          300 GIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +.....+.|.+||+ +..+..+...........++. -+|+||+....++.+..+|+.
T Consensus       203 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          203 FVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            98766778999999 555655432222222334443 367899887667889999885

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.80  E-value=0.01  Score=55.52  Aligned_cols=184  Identities=10%  Similarity=-0.033  Sum_probs=111.0

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC--CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP--ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.||+..-.       ...++++++.....+.+.  .+..+. ..+....+++||+.-...        ..++++++.
T Consensus       126 ~~~~ly~~D~~-------~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~--------~~I~~~~~d  189 (386)
T 3v65_B          126 RRELVFWSDVT-------LDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGT--------SRIEVANLD  189 (386)
T ss_dssp             TTTEEEEEETT-------TTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTT--------TEEEECBTT
T ss_pred             CCCeEEEEeCC-------CCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCC--------CeEEEEeCC
Confidence            36788887532       257889999887665542  222222 122223478999985432        367888876


Q ss_pred             CCccccCeEEcC--CCCCCcccccceeEEE--ECCEEEEEeeeC-CeEEEEECCCCceeec-cccccCCCCCcEEEE--e
Q 044903          223 NGEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVYDVVANTWDDM-REGMVRGWRGPVAAM--D  294 (387)
Q Consensus       223 t~~~~~~W~~~~--~~~~~~~~~~~~~~v~--~~g~lyv~gg~~-~~i~~yD~~~~~W~~~-~~~~~~~~~~~~~~~--~  294 (387)
                      ...    -..+.  .+..|      ...++  .+|.||+..... ..|+.+|+....=+.+ ...+..   ...+++  .
T Consensus       190 g~~----~~~l~~~~l~~P------~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~---PnGlavd~~  256 (386)
T 3v65_B          190 GAH----RKVLLWQSLEKP------RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW---PNGLTIDYA  256 (386)
T ss_dssp             SCS----CEEEECSSCSCE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC---EEEEEEEGG
T ss_pred             CCc----eEEeecCCCCCC------cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC---eeeEEEeCC
Confidence            554    33322  12211      22233  268999986544 7899999875433222 121111   123444  4


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++||+.+...+.|+++|.+...=+.+... ....+.+++..++.||+....+..|..+|..++
T Consensus       257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          257 GRRMYWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             GTEEEEEETTTTEEEEECTTSCSCEEEECS-SCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEECCCCEEEEEeCCCCeeEEEEEC-CCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence            789999998788999999876433333221 133456777789999999877889999995434

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.77  E-value=0.024  Score=52.15  Aligned_cols=184  Identities=10%  Similarity=-0.024  Sum_probs=112.0

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC--CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP--ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.||+..-.       ...++++++.....+.+.  .+..+. ..+....+++||+.-..        ...++++++.
T Consensus        83 ~~~~ly~~D~~-------~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~--------~~~I~~~~~d  146 (349)
T 3v64_C           83 RRELVFWSDVT-------LDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSG--------TSRIEVANLD  146 (349)
T ss_dssp             TTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred             cccEEEEEecc-------CCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCC--------CCeEEEEcCC
Confidence            46788887532       256888998877655532  222222 12222247899998543        2378888887


Q ss_pred             CCccccCeEEcC--CCCCCcccccceeEEE--ECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCc-EEEE--e
Q 044903          223 NGEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGP-VAAM--D  294 (387)
Q Consensus       223 t~~~~~~W~~~~--~~~~~~~~~~~~~~v~--~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~--~  294 (387)
                      ...    -..+.  .+..|      ...++  .+|.||+..... ..|+.+|+....-+.+-.   .+...+ .+++  .
T Consensus       147 G~~----~~~l~~~~l~~P------~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGla~d~~  213 (349)
T 3v64_C          147 GAH----RKVLLWQSLEKP------RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDYA  213 (349)
T ss_dssp             SCS----CEEEECTTCSCE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC---SSCSCEEEEEEETT
T ss_pred             CCc----eEEEEeCCCCCc------ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE---CCCCCcceEEEeCC
Confidence            654    33332  22211      22233  268999986555 789999987543333321   111122 3444  3


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++||+.+...+.|.++|++...=+.+... ....+.+++..++.||+.......|..+|..++
T Consensus       214 ~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~-~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          214 GRRMYWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEECCCCEEEEEeCCCCceEEEEeC-CCCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence            789999998778999999876433333221 133456777789999999877889999985434

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.76  E-value=0.0033  Score=55.66  Aligned_cols=184  Identities=10%  Similarity=0.077  Sum_probs=103.2

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCC-CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT-PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      .++.+|+....       ...+.+||+. .+....+.... ......+..-++++|+.....        ..+..||+. 
T Consensus        29 ~~g~l~v~~~~-------~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~v~~~d~~-   91 (300)
T 2qc5_A           29 EDGKVWFTQHK-------ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA--------NKIGKLSKK-   91 (300)
T ss_dssp             TTSCEEEEETT-------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEEEEECTT-
T ss_pred             CCCCEEEEcCC-------CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC--------CeEEEECCC-
Confidence            35778886531       2467889988 66665321111 111111222357888875422        267889988 


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEE-eCCeEEE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAM-DEEVLYG  300 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~-~~g~ly~  300 (387)
                      ++    +.... ++....  .....+. -+|.+|+.+.....+..||++ ++......  +.....+ .+++ .+|+||+
T Consensus        92 g~----~~~~~-~~~~~~--~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~--~~~~~~~~~i~~d~~g~l~v  161 (300)
T 2qc5_A           92 GG----FTEYP-LPQPDS--GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL--PNKGSYPAFITLGSDNALWF  161 (300)
T ss_dssp             SC----EEEEE-CSSTTC--CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC--SSTTCCEEEEEECTTSSEEE
T ss_pred             CC----eEEec-CCCCCC--CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC--CCCCCCceeEEECCCCCEEE
Confidence            66    65443 111111  1122222 268898876545689999987 65554321  1111122 2333 3578999


Q ss_pred             EeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCceEEEEEec
Q 044903          301 IDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      .....+.|++||+ +.+...+...........++. -+|.||+....+..+.++|..
T Consensus       162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence            8766788999999 566665432222222333443 367898886666778888874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.76  E-value=0.0053  Score=54.24  Aligned_cols=188  Identities=7%  Similarity=-0.042  Sum_probs=103.5

Q ss_pred             eEEEe-CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEE
Q 044903          141 QLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       141 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      .++.. ++.+|+....       ...++++|+ +++................+. -++++|+.....        ..+.+
T Consensus       103 ~i~~~~~g~l~v~~~~-------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~  166 (299)
T 2z2n_A          103 GITEGPNGDIWFTEMN-------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQN--------NAIGR  166 (299)
T ss_dssp             EEEECTTSCEEEEETT-------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEEEE
T ss_pred             eeEECCCCCEEEEecC-------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCC--------CEEEE
Confidence            34443 5778886532       246788998 666554321111111122222 256888865321        36788


Q ss_pred             EeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEE-e
Q 044903          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAM-D  294 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~-~  294 (387)
                      ||+ +++    ..... .+....   ......+  +|.+|+.......+..||+ +++......  +.....+ .+++ .
T Consensus       167 ~~~-~g~----~~~~~-~~~~~~---~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~~~  234 (299)
T 2z2n_A          167 ITE-SGD----ITEFK-IPTPAS---GPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI--PTPNARPHAITAGA  234 (299)
T ss_dssp             ECT-TCC----EEEEE-CSSTTC---CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECS
T ss_pred             EcC-CCc----EEEee-CCCCCC---cceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC--CCCCCCceeEEECC
Confidence            998 666    65542 111111   1223333  5788887654568999999 777665422  1111122 3333 2


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +|+||+.....+.|.+||++ .....+..........+++..+|.||+... ++.+..+|+.+.
T Consensus       235 ~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          235 GIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             TTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence            57899887667889999994 444443221112223344446788888754 678999998743

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.76  E-value=0.0017  Score=61.11  Aligned_cols=185  Identities=11%  Similarity=-0.020  Sum_probs=101.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC---CCceeeeEE--eeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV---TPRRWCAAG--YSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~---~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~vyd  220 (387)
                      ++.+++.++.+       ..+.+||+.+.+.....+..   .........  .-++++++.++.+.        .+.+||
T Consensus       133 ~~~~~~~~~~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~--------~v~~~d  197 (433)
T 3bws_A          133 NTRLAIPLLED-------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN--------AVHVFD  197 (433)
T ss_dssp             SSEEEEEBTTS-------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT--------EEEEEE
T ss_pred             CCeEEEEeCCC-------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC--------EEEEEE
Confidence            66777776532       35899999988876543321   111122222  23678888877543        788999


Q ss_pred             CCCCccccCeEEcCCCCCCcccccceeEEEE-CC-EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCC-
Q 044903          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEE-  296 (387)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g-  296 (387)
                      ..+.+    -...-......    ....+.. ++ .+|+.+.....+.+||+.+.+....-..   ......++. .++ 
T Consensus       198 ~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~  266 (433)
T 3bws_A          198 LKTLA----YKATVDLTGKW----SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK---IGLPRGLLLSKDGK  266 (433)
T ss_dssp             TTTCC----EEEEEECSSSS----EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC---CSEEEEEEECTTSS
T ss_pred             CCCce----EEEEEcCCCCC----eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC---CCCceEEEEcCCCC
Confidence            98876    32211111110    0122222 33 5666665567899999987755332211   111112222 234 


Q ss_pred             eEEEEeC-------CCCeEEEEeCCCCceEEccccccccCceeE-EEeCC-eEEEEecCCceEEEEEecCC
Q 044903          297 VLYGIDE-------NSCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~g~-------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~-~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .|++.+.       .++.|++||+.+.+-......+.  ....+ ...++ .+|+.+..++.+.+||..+.
T Consensus       267 ~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          267 ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            4555442       35689999998775433321111  11222 22344 68888778889999999843

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.76  E-value=0.022  Score=51.51  Aligned_cols=184  Identities=11%  Similarity=0.002  Sum_probs=107.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCC----Cceee-CC-CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPIC----RTWTF-GP-ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t----~~W~~-l~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      ++.||+....       ...++++|+.+    ..-.. ++ .+..+. ..+....+++||++-..        ...++++
T Consensus        41 ~~~ly~~D~~-------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~--------~~~I~~~  104 (316)
T 1ijq_A           41 SNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSV--------LGTVSVA  104 (316)
T ss_dssp             TTEEEEEETT-------TTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETT--------TTEEEEE
T ss_pred             CCEEEEEECC-------CCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECC--------CCEEEEE
Confidence            5789988642       25688888876    22222 21 222222 11222247899998543        2378889


Q ss_pred             eCCCCccccCeEEcC--CCCCCcccccceeEEE--ECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCc-EEEE
Q 044903          220 DLMNGEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGP-VAAM  293 (387)
Q Consensus       220 d~~t~~~~~~W~~~~--~~~~~~~~~~~~~~v~--~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~  293 (387)
                      |+....    -+.+.  .+..+      ...++  .+|.||+..... ..|+++++....=+.+...   ....+ .+++
T Consensus       105 ~~~g~~----~~~~~~~~~~~P------~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~---~~~~P~gla~  171 (316)
T 1ijq_A          105 DTKGVK----RKTLFRENGSKP------RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---NIQWPNGITL  171 (316)
T ss_dssp             ETTSSS----EEEEEECTTCCE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---SCSCEEEEEE
T ss_pred             eCCCCc----eEEEEECCCCCc------ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC---CCCCceEEEE
Confidence            987654    33322  12211      22233  368999886433 6899999865433322110   11122 3444


Q ss_pred             e--CCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          294 D--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .  +++||+.+...+.|.++|.+...=+.+... .....+.+++..++.||+.-..++.|..+|..++
T Consensus       172 d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          172 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             eccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence            3  689999998778999999976543343322 2234456777789999999777889999998644

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.70  E-value=0.00062  Score=64.17  Aligned_cols=177  Identities=11%  Similarity=0.097  Sum_probs=97.0

Q ss_pred             ccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          165 RPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      .++++|+.+.+++.+..++......+.+.. ++++++.++.+.        .+.+||..+++    ..............
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--------~i~~~d~~~g~----~~~~~~~~~~~~~~  169 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDE--------GMDVLDINSGQ----TVRLSPPEKYKKKL  169 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSS--------SEEEEETTTCC----EEEECCCHHHHTTC
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCC--------eEEEEECCCCe----EeeecCcccccccC
Confidence            678888887766655443322211112222 677888776533        58999999887    55433221100000


Q ss_pred             cceeEEEE--CCEEEEEeeeCCeEEEEECCCCceee-ccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCce
Q 044903          244 EAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDD-MREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W  318 (387)
                      .....+.+  ++++++.++....+.+||+.+.+-.. +..   .+.....++..  ++.+|+.+..++.|.+||+.+.+.
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL---TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC---SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC---CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            11223333  78888887777899999998764332 221   11111223332  446777777788999999987755


Q ss_pred             EEccccccccCceeEEE-eCCeEEEEec--------CCceEEEEEecCC
Q 044903          319 KEVVKSDLLKGARHAAA-GGGRVCAVCE--------NGGGIVVVDVKAA  358 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~-~~~~l~v~gg--------~~~~i~v~d~~~~  358 (387)
                      .....  .......++. .+|+.+++++        .++.+.+||+.+.
T Consensus       247 ~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          247 IRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             EEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             EEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            43222  2122222222 3454444443        2457888888743

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.67  E-value=0.0032  Score=56.60  Aligned_cols=181  Identities=12%  Similarity=0.053  Sum_probs=99.2

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+....-.............-+++.++.++.+.        .+.+||..+.+
T Consensus       152 ~~~~l~~~~~d-------g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~~~d~~~~~  216 (337)
T 1gxr_A          152 DSKVCFSCCSD-------GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN--------TVRSWDLREGR  216 (337)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTTE
T ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC--------cEEEEECCCCc
Confidence            55566666532       4578999987754432111111111111122556666666433        68899988876


Q ss_pred             cccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEe
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g  302 (387)
                          -...-..+.+      ...+.  -+++++++++....+.+||..+..=..+..  ... .-..++. .++++++.+
T Consensus       217 ----~~~~~~~~~~------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~l~~~  283 (337)
T 1gxr_A          217 ----QLQQHDFTSQ------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HES-CVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             ----EEEEEECSSC------EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC--CSS-CEEEEEECTTSSEEEEE
T ss_pred             ----eEeeecCCCc------eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC--Ccc-ceeEEEECCCCCEEEEe
Confidence                3222222211      12222  356677777766789999998764332221  111 1112222 246677777


Q ss_pred             CCCCeEEEEeCCCCceEEccccccccCceeE-EEeCCeEEEEecCCceEEEEEec
Q 044903          303 ENSCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +.++.+.+||.++.+-....  ........+ ...+++.++.++.++.+.+||+.
T Consensus       284 ~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          284 GKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             cCCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            77899999999877544221  111111222 23467788887888889998863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.66  E-value=0.01  Score=53.02  Aligned_cols=188  Identities=12%  Similarity=0.089  Sum_probs=99.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.+++.|+.+       ..+.+||..+.+-...-.-...........-++++++.|+.+.        .+.+||..+.+
T Consensus        76 ~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~~  140 (312)
T 4ery_A           76 DSNLLVSASDD-------KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVKTGK  140 (312)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTS--------CEEEEETTTCC
T ss_pred             CCCEEEEECCC-------CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCE
Confidence            55666666532       4678889887653321000111111111122456666666543        68899988776


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEe
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g  302 (387)
                          -...-....     .....+.+  ++.+++.++....+.+||..+.+-...-.. ........++ ..+++.++.+
T Consensus       141 ----~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  210 (312)
T 4ery_A          141 ----CLKTLPAHS-----DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAA  210 (312)
T ss_dssp             ----EEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-SSCCCEEEEEECTTSSEEEEE
T ss_pred             ----EEEEecCCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec-cCCCceEEEEECCCCCEEEEE
Confidence                322111111     11222333  567777777778899999987654321110 0010011122 2345666677


Q ss_pred             CCCCeEEEEeCCCCceEEccccccc--cC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          303 ENSCTLSKYDEVMDDWKEVVKSDLL--KG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~v~~~~~~--~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.|.+||..+.+-.........  .. .......++++++.|+.++.+.+||+.+.
T Consensus       211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            7789999999987643222111111  11 12222346778888778899999999855

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.65  E-value=0.0038  Score=57.04  Aligned_cols=192  Identities=13%  Similarity=0.120  Sum_probs=104.6

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCcee-eeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW-CAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      -++.+++.|+.+       ..+.+||..+.++..+..+...... .+.+. -++++++.|+.+.        .+.+||..
T Consensus        18 ~~~~~l~~~~~d-------~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg--------~i~vwd~~   82 (372)
T 1k8k_C           18 KDRTQIAICPNN-------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR--------NAYVWTLK   82 (372)
T ss_dssp             TTSSEEEEECSS-------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS--------CEEEEEEE
T ss_pred             CCCCEEEEEeCC-------CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC--------eEEEEECC
Confidence            356667776532       4688999998876654443322211 12222 2466666666533        67889988


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCc-eeeccccc-cCCCCCcEEEE-eCCe
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANT-WDDMREGM-VRGWRGPVAAM-DEEV  297 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~-~~~~~~~~~~~-~~g~  297 (387)
                      +.+    +.....+....   .....+.+  ++++++.++....+.+||..+.. |....... .....-.+++. .++.
T Consensus        83 ~~~----~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  155 (372)
T 1k8k_C           83 GRT----WKPTLVILRIN---RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  155 (372)
T ss_dssp             TTE----EEEEEECCCCS---SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             CCe----eeeeEEeecCC---CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence            887    66543222111   11223333  56666776666788888887653 43322111 11111122232 2566


Q ss_pred             EEEEeCCCCeEEEEeCCCC----------------ceEEccccccccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          298 LYGIDENSCTLSKYDEVMD----------------DWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~g~~~~~v~~yd~~~~----------------~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++.++.++.+.+||....                .-+.+............+  ..+++.++.++.++.+.+||..+.
T Consensus       156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            7777778899999996421                111222222222222222  236778888778888999999754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.65  E-value=0.0077  Score=54.57  Aligned_cols=198  Identities=13%  Similarity=0.013  Sum_probs=98.4

Q ss_pred             CEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCcc
Q 044903          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~  226 (387)
                      +.+|+....... ......++++|+.+.+-...-+....-...+...-++.+|+.+..+.        .+.+||+.+.+ 
T Consensus        53 ~~l~~~~~~~~~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~--------~v~~~d~~~~~-  122 (353)
T 3vgz_A           53 NALWLATSQSRK-LDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNS--------AVTAIDAKTGE-  122 (353)
T ss_dssp             TEEEEEECCCTT-TEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTT--------EEEEEETTTCC-
T ss_pred             CEEEEEcCCCcC-CCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCC--------EEEEEeCCCCe-
Confidence            467665532110 01135789999998865442222111111112222345888765432        78999999887 


Q ss_pred             ccCeEEcCCCCCCcc----cccceeEEEE--C-CEEEEEee-eCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeE
Q 044903          227 NSRWEKTGELKDGRF----SREAIDAVGW--K-GKLCLVNV-KGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVL  298 (387)
Q Consensus       227 ~~~W~~~~~~~~~~~----~~~~~~~v~~--~-g~lyv~gg-~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~l  298 (387)
                         -...-+.+....    .......+.+  + +.+|+.+. ....+.+||+.+.+-...-........+....-.++.+
T Consensus       123 ---~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          123 ---VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             ---EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             ---eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence               322211211100    0000112222  4 45777663 34679999998764322111011111122222234456


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEcccccc--ccC-ceeEE-Ee-CCeEEEEecCCceEEEEEecCC
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKSDL--LKG-ARHAA-AG-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~--~~~-~~~~~-~~-~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      |+.. .++.+.+||+++.+-......+.  ... ...++ .- ++.+|+.+..++.+.++|+.+.
T Consensus       200 ~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          200 YTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             EEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             EEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            6664 47889999998775433222211  111 12222 22 4557777666789999999754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.64  E-value=0.039  Score=51.79  Aligned_cols=191  Identities=12%  Similarity=0.026  Sum_probs=110.6

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCC----ceeeC-C-CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEE
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICR----TWTFG-P-ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~----~W~~l-~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      .++.||+....       ...++++++...    ....+ . .+..+. ..+....+++||++-..        ...+++
T Consensus       122 ~~~~lywsD~~-------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~--------~~~I~~  185 (400)
T 3p5b_L          122 ASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSV--------LGTVSV  185 (400)
T ss_dssp             TTTEEEEEETT-------TTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETT--------TTEEEE
T ss_pred             ccCceEEEecC-------CCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECC--------CCeEEE
Confidence            36789987542       246778887652    22222 2 121111 12222247899998543        237888


Q ss_pred             EeCCCCccccCeEEcCC--CCCCcccccceeEEE--ECCEEEEEeee-CCeEEEEECCCCceeec-cccccCCCCCc-EE
Q 044903          219 WDLMNGEKNSRWEKTGE--LKDGRFSREAIDAVG--WKGKLCLVNVK-GAEGAVYDVVANTWDDM-REGMVRGWRGP-VA  291 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~--~~~~~~~~~~~~~v~--~~g~lyv~gg~-~~~i~~yD~~~~~W~~~-~~~~~~~~~~~-~~  291 (387)
                      +|+....    -..+..  +..|      ...++  .+|.||+.... ...|+.+++....=+.+ ...+    ..+ .+
T Consensus       186 ~~~~g~~----~~~l~~~~~~~P------~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l----~~P~gl  251 (400)
T 3p5b_L          186 ADTKGVK----RKTLFRENGSKP------RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI----QWPNGI  251 (400)
T ss_dssp             ECTTTCS----EEEEEECSSCCE------EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSC----SCEEEE
T ss_pred             EeCCCCc----eEEEEeCCCCCc------ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCC----CceEEE
Confidence            9888765    444321  1111      12223  36899988632 36889998865322222 1111    112 33


Q ss_pred             EEe--CCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeE
Q 044903          292 AMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       292 ~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~  365 (387)
                      ++.  +++||+.+.....|.++|.+...-+.+... .....+++++..++.||+.-..+..|..+|..++..-..+.
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          252 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            433  689999998778999999986544444332 23445678888999999997777889999965443333343

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.62  E-value=0.017  Score=53.80  Aligned_cols=189  Identities=8%  Similarity=0.004  Sum_probs=99.8

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      .++..++.|+.+       ..+.+||..+.+-...-..........+..-++++++.|+.+.        .+.+||..+.
T Consensus       107 ~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~--------~i~iwd~~~~  171 (420)
T 3vl1_A          107 LQMRRFILGTTE-------GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDM--------QLKIWSVKDG  171 (420)
T ss_dssp             SSSCEEEEEETT-------SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTC
T ss_pred             cCCCEEEEEECC-------CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCC--------eEEEEeCCCC
Confidence            466777777632       4678899887665443211111111111122456666666543        6889998876


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEE---------
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAA---------  292 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~---------  292 (387)
                      +.   -..+.....      ...++.+  ++.+.+.++.+..+.+||..+.+-. .+.........-.+++         
T Consensus       172 ~~---~~~~~~h~~------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  242 (420)
T 3vl1_A          172 SN---PRTLIGHRA------TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL  242 (420)
T ss_dssp             CC---CEEEECCSS------CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred             cC---ceEEcCCCC------cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence            51   111111111      1222222  5666667776678999999876422 1111000000000111         


Q ss_pred             -------------EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCe-EEEEecCCceEEEEEec
Q 044903          293 -------------MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       293 -------------~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~-l~v~gg~~~~i~v~d~~  356 (387)
                                   ..++++.+.+..++.|.+||..+..-..... .........+  ..++. +++.|+.++.+.+||+.
T Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          243 HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             eecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence                         1256677777788999999997764222111 1122222222  23455 88888888999999998


Q ss_pred             CC
Q 044903          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      +.
T Consensus       322 ~~  323 (420)
T 3vl1_A          322 SP  323 (420)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.61  E-value=0.0085  Score=53.20  Aligned_cols=190  Identities=8%  Similarity=0.022  Sum_probs=107.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      .+.+++.+..       ...+.++|+.|.+  |+.-..-. .........-++++++.+  .        ..+..||+ +
T Consensus         4 ~~~~lv~~~~-------~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--~--------~~V~~~d~-~   64 (276)
T 3no2_A            4 PQHLLVGGSG-------WNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--S--------KGAKMITR-D   64 (276)
T ss_dssp             CCEEEEECTT-------CSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--B--------SEEEEECT-T
T ss_pred             CCcEEEeeCC-------CCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--C--------CCEEEECC-C
Confidence            3566666542       2567888987774  66532211 122333444577888832  1        25889999 6


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeee-CCeEEEEECCCC-ceeec-cccc--cCCCCCcEEEEeCCeE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK-GAEGAVYDVVAN-TWDDM-REGM--VRGWRGPVAAMDEEVL  298 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~-~~~i~~yD~~~~-~W~~~-~~~~--~~~~~~~~~~~~~g~l  298 (387)
                      ++..  |+.-.+.....    ......-+|++++.... ...++.+|++-+ .|+.. ....  ............+|.+
T Consensus        65 G~~~--W~~~~~~~~~~----~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~  138 (276)
T 3no2_A           65 GREL--WNIAAPAGCEM----QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNY  138 (276)
T ss_dssp             SCEE--EEEECCTTCEE----EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCE
T ss_pred             CCEE--EEEcCCCCccc----cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCE
Confidence            6544  77554211110    12233347777776554 467888888544 45432 1111  0011112234456777


Q ss_pred             EEEeCCCCeEEEEeCCCC-ceEEccccccccCce-eEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          299 YGIDENSCTLSKYDEVMD-DWKEVVKSDLLKGAR-HAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~-~W~~v~~~~~~~~~~-~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      ++....++.|.+||++.+ .|+.-..    ...+ ..+..+|.++|.+..++.++.+|+.++  ...|++
T Consensus       139 lv~~~~~~~v~~~d~~G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG--~~~w~~  202 (276)
T 3no2_A          139 LVPLFATSEVREIAPNGQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN--RIVRRV  202 (276)
T ss_dssp             EEEETTTTEEEEECTTSCEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTC--CEEEEE
T ss_pred             EEEecCCCEEEEECCCCCEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC--cEEEEe
Confidence            777777789999999744 4654322    1122 334457889998777778999998832  257887

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.60  E-value=0.003  Score=57.77  Aligned_cols=189  Identities=9%  Similarity=0.038  Sum_probs=96.7

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-CCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++..++.|+.+       ..+.+||..++++.....+. ....-.+.+. -+++.++.|+.+.        .+.+||..+
T Consensus        63 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~v~i~d~~~  127 (372)
T 1k8k_C           63 DSNRIVTCGTD-------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR--------VISICYFEQ  127 (372)
T ss_dssp             TTTEEEEEETT-------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS--------SEEEEEEET
T ss_pred             CCCEEEEEcCC-------CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC--------EEEEEEecC
Confidence            56666666532       46788999888765532221 1111111222 2456666666433        467777666


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCC---------ceee-------ccccccCC
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVAN---------TWDD-------MREGMVRG  285 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~---------~W~~-------~~~~~~~~  285 (387)
                      ...   |........+..  .....+.+  ++.+++.++....+.+||....         .|..       +.......
T Consensus       128 ~~~---~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
T 1k8k_C          128 END---WWVCKHIKKPIR--STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  202 (372)
T ss_dssp             TTT---EEEEEEECTTCC--SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             CCc---ceeeeeeecccC--CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence            541   332221111100  11222333  5667777776778999996421         1111       11000000


Q ss_pred             CCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc--eeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          286 WRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       286 ~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ..-.+++. .++..++.++.++.|.+||..+.+-..  ........  ......++++++.| .++.+.+||...
T Consensus       203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA--TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE--EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE--EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            01112222 255666677778999999998765322  22222222  22334477777665 788899999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.0018  Score=66.19  Aligned_cols=191  Identities=13%  Similarity=0.066  Sum_probs=108.6

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--C--CEEEEEecCCCCCCCCCCceEEEEeC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--R--GAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~v~vyd~  221 (387)
                      ++..++.|+.+       ..+.+||..+.++..+..+........+..+  +  +..++.|+.+.        .+.+||.
T Consensus        20 dg~~latg~~d-------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg--------~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETT-------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS--------CEEEEEE
T ss_pred             CCCeEEEEECC-------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC--------eEEEEEC
Confidence            45555555532       3577888876666655443322222222222  2  56777776644        6889999


Q ss_pred             CCCccccCeEEcCCCCCCcccccceeEEEE--C--CEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe---
Q 044903          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---  294 (387)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~--g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---  294 (387)
                      .+++    |..+..+....   .....+.+  +  +.+++.|+.+..+.+||..+..-............-.+++..   
T Consensus        85 ~~~~----~~~~~~~~~h~---~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           85 ENGR----WSQIAVHAVHS---ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             ETTE----EEEEEEECCCS---SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             CCCc----ccccccccCCC---CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            8887    76665443221   11233333  2  667777777789999999776322111000000011122222   


Q ss_pred             -----------CCeEEEEeCCCCeEEEEeCCCC--ceEEccccccccCceeEEE--eC---CeEEEEecCCceEEEEEec
Q 044903          295 -----------EEVLYGIDENSCTLSKYDEVMD--DWKEVVKSDLLKGARHAAA--GG---GRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 -----------~g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~--~~---~~l~v~gg~~~~i~v~d~~  356 (387)
                                 ++.+++.++.++.|.+||..+.  .+..+............+.  .+   +++++.|+.++.+.+||+.
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                       3567777778899999998654  3444444333333332332  34   7888888888999999998


Q ss_pred             CC
Q 044903          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      ..
T Consensus       238 ~~  239 (753)
T 3jro_A          238 NE  239 (753)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.52  E-value=0.0092  Score=53.37  Aligned_cols=187  Identities=10%  Similarity=0.000  Sum_probs=99.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+....-.-........+..-++++++.|+.+.        .+.+||..+.+
T Consensus        34 ~~~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--------~i~vwd~~~~~   98 (312)
T 4ery_A           34 NGEWLASSSAD-------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK--------TLKIWDVSSGK   98 (312)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTCC
T ss_pred             CCCEEEEeeCC-------CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCC--------EEEEEECCCCc
Confidence            45566666532       3567888877766542111111111111122456777776543        68889988776


Q ss_pred             cccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEe
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g  302 (387)
                          -...-.-...     ....+.  -++.+.+.|+....+.+||+.+.+-...-.  .....-.+++. .++.+++.+
T Consensus        99 ----~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           99 ----CLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             ----EEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEE
T ss_pred             ----EEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec--CCCCcEEEEEEcCCCCEEEEE
Confidence                3221100100     111222  245666677777889999998764322111  00000112222 256677777


Q ss_pred             CCCCeEEEEeCCCCceEEccccccccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          303 ENSCTLSKYDEVMDDWKEVVKSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~v~~~~~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.+.+||..+.+-........... .......+++.++.++.++.+.+||..+.
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            788999999998765432211111111 12233346777778777888999998744

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.52  E-value=0.0057  Score=55.07  Aligned_cols=145  Identities=11%  Similarity=0.101  Sum_probs=76.8

Q ss_pred             CEEEEEecCCCCCCCCCCceEEEEeCCC-CccccCeEEcC----CCCCCcccccceeEEEE--CCE-EEEEeeeCCeEEE
Q 044903          196 GAVYVASGIGSQFSSDVAKSVEKWDLMN-GEKNSRWEKTG----ELKDGRFSREAIDAVGW--KGK-LCLVNVKGAEGAV  267 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t-~~~~~~W~~~~----~~~~~~~~~~~~~~v~~--~g~-lyv~gg~~~~i~~  267 (387)
                      ..+|+.+..+        ..+.+||..+ .+    ...+.    ..+....    ...+.+  +|+ +|+.+.....+.+
T Consensus       141 ~~l~~~~~~~--------~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~pdg~~l~~~~~~~~~i~~  204 (343)
T 1ri6_A          141 RTLWVPALKQ--------DRICLFTVSDDGH----LVAQDPAEVTTVEGAG----PRHMVFHPNEQYAYCVNELNSSVDV  204 (343)
T ss_dssp             SEEEEEEGGG--------TEEEEEEECTTSC----EEEEEEEEEECSTTCC----EEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CEEEEecCCC--------CEEEEEEecCCCc----eeeecccccccCCCCC----cceEEECCCCCEEEEEeCCCCEEEE
Confidence            4577765332        2688899887 55    54322    1111111    112222  454 7776555578999


Q ss_pred             EECC--CCceeeccc--cccCCC---CCc-EEEEe--CCeEEEEeCCCCeEEEEeCC--CCceEEccccccccCceeEE-
Q 044903          268 YDVV--ANTWDDMRE--GMVRGW---RGP-VAAMD--EEVLYGIDENSCTLSKYDEV--MDDWKEVVKSDLLKGARHAA-  334 (387)
Q Consensus       268 yD~~--~~~W~~~~~--~~~~~~---~~~-~~~~~--~g~ly~~g~~~~~v~~yd~~--~~~W~~v~~~~~~~~~~~~~-  334 (387)
                      ||..  +.++.....  ..+.+.   ..+ .++..  +..||+....++.+.+||.+  +.+++.+...+.......++ 
T Consensus       205 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  284 (343)
T 1ri6_A          205 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV  284 (343)
T ss_dssp             EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEE
T ss_pred             EEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEE
Confidence            9984  344433221  112211   111 23332  34677777667899999987  55677765443322232233 


Q ss_pred             EeCCe-EEEEecCCceEEEEEec
Q 044903          335 AGGGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       335 ~~~~~-l~v~gg~~~~i~v~d~~  356 (387)
                      .-+|+ ||+.+..++.+.+|++.
T Consensus       285 s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          285 DHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCCCEEEEecCCCCeEEEEEEc
Confidence            33455 56554456788888554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.51  E-value=0.0027  Score=57.88  Aligned_cols=228  Identities=14%  Similarity=0.058  Sum_probs=114.8

Q ss_pred             CCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEE-EeCCEEEEEcCccCCCCCCCCccEEEeCCCCc
Q 044903           97 STPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLV-SLSGKLILLAATTHNFNPALTRPLIFDPICRT  175 (387)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~  175 (387)
                      +....++.+|..++++..+......               .....++ .-++++|+.+...     ....+++||..+.+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~---------------~~p~~~a~spdg~l~~~~~~~-----~~~~v~~~~~~~g~   74 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAAT---------------QNPTYLALSAKDCLYSVDKED-----DEGGIAAWQIDGQT   74 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEEC---------------SCCCCEEECTTCEEEEEEEET-----TEEEEEEEEEETTE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeecc---------------CCcceEEEccCCeEEEEEecC-----CCceEEEEEecCCc
Confidence            3456688889888776553321110               0001222 3467777765321     12568899998887


Q ss_pred             eeeCCCCCC--CceeeeEEeeC-CEEEEEecCCCCCCCCCCceEEEEeCC-CCccccCeEEcCCCCCC------cccccc
Q 044903          176 WTFGPELVT--PRRWCAAGYSR-GAVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDG------RFSREA  245 (387)
Q Consensus       176 W~~l~~~~~--~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~vyd~~-t~~~~~~W~~~~~~~~~------~~~~~~  245 (387)
                      ++.+.....  ......+..-+ ..+|+.+..+        ..+.+||.. +.+    ...+..+...      +.....
T Consensus        75 ~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~--------~~v~v~~~~~~g~----~~~~~~~~~~~~~p~~~~~~~~  142 (347)
T 3hfq_A           75 AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK--------GTAEVMKIAADGA----LTLTDTVQHSGHGPRPEQDGSH  142 (347)
T ss_dssp             EEEEEEEEEESCCCSEEEEETTTTEEEEEETTT--------TEEEEEEECTTSC----EEEEEEEECCCCCSSTTCSSCC
T ss_pred             EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC--------CEEEEEEeCCCCC----eeecceeecCCCCCCccccCCC
Confidence            766543221  11111122223 4577765322        257777774 223    3333211110      000001


Q ss_pred             eeEEE--ECCEEEEEeeeCCeEEEEECC-CCceeecccc-ccCCCCCcEEEE-eCCe-EEEEeCCCCeEEEEeCC--CCc
Q 044903          246 IDAVG--WKGKLCLVNVKGAEGAVYDVV-ANTWDDMREG-MVRGWRGPVAAM-DEEV-LYGIDENSCTLSKYDEV--MDD  317 (387)
Q Consensus       246 ~~~v~--~~g~lyv~gg~~~~i~~yD~~-~~~W~~~~~~-~~~~~~~~~~~~-~~g~-ly~~g~~~~~v~~yd~~--~~~  317 (387)
                      ...+.  -+|++|+.+.....+.+||.. +++...+... ...+.....++. .+|+ +|+.+...+.+.+||.+  +.+
T Consensus       143 ~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~  222 (347)
T 3hfq_A          143 IHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA  222 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             ceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence            11222  367777765555789999987 5555443211 111111112222 2444 88887777888888765  466


Q ss_pred             eEEcccc---ccc----cCceeE-EEeCCe-EEEEecCCceEEEEEec
Q 044903          318 WKEVVKS---DLL----KGARHA-AAGGGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       318 W~~v~~~---~~~----~~~~~~-~~~~~~-l~v~gg~~~~i~v~d~~  356 (387)
                      ++.+...   +..    .....+ +.-+|+ ||+.+..++.+.+||+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            6554432   211    112222 334565 77776667889999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.51  E-value=0.012  Score=52.49  Aligned_cols=190  Identities=13%  Similarity=0.108  Sum_probs=101.6

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCcee-eeEEee---CCEEEEEecCCCCCCCCCCceEEEEe
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW-CAAGYS---RGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~vyd  220 (387)
                      .++..++.|+.+       ..+.+||..+...+.+..+...... .+.+..   ++++++.|+.+.        .+.+||
T Consensus        19 ~~g~~las~s~D-------~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~--------~v~iWd   83 (297)
T 2pm7_B           19 YYGKRMATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVMIWK   83 (297)
T ss_dssp             TTSSEEEEEETT-------SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT--------EEEEEE
T ss_pred             CCCCEEEEEeCC-------CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC--------EEEEEE
Confidence            356666766642       3577888765443322222111111 112211   256777777644        788999


Q ss_pred             CCCCccccCeEEcCCCCCCcccccceeEEEEC----CEEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEEe-
Q 044903          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWK----GKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMD-  294 (387)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~----g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~-  294 (387)
                      ..+.+    |..+..+....   .....+.+.    |.+.+.++.+..+.+||..+. .+..... ......-.+++.. 
T Consensus        84 ~~~~~----~~~~~~~~~h~---~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~h~~~v~~~~~~p  155 (297)
T 2pm7_B           84 EENGR----WSQIAVHAVHS---ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAP  155 (297)
T ss_dssp             BSSSC----BCCCEEECCCS---SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-ECCSSCEEEEEECC
T ss_pred             cCCCc----eEEEEEeecCC---CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-ecccCccceEeecC
Confidence            98877    65543222111   112233332    566667777788999998765 3321100 0000000111111 


Q ss_pred             -------------CCeEEEEeCCCCeEEEEeCCCCc--eEEccccccccCceeEEEe--C---CeEEEEecCCceEEEEE
Q 044903          295 -------------EEVLYGIDENSCTLSKYDEVMDD--WKEVVKSDLLKGARHAAAG--G---GRVCAVCENGGGIVVVD  354 (387)
Q Consensus       295 -------------~g~ly~~g~~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~--~---~~l~v~gg~~~~i~v~d  354 (387)
                                   ++++++.++.++.|.+||..+..  |..+..+..+......+.+  +   +.+++.++.++.+.+||
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence                         24577778888999999986543  6555444444443333332  2   47778877888999999


Q ss_pred             ecC
Q 044903          355 VKA  357 (387)
Q Consensus       355 ~~~  357 (387)
                      +..
T Consensus       236 ~~~  238 (297)
T 2pm7_B          236 QDN  238 (297)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.49  E-value=0.023  Score=50.40  Aligned_cols=203  Identities=9%  Similarity=-0.007  Sum_probs=107.4

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .+|.+++.+.         +.+..||+ +.  .|+.-.+... .........+++++|......       ..+..+|+.
T Consensus        46 pdG~ilvs~~---------~~V~~~d~-~G~~~W~~~~~~~~-~~~~~~~~~dG~~lv~~~~~~-------~~v~~vd~~  107 (276)
T 3no2_A           46 KAGEILFSYS---------KGAKMITR-DGRELWNIAAPAGC-EMQTARILPDGNALVAWCGHP-------STILEVNMK  107 (276)
T ss_dssp             TTSCEEEECB---------SEEEEECT-TSCEEEEEECCTTC-EEEEEEECTTSCEEEEEESTT-------EEEEEECTT
T ss_pred             CCCCEEEeCC---------CCEEEECC-CCCEEEEEcCCCCc-cccccEECCCCCEEEEecCCC-------CEEEEEeCC
Confidence            4677777321         45888998 55  3665332111 112222334677777644311       256777874


Q ss_pred             CCccccCeEEcC--CCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEEeCCeEE
Q 044903          223 NGEKNSRWEKTG--ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMDEEVLY  299 (387)
Q Consensus       223 t~~~~~~W~~~~--~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~~g~ly  299 (387)
                      -.. .  |+.-.  ....+. ..........+|.+++.......+.+||++-+ .|+.-....+    ..+....+|.++
T Consensus       108 Gk~-l--~~~~~~~~~~~~~-~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~----~~~~~~~~g~~~  179 (276)
T 3no2_A          108 GEV-L--SKTEFETGIERPH-AQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTP----FSSAFLDNGDCL  179 (276)
T ss_dssp             SCE-E--EEEEECCSCSSGG-GSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCC----CEEEECTTSCEE
T ss_pred             CCE-E--EEEeccCCCCccc-ccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCc----cceeEcCCCCEE
Confidence            332 2  54321  111110 00112234456777766554578999999833 5765432111    224445577888


Q ss_pred             EEeCCCCeEEEEeCCCC--ceEEccc-ccc--ccCce-eEEEeCCeEEEEecCC----------ceEEEEEecCCCCCce
Q 044903          300 GIDENSCTLSKYDEVMD--DWKEVVK-SDL--LKGAR-HAAAGGGRVCAVCENG----------GGIVVVDVKAAAAPTI  363 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~--~W~~v~~-~~~--~~~~~-~~~~~~~~l~v~gg~~----------~~i~v~d~~~~~~~~~  363 (387)
                      +.+...+.|..+|+++.  .|+.-.. .+.  +.... .....+|.+||....+          ..++-+|.+.+   -.
T Consensus       180 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~---~~  256 (276)
T 3no2_A          180 VACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK---VV  256 (276)
T ss_dssp             EECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB---EE
T ss_pred             EEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC---EE
Confidence            88776778999999854  4665322 221  11122 3334588999987322          23444444432   68


Q ss_pred             eEEcCCCCceeeE
Q 044903          364 FVVDTPLGFEALS  376 (387)
Q Consensus       364 W~~~~~~~~~~~~  376 (387)
                      |+......|..++
T Consensus       257 W~~~~~~~~~~~~  269 (276)
T 3no2_A          257 WQLNDKVKFGMIS  269 (276)
T ss_dssp             EEECCTTTSCCCC
T ss_pred             EEecCccccccee
Confidence            9987777666443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.49  E-value=0.063  Score=54.97  Aligned_cols=183  Identities=11%  Similarity=-0.005  Sum_probs=108.5

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCC----ceee-CC-CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICR----TWTF-GP-ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~----~W~~-l~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      ++.||+....       ...++++++...    .... +. .+..+. ..+....+++||++-..        ...|+++
T Consensus       435 ~~~lY~sD~~-------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~--------~~~I~v~  498 (791)
T 3m0c_C          435 SNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSV--------LGTVSVA  498 (791)
T ss_dssp             TTEEEEEETT-------TTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETT--------TTEEEEE
T ss_pred             CCeeEEeecc-------ceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecC--------CCeEEEE
Confidence            6788887542       245667776542    2222 22 222222 22222346799998543        2378999


Q ss_pred             eCCCCccccCeEEcC--CCCCCcccccceeEEEE---CCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCc-EEE
Q 044903          220 DLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGW---KGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGP-VAA  292 (387)
Q Consensus       220 d~~t~~~~~~W~~~~--~~~~~~~~~~~~~~v~~---~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~  292 (387)
                      |+....    -+.+.  .+..       -.++++   +|.||+..-.. ..|+++++....=+.+..   .+...+ .++
T Consensus       499 ~ldG~~----~~~l~~~~l~~-------P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~---~~l~~P~GLa  564 (791)
T 3m0c_C          499 DTKGVK----RKTLFRENGSK-------PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGIT  564 (791)
T ss_dssp             ETTSSS----EEEEEECTTCC-------EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---SSCSCEEEEE
T ss_pred             eCCCCe----EEEEEeCCCCC-------cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe---CCCCCceEEE
Confidence            988665    44443  2221       123333   58999986332 689999987543333221   111122 233


Q ss_pred             E--eCCeEEEEeCCCCeEEEEeCCCCceEEccc-cccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          293 M--DEEVLYGIDENSCTLSKYDEVMDDWKEVVK-SDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~--~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~-~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +  .+++||+.+.....|.++|++...=+.+.. .......++++..+++||+.-.....|+.+|..++
T Consensus       565 vD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence            3  368999998777899999997654444432 22344567888899999999777889999987644

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.48  E-value=0.0023  Score=58.99  Aligned_cols=185  Identities=8%  Similarity=0.046  Sum_probs=98.6

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++..++.|+.+       ..+.+||..+++-...-..........+... ++.+++.++.+.        .+.+||..+.
T Consensus       150 dg~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg--------~v~~wd~~~~  214 (357)
T 4g56_B          150 DGTQAVSGGKD-------FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG--------RILLWDTRKP  214 (357)
T ss_dssp             SSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS--------CEEECCTTSS
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC--------ceEEEECCCC
Confidence            56666666632       3578899888764432111111111111112 334666766543        5788888876


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEE--eCCeE
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAM--DEEVL  298 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~--~~g~l  298 (387)
                      +    -..........   ....++.+   ++.+++.|+....+.+||..+.+=. .+.. ...  .-.+++.  .++++
T Consensus       215 ~----~~~~~~~~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~--~v~~l~~sp~~~~~  284 (357)
T 4g56_B          215 K----PATRIDFCASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-HSQ--NITGLAYSYHSSPF  284 (357)
T ss_dssp             S----CBCBCCCTTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-CSS--CEEEEEECSSSSCC
T ss_pred             c----eeeeeeecccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-cce--eEEEEEEcCCCCCE
Confidence            6    22221111110   11223333   3567777776678999998765321 1111 111  1122333  23456


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEccccccccCce-eEEE--eCCeEEEEecCCceEEEEEecCC
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR-HAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~-~~~~--~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+.++.++.|.+||.++.+-...  .. +.... +++.  .++++++.++.++.|.+||+...
T Consensus       285 lasgs~D~~i~iwd~~~~~~~~~--~~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          285 LASISEDCTVAVLDADFSEVFRD--LS-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEETTSCEEEECTTSCEEEEE--CC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEeCCCEEEEEECCCCcEeEE--CC-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            66677789999999987743322  21 22222 2332  36888888888999999998743

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.48  E-value=0.033  Score=51.84  Aligned_cols=173  Identities=10%  Similarity=0.001  Sum_probs=96.5

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~  242 (387)
                      ..+.+||..+++............-.+.+.. ++++++.|+.+.        .+.+||..+.+    -...-....    
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------~i~iwd~~~~~----~~~~~~~~~----  176 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG--------LVDIYDVESQT----KLRTMAGHQ----  176 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCC----EEEEECCCS----
T ss_pred             CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC--------eEEEEECcCCe----EEEEecCCC----
Confidence            4688999998887664433222211222222 556666666533        68899988876    332211111    


Q ss_pred             ccceeEEEECCEEEEEeeeCCeEEEEECCCCcee--eccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceE
Q 044903          243 REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD--DMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWK  319 (387)
Q Consensus       243 ~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~--~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~  319 (387)
                       .....+..++.+.+.|+....+.+||.....-.  .+..  ..+ .-.+++.. ++.+++.++.++.|.+||..+..-.
T Consensus       177 -~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  252 (401)
T 4aez_A          177 -ARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG--HSS-EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK  252 (401)
T ss_dssp             -SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC--CSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE
T ss_pred             -CceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcC--CCC-CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc
Confidence             113345557777777777789999999743211  1111  111 11122222 5677777778899999999875322


Q ss_pred             EccccccccCce-eEEEe--CCeEEEEec--CCceEEEEEecCC
Q 044903          320 EVVKSDLLKGAR-HAAAG--GGRVCAVCE--NGGGIVVVDVKAA  358 (387)
Q Consensus       320 ~v~~~~~~~~~~-~~~~~--~~~l~v~gg--~~~~i~v~d~~~~  358 (387)
                      .  ......... ++...  +..+++.|+  .++.+.+||..+.
T Consensus       253 ~--~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          253 F--TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             E--EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             E--EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            2  111222222 22222  457777765  4788999998754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.48  E-value=0.0085  Score=54.24  Aligned_cols=181  Identities=11%  Similarity=0.061  Sum_probs=96.6

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+-...-..........+..-+++.++.|+.+.        .+.+||..+.+
T Consensus       133 dg~~l~~g~~d-------g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg--------~i~iwd~~~~~  197 (321)
T 3ow8_A          133 DSQYLATGTHV-------GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG--------IINIFDIATGK  197 (321)
T ss_dssp             TSSEEEEECTT-------SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE
T ss_pred             CCCEEEEEcCC-------CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC--------eEEEEECCCCc
Confidence            45555555422       3567777776543221111111111111122566667766543        68899998876


Q ss_pred             cccCeE-EcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEE
Q 044903          226 KNSRWE-KTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGI  301 (387)
Q Consensus       226 ~~~~W~-~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~  301 (387)
                          -. .+..-..+      ...+.  -++++.+.++.+..+.+||..+..-...-.+- .. .-.+++. .+++.++.
T Consensus       198 ----~~~~~~~h~~~------v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~-~v~~~~~sp~~~~l~s  265 (321)
T 3ow8_A          198 ----LLHTLEGHAMP------IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH-AS-WVLNVAFCPDDTHFVS  265 (321)
T ss_dssp             ----EEEEECCCSSC------CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC-SS-CEEEEEECTTSSEEEE
T ss_pred             ----EEEEEcccCCc------eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC-CC-ceEEEEECCCCCEEEE
Confidence                32 22211111      11222  36777777777788999999876543221100 00 0112222 25667777


Q ss_pred             eCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCeEEEEecCCceEEEEEe
Q 044903          302 DENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       302 g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~  355 (387)
                      ++.++.|.+||..+.+  .+............+  ..+++.++.++.++.+.+||.
T Consensus       266 ~s~D~~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          266 SSSDKSVKVWDVGTRT--CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EeCCCcEEEEeCCCCE--EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            7788999999998764  333332233332222  336777788788889999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.46  E-value=0.026  Score=51.02  Aligned_cols=184  Identities=10%  Similarity=0.007  Sum_probs=100.5

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceee-CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++.+++.|+.+       ..+.+||..+.+-.. +..-+ ......+..-+++.++.|+.+.        .+.+||..+.
T Consensus        91 ~~~~l~s~s~D-------~~i~lWd~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~g~~dg--------~v~i~~~~~~  154 (321)
T 3ow8_A           91 TLPIAASSSLD-------AHIRLWDLENGKQIKSIDAGP-VDAWTLAFSPDSQYLATGTHVG--------KVNIFGVESG  154 (321)
T ss_dssp             SSSEEEEEETT-------SEEEEEETTTTEEEEEEECCT-TCCCCEEECTTSSEEEEECTTS--------EEEEEETTTC
T ss_pred             CCCEEEEEeCC-------CcEEEEECCCCCEEEEEeCCC-ccEEEEEECCCCCEEEEEcCCC--------cEEEEEcCCC
Confidence            34555555532       457788887765432 11111 1111112222456666666533        6788888877


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEE
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGI  301 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~  301 (387)
                      +..  +....  ...     ...++.  -+|++.+.|+.+..+.+||..+.+-...-.....  .-.+++. .++++++.
T Consensus       155 ~~~--~~~~~--~~~-----~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~spd~~~l~s  223 (321)
T 3ow8_A          155 KKE--YSLDT--RGK-----FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM--PIRSLTFSPDSQLLVT  223 (321)
T ss_dssp             SEE--EEEEC--SSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CCCEEEECTTSCEEEE
T ss_pred             cee--EEecC--CCc-----eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC--ceeEEEEcCCCCEEEE
Confidence            621  11111  100     012222  3677777777778899999987643221111111  1123333 35677778


Q ss_pred             eCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          302 DENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       302 g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.++.|.+||..+..-..  ...........+  ..+++.++.|+.++.+.+||+.+.
T Consensus       224 ~s~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLAG--TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             ECTTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCeEEEEECCCcceeE--EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            8888999999998764432  222222222222  336788888888899999998754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.46  E-value=0.036  Score=50.21  Aligned_cols=199  Identities=11%  Similarity=0.090  Sum_probs=104.8

Q ss_pred             eEEE-eCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCC-----CC-c-eeeeEEee--CCEEEEEecCCCCC
Q 044903          141 QLVS-LSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELV-----TP-R-RWCAAGYS--RGAVYVASGIGSQF  208 (387)
Q Consensus       141 ~~~~-~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~-----~~-r-~~~~~~~~--~~~iyv~GG~~~~~  208 (387)
                      .++. .++.+|+....       ...+.+||+..+  .-..+....     .. . .-...+..  ++.+||+.+...  
T Consensus        95 gia~d~~g~l~v~d~~-------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~--  165 (329)
T 3fvz_A           95 GLSIDTDGNYWVTDVA-------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN--  165 (329)
T ss_dssp             EEEECTTSCEEEEETT-------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC--
T ss_pred             EEEECCCCCEEEEECC-------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC--
Confidence            3444 36778887642       246888998765  222222100     00 0 11223333  689999976322  


Q ss_pred             CCCCCceEEEEeCCCCccccCeEEcCCCCCC----cccccceeEEEE--C-CEEEEEeeeCCeEEEEECCCCceeecccc
Q 044903          209 SSDVAKSVEKWDLMNGEKNSRWEKTGELKDG----RFSREAIDAVGW--K-GKLCLVNVKGAEGAVYDVVANTWDDMREG  281 (387)
Q Consensus       209 ~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~----~~~~~~~~~v~~--~-g~lyv~gg~~~~i~~yD~~~~~W~~~~~~  281 (387)
                           ..+.+||+....    -..+......    .........+.+  + |.||+.......+.+||+++++....-..
T Consensus       166 -----~~I~~~~~~g~~----~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~  236 (329)
T 3fvz_A          166 -----SRIVQFSPSGKF----VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH  236 (329)
T ss_dssp             -----CEEEEECTTSCE----EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             -----CeEEEEcCCCCE----EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence                 368888855443    2333211110    000011223333  4 89999977678999999986655432111


Q ss_pred             ccCCCCCcEEEEeCCeEEEEeC-------CCCeEEEEeCCCCceEEccc--cccccCceeEE-EeCCeEEEEecCCceEE
Q 044903          282 MVRGWRGPVAAMDEEVLYGIDE-------NSCTLSKYDEVMDDWKEVVK--SDLLKGARHAA-AGGGRVCAVCENGGGIV  351 (387)
Q Consensus       282 ~~~~~~~~~~~~~~g~ly~~g~-------~~~~v~~yd~~~~~W~~v~~--~~~~~~~~~~~-~~~~~l~v~gg~~~~i~  351 (387)
                      ...+.....++...+.+|...+       ....+.+||..+.+......  .........++ .-+|.|||....++.|.
T Consensus       237 ~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          237 ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            1111111122222344444443       34579999988776555422  12222334444 34679999987788999


Q ss_pred             EEEecC
Q 044903          352 VVDVKA  357 (387)
Q Consensus       352 v~d~~~  357 (387)
                      +|++..
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999873

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.43  E-value=0.011  Score=52.96  Aligned_cols=183  Identities=11%  Similarity=0.068  Sum_probs=100.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceee-eEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWC-AAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++..++.|+.+       ..+.+||..+.+......+....... ..+. -+++.++.|+.+.        .+.+||..+
T Consensus       108 ~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------NIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCCEEEEEcCC-------CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC--------cEEEEeCCC
Confidence            45566666532       46888999887754432222111111 1222 2456666666533        688999988


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYG  300 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~  300 (387)
                      .+    ....-.....     ....+.+  ++..++.++....+.+||+.+.+-...-. ...  ...+++. .+++.++
T Consensus       173 ~~----~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~--~v~~~~~s~~~~~l~  240 (337)
T 1gxr_A          173 QT----LVRQFQGHTD-----GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS--QIFSLGYCPTGEWLA  240 (337)
T ss_dssp             TE----EEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS--CEEEEEECTTSSEEE
T ss_pred             Cc----eeeeeecccC-----ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCC--ceEEEEECCCCCEEE
Confidence            76    3322211111     1223333  66666777767789999998764322211 111  1122222 3566777


Q ss_pred             EeCCCCeEEEEeCCCCceEEccccccccCce-e-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          301 IDENSCTLSKYDEVMDDWKEVVKSDLLKGAR-H-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~-~-~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++..++.+.+||..+..-..+   ....... . ....++++++.++.++.+.+||....
T Consensus       241 ~~~~~~~i~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          241 VGMESSNVEVLHVNKPDKYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             EEETTSCEEEEETTSSCEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEcCCCcEEEEECCCCCeEEE---cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence            777788999999987643222   1122222 2 22336788888788889999998854

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.41  E-value=0.006  Score=54.95  Aligned_cols=175  Identities=7%  Similarity=0.030  Sum_probs=91.8

Q ss_pred             ccEEEeCCCCceeeCCCCCCCceeeeEEee-CC-EEEEEecCCCCCCCCCCce-EEEEeCCCCccccCeEEc--CCCCCC
Q 044903          165 RPLIFDPICRTWTFGPELVTPRRWCAAGYS-RG-AVYVASGIGSQFSSDVAKS-VEKWDLMNGEKNSRWEKT--GELKDG  239 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~-v~vyd~~t~~~~~~W~~~--~~~~~~  239 (387)
                      .+.+||..+++....-+..  ......+.. ++ .+|+.+....        . +.+|+...+..   -...  ..++..
T Consensus       109 ~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~--------~~i~~~~~~~~g~---~~~~~~~~~~~~  175 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGLILIDRSSA--------NTVRRFKIDADGV---LFDTGQEFISGG  175 (331)
T ss_dssp             EEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCEEEEEETTT--------TEEEEEEECTTCC---EEEEEEEEECSS
T ss_pred             cEEEEECCCCCeEEEEECC--CCccceEECCCCCEEEEEecCCC--------ceEEEEEECCCCc---EeecCCccccCC
Confidence            7899999988765432221  111222222 33 5887765422        3 66776654330   1110  000111


Q ss_pred             cccccceeEEEECCE-EEEEeeeCCeEEEEECCCCce----eeccccccCCCCCcEEEE-eCCe-EEEEeCCCCeEEEEe
Q 044903          240 RFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANTW----DDMREGMVRGWRGPVAAM-DEEV-LYGIDENSCTLSKYD  312 (387)
Q Consensus       240 ~~~~~~~~~v~~~g~-lyv~gg~~~~i~~yD~~~~~W----~~~~~~~~~~~~~~~~~~-~~g~-ly~~g~~~~~v~~yd  312 (387)
                      ...  ...+..-+|+ +|+.+.....+.+||+.+.+.    ..++.    +.....+++ .+|+ ||+.....+.|.+||
T Consensus       176 ~~~--~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          176 TRP--FNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             SSE--EEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred             CCc--cceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence            100  0112222564 777765557899999987764    22221    111122232 3444 777765566799999


Q ss_pred             CCCCceEEccccccc-----cCce----eEEEeCC-eEEEEecCCceEEEEEecCC
Q 044903          313 EVMDDWKEVVKSDLL-----KGAR----HAAAGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       313 ~~~~~W~~v~~~~~~-----~~~~----~~~~~~~-~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++.+.+.+...+..     ....    ....-+| .||+.+..++.+.+||+...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            998877555432211     1111    1333444 56777666789999999854

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.40  E-value=0.0028  Score=58.22  Aligned_cols=185  Identities=9%  Similarity=0.062  Sum_probs=97.0

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++..++.|+.+       ..+.+||..+++-...-.-...........- +..+++.|+.+.        .+.+||..+.
T Consensus       138 dg~~l~sgs~d-------~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~--------~v~iwd~~~~  202 (344)
T 4gqb_B          138 SGTQAVSGSKD-------ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDN--------RILLWDTRCP  202 (344)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTS--------CEEEEETTSS
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccc--------cccccccccc
Confidence            56666666632       3578899887754331111111111111112 335777777644        6789999887


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEe-CC-eE
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMD-EE-VL  298 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~-~g-~l  298 (387)
                      +    -...-......   ....++.+   ++++++.|+.+..+.+||..+.+-. .+.. .  ...-.+++.. ++ ++
T Consensus       203 ~----~~~~~~~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-h--~~~v~~v~fsp~g~~~  272 (344)
T 4gqb_B          203 K----PASQIGCSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-H--SQCVTGLVFSPHSVPF  272 (344)
T ss_dssp             S----CEEECC----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC-C--SSCEEEEEECSSSSCC
T ss_pred             c----eeeeeecceee---ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC-C--CCCEEEEEEccCCCeE
Confidence            6    32221111110   01222222   4567777777788999998765321 1111 0  1011233332 33 56


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe---CCeEEEEecCCceEEEEEecCC
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG---GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~---~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+.++.++.|.+||..+.+-..   ...+......+.+   +..+++.++.++.|.+|++...
T Consensus       273 lasgs~D~~i~vwd~~~~~~~~---~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          273 LASLSEDCSLAVLDSSLSELFR---SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEETTSCEEEECTTCCEEEE---ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEEEeCCCeEEEEECCCCcEEE---EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            6667788999999998774322   2222333323332   4467777788899999998754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.40  E-value=0.0073  Score=55.21  Aligned_cols=189  Identities=14%  Similarity=0.193  Sum_probs=105.6

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC--CCceeeeEE-eeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV--TPRRWCAAG-YSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~--~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      ++.+++.|+.+       ..+.+||..+++|.....+.  ....-.+.+ .-+++.++.|+.+.        .+.+||..
T Consensus        27 ~g~~las~~~D-------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--------~v~iw~~~   91 (345)
T 3fm0_A           27 AGTLLASCGGD-------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--------TTCIWKKN   91 (345)
T ss_dssp             TSSCEEEEETT-------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS--------CEEEEEEC
T ss_pred             CCCEEEEEcCC-------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC--------cEEEEEcc
Confidence            55666666632       35778888887765322111  111111122 12566677776544        56778877


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEE-eCCeE
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAM-DEEVL  298 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~-~~g~l  298 (387)
                      ++.    +..+..+....   ....++.+  +|++.+.++.+..+.++|..+. .+..+.........-.+++. .++.+
T Consensus        92 ~~~----~~~~~~~~~h~---~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           92 QDD----FECVTTLEGHE---NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             CC-----EEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             CCC----eEEEEEccCCC---CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            776    55443322111   11223333  5677777777788999998764 33322210000000112222 24567


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCeEEEEecCCceEEEEEec
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ++.++.++.+.+||.++..|..+............+  ..+|+.++.|+.++.+.+||..
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            777778899999999998887665554444332222  3467888888888889999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.37  E-value=0.019  Score=53.49  Aligned_cols=105  Identities=10%  Similarity=-0.008  Sum_probs=63.0

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCe-EEEEeCCCCeEEEEeCCCCce--EEccccccc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEV-LYGIDENSCTLSKYDEVMDDW--KEVVKSDLL  327 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~-ly~~g~~~~~v~~yd~~~~~W--~~v~~~~~~  327 (387)
                      +|++.+.|+....+.+||..+.+-...-...... ...+++.. ++. +++.++.++.|.+||..+..-  ..+... ..
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~  335 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC-SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EG  335 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TT
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccccCC-CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CC
Confidence            6777777777788999999776422111100111 11122322 344 777777889999999987532  221110 11


Q ss_pred             cCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          328 KGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .....+...++++++.++.++.+.+||+...
T Consensus       336 ~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          336 TPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             SCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             CCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence            1123345568888888888899999998853

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.35  E-value=0.048  Score=51.57  Aligned_cols=184  Identities=11%  Similarity=0.076  Sum_probs=95.0

Q ss_pred             EeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          144 SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       144 ~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ..++..++.|+.+       ..+.+||..+.+-...-..........+..-+++.++.|+.+.        .+.+||..+
T Consensus       277 ~~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg--------~i~vwd~~~  341 (464)
T 3v7d_B          277 SGHGNIVVSGSYD-------NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT--------TIRIWDLEN  341 (464)
T ss_dssp             EEETTEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEEEETTT
T ss_pred             cCCCCEEEEEeCC-------CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCC
Confidence            3445556666532       4678899887654331111111111222222456666666543        688999988


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeC
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE  303 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~  303 (387)
                      .+    -...-...     .....++.+++...+.++.+..+.+||+.+..-.....  ............++.+.+.++
T Consensus       342 ~~----~~~~~~~h-----~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          342 GE----LMYTLQGH-----TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             TE----EEEEECCC-----SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE
T ss_pred             Cc----EEEEEeCC-----CCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec
Confidence            76    22211111     11244556677777777777899999998754221111  111112223344666666665


Q ss_pred             CCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCce--EEEEE
Q 044903          304 NSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG--IVVVD  354 (387)
Q Consensus       304 ~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~--i~v~d  354 (387)
                       ++.+.+||.++.+-......+....-..+...++.+++.++.++.  ++++|
T Consensus       411 -dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          411 -ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             -TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             -CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence             789999999887654422222222223333345555555443433  34444

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.35  E-value=0.012  Score=55.20  Aligned_cols=185  Identities=11%  Similarity=0.091  Sum_probs=98.5

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.+++.|+.+       ..+.+||..+.+....-..........+..-++++++.|+.+.        .+.+||..+.+
T Consensus       119 ~~~~l~s~s~D-------g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~--------~i~iwd~~~~~  183 (410)
T 1vyh_C          119 VFSVMVSASED-------ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM--------TIKLWDFQGFE  183 (410)
T ss_dssp             SSSEEEEEESS-------SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS--------CCCEEETTSSC
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCc
Confidence            45666766632       4678899887764331111111111111122567777777644        56788887655


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEe
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g  302 (387)
                          -..  .+....   ....++.+  ++...+.|+.+..+.+||..++.-...-.. ...+ -..+. ..++.+++.+
T Consensus       184 ----~~~--~~~~h~---~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~-v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          184 ----CIR--TMHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREW-VRMVRPNQDGTLIASC  252 (410)
T ss_dssp             ----EEE--CCCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSC-EEEEEECTTSSEEEEE
T ss_pred             ----eeE--EEcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCcc-EEEEEECCCCCEEEEE
Confidence                222  121110   11223333  566667777778999999987653221110 0110 01112 2356777788


Q ss_pred             CCCCeEEEEeCCCCceEEccccccccCceeEEE----------------------eCCeEEEEecCCceEEEEEecCC
Q 044903          303 ENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA----------------------GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~----------------------~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.|.+||..+..-....  ........++.                      ..+.+++.|+.++.+.+||+.++
T Consensus       253 s~D~~v~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAEL--REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  328 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             cCCCeEEEEECCCCceeeEe--cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            88899999999876544321  11111111111                      12667778778888999998754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.35  E-value=0.014  Score=52.54  Aligned_cols=221  Identities=8%  Similarity=-0.032  Sum_probs=111.8

Q ss_pred             CeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEE-eCC-EEEEEcCccCCCCCCCCccEEEeCCCCce
Q 044903           99 PIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LSG-KLILLAATTHNFNPALTRPLIFDPICRTW  176 (387)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~vydp~t~~W  176 (387)
                      ...+.++|+.+++....-..+..                . ..++. -++ .+|+.+..       ...++++|+.+++.
T Consensus        19 ~~~v~~~d~~~~~~~~~~~~~~~----------------~-~~~~~s~dg~~l~~~~~~-------~~~i~~~d~~~~~~   74 (331)
T 3u4y_A           19 LRRISFFSTDTLEILNQITLGYD----------------F-VDTAITSDCSNVVVTSDF-------CQTLVQIETQLEPP   74 (331)
T ss_dssp             GTEEEEEETTTCCEEEEEECCCC----------------E-EEEEECSSSCEEEEEEST-------TCEEEEEECSSSSC
T ss_pred             CCeEEEEeCcccceeeeEEccCC----------------c-ceEEEcCCCCEEEEEeCC-------CCeEEEEECCCCce
Confidence            34688899888766443222221                0 12222 244 46666542       14789999988874


Q ss_pred             -ee-CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE-ECC
Q 044903          177 -TF-GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKG  253 (387)
Q Consensus       177 -~~-l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g  253 (387)
                       .. +.....+....+...-+..+| ++...     .....+.+||..+++    -...-+....     ....+. -+|
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~-----~~~~~i~v~d~~~~~----~~~~~~~~~~-----~~~~~~spdg  139 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAV-TVTGL-----NHPFNMQSYSFLKNK----FISTIPIPYD-----AVGIAISPNG  139 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEE-ECCCS-----SSSCEEEEEETTTTE----EEEEEECCTT-----EEEEEECTTS
T ss_pred             eEEecccCCCCccceEECCCCCEEE-EecCC-----CCcccEEEEECCCCC----eEEEEECCCC-----ccceEECCCC
Confidence             22 222112221112222234566 32221     112378999998887    4433222111     122222 355


Q ss_pred             E-EEEEeeeCCe-EEEEECCCCc-eeec-cccccCCCCCcEEEE-eCC-eEEEEeCCCCeEEEEeCCCCce-EEcccccc
Q 044903          254 K-LCLVNVKGAE-GAVYDVVANT-WDDM-REGMVRGWRGPVAAM-DEE-VLYGIDENSCTLSKYDEVMDDW-KEVVKSDL  326 (387)
Q Consensus       254 ~-lyv~gg~~~~-i~~yD~~~~~-W~~~-~~~~~~~~~~~~~~~-~~g-~ly~~g~~~~~v~~yd~~~~~W-~~v~~~~~  326 (387)
                      + +|+.+..... +.+||...+. -... ......+.....++. .+| .+|+.+..++.+.+||+++.+. +.+...+.
T Consensus       140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~  219 (331)
T 3u4y_A          140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT  219 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC
Confidence            4 7777665556 8888876432 1111 110111111122232 234 4888887788999999987765 11222222


Q ss_pred             ccCcee-EEEeCCe-EEEEecCCceEEEEEecCC
Q 044903          327 LKGARH-AAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       327 ~~~~~~-~~~~~~~-l~v~gg~~~~i~v~d~~~~  358 (387)
                      ...... .+.-+|+ +|+....+..+.++|..++
T Consensus       220 ~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          220 NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            222222 3334565 7777555677999998854

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.017  Score=52.44  Aligned_cols=189  Identities=15%  Similarity=0.126  Sum_probs=95.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.+++.|+.+       ..+.+||..+.+-...-.-...........-+++.++.++.+.        .+.+||..+.+
T Consensus        43 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~  107 (369)
T 3zwl_B           43 EGDLLFSCSKD-------SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADY--------SIKLWDVSNGQ  107 (369)
T ss_dssp             TSCEEEEEESS-------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTT--------EEEEEETTTCC
T ss_pred             CCCEEEEEeCC-------CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCc
Confidence            55666666532       3678889877654331111111111111112456666666543        68899988877


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCc----eeeccccc------cCCC-CCc
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANT----WDDMREGM------VRGW-RGP  289 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~----W~~~~~~~------~~~~-~~~  289 (387)
                          -...-....+.    ......-++..++.++..     ..+.+||..+..    +.......      ..+. ...
T Consensus       108 ----~~~~~~~~~~v----~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          108 ----CVATWKSPVPV----KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             ----EEEEEECSSCE----EEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             ----EEEEeecCCCe----EEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence                33322222111    011122245555555544     578888876442    11111000      0000 111


Q ss_pred             EEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          290 VAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       290 ~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++ ..+++.++.++.++.|.+||..+. ...+............+  ..+++.++.++.++.+.+||..+.
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            122 224566677777899999999873 12222222222222222  337778888778889999999854

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.33  E-value=0.014  Score=52.02  Aligned_cols=227  Identities=9%  Similarity=0.027  Sum_probs=114.6

Q ss_pred             eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEE-eC-CEEEEEcCccCCCCCCCCccEEEeCCCCcee
Q 044903          100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LS-GKLILLAATTHNFNPALTRPLIFDPICRTWT  177 (387)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~  177 (387)
                      ..++.||+.++++..+.. +.   ....        ......++. .+ +.+|+....        +.+++||+. ++..
T Consensus        46 ~~i~~~d~~~g~~~~~~~-~~---~~~~--------~~~~~~i~~~~~~g~l~v~~~~--------~~l~~~d~~-g~~~  104 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICK-PE---VNGY--------GGIPAGCQCDRDANQLFVADMR--------LGLLVVQTD-GTFE  104 (314)
T ss_dssp             CEEEEECTTTCCEEEEEC-CE---ETTE--------ECCEEEEEECSSSSEEEEEETT--------TEEEEEETT-SCEE
T ss_pred             CEEEEEeCCCCcEEEEEe-cc---cCCC--------CCCCceEEEecCCCcEEEEECC--------CCEEEEeCC-CCEE
Confidence            357888988877765432 10   0000        001133333 34 678887541        368899998 7777


Q ss_pred             eC-CCCCC----CceeeeEEeeCCEEEEEecCCCC-------CCCCCCceEEEEeCCCCccccCeEEcCC-CCCCccccc
Q 044903          178 FG-PELVT----PRRWCAAGYSRGAVYVASGIGSQ-------FSSDVAKSVEKWDLMNGEKNSRWEKTGE-LKDGRFSRE  244 (387)
Q Consensus       178 ~l-~~~~~----~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~~~v~vyd~~t~~~~~~W~~~~~-~~~~~~~~~  244 (387)
                      .+ .....    ......+..-++++|+.......       ........+..||+. .+    ...+.. ...+     
T Consensus       105 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~~~~~~~~~~~-----  174 (314)
T 1pjx_A          105 EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ----MIQVDTAFQFP-----  174 (314)
T ss_dssp             ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC----EEEEEEEESSE-----
T ss_pred             EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC----EEEeccCCCCc-----
Confidence            66 33221    11112222236789887643210       001122467888876 55    544321 1100     


Q ss_pred             ceeEEE----ECC-EEEEEeeeCCeEEEEECC-CCceeeccc--cccCCC-CC-cEEEE-eCCeEEEEeCCCCeEEEEeC
Q 044903          245 AIDAVG----WKG-KLCLVNVKGAEGAVYDVV-ANTWDDMRE--GMVRGW-RG-PVAAM-DEEVLYGIDENSCTLSKYDE  313 (387)
Q Consensus       245 ~~~~v~----~~g-~lyv~gg~~~~i~~yD~~-~~~W~~~~~--~~~~~~-~~-~~~~~-~~g~ly~~g~~~~~v~~yd~  313 (387)
                      ...+..    -+| .+|+.......+.+||+. +++......  ..+... .. ..+++ .+|+||+.....+.|.+||+
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence            011222    245 477765445688999876 343321110  011110 11 12332 35789988766778999999


Q ss_pred             CCCceEEccccccccCceeEE-EeCCe-EEEEecCCceEEEEEecCC
Q 044903          314 VMDDWKEVVKSDLLKGARHAA-AGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       314 ~~~~W~~v~~~~~~~~~~~~~-~~~~~-l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.+-......+. ....+++ .-+|+ ||+.+..++.++++|+...
T Consensus       255 ~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          255 DGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            8443322212221 2223333 23565 8888666789999998743

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.33  E-value=0.0075  Score=54.96  Aligned_cols=190  Identities=13%  Similarity=0.084  Sum_probs=97.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.+++.|+.+       ..+.+||..+.+-...-+.........+..-+++..+.||.+.        .+.+||..+..
T Consensus        66 d~~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--------~v~iw~~~~~~  130 (340)
T 1got_B           66 DSRLLLSASQD-------GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN--------ICSIYNLKTRE  130 (340)
T ss_dssp             TSSEEEEEETT-------TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC--------EEEEEETTTCS
T ss_pred             CCCEEEEEeCC-------CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC--------eEEEEECccCC
Confidence            45566666532       3577888776653321111111111111222556667776543        67888887654


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEeCC
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDEN  304 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~  304 (387)
                      ..  ......+...... -.+....-+++ ++.++.+..+.+||+.+.+-...-.. ..+ .-.+++. .++++++.++.
T Consensus       131 ~~--~~~~~~~~~h~~~-v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~-~v~~~~~~~~~~~l~sg~~  204 (340)
T 1got_B          131 GN--VRVSRELAGHTGY-LSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG-HTG-DVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             BS--CEEEEEEECCSSC-EEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC-CSS-CEEEEEECTTSSEEEEEET
T ss_pred             Cc--ceeEEEecCCCcc-EEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC-CCC-ceEEEEECCCCCEEEEEeC
Confidence            11  2211111100000 00112223555 44555557899999987754322110 111 0112222 35677888888


Q ss_pred             CCeEEEEeCCCCceEEccccccccCce--eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          305 SCTLSKYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       305 ~~~v~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.|.+||..+..-..  .........  .+...+++.++.|+.++.+.+||....
T Consensus       205 d~~v~~wd~~~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          205 DASAKLWDVREGMCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             TSCEEEEETTTCSEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCcEEEEECCCCeeEE--EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            8999999997764322  222222222  222346788888888889999998753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.32  E-value=0.033  Score=56.89  Aligned_cols=189  Identities=8%  Similarity=-0.036  Sum_probs=100.7

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      -++..++.|+.+       ..+.+||..+++....-.-........+..-+++..+.|+.+.        .+.+||..++
T Consensus        65 ~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~vw~~~~~  129 (814)
T 3mkq_A           65 ARKNWIIVGSDD-------FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL--------TVKLWNWENN  129 (814)
T ss_dssp             GGGTEEEEEETT-------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTS--------EEEEEEGGGT
T ss_pred             CCCCEEEEEeCC-------CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCC--------EEEEEECCCC
Confidence            355666666532       4678999888765432111111111111122455555555432        6888998776


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe---CCeEE
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---EEVLY  299 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---~g~ly  299 (387)
                           |.....+.....  .....+..  ++.+++.++....+.+||..+..-...-.. ........++..   ++..+
T Consensus       130 -----~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          130 -----WALEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             -----SEEEEEEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC-CCTTCCCEEEECCSTTCCEE
T ss_pred             -----ceEEEEEcCCCC--cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec-CCCCCEEEEEEEECCCCCEE
Confidence                 222221111000  01222222  466777777778899999876532211110 110112233332   56778


Q ss_pred             EEeCCCCeEEEEeCCCCceEEccccccccCce--eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          300 GIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.++.+.+||..+..-  +..........  .....++.+++.|+.++.+.+||..+.
T Consensus       202 ~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             EEECTTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEeCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            8888889999999977643  22222222222  233446778888788889999998853

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.31  E-value=0.012  Score=53.98  Aligned_cols=175  Identities=11%  Similarity=0.060  Sum_probs=92.0

Q ss_pred             CccEEEeCCCCceeeCCCCC---CCceeeeEE-eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          164 TRPLIFDPICRTWTFGPELV---TPRRWCAAG-YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~---~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      ..+.+||..+++-.......   ....-.+.+ .-+++.++.|+.+.        .+.+||..+++    -...-.-.. 
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~--------~i~iwd~~~~~----~~~~~~~h~-  169 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI--------CIKVWDLAQQV----VLSSYRAHA-  169 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE----EEEEECCCS-
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC--------eEEEEECCCCc----EEEEEcCcC-
Confidence            45788898876532211110   001111112 22567777776544        68899998876    222111000 


Q ss_pred             cccccceeEEEE--CC-EEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEE--eCCeEEEEeCCCCeEEEEeC
Q 044903          240 RFSREAIDAVGW--KG-KLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAM--DEEVLYGIDENSCTLSKYDE  313 (387)
Q Consensus       240 ~~~~~~~~~v~~--~g-~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~--~~g~ly~~g~~~~~v~~yd~  313 (387)
                          .....+.+  ++ .+++.++.+..+.+||..+.+-. .+.. ...+....+++.  .++++++.++.++.|.+||.
T Consensus       170 ----~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          170 ----AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             ----SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             ----CceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence                11222222  33 46666777788999999876533 2221 111111122332  25678888888899999999


Q ss_pred             CCCceEEccccccccCceeEEEe--CC-eEEEEecCCceEEEEEecCC
Q 044903          314 VMDDWKEVVKSDLLKGARHAAAG--GG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       314 ~~~~W~~v~~~~~~~~~~~~~~~--~~-~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+.+  .+..+.........+.+  ++ ++++.|+.++.|.+||...+
T Consensus       245 ~~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          245 KSTS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             CC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             CCCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            7653  23233333333222222  34 56777777888999998754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.28  E-value=0.044  Score=51.34  Aligned_cols=183  Identities=14%  Similarity=0.057  Sum_probs=97.7

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++.+++.|+.+       ..+.+||..+.+-...  +........++.+  ++..++.|+.+.        .+.+||..+
T Consensus       161 ~~~~l~sgs~D-------~~i~iwd~~~~~~~~~--~~~h~~~V~~v~~~p~~~~l~s~s~D~--------~i~~wd~~~  223 (410)
T 1vyh_C          161 SGKLLASCSAD-------MTIKLWDFQGFECIRT--MHGHDHNVSSVSIMPNGDHIVSASRDK--------TIKMWEVQT  223 (410)
T ss_dssp             TSSEEEEEETT-------SCCCEEETTSSCEEEC--CCCCSSCEEEEEECSSSSEEEEEETTS--------EEEEEETTT
T ss_pred             CCCEEEEEeCC-------CeEEEEeCCCCceeEE--EcCCCCCEEEEEEeCCCCEEEEEeCCC--------eEEEEECCC
Confidence            56677776643       3567788876543321  1111111111222  456666666543        788899888


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE--------
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--------  293 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--------  293 (387)
                      +.    -...-.-..     .....+.  -+|.+++.|+.+..+.+||..+......-......  -.+++.        
T Consensus       224 ~~----~~~~~~~h~-----~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~  292 (410)
T 1vyh_C          224 GY----CVKTFTGHR-----EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV--VECISWAPESSYSS  292 (410)
T ss_dssp             CC----EEEEEECCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECCSCGGGG
T ss_pred             Cc----EEEEEeCCC-----ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce--EEEEEEcCcccccc
Confidence            76    322110010     0111222  25677777777788999998776543211000000  001111        


Q ss_pred             -------------eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCce--eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          294 -------------DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 -------------~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                                   ..+.+.+.++.++.|.+||..+..  .+..........  .....+++.++.|+.++.+.+||..+.
T Consensus       293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                         125567777788999999997763  222222222222  223346777888888899999999754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.27  E-value=0.058  Score=49.52  Aligned_cols=170  Identities=14%  Similarity=0.035  Sum_probs=98.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCC--CCCC
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGE--LKDG  239 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~--~~~~  239 (387)
                      ..+..+++.......+.+-. .+ ..+.+.  .++.||+.--.        ...+..+++....    -+.+..  +..+
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~-~~-~~~l~~d~~~~~ly~~D~~--------~~~I~r~~~~g~~----~~~~~~~~~~~p  118 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNL-EN-AIALDFHHRRELVFWSDVT--------LDRILRANLNGSN----VEEVVSTGLESP  118 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSC-SC-EEEEEEETTTTEEEEEETT--------TTEEEEEETTSCS----CEEEECSSCSCC
T ss_pred             cceEEEeCCCCeeEEeecCC-Cc-eEEEEEeccccEEEEEecc--------CCceEEEecCCCC----ceEEEeCCCCCc
Confidence            34677777776665543211 11 122222  36789987432        2378888888765    444421  2111


Q ss_pred             cccccceeEEE-ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEEe--CCeEEEEeCCC-CeEEEEeCC
Q 044903          240 RFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD--EEVLYGIDENS-CTLSKYDEV  314 (387)
Q Consensus       240 ~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~--~g~ly~~g~~~-~~v~~yd~~  314 (387)
                      .     ..++- .++.||+.......|.++|++...-+.+..   .....+ .+++.  ++.||+.+... +.|++++++
T Consensus       119 ~-----glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          119 G-----GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             C-----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             c-----EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            1     12222 378999987666789999987654333221   111122 34444  68999998655 789999998


Q ss_pred             CCceEEccccccccCceeEEE--eCCeEEEEecCCceEEEEEec
Q 044903          315 MDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       315 ~~~W~~v~~~~~~~~~~~~~~--~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ...-+.+... ....+.+++.  .+++||+.-.....|.++|..
T Consensus       191 G~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          191 GSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             SCSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            7544443221 1222344444  378888886666778888876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.014  Score=54.05  Aligned_cols=186  Identities=12%  Similarity=0.011  Sum_probs=96.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCc--------------eeeeEEeeCCEEEEEecCCCCCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR--------------RWCAAGYSRGAVYVASGIGSQFSSD  211 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r--------------~~~~~~~~~~~iyv~GG~~~~~~~~  211 (387)
                      ++..++.++.+       ..+.+||..+.+-...-......              .....+...+..+++|+.+.     
T Consensus       160 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----  227 (425)
T 1r5m_A          160 DGTHIISMDVE-------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG-----  227 (425)
T ss_dssp             TSSEEEEEETT-------CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGG-----
T ss_pred             CCCEEEEEecC-------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC-----
Confidence            45555555532       35788888777654321111110              01122222334455655433     


Q ss_pred             CCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEE
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                         .+.+||..+.+..   ..+.....+.    ...+..-++++++.++....+.+||..+.+-...-...  ...-.++
T Consensus       228 ---~i~~~d~~~~~~~---~~~~~~~~~i----~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~  295 (425)
T 1r5m_A          228 ---AIFVYQITEKTPT---GKLIGHHGPI----SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSA  295 (425)
T ss_dssp             ---CEEEEETTCSSCS---EEECCCSSCE----EEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEE
T ss_pred             ---eEEEEEcCCCcee---eeeccCCCce----EEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC--CccEEEE
Confidence               6889998877621   1121111110    01122225666667666678999998765432211111  1111233


Q ss_pred             EEe-CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCcee--EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          292 AMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       292 ~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.. ++ +++.++.++.+.+||..+.+-..  ..........  ....+++++++++.++.+.+||+...
T Consensus       296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          296 SWVGDD-KVISCSMDGSVRLWSLKQNTLLA--LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             EEETTT-EEEEEETTSEEEEEETTTTEEEE--EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred             EECCCC-EEEEEeCCCcEEEEECCCCcEeE--ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            333 44 66666778999999997764322  2222222222  22346788888888889999999854

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.25  E-value=0.022  Score=51.80  Aligned_cols=171  Identities=13%  Similarity=0.045  Sum_probs=92.1

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..+.+||..+.+-...-.-........+..-++++++.|+.+.        .+.+||..+..    -...-.-..     
T Consensus       164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~--------~v~~wd~~~~~----~~~~~~~h~-----  226 (340)
T 1got_B          164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA--------SAKLWDVREGM----CRQTFTGHE-----  226 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCS----EEEEECCCS-----
T ss_pred             CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCC--------cEEEEECCCCe----eEEEEcCCc-----
Confidence            4578889887754331111111111111222567777777644        67889988776    222111010     


Q ss_pred             cceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCC-cEEE-EeCCeEEEEeCCCCeEEEEeCCCCceE
Q 044903          244 EAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAA-MDEEVLYGIDENSCTLSKYDEVMDDWK  319 (387)
Q Consensus       244 ~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~  319 (387)
                      ....++.+  ++.+++.|+.+..+.+||..+.+-...-. ....... .+++ ..++++.+.++.++.|.+||..+..  
T Consensus       227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~--  303 (340)
T 1got_B          227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--  303 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--
T ss_pred             CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc--
Confidence            11222332  56777777777889999998764221111 0000001 1222 2356788888888999999987643  


Q ss_pred             EccccccccCceeE--EEeCCeEEEEecCCceEEEEE
Q 044903          320 EVVKSDLLKGARHA--AAGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       320 ~v~~~~~~~~~~~~--~~~~~~l~v~gg~~~~i~v~d  354 (387)
                      .+.....+.....+  ...+|+.++.|+.++.+.+||
T Consensus       304 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            33333333333222  234677788877788888875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.24  E-value=0.0041  Score=57.20  Aligned_cols=191  Identities=11%  Similarity=0.048  Sum_probs=97.7

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++.+++.|+.+       ..+.+||..++.|+.+..+........+..+  ++++++.|+.+.        .+.+||..+
T Consensus        22 ~g~~l~~~~~d-------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~--------~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTAT-------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR--------NAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSS-------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS--------SEEEC----
T ss_pred             CCCEEEEecCC-------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC--------eEEEEEcCC
Confidence            56666666532       4678899999888877666532222222222  456666666543        577777766


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCc-eeecccccc-CCCCCcEEEE-eCCeE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMV-RGWRGPVAAM-DEEVL  298 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~-~~~~~~~~~~-~~g~l  298 (387)
                      ..   .|.....+....   .....+.+  ++++.+.++....+.+||..+.+ |........ ....-.+++. .++++
T Consensus        87 ~~---~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           87 DG---TWKQTLVLLRLN---RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             -----CCCCEEECCCCS---SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             CC---ceeeeeEecccC---CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            53   122222111110   11222322  56666676666788999988764 543332111 1111122332 25667


Q ss_pred             EEEeCCCCeEEEEeCCCCceE----------------EccccccccCceeE--EEeCCeEEEEecCCceEEEEEecCC
Q 044903          299 YGIDENSCTLSKYDEVMDDWK----------------EVVKSDLLKGARHA--AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~----------------~v~~~~~~~~~~~~--~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.++.++.+.+||..+....                .+... ........  ...+++.++.++.++.+.+||+.+.
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            777778899999998643321                11122 12222222  2347788888788889999999865

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.24  E-value=0.027  Score=52.35  Aligned_cols=191  Identities=13%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceee-----CCCCCC-CceeeeEEee-CC-EEEEEecCCCCCCCCCCceEE
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF-----GPELVT-PRRWCAAGYS-RG-AVYVASGIGSQFSSDVAKSVE  217 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-----l~~~~~-~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~  217 (387)
                      ++.+++.|+.+       ..+.+||..++....     +..+.. ...-.+.+.. ++ .+++.|+.+.        .+.
T Consensus        93 ~~~~l~s~s~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg--------~i~  157 (402)
T 2aq5_A           93 NDNVIASGSED-------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN--------VIL  157 (402)
T ss_dssp             CTTEEEEEETT-------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS--------CEE
T ss_pred             CCCEEEEEeCC-------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC--------EEE
Confidence            56677776632       457888888775422     111111 1111112222 23 5777776543        688


Q ss_pred             EEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-Ee
Q 044903          218 KWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MD  294 (387)
Q Consensus       218 vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~  294 (387)
                      +||..+.+    ....-.....   ......+.+  ++.+++.++.+..+.+||+.+.+-...-.....+.....++ ..
T Consensus       158 iwd~~~~~----~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (402)
T 2aq5_A          158 VWDVGTGA----AVLTLGPDVH---PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS  230 (402)
T ss_dssp             EEETTTTE----EEEEECTTTC---CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred             EEECCCCC----ccEEEecCCC---CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence            99998877    4322100000   011223333  67777777777899999998765332210011111112233 34


Q ss_pred             CCeEEEEe---CCCCeEEEEeCCCCce-EEccccccccCceeEE-EeCCe-EEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGID---ENSCTLSKYDEVMDDW-KEVVKSDLLKGARHAA-AGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g---~~~~~v~~yd~~~~~W-~~v~~~~~~~~~~~~~-~~~~~-l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++++++.+   ..++.|.+||..+..- ..............++ ..+++ +++.|+.++.+.+||+.+.
T Consensus       231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred             CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence            67777777   5678899999976432 1111111112222222 33444 5556556889999999864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.23  E-value=0.011  Score=59.73  Aligned_cols=185  Identities=11%  Similarity=0.014  Sum_probs=104.9

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCC----Cceee-CC-CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEE
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPIC----RTWTF-GP-ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t----~~W~~-l~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      .++.||+.-.       ....++++++.+    ..-.. +. .+..+.. .+....+++||++-..        ...|.+
T Consensus       416 ~~~~Ly~sD~-------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g-lavD~~~g~LY~tD~~--------~~~I~v  479 (699)
T 1n7d_A          416 ASNRIYWSDL-------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDG-LAVDWIHSNIYWTDSV--------LGTVSV  479 (699)
T ss_dssp             TTTEEEECCT-------TTTSBEEEESCCCCC-CCCCCBCCSCC--CCC-EECCCSSSBCEECCTT--------TSCEEE
T ss_pred             ccCeEEEEec-------CCCeEEEEecCCCCCCcceEEEEeCCCCCcce-EEEEeeCCcEEEEecc--------CCeEEE
Confidence            3677888643       225688888875    11111 11 1112221 1111246789986322        236788


Q ss_pred             EeCCCCccccCeEEcCC--CCCCcccccceeEEE--ECCEEEEEeeeC-CeEEEEECCCCceeecc-ccccCCCCCcEEE
Q 044903          219 WDLMNGEKNSRWEKTGE--LKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVYDVVANTWDDMR-EGMVRGWRGPVAA  292 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~--~~~~~~~~~~~~~v~--~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~  292 (387)
                      +|+....    -+.+..  +..+      ...++  .+|.||+..... ..|+++++....-+.+. ..+  .+ ...++
T Consensus       480 ~d~dg~~----~~~l~~~~~~~P------~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l--~~-PnGla  546 (699)
T 1n7d_A          480 ADTKGVK----RKTLFREQGSKP------RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI--QW-PNGIT  546 (699)
T ss_dssp             EBSSSCC----EEEECCCSSCCC------CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSC--SS-CCCEE
T ss_pred             EecCCCc----eEEEEeCCCCCc------ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCC--CC-ccEEE
Confidence            8887765    344322  1211      11222  367889875332 57888877543332221 111  11 12234


Q ss_pred             E--eCCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          293 M--DEEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~--~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +  .+++||+.......|.++|++...-+.+... .....+.+++..++.||+.-..++.|.++|..++
T Consensus       547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred             EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence            3  3689999998778999999976544444332 2334456777788999999777889999997643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.23  E-value=0.076  Score=47.25  Aligned_cols=106  Identities=6%  Similarity=-0.119  Sum_probs=59.7

Q ss_pred             CEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CC----eEEEEeCCCCeEEEEeCCCCc----------
Q 044903          253 GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE----VLYGIDENSCTLSKYDEVMDD----------  317 (387)
Q Consensus       253 g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g----~ly~~g~~~~~v~~yd~~~~~----------  317 (387)
                      +.+++.++....+..++........+.........-.+++.. ++    .+++.++.++.|.+||..+..          
T Consensus       182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  261 (351)
T 3f3f_A          182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT  261 (351)
T ss_dssp             CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------
T ss_pred             CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc
Confidence            566666666656666666666654333211111111233333 33    677777788999999987531          


Q ss_pred             ----------------------------------eEEccccccccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          318 ----------------------------------WKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       318 ----------------------------------W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                                                        .+.+............+  ..++++++.|+.++.+.+||+...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             -----------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             ceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                                              12222222222222222  336788888888899999999854

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.22  E-value=0.019  Score=52.95  Aligned_cols=176  Identities=7%  Similarity=-0.043  Sum_probs=97.0

Q ss_pred             CccEEEeCCCCceeeCCCCC-CCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          164 TRPLIFDPICRTWTFGPELV-TPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      ..+.+||..+.+....-... ....-.+.+..  ++.+++.|+.+.        .+.+||..+..    ...+.......
T Consensus        96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~~----~~~~~~~~~~~  163 (383)
T 3ei3_B           96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG--------ATTLRDFSGSV----IQVFAKTDSWD  163 (383)
T ss_dssp             SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT--------EEEEEETTSCE----EEEEECCCCSS
T ss_pred             CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC--------EEEEEECCCCc----eEEEeccCCCC
Confidence            35788888877766543221 11122222333  346666666543        68889988776    65554322110


Q ss_pred             ccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCe-EEEEeCCCCeEEEEeCCC---
Q 044903          241 FSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEV-LYGIDENSCTLSKYDEVM---  315 (387)
Q Consensus       241 ~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~-ly~~g~~~~~v~~yd~~~---  315 (387)
                      .. -...+..-++.+.+.++....+.+||.....-..+..  ... .-.+++.. ++. +++.++.++.|.+||..+   
T Consensus       164 ~~-v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  239 (383)
T 3ei3_B          164 YW-YCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL--HKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD  239 (383)
T ss_dssp             CC-EEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC--SSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred             CC-eEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc--CCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence            00 0011222356677777777899999985443333321  111 11122322 344 777777889999999986   


Q ss_pred             -CceEEccccccccCcee-EE-Ee-CCeEEEEecCCceEEEEEecCC
Q 044903          316 -DDWKEVVKSDLLKGARH-AA-AG-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       316 -~~W~~v~~~~~~~~~~~-~~-~~-~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                       .....  ... ...... +. .- +++.++.++.++.+.+||..+.
T Consensus       240 ~~~~~~--~~~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          240 KNSYIA--EMP-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             TTCEEE--EEE-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             ccceEE--Eec-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence             32222  111 222222 22 23 6788888888899999998854

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.21  E-value=0.065  Score=50.33  Aligned_cols=186  Identities=11%  Similarity=0.082  Sum_probs=99.6

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CC-EEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RG-AVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      +++.+++++...    ....++++|..+.+...+...+..  ..+.+.. ++ +|++.+..+.      ...+.++|..+
T Consensus       189 dg~~la~~s~~~----~~~~i~~~d~~tg~~~~l~~~~~~--~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~~  256 (415)
T 2hqs_A          189 DGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTG------SLNLYVMDLAS  256 (415)
T ss_dssp             TSSEEEEEECTT----SSCEEEEEETTTCCEEEEECCSSC--EEEEEECTTSSEEEEEECTTS------SCEEEEEETTT
T ss_pred             CCCEEEEEEecC----CCcEEEEEECCCCcEEEeecCCCc--ccCEEEcCCCCEEEEEEecCC------CceEEEEECCC
Confidence            555555554322    225789999999887766543321  1122222 34 4554544322      23689999999


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEE--CCE-EEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEE-EeCCe
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEV  297 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~  297 (387)
                      .+    ...+......      ...+.+  +|+ |++.+...  ..++.+|+.+..-..+...   +.....++ ..+|+
T Consensus       257 ~~----~~~l~~~~~~------~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~spdG~  323 (415)
T 2hqs_A          257 GQ----IRQVTDGRSN------NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---GSQNQDADVSSDGK  323 (415)
T ss_dssp             CC----EEECCCCSSC------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS---SSEEEEEEECTTSS
T ss_pred             CC----EEeCcCCCCc------ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC---CCcccCeEECCCCC
Confidence            88    7666533211      222222  565 44443222  4788889887765444321   11111222 22444


Q ss_pred             -EEEEeCC--CCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCc---eEEEEEecCC
Q 044903          298 -LYGIDEN--SCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGG---GIVVVDVKAA  358 (387)
Q Consensus       298 -ly~~g~~--~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~---~i~v~d~~~~  358 (387)
                       |++....  ...|++||.++.+...+....  ........-+|+.+++++...   .++++|+...
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             EEEEEECcCCceEEEEEECCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence             4444433  247999999998876654322  112223344677666655432   7899998744

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.20  E-value=0.041  Score=51.30  Aligned_cols=170  Identities=14%  Similarity=0.037  Sum_probs=98.0

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCC--CCCC
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGE--LKDG  239 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~--~~~~  239 (387)
                      ..+..+++.......+.+-.  ....+.+.  .++.||++--.        ...+..+++....    .+.+..  +..+
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~--~~~~gl~~d~~~~~ly~~D~~--------~~~I~r~~~~g~~----~~~~~~~~~~~p  161 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNL--ENAIALDFHHRRELVFWSDVT--------LDRILRANLNGSN----VEEVVSTGLESP  161 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSC--SCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCC----EEEEECSSCSCC
T ss_pred             ccceeeccCCCcEEEEecCC--CccEEEEEecCCCeEEEEeCC--------CCcEEEEecCCCC----cEEEEeCCCCCc
Confidence            45677888776665543211  11122222  36789988432        2378888988776    555432  2111


Q ss_pred             cccccceeEEE-ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEEe--CCeEEEEeCCC-CeEEEEeCC
Q 044903          240 RFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD--EEVLYGIDENS-CTLSKYDEV  314 (387)
Q Consensus       240 ~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~--~g~ly~~g~~~-~~v~~yd~~  314 (387)
                          . ..++- .++.||+.......|.+++++...-+.+..   .+...+ .+++.  ++.||+.+... +.|++++++
T Consensus       162 ----~-glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~---~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          162 ----G-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             ----C-CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             ----c-EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec---CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence                1 12222 378999987666788999887544332221   111122 33443  68999998655 789999998


Q ss_pred             CCceEEccccccccCceeEEE--eCCeEEEEecCCceEEEEEec
Q 044903          315 MDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       315 ~~~W~~v~~~~~~~~~~~~~~--~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ...-+.+... ....+.+++.  .+++||+.-.....|.++|..
T Consensus       234 G~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          234 GSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             SCSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             CCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            6544433221 1222334444  477888886666777777766

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.20  E-value=0.12  Score=46.71  Aligned_cols=183  Identities=11%  Similarity=-0.032  Sum_probs=108.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCc---eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRT---WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~---W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      ++.||+..-.       ...++++++....   +.....+..+. ..+....+++||+.-..        ...++++|+.
T Consensus        46 ~~~lyw~D~~-------~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~--------~~~I~~~~~d  109 (318)
T 3sov_A           46 HGLIYWSDVS-------EEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSE--------TNRIEVSNLD  109 (318)
T ss_dssp             GTEEEEEETT-------TTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred             CCEEEEEECC-------CCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECC--------CCEEEEEECC
Confidence            5789887532       2567888887652   21111222222 12222247899998543        2378889887


Q ss_pred             CCccccCeEEc--CCCCCCcccccceeEEE--ECCEEEEEe-eeCCeEEEEECCCCceeec-cccccCCCCCcEEEEe--
Q 044903          223 NGEKNSRWEKT--GELKDGRFSREAIDAVG--WKGKLCLVN-VKGAEGAVYDVVANTWDDM-REGMVRGWRGPVAAMD--  294 (387)
Q Consensus       223 t~~~~~~W~~~--~~~~~~~~~~~~~~~v~--~~g~lyv~g-g~~~~i~~yD~~~~~W~~~-~~~~~~~~~~~~~~~~--  294 (387)
                      ...    =+.+  ..+..|      ...++  .+|.||+.. +....|+.++++...=+.+ ...+..   ...+++.  
T Consensus       110 G~~----~~~l~~~~~~~P------~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~---Pnglavd~~  176 (318)
T 3sov_A          110 GSL----RKVLFWQELDQP------RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW---PNGLTLDYE  176 (318)
T ss_dssp             SCS----CEEEECSSCSSE------EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC---EEEEEEETT
T ss_pred             CCc----EEEEEeCCCCCc------cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCC---ccEEEEecc
Confidence            654    2332  222211      12222  358999886 3347899999864322222 221111   1234443  


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++||+.+...+.|+++|.+...=+.+.. .....+.+++..++.+|+.-..+..|..+|..++
T Consensus       177 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          177 EQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEECCCCEEEEEcCCCCceEEEec-CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence            78999999878899999997644333332 1234467788889999999777889999998644

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.20  E-value=0.058  Score=49.81  Aligned_cols=135  Identities=13%  Similarity=0.128  Sum_probs=77.9

Q ss_pred             eEEEEeCCCCccccCeEEcC--CCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCC
Q 044903          215 SVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWR  287 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~--~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~  287 (387)
                      .+.+||..+++    -...-  ..+...  ......+.+   ++.+++.|+.+..+.+||+...  .-..+..  ..+ .
T Consensus       181 ~i~~wd~~~~~----~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~--h~~-~  251 (380)
T 3iz6_a          181 TCVLWDVTTGQ----RISIFGSEFPSGH--TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG--HEG-D  251 (380)
T ss_dssp             CEEEECTTTCC----EEEEECCCSSSSC--CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC--CSS-C
T ss_pred             cEEEEEcCCCc----EEEEeecccCCCC--ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC--cCC-C
Confidence            67889988876    33221  111111  011222333   5677788887789999998632  1222211  011 1


Q ss_pred             CcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccc-----c--CceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          288 GPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLL-----K--GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       288 ~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~-----~--~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      -.+++. .++..++.++.++.+.+||..+..-..+......     .  -...+...+|++++.|+.++.+.+||....
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence            123333 3567788888899999999987654332211111     0  122344557888889888899999998643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.19  E-value=0.078  Score=47.20  Aligned_cols=185  Identities=9%  Similarity=0.042  Sum_probs=97.7

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceee-CCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++..++.|+.+       ..+.+||..+.+-.. +..-.  ..-.+.+. -++++++.|+.+.        .+.+||..
T Consensus        65 ~~~~~l~s~s~d-------~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~--------~v~lWd~~  127 (304)
T 2ynn_A           65 ARKNWIIVGSDD-------FRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDL--------TVKLWNWE  127 (304)
T ss_dssp             GGGTEEEEEETT-------SEEEEEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETTS--------CEEEEEGG
T ss_pred             CCCCEEEEECCC-------CEEEEEECCCCcEEEEEeCCC--CcEEEEEEcCCCCEEEEECCCC--------eEEEEECC
Confidence            355566666532       467888988765322 11111  11111222 2456666666543        67888887


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCceee-ccccccCCCCCcEEEE---eC
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDD-MREGMVRGWRGPVAAM---DE  295 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~~---~~  295 (387)
                      ++     +.....+...   .....++.+   ++.+++.|+.+..+.+||..+..=.. +......+  ...+..   .+
T Consensus       128 ~~-----~~~~~~~~~h---~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~  197 (304)
T 2ynn_A          128 NN-----WALEQTFEGH---EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG--VNYVDYYPLPD  197 (304)
T ss_dssp             GT-----TEEEEEECCC---CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTC--EEEEEECCSTT
T ss_pred             CC-----cchhhhhccc---CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCc--EEEEEEEEcCC
Confidence            65     2222111100   011223333   45677777777889999986542111 11000000  111222   14


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceEEccccccccCce--eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          296 EVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.+.+.++.++.|.+||..+.+  .+..........  .+...++.+++.|+.++.+.+||..+.
T Consensus       198 ~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          198 KPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CCEEEEEcCCCeEEEEeCCCCc--cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            5667777788999999998763  233333233322  233346778888888899999998754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.18  E-value=0.014  Score=52.65  Aligned_cols=190  Identities=11%  Similarity=0.043  Sum_probs=103.3

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      -++.+|+.+..       ...+++||+.+++.+.+...........+..-++++|+......    .....+.+||+.+.
T Consensus        54 ~~g~l~~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~----~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           54 RQGQLFLLDVF-------EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF----KSTGGIFAATENGD  122 (333)
T ss_dssp             TTSCEEEEETT-------TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS----SSCCEEEEECTTSC
T ss_pred             CCCCEEEEECC-------CCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCC----CCCceEEEEeCCCC
Confidence            36678887652       14689999999887764321111111222223678888764321    11247889999888


Q ss_pred             ccccCeEE-cCCCCCCcccccceeEEEE--CCEEEEEeee------CCeEEEEECCCCceeeccccccCCCCCcEEEE-e
Q 044903          225 EKNSRWEK-TGELKDGRFSREAIDAVGW--KGKLCLVNVK------GAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-D  294 (387)
Q Consensus       225 ~~~~~W~~-~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~------~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~  294 (387)
                      .    -.. +.......    ....+.+  +|++|+....      ...++.||+++++...+......   ...++. .
T Consensus       123 ~----~~~~~~~~~~~~----~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~i~~~~  191 (333)
T 2dg1_A          123 N----LQDIIEDLSTAY----CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV---ANGIALST  191 (333)
T ss_dssp             S----CEEEECSSSSCC----CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS---EEEEEECT
T ss_pred             E----EEEEEccCccCC----cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc---ccceEECC
Confidence            7    542 22111111    1222222  6788886542      14688889887666554321111   112332 2


Q ss_pred             CC-eEEEEeCCCCeEEEEeCCC--CceEEcc-----ccccccCceeEE-EeCCeEEEEecCCceEEEEEec
Q 044903          295 EE-VLYGIDENSCTLSKYDEVM--DDWKEVV-----KSDLLKGARHAA-AGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 ~g-~ly~~g~~~~~v~~yd~~~--~~W~~v~-----~~~~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ++ .||+.+...+.|++||.++  .....+.     ..+.......++ .-+|+||+....++.+.+||+.
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            34 5888876567899999854  3333221     111111122233 3467888886666788888875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.18  E-value=0.081  Score=49.10  Aligned_cols=184  Identities=7%  Similarity=-0.027  Sum_probs=97.6

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+-...-.  .......+...++.+++.|+.+.        .+.+||..+..
T Consensus       145 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~  207 (401)
T 4aez_A          145 DGSFLSVGLGN-------GLVDIYDVESQTKLRTMA--GHQARVGCLSWNRHVLSSGSRSG--------AIHHHDVRIAN  207 (401)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTCCEEEEEC--CCSSCEEEEEEETTEEEEEETTS--------EEEEEETTSSS
T ss_pred             CCCEEEEECCC-------CeEEEEECcCCeEEEEec--CCCCceEEEEECCCEEEEEcCCC--------CEEEEecccCc
Confidence            55666666532       367889988776443211  11112223333566777776543        67888887433


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe--CCeEEEE
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGI  301 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~  301 (387)
                      ..  -..+.....      ....+.+  ++.+++.|+.+..+.+||..+..-...-....  ..-.+++..  ++.+++.
T Consensus       208 ~~--~~~~~~~~~------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~  277 (401)
T 4aez_A          208 HQ--IGTLQGHSS------EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLAT  277 (401)
T ss_dssp             CE--EEEEECCSS------CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEE
T ss_pred             ce--eeEEcCCCC------CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEE
Confidence            00  111111111      1222333  66777777777899999998753321111011  112234433  4467777


Q ss_pred             eC--CCCeEEEEeCCCCceEEccccccccCceeE-EEeCCeEEEE--ecCCceEEEEEecCC
Q 044903          302 DE--NSCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAV--CENGGGIVVVDVKAA  358 (387)
Q Consensus       302 g~--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~l~v~--gg~~~~i~v~d~~~~  358 (387)
                      ++  .++.|.+||..+.+-.....  .......+ ...+++.+++  |..++.+.+||..+.
T Consensus       278 ~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          278 GGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             ECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence            64  68899999998764433221  11111222 2235555555  335788999998853

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.17  E-value=0.022  Score=50.89  Aligned_cols=187  Identities=7%  Similarity=-0.056  Sum_probs=94.2

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+-...-.............-+++.++.|+.+.        .+.+||..+++
T Consensus        24 ~~~~l~s~~~d-------g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~--------~i~vwd~~~~~   88 (304)
T 2ynn_A           24 TEPWVLTTLYS-------GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF--------RIRVFNYNTGE   88 (304)
T ss_dssp             SSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS--------EEEEEETTTCC
T ss_pred             CCCEEEEEcCC-------CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCC--------EEEEEECCCCc
Confidence            45566666532       3577888877653321111111111122223456666666543        78889988876


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe--CCeEEEE
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGI  301 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~  301 (387)
                      .   -..+..-.      ....++.+  ++.+.+.|+.+..+.++|..++. ............-.+++..  ++.+++.
T Consensus        89 ~---~~~~~~h~------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           89 K---VVDFEAHP------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             E---EEEEECCS------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred             E---EEEEeCCC------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEE
Confidence            1   11111111      11222222  45666667777889999986541 1111100001011233332  4567778


Q ss_pred             eCCCCeEEEEeCCCCceEEccccccccCceeEEEe----CCeEEEEecCCceEEEEEecCC
Q 044903          302 DENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG----GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       302 g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~----~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.++.|.+||..+..=...... ........+.+    ++.+++.|+.++.|.+||+.+.
T Consensus       159 gs~D~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          159 GCLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             EETTSEEEEEETTCSSCSEEEEC-CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred             EeCCCeEEEEECCCCCccceecc-CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence            88899999999865421111010 11111112221    5567777777888888888754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.16  E-value=0.081  Score=47.81  Aligned_cols=184  Identities=13%  Similarity=0.035  Sum_probs=94.9

Q ss_pred             CccEEEeCCCCceeeCCC-CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC-----
Q 044903          164 TRPLIFDPICRTWTFGPE-LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK-----  237 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~-~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~-----  237 (387)
                      ..++++|+.+.+...... -........+..-++++||.....        ..+.+||+......  -..+....     
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~--------~~v~~~~~~g~~~~--~~~~~~~~~~g~~  138 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVAL--------HQVFKLDPHSKEGP--LLILGRSMQPGSD  138 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTT--------TEEEEECTTCSSCC--SEEESBTTBCCCS
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCC--------CEEEEEeCCCCeEE--EEEecccCCCCCC
Confidence            368999998877654211 111111222222367899886542        36888988665100  22222110     


Q ss_pred             CCcccccceeEEEE--CCEEEEEee-eCCeEEEEECCCCceeeccc-cc-----cCCCCCc-EEEEe--CCeEEEEeCCC
Q 044903          238 DGRFSREAIDAVGW--KGKLCLVNV-KGAEGAVYDVVANTWDDMRE-GM-----VRGWRGP-VAAMD--EEVLYGIDENS  305 (387)
Q Consensus       238 ~~~~~~~~~~~v~~--~g~lyv~gg-~~~~i~~yD~~~~~W~~~~~-~~-----~~~~~~~-~~~~~--~g~ly~~g~~~  305 (387)
                      ..... .....++-  +|.+|+... ....+.+||+....-..+.. +.     +.....+ .+++.  ++.||+.+...
T Consensus       139 ~~~~~-~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          139 QNHFC-QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             TTCCS-SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             ccccC-CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence            00010 11223332  688999986 45789999965443333321 00     0111122 33333  38999999888


Q ss_pred             CeEEEEeCCCCceEEccccc-cccCceeEEEeCCeEEEEec-------CCceEEEEEecCC
Q 044903          306 CTLSKYDEVMDDWKEVVKSD-LLKGARHAAAGGGRVCAVCE-------NGGGIVVVDVKAA  358 (387)
Q Consensus       306 ~~v~~yd~~~~~W~~v~~~~-~~~~~~~~~~~~~~l~v~gg-------~~~~i~v~d~~~~  358 (387)
                      +.|.+||+++.+.......+ .......++...+.+++..|       .+..+.++|..++
T Consensus       218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g  278 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG  278 (329)
T ss_dssp             TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred             CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence            89999999866554432222 11222223323344444443       2357888886643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.12  E-value=0.19  Score=50.58  Aligned_cols=203  Identities=17%  Similarity=0.178  Sum_probs=116.5

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCC--------ceeeeEEeeCCEEEEEecCCCCCCCC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RRWCAAGYSRGAVYVASGIGSQFSSD  211 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~  211 (387)
                      .++.++.||+....        ..++.+|..|.  .|+.-...+..        ....+.++.+++||+...        
T Consensus        73 P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--------  136 (677)
T 1kb0_A           73 PVVVDGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------  136 (677)
T ss_dssp             CEEETTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--------
T ss_pred             CEEECCEEEEECCC--------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC--------
Confidence            34568899987652        46788999877  48875433210        112234567888888632        


Q ss_pred             CCceEEEEeCCCCccccCeEEcCC-CCCCcccccceeEEEECCEEEEEeee-----CCeEEEEECCCC--ceeecccccc
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTGE-LKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDDMREGMV  283 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~~-~~~~~~~~~~~~~v~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~~~~~~~  283 (387)
                       ...+..+|..|++..  |+.-.. -..... ......++.++++|+....     ...+.+||.+++  .|+.-.....
T Consensus       137 -dg~l~alD~~tG~~~--W~~~~~~~~~~~~-~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~  212 (677)
T 1kb0_A          137 -DGRLIALDAATGKEV--WHQNTFEGQKGSL-TITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGD  212 (677)
T ss_dssp             -TSEEEEEETTTCCEE--EEEETTTTCCSSC-BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred             -CCEEEEEECCCCCEE--eeecCCcCcCcCc-ccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCC
Confidence             136889999998866  886542 111001 1113345679999886542     357999999876  5875321111


Q ss_pred             C------------------------------CCCCcEEEEeCCeEEEEeCCC------------------CeEEEEeCCC
Q 044903          284 R------------------------------GWRGPVAAMDEEVLYGIDENS------------------CTLSKYDEVM  315 (387)
Q Consensus       284 ~------------------------------~~~~~~~~~~~g~ly~~g~~~------------------~~v~~yd~~~  315 (387)
                      .                              .|...+.-..++.||+-.++.                  +.|+.+|+++
T Consensus       213 ~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T  292 (677)
T 1kb0_A          213 PSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT  292 (677)
T ss_dssp             TTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred             ccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC
Confidence            0                              011111112356777664321                  2599999986


Q ss_pred             C--ceEEcccccc-----ccCceeEE--EeCC---eEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          316 D--DWKEVVKSDL-----LKGARHAA--AGGG---RVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       316 ~--~W~~v~~~~~-----~~~~~~~~--~~~~---~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      .  .|+.-.....     ......++  ..+|   ++++++..++.++++|..++  .-.|++
T Consensus       293 G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG--~~l~~~  353 (677)
T 1kb0_A          293 GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG--KFISAK  353 (677)
T ss_dssp             CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC--CEEEEE
T ss_pred             CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC--CEeccc
Confidence            5  5765321110     01112222  2366   67777777889999998854  246776

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.0096  Score=54.35  Aligned_cols=149  Identities=8%  Similarity=0.056  Sum_probs=86.0

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEEC----CEEEEEeeeCCeEEEEEC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWK----GKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~----g~lyv~gg~~~~i~~yD~  270 (387)
                      +++.++.|+.+.        .+.+||....+    +..+..+....   ....++.+.    +.+.+.++.+..+.+||.
T Consensus        22 ~~~~l~~~~~dg--------~i~iw~~~~~~----~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSSDK--------TIKIFEVEGET----HKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDGKVLIWKE   86 (379)
T ss_dssp             SSSEEEEEETTS--------CEEEEEEETTE----EEEEEEECCCS---SCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEECCC--------cEEEEecCCCc----ceeeeEecCCC---CcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence            355556665433        57888887666    65544332111   113333332    666677777778999999


Q ss_pred             CCCceeeccccccCCCCCcEEEEe-C--CeEEEEeCCCCeEEEEeCCCCceEEccccccccCc-eeEEEe----------
Q 044903          271 VANTWDDMREGMVRGWRGPVAAMD-E--EVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA-RHAAAG----------  336 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~~~~~~~~-~--g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~-~~~~~~----------  336 (387)
                      .+++|..+.........-.+++.. +  +.+++.++.++.|.+||..+..-............ .++...          
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence            998876654321111111233332 2  56777777889999999987633222111112222 222222          


Q ss_pred             ----CCeEEEEecCCceEEEEEecCC
Q 044903          337 ----GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       337 ----~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                          ++..++.|+.++.+.+||....
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~~~~  192 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKYNSD  192 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEEETT
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEecCC
Confidence                4788888888889999998743

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.10  E-value=0.02  Score=51.58  Aligned_cols=185  Identities=9%  Similarity=-0.060  Sum_probs=97.8

Q ss_pred             eCCE-EEEEcCccCCCCCCCCccEEEeC-CCCceeeCCC--CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEe
Q 044903          145 LSGK-LILLAATTHNFNPALTRPLIFDP-ICRTWTFGPE--LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       145 ~~~~-l~v~GG~~~~~~~~~~~~~vydp-~t~~W~~l~~--~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd  220 (387)
                      .++. .++.|+.+       ..+.+||. .+.+-..+..  .......  .+...+.+++.|+.+.        .+.+||
T Consensus        66 ~~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~l~s~~~d~--------~i~iwd  128 (342)
T 1yfq_A           66 DNTDLQIYVGTVQ-------GEILKVDLIGSPSFQALTNNEANLGICR--ICKYGDDKLIAASWDG--------LIEVID  128 (342)
T ss_dssp             ESSSEEEEEEETT-------SCEEEECSSSSSSEEECBSCCCCSCEEE--EEEETTTEEEEEETTS--------EEEEEC
T ss_pred             CCCCcEEEEEcCC-------CeEEEEEeccCCceEeccccCCCCceEE--EEeCCCCEEEEEcCCC--------eEEEEc
Confidence            3566 66666632       46889999 8887766654  2222222  2222255556665533        677887


Q ss_pred             CCC---------CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCC-Cc--eeeccccccCCCCC
Q 044903          221 LMN---------GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVA-NT--WDDMREGMVRGWRG  288 (387)
Q Consensus       221 ~~t---------~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~-~~--W~~~~~~~~~~~~~  288 (387)
                      ..+         .+    -  +..+...   ..........+. ++.+.....+.+||..+ ..  .........  ..-
T Consensus       129 ~~~~~~~~~~~~~~----~--~~~~~~~---~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~i  196 (342)
T 1yfq_A          129 PRNYGDGVIAVKNL----N--SNNTKVK---NKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLK--YQI  196 (342)
T ss_dssp             HHHHTTBCEEEEES----C--SSSSSSC---CCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCS--SCE
T ss_pred             ccccccccccccCC----e--eeEEeeC---CceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCC--Cce
Confidence            765         33    1  1111111   011223333444 55555567899999987 33  222221111  112


Q ss_pred             cEEEEe--CCeEEEEeCCCCeEEEEeCCCC--c--eEEccccccc---------cCceeEE--EeCCeEEEEecCCceEE
Q 044903          289 PVAAMD--EEVLYGIDENSCTLSKYDEVMD--D--WKEVVKSDLL---------KGARHAA--AGGGRVCAVCENGGGIV  351 (387)
Q Consensus       289 ~~~~~~--~g~ly~~g~~~~~v~~yd~~~~--~--W~~v~~~~~~---------~~~~~~~--~~~~~l~v~gg~~~~i~  351 (387)
                      .+++..  ++.+++.++.++.+.+||.+..  .  .+.+......         ......+  ..++++++.|+.++.+.
T Consensus       197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence            233333  4677788878899999887654  1  1111111111         1122222  23677788877888999


Q ss_pred             EEEecCC
Q 044903          352 VVDVKAA  358 (387)
Q Consensus       352 v~d~~~~  358 (387)
                      +||+.+.
T Consensus       277 vwd~~~~  283 (342)
T 1yfq_A          277 CWNLQTR  283 (342)
T ss_dssp             EEETTTT
T ss_pred             EEcCccH
Confidence            9999854

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.10  E-value=0.037  Score=50.69  Aligned_cols=172  Identities=13%  Similarity=0.091  Sum_probs=91.9

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceee-eEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWC-AAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+.+||..+.+-...-.-....... ..... ++.+++.|+.+.        .+.+||..+.+    ....-.....  
T Consensus       176 ~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg--------~v~~wd~~~~~----~~~~~~~h~~--  241 (354)
T 2pbi_B          176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK--------KAMVWDMRSGQ----CVQAFETHES--  241 (354)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS--------CEEEEETTTCC----EEEEECCCSS--
T ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC--------eEEEEECCCCc----EEEEecCCCC--
Confidence            45778888877543211001111111 11111 346777777644        68899998877    4332211111  


Q ss_pred             cccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCce
Q 044903          242 SREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDW  318 (387)
Q Consensus       242 ~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W  318 (387)
                         ...++.+  ++.+++.++.+..+.+||+.++.-...-..........+++ ..++++.+.++.++.|.+||..+.. 
T Consensus       242 ---~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-  317 (354)
T 2pbi_B          242 ---DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-  317 (354)
T ss_dssp             ---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-
T ss_pred             ---CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-
Confidence               1223333  56677777777889999998764322111000000111222 2356777777788999999986653 


Q ss_pred             EEccccccccCcee--EEEeCCeEEEEecCCceEEEEE
Q 044903          319 KEVVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       319 ~~v~~~~~~~~~~~--~~~~~~~l~v~gg~~~~i~v~d  354 (387)
                       .+.....+.....  ....+|+.++.|+.++.+.+||
T Consensus       318 -~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          318 -RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             -EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             -eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence             2223322333322  2334778888877788887774

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.08  E-value=0.0095  Score=53.68  Aligned_cols=190  Identities=14%  Similarity=0.205  Sum_probs=101.2

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCce-eeeEEee---CCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGYS---RGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~vyd~  221 (387)
                      ++..++.|+.+       ..+.+||..+++...+..+..... -.+.+..   ++++++.|+.+.        .+.+||.
T Consensus        24 ~g~~lasgs~D-------~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~--------~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSD-------RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR--------KVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETT-------TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS--------CEEEECC
T ss_pred             CCCEEEEEeCC-------CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC--------EEEEEEC
Confidence            45666666532       356778877664332222211111 1112221   256666766544        6888999


Q ss_pred             CCCccccCeEEcCCCCCCcccccceeEEEE--C--CEEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEEe--
Q 044903          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMD--  294 (387)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~--g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~--  294 (387)
                      .+.+    |..+..+....   ....++.+  +  |.+.+.|+.+..+.++|..+. .|..............+++..  
T Consensus        89 ~~~~----~~~~~~~~~h~---~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           89 ENGT----WEKSHEHAGHD---SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             SSSC----CCEEEEECCCS---SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             CCCc----ceEEEEccCCC---CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            8877    75543222111   01222333  2  556666666678899998765 575332100000000011100  


Q ss_pred             ----------------CCeEEEEeCCCCeEEEEeCCC-CceEEccccccccCceeEEEe--C----CeEEEEecCCceEE
Q 044903          295 ----------------EEVLYGIDENSCTLSKYDEVM-DDWKEVVKSDLLKGARHAAAG--G----GRVCAVCENGGGIV  351 (387)
Q Consensus       295 ----------------~g~ly~~g~~~~~v~~yd~~~-~~W~~v~~~~~~~~~~~~~~~--~----~~l~v~gg~~~~i~  351 (387)
                                      .+++++.++.++.|.+||.++ ..|..+..+..+......+.+  +    +++++.++.++.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                            134666777788999999864 467776655444443333332  2    26777777888899


Q ss_pred             EEEecC
Q 044903          352 VVDVKA  357 (387)
Q Consensus       352 v~d~~~  357 (387)
                      +||+..
T Consensus       242 iw~~~~  247 (316)
T 3bg1_A          242 IWTCDD  247 (316)
T ss_dssp             EEECSS
T ss_pred             EEEccC
Confidence            998874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.011  Score=54.81  Aligned_cols=174  Identities=9%  Similarity=-0.063  Sum_probs=88.8

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..+.+||..+.+-...-..........+..-+++.++.|+.+.        .+.+||..+.+..   ..+......    
T Consensus       227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~~~---~~~~~~~~~----  291 (425)
T 1r5m_A          227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG--------TLRIWHGGNGNSQ---NCFYGHSQS----  291 (425)
T ss_dssp             GCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEEECSSSBSCS---EEECCCSSC----
T ss_pred             CeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC--------EEEEEECCCCccc---eEecCCCcc----
Confidence            4678899887643221111111111111222455666666433        5788888776511   111111111    


Q ss_pred             cceeEEEE-CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCc----
Q 044903          244 EAIDAVGW-KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDD----  317 (387)
Q Consensus       244 ~~~~~v~~-~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~----  317 (387)
                       ....+.. ++ +++.++....+.+||..+.+-...-.. . ...-.+++. .++++++.++.++.|.+||..+..    
T Consensus       292 -i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~  367 (425)
T 1r5m_A          292 -IVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-D-GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR  367 (425)
T ss_dssp             -EEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-T-TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred             -EEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-C-CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence             1222222 55 556666668899999977643222110 0 111112222 246677777778999999987654    


Q ss_pred             ---------e-----EEccccccccC--cee-E-EEeCCeEEEEecCCceEEEEEec
Q 044903          318 ---------W-----KEVVKSDLLKG--ARH-A-AAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       318 ---------W-----~~v~~~~~~~~--~~~-~-~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                               |     ..+........  ... + ...+++.+++++.++.+.+||+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                     1     12222222211  222 2 23367777787888889999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.08  E-value=0.031  Score=57.02  Aligned_cols=187  Identities=9%  Similarity=-0.023  Sum_probs=98.7

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+....-...........-.-+++.++.|+.+.        .+.+||..+++
T Consensus        24 ~~~~la~~~~~-------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~vw~~~~~~   88 (814)
T 3mkq_A           24 TEPWVLTTLYS-------GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF--------RIRVFNYNTGE   88 (814)
T ss_dssp             SSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS--------EEEEEETTTCC
T ss_pred             CCCEEEEEeCC-------CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCc
Confidence            45555555521       4678888877654332111111111111222455666665533        78999998877


Q ss_pred             cccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEEe--CCeEEE
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMD--EEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~--~g~ly~  300 (387)
                          ....-.-...     ....+.  -++...+.++....+.+||..++ .....-.  .....-.+++..  ++.+++
T Consensus        89 ----~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           89 ----KVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             ----EEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE--CCSSCEEEEEEETTEEEEEE
T ss_pred             ----EEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc--CCCCcEEEEEEEcCCCCEEE
Confidence                4332211111     122222  25655566666678999998765 2222111  111111233333  456777


Q ss_pred             EeCCCCeEEEEeCCCCceEEccccccccC-ceeEEEe--CCeEEEEecCCceEEEEEecCC
Q 044903          301 IDENSCTLSKYDEVMDDWKEVVKSDLLKG-ARHAAAG--GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~~W~~v~~~~~~~~-~~~~~~~--~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .++.++.|.+||..+..-........... .......  ++..+++|+.++.+.+||..+.
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            77788999999987653322211111111 1222223  7788888888889999998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.08  E-value=0.013  Score=53.95  Aligned_cols=176  Identities=11%  Similarity=0.054  Sum_probs=86.9

Q ss_pred             CccEEEeCCCCceeeCCCCCC-C--ceeeeEE-eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          164 TRPLIFDPICRTWTFGPELVT-P--RRWCAAG-YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~-~--r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      ..+.+||..+++-........ .  ..-.+.+ .-+++.++.|+.+.        .+.+||..+.+    -...-.....
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg--------~v~iwd~~~~~----~~~~~~~h~~  182 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF--------SVKVWDLSQKA----VLKSYNAHSS  182 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS--------CEEEEETTTTE----EEEEECCCSS
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC--------eEEEEECCCCc----EEEEEcCCCC
Confidence            357788887765333222110 1  1111122 22566777776544        67889988876    3222111111


Q ss_pred             cccccceeEEEE--CC-EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCC
Q 044903          240 RFSREAIDAVGW--KG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEV  314 (387)
Q Consensus       240 ~~~~~~~~~v~~--~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~  314 (387)
                           ...++.+  ++ .+++.++....+.+||+.+.+-..............+++..  ++.+++.+..++.|.+||..
T Consensus       183 -----~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          183 -----EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             -----CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred             -----CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence                 1222222  33 35666666678999998876533221111111111123322  45678888788999999987


Q ss_pred             CCceEEccccccccCceeEEE--eC-CeEEEEecCCceEEEEEecCC
Q 044903          315 MDDWKEVVKSDLLKGARHAAA--GG-GRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       315 ~~~W~~v~~~~~~~~~~~~~~--~~-~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.+  .+............+.  .+ +++++.|+.++.|.+||...+
T Consensus       258 ~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          258 NPD--SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             CGG--GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             CCc--EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            653  2222222222222222  23 466777777888999998854

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.08  E-value=0.02  Score=52.29  Aligned_cols=230  Identities=16%  Similarity=0.095  Sum_probs=110.4

Q ss_pred             CCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCE-EEEEcCccCCCCCCCCcc--EEEeCCC
Q 044903           97 STPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGK-LILLAATTHNFNPALTRP--LIFDPIC  173 (387)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~--~vydp~t  173 (387)
                      +..+.++.+|+.+.+...+......        .+.       +-+..-+++ ||+......    ....+  |.+|+.+
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~~~~--------~p~-------~l~~spdg~~l~~~~~~~~----~~~~v~~~~~~~~~   86 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDAEVA--------NPS-------YLIPSADGKFVYSVNEFSK----DQAAVSAFAFDKEK   86 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEEECS--------CCC-------SEEECTTSSEEEEEECCSS----TTCEEEEEEEETTT
T ss_pred             CCCEEEEEEeCCCCCEEEeecccCC--------CCc-------eEEECCCCCEEEEEEccCC----CCCcEEEEEEeCCC
Confidence            3456677788888877655433110        010       112223444 665543210    12344  5556766


Q ss_pred             CceeeCCCCCCC-ceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC-------CCCCC-c-ccc
Q 044903          174 RTWTFGPELVTP-RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG-------ELKDG-R-FSR  243 (387)
Q Consensus       174 ~~W~~l~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~-------~~~~~-~-~~~  243 (387)
                      .+.+.+...+.. ......+.-++.+|+.+..+        ..+.+||..++..   ...+.       .-+.+ + ...
T Consensus        87 g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~--------~~v~~~~~~~~g~---~~~~~~~~~~~g~~~~~~~~~~~  155 (361)
T 3scy_A           87 GTLHLLNTQKTMGADPCYLTTNGKNIVTANYSG--------GSITVFPIGQDGA---LLPASDVIEFKGSGPDKERQTMP  155 (361)
T ss_dssp             TEEEEEEEEECSSSCEEEEEECSSEEEEEETTT--------TEEEEEEBCTTSC---BCSCSEEEECCCCCSCTTTCSSC
T ss_pred             CcEEEeeEeccCCCCcEEEEECCCEEEEEECCC--------CEEEEEEeCCCCc---CcccceeEEccCCCCCccccCCC
Confidence            777766544321 11222223334566664322        2678888765430   11111       00100 0 000


Q ss_pred             cceeEEE-ECCE-EEEEeeeCCeEEEEECCCCce-------eec---c-ccccCCCCCcEEEE-eCC-eEEEEeCCCCeE
Q 044903          244 EAIDAVG-WKGK-LCLVNVKGAEGAVYDVVANTW-------DDM---R-EGMVRGWRGPVAAM-DEE-VLYGIDENSCTL  308 (387)
Q Consensus       244 ~~~~~v~-~~g~-lyv~gg~~~~i~~yD~~~~~W-------~~~---~-~~~~~~~~~~~~~~-~~g-~ly~~g~~~~~v  308 (387)
                      ..+..+. -+|+ +|+.+.....+.+|+...+.-       ...   . .....+.....++. .+| .+|+....++.|
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            1122222 2565 776654447788887765442       111   0 00111111112332 234 588887667899


Q ss_pred             EEEeCCCCceEEccccccc----cCceeE-EEeCCe-EEEEecC-CceEEEEEec
Q 044903          309 SKYDEVMDDWKEVVKSDLL----KGARHA-AAGGGR-VCAVCEN-GGGIVVVDVK  356 (387)
Q Consensus       309 ~~yd~~~~~W~~v~~~~~~----~~~~~~-~~~~~~-l~v~gg~-~~~i~v~d~~  356 (387)
                      .+||.++.+.+.+...+..    .....+ ..-+|+ ||+.+.. .+.+.+||+.
T Consensus       236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            9999988877665543221    112223 233565 6666555 5778898886

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.06  E-value=0.018  Score=53.05  Aligned_cols=145  Identities=8%  Similarity=0.094  Sum_probs=79.6

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE----CCEEEEEeeeCCeEEEEEC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW----KGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~----~g~lyv~gg~~~~i~~yD~  270 (387)
                      ++.+++.|+.+.        .+.+||..+.+    -...-..+...     ......    ++.+.+.++....+.+||.
T Consensus       111 ~~~~l~s~~~d~--------~i~iwd~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B          111 DTGMFTSSSFDK--------TLKVWDTNTLQ----TADVFNFEETV-----YSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             CTTCEEEEETTS--------EEEEEETTTTE----EEEEEECSSCE-----EEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             CCcEEEEEeCCC--------eEEEeeCCCCc----cceeccCCCce-----eeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            445666666543        68889988876    43333222211     111111    3446677777788999999


Q ss_pred             CCCceeeccccccCCCCCcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCc--eEEccc------------cccccCceeEE
Q 044903          271 VANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDENSCTLSKYDEVMDD--WKEVVK------------SDLLKGARHAA  334 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~~~~~~~~-~g-~ly~~g~~~~~v~~yd~~~~~--W~~v~~------------~~~~~~~~~~~  334 (387)
                      .+..-...-.....  .-.+++.. ++ .+++.++.++.+.+||..+..  ...+..            ..........+
T Consensus       174 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          174 KSGSCSHILQGHRQ--EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SSSCCCEEECCCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             CCcceeeeecCCCC--cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            76643211110010  11123322 23 377788888999999986542  222210            01112222222


Q ss_pred             --EeCCeEEEEecCCceEEEEEecCC
Q 044903          335 --AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       335 --~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                        ..+++.++.++.++.+.+||+.+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCC
Confidence              336778888888889999999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.079  Score=46.65  Aligned_cols=105  Identities=9%  Similarity=-0.077  Sum_probs=59.9

Q ss_pred             EEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEccccccc
Q 044903          249 VGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       249 v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~  327 (387)
                      ..-++. ++.++....+.+||..+.+-...-.  .....-.+++.. +++ ++.++.++.|.+||.++.+-......+..
T Consensus       192 ~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  267 (313)
T 3odt_A          192 VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--GHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAI  267 (313)
T ss_dssp             EEETTE-EEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSS
T ss_pred             EcCCCe-EEEccCCCeEEEEECCchhhhhhhh--cCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCc
Confidence            334677 5666666889999997654221111  011111233333 444 55666789999999988754443322211


Q ss_pred             cCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          328 KGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .-.......+++ ++.++.++.+.+||+.+.
T Consensus       268 ~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          268 SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             CEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             eEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            111222334666 556778899999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.04  E-value=0.031  Score=50.42  Aligned_cols=178  Identities=10%  Similarity=0.023  Sum_probs=93.4

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeC----CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSR----GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      ..+.+||..+++............-.+.+...    +.+++.|+.+.        .+.+||..+.+..  -..+......
T Consensus        44 ~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~--~~~~~~~~~~  113 (357)
T 3i2n_A           44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG--------NLHIWNLEAPEMP--VYSVKGHKEI  113 (357)
T ss_dssp             EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS--------CEEEECTTSCSSC--SEEECCCSSC
T ss_pred             cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC--------eEEEEeCCCCCcc--EEEEEecccc
Confidence            46788998887765432222111112222222    46666666543        5788887765400  2222211111


Q ss_pred             cccccceeEE-------EECCEEEEEeeeCCeEEEEECCCCc--eeeccccccC-CCCCcEEE-----EeCCeEEEEeCC
Q 044903          240 RFSREAIDAV-------GWKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVR-GWRGPVAA-----MDEEVLYGIDEN  304 (387)
Q Consensus       240 ~~~~~~~~~v-------~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~-~~~~~~~~-----~~~g~ly~~g~~  304 (387)
                      .     ....       .-++.+.+.++....+.+||+.+..  ...+...... .....+++     ..++.+++.++.
T Consensus       114 v-----~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~  188 (357)
T 3i2n_A          114 I-----NAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD  188 (357)
T ss_dssp             E-----EEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET
T ss_pred             e-----EEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc
Confidence            1     1111       1256666677766789999998764  3333211110 00111222     136677777778


Q ss_pred             CCeEEEEeCCCCceEEccccccccCceeEEEe----CCeEEEEecCCceEEEEEecCC
Q 044903          305 SCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG----GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       305 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~----~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.|.+||..+..-.....  ......++...    ++..+++|+.++.+.+||....
T Consensus       189 d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          189 NGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             TSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             CCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            8999999998875322211  11112223332    5777888777888999988743

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.04  E-value=0.21  Score=49.43  Aligned_cols=205  Identities=13%  Similarity=0.102  Sum_probs=116.5

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeC-CCC--ceeeCCCCCC-----Cce---eeeEEe--eCCE----EEEEecC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDP-ICR--TWTFGPELVT-----PRR---WCAAGY--SRGA----VYVASGI  204 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp-~t~--~W~~l~~~~~-----~r~---~~~~~~--~~~~----iyv~GG~  204 (387)
                      .++.++.||+....       ...++.+|. .|.  .|+.-.....     .++   ....++  .+++    ||+... 
T Consensus        58 P~v~~g~vyv~~~~-------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-  129 (599)
T 1w6s_A           58 PLVVDGKMYIHTSF-------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-  129 (599)
T ss_dssp             CEEETTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred             cEEECCEEEEEeCC-------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence            34568999997652       246888998 776  4887543321     111   122344  5666    887532 


Q ss_pred             CCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEee-----eCCeEEEEECCCC--ceee
Q 044903          205 GSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV-----KGAEGAVYDVVAN--TWDD  277 (387)
Q Consensus       205 ~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg-----~~~~i~~yD~~~~--~W~~  277 (387)
                              ...+..+|..|++..  |+.-..-...... ....-++.+|++|+-++     ....+.+||.++.  .|+.
T Consensus       130 --------dg~l~AlDa~TG~~~--W~~~~~~~~~~~~-~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~  198 (599)
T 1w6s_A          130 --------DGNVAALNAETGETV--WKVENSDIKVGST-LTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (599)
T ss_dssp             --------TSEEEEEETTTCCEE--EEEECCCGGGTCB-CCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             --------CCEEEEEECCCCCEE--EeecCCCCCccce-eecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence                    126789999999866  9854321110011 11334567999887543     1358999999876  5874


Q ss_pred             cccccc------------------------------------CCCCCcEEEEeCCeEEEEeCCC---------------C
Q 044903          278 MREGMV------------------------------------RGWRGPVAAMDEEVLYGIDENS---------------C  306 (387)
Q Consensus       278 ~~~~~~------------------------------------~~~~~~~~~~~~g~ly~~g~~~---------------~  306 (387)
                      -.....                                    ..|...+.....+.||+-.++.               +
T Consensus       199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~  278 (599)
T 1w6s_A          199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM  278 (599)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence            321110                                    0111223333467788765542               4


Q ss_pred             eEEEEeCCCC--ceEEcccccc-----ccCceeEEE---eCC---eEEEEecCCceEEEEEecCCCCCceeEEc
Q 044903          307 TLSKYDEVMD--DWKEVVKSDL-----LKGARHAAA---GGG---RVCAVCENGGGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       307 ~v~~yd~~~~--~W~~v~~~~~-----~~~~~~~~~---~~~---~l~v~gg~~~~i~v~d~~~~~~~~~W~~~  367 (387)
                      .|+.+|+++.  .|..-.....     ......++.   .+|   ++++.+..++.++++|..++  ..+|+..
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG--~~lw~~~  350 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG--ALVSANK  350 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC--CEEEEEE
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC--CEeeccc
Confidence            7999999875  4765322111     011222333   356   57777667889999998743  3567763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.04  E-value=0.0097  Score=54.10  Aligned_cols=182  Identities=13%  Similarity=0.042  Sum_probs=96.4

Q ss_pred             ccEEEeCCCCceeeCCCCCCC-ceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          165 RPLIFDPICRTWTFGPELVTP-RRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      .++.+|+.+++++.+...... .....+..-++++|+.+..+.      ...+.+||..+++    ++.+......... 
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~------~~~v~~~~~~~g~----~~~~~~~~~~~~~-   87 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDD------EGGIAAWQIDGQT----AHKLNTVVAPGTP-   87 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETT------EEEEEEEEEETTE----EEEEEEEEEESCC-
T ss_pred             EEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCC------CceEEEEEecCCc----EEEeeeeecCCCC-
Confidence            367778888887764322111 111122223677887764311      2368899988777    7665532111000 


Q ss_pred             cceeEEEECCE-EEEEeeeCCeEEEEECC-CCceeeccccccCC--------CCCc-EEE-EeCCeEEEEeCCCCeEEEE
Q 044903          244 EAIDAVGWKGK-LCLVNVKGAEGAVYDVV-ANTWDDMREGMVRG--------WRGP-VAA-MDEEVLYGIDENSCTLSKY  311 (387)
Q Consensus       244 ~~~~~v~~~g~-lyv~gg~~~~i~~yD~~-~~~W~~~~~~~~~~--------~~~~-~~~-~~~g~ly~~g~~~~~v~~y  311 (387)
                      -...+..-+|+ ||+.+.....+.+||.. ......+......+        ...+ .++ ..+|++|+.+...+.+.+|
T Consensus        88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~  167 (347)
T 3hfq_A           88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY  167 (347)
T ss_dssp             CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence            01223333554 66665444678899885 33443332110100        0011 233 2356788887767889999


Q ss_pred             eCC-CCceEEccccc--cccCc-eeEEEeCCe-EEEEecCCceEEEEEecC
Q 044903          312 DEV-MDDWKEVVKSD--LLKGA-RHAAAGGGR-VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       312 d~~-~~~W~~v~~~~--~~~~~-~~~~~~~~~-l~v~gg~~~~i~v~d~~~  357 (387)
                      |.+ +.+...+....  ..... ..++.-+|+ +|+.+..+..+.+||...
T Consensus       168 ~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          168 NVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             EECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            988 55555543221  11122 223344665 777766778888888773

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.03  E-value=0.29  Score=48.11  Aligned_cols=206  Identities=11%  Similarity=0.079  Sum_probs=116.2

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeC-CCC--ceeeCCCCCC-----Cc---eeeeEEeeCCEEEEEecCCCCCCC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDP-ICR--TWTFGPELVT-----PR---RWCAAGYSRGAVYVASGIGSQFSS  210 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp-~t~--~W~~l~~~~~-----~r---~~~~~~~~~~~iyv~GG~~~~~~~  210 (387)
                      .++.++.||+....       ...++.+|. .|.  .|+.-.....     .+   ...+.++.+++||+...       
T Consensus        58 P~v~~g~vyv~~~~-------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  123 (571)
T 2ad6_A           58 PLVIGDMMYVHSAF-------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------  123 (571)
T ss_dssp             CEEETTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             cEEECCEEEEEeCC-------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------
Confidence            34568999987652       246889998 776  4887443221     01   11234567889988642       


Q ss_pred             CCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeee-----CCeEEEEECCCC--ceeecccccc
Q 044903          211 DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDDMREGMV  283 (387)
Q Consensus       211 ~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~~~~~~~  283 (387)
                        ...+..+|..+++..  |+.-..-+..... .....++.++++|+-...     ...+.+||.++.  .|+.-.....
T Consensus       124 --dg~l~alD~~tG~~~--W~~~~~~~~~~~~-~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~  198 (571)
T 2ad6_A          124 --NGHLLALDAKTGKIN--WEVEVCDPKVGST-LTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSD  198 (571)
T ss_dssp             --TSEEEEEETTTCCEE--EEEECCCGGGTCB-CCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred             --CCEEEEEECCCCCEE--EEecCCCCCccce-eccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCc
Confidence              126889999998865  9854321100001 112345679999886542     358999999876  6864321110


Q ss_pred             -----------------------CC-------------CCCcEEEEeCCeEEEEeCC---------------CCeEEEEe
Q 044903          284 -----------------------RG-------------WRGPVAAMDEEVLYGIDEN---------------SCTLSKYD  312 (387)
Q Consensus       284 -----------------------~~-------------~~~~~~~~~~g~ly~~g~~---------------~~~v~~yd  312 (387)
                                             ..             |...+.-...+.+|+-.++               .+.|+.+|
T Consensus       199 ~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald  278 (571)
T 2ad6_A          199 DSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRD  278 (571)
T ss_dssp             HHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEE
T ss_pred             cccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEe
Confidence                                   00             0111111224678876542               13599999


Q ss_pred             CCCC--ceEEccccc---c--ccCceeEEE--eCC---eEEEEecCCceEEEEEecCCCCCceeEEcC
Q 044903          313 EVMD--DWKEVVKSD---L--LKGARHAAA--GGG---RVCAVCENGGGIVVVDVKAAAAPTIFVVDT  368 (387)
Q Consensus       313 ~~~~--~W~~v~~~~---~--~~~~~~~~~--~~~---~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~  368 (387)
                      +++.  .|+.-....   .  ......++.  .+|   ++++++..++.++++|..++  ...|+...
T Consensus       279 ~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG--~~~w~~~~  344 (571)
T 2ad6_A          279 LDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG--NLIVAEKV  344 (571)
T ss_dssp             TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC--CEEEEEES
T ss_pred             cCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCC--CEEeeecc
Confidence            9765  576532211   0  111222232  367   46777667788999998743  34687643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.02  E-value=0.026  Score=51.79  Aligned_cols=190  Identities=10%  Similarity=0.078  Sum_probs=95.5

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+....-..+.......+..-++..++.||.+.        .+.+|+...+.
T Consensus        75 d~~~l~s~s~D-------g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~--------~i~v~~~~~~~  139 (354)
T 2pbi_B           75 DKRRIVSSSQD-------GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN--------KCSVYPLTFDK  139 (354)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS--------EEEEEECCCCT
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC--------CEEEEEEeccc
Confidence            34455555532       3567778766654432222211111222223566777777654        56777765432


Q ss_pred             cccCeEEcCCCCCCc-ccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe---CCeEE
Q 044903          226 KNSRWEKTGELKDGR-FSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---EEVLY  299 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~-~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---~g~ly  299 (387)
                          =.......... .......++.+  ++...+.++.+..+.++|+++.+-...-.+-...  -.++.+.   ++.++
T Consensus       140 ----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          140 ----NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD--VLCLDLAPSETGNTF  213 (354)
T ss_dssp             ----TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECCCSSCCEE
T ss_pred             ----cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC--eEEEEEEeCCCCCEE
Confidence                00000000000 00001122222  3444555555678999999877543221100000  1122221   35677


Q ss_pred             EEeCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          300 GIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.++.+.+||..+.+....  ..........+  ..++..++.|+.++.+.+||+...
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQA--FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEeCCCeEEEEECCCCcEEEE--ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            7777889999999988754332  22222222222  236788888888888999998743

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.1  Score=45.99  Aligned_cols=186  Identities=9%  Similarity=-0.027  Sum_probs=91.5

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      .++..++.|+.+       ..+.+||..+.+-...-..........+..-++++++.|+.+.        .+.+||....
T Consensus        27 ~~~~~l~s~~~d-------g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~~~~~~~~   91 (313)
T 3odt_A           27 VDDSKVASVSRD-------GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT--------MINGVPLFAT   91 (313)
T ss_dssp             EETTEEEEEETT-------SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS--------CEEEEETTCC
T ss_pred             cCCCEEEEEEcC-------CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC--------eEEEEEeeec
Confidence            455556666532       4678888876654332111111111122222556666666543        4566665443


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-Ee-CCeEEEEe
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MD-EEVLYGID  302 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~-~g~ly~~g  302 (387)
                      ..   ...+..+...   ......+.+++.+.+.++....+.+||...........  . . ....++ .. ++..++.+
T Consensus        92 ~~---~~~~~~~~~~---~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~-~-~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           92 SG---EDPLYTLIGH---QGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAH--N-A-SVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             TT---SCC-CEECCC---SSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECC--S-S-CEEEEEEEETTTTEEEEE
T ss_pred             CC---CCcccchhhc---ccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccC--C-C-ceeEEEEccCCCCEEEEE
Confidence            20   1111111111   11133444567777777777889999933322222111  0 0 111222 22 56677777


Q ss_pred             CCCCeEEEEeCCCCceEEccccccccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          303 ENSCTLSKYDEVMDDWKEVVKSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~v~~~~~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.+.+||..+..- .+ ....... .......+++ ++.++.++.+.+||+.+.
T Consensus       162 ~~d~~i~i~d~~~~~~-~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~  215 (313)
T 3odt_A          162 SADKTIKLWQNDKVIK-TF-SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG  215 (313)
T ss_dssp             ETTSCEEEEETTEEEE-EE-CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred             ECCCCEEEEecCceEE-EE-eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence            7789999999432211 11 1111111 1223344667 667777889999998854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.00  E-value=0.033  Score=50.40  Aligned_cols=187  Identities=9%  Similarity=0.035  Sum_probs=99.2

Q ss_pred             CEEEEEcCccCCCCCCCCccEEEeCCCCceee-CCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      +.+++.|+.+       ..+.+||..+.+-.. +.....  .-.+.+..  ++.+++.|+.+.        .+.+||..+
T Consensus        85 ~~~l~~~~~d-------g~i~v~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSR-------GIIRIINPITMQCIKHYVGHGN--AINELKFHPRDPNLLLSVSKDH--------ALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETT-------CEEEEECTTTCCEEEEEESCCS--CEEEEEECSSCTTEEEEEETTS--------CEEEEETTT
T ss_pred             CCEEEEecCC-------CEEEEEEchhceEeeeecCCCC--cEEEEEECCCCCCEEEEEeCCC--------eEEEEEeec
Confidence            4566666632       367888988765332 111111  11112222  556777776543        688999988


Q ss_pred             CccccCeEEc-CCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceee-ccc---------cc--------
Q 044903          224 GEKNSRWEKT-GELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDD-MRE---------GM--------  282 (387)
Q Consensus       224 ~~~~~~W~~~-~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~---------~~--------  282 (387)
                      .+    -... ..+....   .....+.+  ++...+.++.+..+.+||..+.+-.. +..         ..        
T Consensus       148 ~~----~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          148 DT----LVAIFGGVEGHR---DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             TE----EEEEECSTTSCS---SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             Ce----EEEEeccccccc---CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence            76    3322 1111110   11223333  46666677767789999998653211 000         00        


Q ss_pred             --------cCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce------------EEccccccccC--ceeEEEeC--C
Q 044903          283 --------VRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDW------------KEVVKSDLLKG--ARHAAAGG--G  338 (387)
Q Consensus       283 --------~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W------------~~v~~~~~~~~--~~~~~~~~--~  338 (387)
                              .....-.+++.. +.+++.++.++.|.+||..+..=            ..+........  .......+  +
T Consensus       221 ~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  299 (366)
T 3k26_A          221 FPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ  299 (366)
T ss_dssp             CCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred             cCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence                    011112234444 55677777789999999865421            11111111111  12223345  8


Q ss_pred             eEEEEecCCceEEEEEecCC
Q 044903          339 RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       339 ~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++++.|+.++.+.+||+...
T Consensus       300 ~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          300 KMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             SEEEEECTTSCEEEEECCSS
T ss_pred             cEEEEEecCCcEEEEECCCC
Confidence            88888888899999999854

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.99  E-value=0.02  Score=51.74  Aligned_cols=187  Identities=10%  Similarity=0.007  Sum_probs=96.2

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCC--CceeeeEE-----eeCCEEEEEecCCCCCCCCCCceE
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVT--PRRWCAAG-----YSRGAVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~--~r~~~~~~-----~~~~~iyv~GG~~~~~~~~~~~~v  216 (387)
                      ++..++.|+.+       ..+.+||..+.+  ...+.....  .+...+.+     .-++.+++.|+.+.        .+
T Consensus       128 ~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~--------~i  192 (357)
T 3i2n_A          128 GAPEIVTGSRD-------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG--------DI  192 (357)
T ss_dssp             CCCEEEEEETT-------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS--------EE
T ss_pred             CccEEEEEeCC-------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC--------eE
Confidence            45555665532       357888887764  333322221  11111111     13566666666533        68


Q ss_pred             EEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-----CCEEEEEeeeCCeEEEEECCCCcee-eccc-cc-cCCCCC
Q 044903          217 EKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-----KGKLCLVNVKGAEGAVYDVVANTWD-DMRE-GM-VRGWRG  288 (387)
Q Consensus       217 ~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-----~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~-~~-~~~~~~  288 (387)
                      .+||..+.+    -.........      ...+.+     ++..++.++....+.+||..+..-. .+.. .. .....-
T Consensus       193 ~i~d~~~~~----~~~~~~~~~~------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v  262 (357)
T 3i2n_A          193 KLFDLRNMA----LRWETNIKNG------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV  262 (357)
T ss_dssp             EEEETTTTE----EEEEEECSSC------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCE
T ss_pred             EEEECccCc----eeeecCCCCc------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCE
Confidence            899998877    3222211111      223333     5666677776678889987653211 0000 00 011111


Q ss_pred             cEEEEe-CCe-EEEEeCCCCeEEEEeCCCCc-----------------eEEccccccccCceeEE--EeCCeEEE-EecC
Q 044903          289 PVAAMD-EEV-LYGIDENSCTLSKYDEVMDD-----------------WKEVVKSDLLKGARHAA--AGGGRVCA-VCEN  346 (387)
Q Consensus       289 ~~~~~~-~g~-ly~~g~~~~~v~~yd~~~~~-----------------W~~v~~~~~~~~~~~~~--~~~~~l~v-~gg~  346 (387)
                      .+++.. ++. +++.++.++.|.+||..+..                 +..+............+  ..+++.++ .++.
T Consensus       263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~  342 (357)
T 3i2n_A          263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF  342 (357)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence            223332 345 67777788999999987542                 23333333233332222  33555555 5777


Q ss_pred             CceEEEEEecC
Q 044903          347 GGGIVVVDVKA  357 (387)
Q Consensus       347 ~~~i~v~d~~~  357 (387)
                      ++.+.+||+.+
T Consensus       343 d~~i~iw~~~~  353 (357)
T 3i2n_A          343 DQTVRVLIVTK  353 (357)
T ss_dssp             TSEEEEEEECC
T ss_pred             CCcEEEEECCC
Confidence            89999999984

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.025  Score=51.20  Aligned_cols=189  Identities=13%  Similarity=0.105  Sum_probs=96.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCC--CceeeCCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPIC--RTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t--~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~  221 (387)
                      ++..++.|+.+       ..+.+||..+  ..++.+..+.........+..  ++.+++.|+.+.        .+.+||.
T Consensus       118 ~g~~las~s~D-------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~--------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRD-------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD--------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETT-------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEeCC-------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC--------eEEEEEC
Confidence            45566665532       3567888742  233332222111111112222  456677776644        6778887


Q ss_pred             CCCccccCeEEcCCCCCCcccccceeEEEE--C--CEEEEEeeeCCeEEEEECCCC------ceeeccccccC--CCCCc
Q 044903          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVAN------TWDDMREGMVR--GWRGP  289 (387)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~--g~lyv~gg~~~~i~~yD~~~~------~W~~~~~~~~~--~~~~~  289 (387)
                      .++.    |..+..+....   .....+.+  +  +...+.|+.+..+.+||....      .|..... +..  ...-.
T Consensus       183 ~~~~----~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~~h~~~v~  254 (330)
T 2hes_X          183 YDDD----WECVAVLNGHE---GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI-LPDVHKRQVY  254 (330)
T ss_dssp             ETTE----EEEEEEECCCS---SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE-CCSCCSSCEE
T ss_pred             CCCC----eeEEEEccCCC---CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee-cccccccceE
Confidence            7776    66554332111   01122222  2  334455555577788876432      3543322 111  11112


Q ss_pred             EEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccc-cccC-ceeEEEe----CCeEEEEecCCceEEEEEecC
Q 044903          290 VAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD-LLKG-ARHAAAG----GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       290 ~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~-~~~~-~~~~~~~----~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      +++...+.+++.++.++.|.+||..+..|..+.... .... ....+..    ++++++.|+.++.+.+||+.+
T Consensus       255 ~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          255 NVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            333334445666667899999999988887654322 1222 2222222    577888888899999999873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.98  E-value=0.14  Score=47.75  Aligned_cols=178  Identities=10%  Similarity=0.069  Sum_probs=96.3

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      +.+++||..|++..++-.+........++.  -+++.++.|+.+.        .+.+||..+.+    -.....-..   
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg--------~v~iWd~~~~~----~~~~~~~h~---  189 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA--------EVQLWDVQQQK----RLRNMTSHS---  189 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE----EEEEECCCS---
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC--------eEEEEEcCCCc----EEEEEeCCC---
Confidence            468899999988766543332222222222  2567777776644        68999998876    222211111   


Q ss_pred             cccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eE
Q 044903          242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD--WK  319 (387)
Q Consensus       242 ~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~--W~  319 (387)
                        ....+...++.+.+.|+....+..+|.........................++...+.++.++.+.+||..+..  +.
T Consensus       190 --~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~  267 (420)
T 4gga_A          190 --ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV  267 (420)
T ss_dssp             --SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred             --CceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce
Confidence              11445566777777777778888998876543221100011100111122345666677778899999987543  22


Q ss_pred             EccccccccCcee-EE--EeCCeEEEEecC--CceEEEEEecCC
Q 044903          320 EVVKSDLLKGARH-AA--AGGGRVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       320 ~v~~~~~~~~~~~-~~--~~~~~l~v~gg~--~~~i~v~d~~~~  358 (387)
                      .+........... ++  ..++.+++++++  +..|.+||+.++
T Consensus       268 ~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            2222222222222 22  225566665443  567888888754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.97  E-value=0.014  Score=55.08  Aligned_cols=189  Identities=8%  Similarity=-0.029  Sum_probs=98.9

Q ss_pred             CEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-CCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      +.+++.|+.+       ..+.+||..+.+-..+-.+. ....-.+.+.  .++.+++.|+.+.        .+.+||..+
T Consensus       132 ~~~lasGs~d-------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~--------~v~iwd~~~  196 (435)
T 4e54_B          132 PSTVAVGSKG-------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG--------TTRLQDFKG  196 (435)
T ss_dssp             TTCEEEEETT-------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS--------CEEEEETTS
T ss_pred             CCEEEEEeCC-------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC--------EEEEeeccC
Confidence            4455566532       35777887766543321111 1111112222  3456667776543        678899887


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe--CCeEEEE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGI  301 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~  301 (387)
                      +.    -..+......... .......-++.+.+.|+....+.++|.....-..+..  ... .-.+++..  ++.+++.
T Consensus       197 ~~----~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~--h~~-~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          197 NI----LRVFASSDTINIW-FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM--HKK-KVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             CE----EEEEECCSSCSCC-CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBC--CSS-CEEEEEECTTCSSEEEE
T ss_pred             Cc----eeEEeccCCCCcc-EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEec--ccc-eEEeeeecCCCceEEEE
Confidence            76    5444322111110 0011222367777777777889999987543222211  000 11122322  3457777


Q ss_pred             eCCCCeEEEEeCCCCceEEc-cccccccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          302 DENSCTLSKYDEVMDDWKEV-VKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       302 g~~~~~v~~yd~~~~~W~~v-~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.++.|.+||..+..-... ............+  ..+|+.++.|+.++.|.+||+...
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            77889999999876532211 1111122222222  236778888888889999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.96  E-value=0.069  Score=49.56  Aligned_cols=187  Identities=15%  Similarity=0.112  Sum_probs=97.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++..++.|+.+       ..+.+||..+.+-...-.-... .-.+.+. -++..++.|+.+.        .+.+||..+.
T Consensus       134 dg~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~--------~v~iwd~~~~  197 (393)
T 1erj_A          134 DGKFLATGAED-------RLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDR--------TVRIWDLRTG  197 (393)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTS--------EEEEEETTTT
T ss_pred             CCCEEEEEcCC-------CeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCC--------cEEEEECCCC
Confidence            56677766632       4678899887754332111111 1111222 2455556665543        6888999887


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCceee-ccccc--cCCCCC--cEEEE-eC
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDD-MREGM--VRGWRG--PVAAM-DE  295 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~--~~~~~~--~~~~~-~~  295 (387)
                      +    ....-.....      ...+.+   ++++.+.|+.+..+.+||..+..-.. +....  ..+...  .+++. .+
T Consensus       198 ~----~~~~~~~~~~------v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          198 Q----CSLTLSIEDG------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             E----EEEEEECSSC------EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             e----eEEEEEcCCC------cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence            6    4332221111      222222   67777787777889999998765322 11100  011111  12222 25


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceEEcc----------ccccccCce-eE-EEeCCeEEEEecCCceEEEEEecCC
Q 044903          296 EVLYGIDENSCTLSKYDEVMDDWKEVV----------KSDLLKGAR-HA-AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~W~~v~----------~~~~~~~~~-~~-~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++..+.++.++.|.+||..+..-....          ......... ++ ...+++.++.|+.++.+.+||..++
T Consensus       268 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            667777778899999998754221110          000111111 22 2335677777778889999998854

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.93  E-value=0.077  Score=47.48  Aligned_cols=190  Identities=12%  Similarity=0.001  Sum_probs=102.3

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      .++.||+....       ...++++|+.++. ......+ .+ -...+. -++++||+.....      ...+..||+.+
T Consensus        41 ~~g~lyv~d~~-------~~~I~~~d~~g~~-~~~~~~~-~~-p~gia~~~dG~l~vad~~~~------~~~v~~~d~~~  104 (306)
T 2p4o_A           41 PDGTIFVTNHE-------VGEIVSITPDGNQ-QIHATVE-GK-VSGLAFTSNGDLVATGWNAD------SIPVVSLVKSD  104 (306)
T ss_dssp             TTSCEEEEETT-------TTEEEEECTTCCE-EEEEECS-SE-EEEEEECTTSCEEEEEECTT------SCEEEEEECTT
T ss_pred             CCCCEEEEeCC-------CCeEEEECCCCce-EEEEeCC-CC-ceeEEEcCCCcEEEEeccCC------cceEEEEcCCC
Confidence            36678887531       2468899987642 2211111 11 122222 3578998864321      12577889888


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC---ceeeccc----cccCCCCCc-EEEEeC
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN---TWDDMRE----GMVRGWRGP-VAAMDE  295 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~---~W~~~~~----~~~~~~~~~-~~~~~~  295 (387)
                      ++    .+.+...+..++.  ...+...++.+|+.......++++|+.+.   .|..-..    ........+ .+...+
T Consensus       105 g~----~~~~~~~~~~~~~--~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg  178 (306)
T 2p4o_A          105 GT----VETLLTLPDAIFL--NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  178 (306)
T ss_dssp             SC----EEEEEECTTCSCE--EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             Ce----EEEEEeCCCcccc--CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCC
Confidence            88    7766555433221  11112235667876543468899998754   2321110    011111112 233445


Q ss_pred             CeEEEEeCCCCeEEEEeCCC-CceEEccccccccCcee-EEEeCCeEEEEecCCceEEEEEec
Q 044903          296 EVLYGIDENSCTLSKYDEVM-DDWKEVVKSDLLKGARH-AAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~-~~W~~v~~~~~~~~~~~-~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +.||+.....+.|++||.+. .+............... ++.-+|+|||....++.|.++|+.
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            68999987778999999875 22211111111112222 334477898887667888888876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.92  E-value=0.13  Score=45.34  Aligned_cols=190  Identities=8%  Similarity=-0.006  Sum_probs=97.4

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCC----ceeeeEEeeCCEEEEE----ecCCCC-----CCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP----RRWCAAGYSRGAVYVA----SGIGSQ-----FSSD  211 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~----r~~~~~~~~~~~iyv~----GG~~~~-----~~~~  211 (387)
                      .++.+|+....       ...+.+||+.+++.+.+......    +....+..-++++|+.    |.....     ....
T Consensus        78 ~dg~l~v~~~~-------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~  150 (296)
T 3e5z_A           78 KQGHLIACSHG-------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL  150 (296)
T ss_dssp             TTCCEEEEETT-------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred             CCCcEEEEecC-------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccC
Confidence            36777776431       14689999988887765322111    1112223336789987    432100     0001


Q ss_pred             CCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECC-CCce-eeccc-cccCCC
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVV-ANTW-DDMRE-GMVRGW  286 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~-~~~W-~~~~~-~~~~~~  286 (387)
                      ....++.||+. ++    ...+..-..  .    ..++.+  +|++++.+.....+.+||+. +++. ..... ....+.
T Consensus       151 ~~~~l~~~~~~-g~----~~~~~~~~~--~----~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  219 (296)
T 3e5z_A          151 PGRWVFRLAPD-GT----LSAPIRDRV--K----PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK  219 (296)
T ss_dssp             SSCEEEEECTT-SC----EEEEECCCS--S----EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred             CCcEEEEECCC-CC----EEEeecCCC--C----CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence            12367888887 54    444321110  0    122333  57766444444789999986 4444 11111 011111


Q ss_pred             CCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE-EeCC-eEEEEecCCceEEEEEecCC
Q 044903          287 RGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       287 ~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~-~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ......-.+|+||+..  .+.|.+||++.+....+.....  ....+. .-++ .||+.+  ...++.+++.+.
T Consensus       220 p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t--~~~l~~~~~~~~  287 (296)
T 3e5z_A          220 TDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT--TSNLCFGGPEGRTLYMTV--STEFWSIETNVR  287 (296)
T ss_dssp             CCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC--CCEEEEESTTSCEEEEEE--TTEEEEEECSCC
T ss_pred             CCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC--ceeEEEECCCCCEEEEEc--CCeEEEEEcccc
Confidence            1112233467899887  6789999998665554443222  112122 2233 466663  357888888754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.91  E-value=0.061  Score=49.44  Aligned_cols=106  Identities=11%  Similarity=0.057  Sum_probs=60.4

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccc--c--CCCCCcEEEE-eCCeEEEEeCCC---CeEEEEeCCCCceEEccc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGM--V--RGWRGPVAAM-DEEVLYGIDENS---CTLSKYDEVMDDWKEVVK  323 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~--~~~~~~~~~~-~~g~ly~~g~~~---~~v~~yd~~~~~W~~v~~  323 (387)
                      ++ +++.++....+.+||..+.+-...-...  .  ....-.+++. .++++++.++.+   +.|.+||..+.+-.....
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~  275 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  275 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec
Confidence            46 6666666688999999876432211110  0  0111122232 246667777667   899999997664222111


Q ss_pred             ccc-----------ccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          324 SDL-----------LKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       324 ~~~-----------~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+.           .......+  ..+++.++.|+.++.+.+||+...
T Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            110           22222222  336788888888899999999854

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.91  E-value=0.17  Score=44.63  Aligned_cols=182  Identities=14%  Similarity=0.090  Sum_probs=97.1

Q ss_pred             EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccc
Q 044903          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN  227 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~  227 (387)
                      .+|+++...       ..+++||+.++ .+.+.. +.......+..-++++|+.....        ..+.+||+.+++  
T Consensus        41 ~l~~~~~~~-------~~i~~~~~~~~-~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~--------~~i~~~d~~~g~--  101 (296)
T 3e5z_A           41 AVIFSDVRQ-------NRTWAWSDDGQ-LSPEMH-PSHHQNGHCLNKQGHLIACSHGL--------RRLERQREPGGE--  101 (296)
T ss_dssp             EEEEEEGGG-------TEEEEEETTSC-EEEEES-SCSSEEEEEECTTCCEEEEETTT--------TEEEEECSTTCC--
T ss_pred             EEEEEeCCC-------CEEEEEECCCC-eEEEEC-CCCCcceeeECCCCcEEEEecCC--------CeEEEEcCCCCc--
Confidence            478877532       46899999987 555432 11222222222367888765322        368899998888  


Q ss_pred             cCeEEcCCCCCCc-ccccceeEEEECCEEEEEe----ee-------------CCeEEEEECCCCceeeccccccCCCCCc
Q 044903          228 SRWEKTGELKDGR-FSREAIDAVGWKGKLCLVN----VK-------------GAEGAVYDVVANTWDDMREGMVRGWRGP  289 (387)
Q Consensus       228 ~~W~~~~~~~~~~-~~~~~~~~v~~~g~lyv~g----g~-------------~~~i~~yD~~~~~W~~~~~~~~~~~~~~  289 (387)
                        ...+....... ...-...++.-+|++|+..    ..             ...++.||+. ++...+......   ..
T Consensus       102 --~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~---~~  175 (296)
T 3e5z_A          102 --WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK---PN  175 (296)
T ss_dssp             --EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS---EE
T ss_pred             --EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC---Cc
Confidence              76553221110 0000112233368899862    21             1478888887 554443321111   11


Q ss_pred             EEEE-eCCeEEEEeCCCCeEEEEeCC-CCce-EEcccc-ccccCcee-EEEeCCeEEEEecCCceEEEEEec
Q 044903          290 VAAM-DEEVLYGIDENSCTLSKYDEV-MDDW-KEVVKS-DLLKGARH-AAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       290 ~~~~-~~g~ly~~g~~~~~v~~yd~~-~~~W-~~v~~~-~~~~~~~~-~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      .++. .++++++.+...+.|++||.+ +.+. ...... ........ ++.-+|+|||..  +..+.+||+.
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            2332 245656666666789999986 4444 211111 11111222 334578888886  6778888887

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.91  E-value=0.11  Score=47.62  Aligned_cols=200  Identities=8%  Similarity=0.003  Sum_probs=98.8

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc-------eeeCCCCCCCceeeeEEeeC----C---EEEEEecCCCC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRT-------WTFGPELVTPRRWCAAGYSR----G---AVYVASGIGSQ  207 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~-------W~~l~~~~~~r~~~~~~~~~----~---~iyv~GG~~~~  207 (387)
                      ++.....+++.|+.+       ..+.+||..+.+       -..+.....+. ......-+    +   ++++.|+.+. 
T Consensus        21 ~~~~~~~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~g~~~~~l~s~~~dg-   91 (397)
T 1sq9_A           21 SVSACNSFTVSCSGD-------GYLKVWDNKLLDNENPKDKSYSHFVHKSGL-HHVDVLQAIERDAFELCLVATTSFSG-   91 (397)
T ss_dssp             EEEECSSEEEEEETT-------SEEEEEESBCCTTCCGGGGEEEEECCTTCE-EEEEEEEEEETTTEEEEEEEEEETTS-
T ss_pred             EEEecCCeEEEEcCC-------CEEEEEECCCcccccCCCcceEEecCCCcE-EEEEEecccccCCccccEEEEEcCCC-
Confidence            344444666666532       467888887766       22222111111 11111223    5   6777776543 


Q ss_pred             CCCCCCceEEEEeCCCCccc--cCeEEcCCCCCCcccccceeEEEE-----CCEE-EEEeeeCCeEEEEECCC------C
Q 044903          208 FSSDVAKSVEKWDLMNGEKN--SRWEKTGELKDGRFSREAIDAVGW-----KGKL-CLVNVKGAEGAVYDVVA------N  273 (387)
Q Consensus       208 ~~~~~~~~v~vyd~~t~~~~--~~W~~~~~~~~~~~~~~~~~~v~~-----~g~l-yv~gg~~~~i~~yD~~~------~  273 (387)
                             .+.+||..+.+..  ..+..+...+...........+..     ++.. ++.++....+.+||..+      .
T Consensus        92 -------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           92 -------DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             -------CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             -------CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence                   5778887766510  003333322100000011222333     4666 66776667899998876      3


Q ss_pred             c---ee---eccc----cccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccc---cCceeEE--Ee
Q 044903          274 T---WD---DMRE----GMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLL---KGARHAA--AG  336 (387)
Q Consensus       274 ~---W~---~~~~----~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~---~~~~~~~--~~  336 (387)
                      .   |.   .+..    .........+++.. ++ +++.++.++.+.+||..+.+-...... ...   ......+  ..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence            2   21   1100    00011112334433 45 777777889999999987643332221 001   2222222  33


Q ss_pred             CCeEEEEecCC---ceEEEEEecCC
Q 044903          337 GGRVCAVCENG---GGIVVVDVKAA  358 (387)
Q Consensus       337 ~~~l~v~gg~~---~~i~v~d~~~~  358 (387)
                      ++++++.++.+   +.+.+||..+.
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTC
T ss_pred             CCCEEEEEecCCCCceEEEEECCCC
Confidence            67788887766   88999998754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.027  Score=52.22  Aligned_cols=147  Identities=11%  Similarity=0.072  Sum_probs=81.1

Q ss_pred             CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc-ccceeEEEE--CC-EEEEEeeeCC---eEEEE
Q 044903          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS-REAIDAVGW--KG-KLCLVNVKGA---EGAVY  268 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~-~~~~~~v~~--~g-~lyv~gg~~~---~i~~y  268 (387)
                      +.+++.|+.+.        .+.+||..+.+    -...-........ ......+.+  ++ .+++.++...   .+.+|
T Consensus       178 ~~~l~~~~~dg--------~v~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          178 AHVFASAGSSN--------FASIWDLKAKK----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             TTEEEEESSSS--------CEEEEETTTTE----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             CcEEEEEcCCC--------CEEEEECCCCC----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            56777776543        68899998876    3332222210000 011223333  23 4666666555   89999


Q ss_pred             ECCCCc--eeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc--eeEEEeCC-eEE
Q 044903          269 DVVANT--WDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA--RHAAAGGG-RVC  341 (387)
Q Consensus       269 D~~~~~--W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~~-~l~  341 (387)
                      |..+..  -..+..  .....-.+++..  ++.+++.++.++.|.+||.++.+-  +.........  ......++ +++
T Consensus       246 d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l  321 (416)
T 2pm9_A          246 DLRNANTPLQTLNQ--GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTKFAPEAPDLF  321 (416)
T ss_dssp             ETTSTTSCSBCCCS--CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEEECTTCTTEE
T ss_pred             eCCCCCCCcEEeec--CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEEECCCCCCEE
Confidence            998753  111110  011111233332  567777777889999999987643  2222222222  22223345 788


Q ss_pred             EEecCCceEEEEEecCC
Q 044903          342 AVCENGGGIVVVDVKAA  358 (387)
Q Consensus       342 v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.++.+.+||+.+.
T Consensus       322 ~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             EECCSSSEEEEEESCCC
T ss_pred             EEEecCCcEEEEEccCC
Confidence            88888899999999854

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.90  E-value=0.06  Score=47.80  Aligned_cols=193  Identities=12%  Similarity=0.022  Sum_probs=101.1

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCC--C-CCceeeeEEe-eC-CEEEEEecCCCCCCCCCCceEEEE
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL--V-TPRRWCAAGY-SR-GAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~--~-~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      .++.+|+..............+++||+.+++++.+...  . ....-.+.+. -+ +++||....         ..+.+|
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~---------~~l~~~   97 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---------LGLLVV   97 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---------TEEEEE
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC---------CCEEEE
Confidence            36778887110000000124689999999888764320  0 0011112222 24 788887541         157889


Q ss_pred             eCCCCccccCeEEc-CCCCCCcccccceeEEE--ECCEEEEEeeeC---------------CeEEEEECCCCceeecccc
Q 044903          220 DLMNGEKNSRWEKT-GELKDGRFSREAIDAVG--WKGKLCLVNVKG---------------AEGAVYDVVANTWDDMREG  281 (387)
Q Consensus       220 d~~t~~~~~~W~~~-~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~---------------~~i~~yD~~~~~W~~~~~~  281 (387)
                      |+. ++    ...+ ......... .....+.  -+|++|+.+...               ..+..||+. .+...+...
T Consensus        98 d~~-g~----~~~~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~  170 (314)
T 1pjx_A           98 QTD-GT----FEEIAKKDSEGRRM-QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA  170 (314)
T ss_dssp             ETT-SC----EEECCSBCTTSCBC-BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred             eCC-CC----EEEEEeccCCCccc-cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence            998 77    6665 322211100 0111223  367898875432               468888886 555443221


Q ss_pred             ccCCCCCcEEEEe-----CC-eEEEEeCCCCeEEEEeCC-CCceEEcc---ccccc--cCceeEE-EeCCeEEEEecCCc
Q 044903          282 MVRGWRGPVAAMD-----EE-VLYGIDENSCTLSKYDEV-MDDWKEVV---KSDLL--KGARHAA-AGGGRVCAVCENGG  348 (387)
Q Consensus       282 ~~~~~~~~~~~~~-----~g-~ly~~g~~~~~v~~yd~~-~~~W~~v~---~~~~~--~~~~~~~-~~~~~l~v~gg~~~  348 (387)
                      ...   ...++..     ++ .||+.+...+.|++||.+ +.+.....   ..+..  .....++ .-+|.||+....++
T Consensus       171 ~~~---~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          171 FQF---PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             ESS---EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             CCC---cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence            111   1223333     34 588887667889999976 34433211   11111  1122233 34688988866677


Q ss_pred             eEEEEEec
Q 044903          349 GIVVVDVK  356 (387)
Q Consensus       349 ~i~v~d~~  356 (387)
                      .+.+||+.
T Consensus       248 ~i~~~d~~  255 (314)
T 1pjx_A          248 HIEVFGPD  255 (314)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEcCC
Confidence            89999887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.90  E-value=0.0004  Score=63.54  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             CCCCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCC
Q 044903           40 QPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPP   81 (387)
Q Consensus        40 ~~~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~   81 (387)
                      ...|..||+|++.+||.+|+   +.+++.|||+|+.++.++..+.
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~   50 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSS
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhe
Confidence            35688999999999999999   6677899999999998887643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.89  E-value=0.093  Score=49.27  Aligned_cols=198  Identities=13%  Similarity=0.005  Sum_probs=108.8

Q ss_pred             eEEE-eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          141 QLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       141 ~~~~-~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      .++. .++.||+....       ...+.++|+.+++-..+.... .....+....++.+|+....+.       ..+.++
T Consensus       135 ~la~d~~g~lyv~d~~-------~~~I~~id~~~g~~~~~~~~~-~~~~ia~~~~g~~l~~~d~~~~-------~~I~~~  199 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRD-------DPRVRLISVDDNKVTTVHPGF-KGGKPAVTKDKQRVYSIGWEGT-------HTVYVY  199 (409)
T ss_dssp             EEEECSTTEEEEEETT-------TTEEEEEETTTTEEEEEEETC-CBCBCEECTTSSEEEEEBSSTT-------CEEEEE
T ss_pred             EEEEeCCCCEEEEecC-------CCcEEEEECCCCEEEEeeccC-CCCceeEecCCCcEEEEecCCC-------ceEEEE
Confidence            3444 46788888652       256899999988766543221 1111222223456777644322       178888


Q ss_pred             eCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeecc---ccccCCCC-CcEEEE
Q 044903          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMR---EGMVRGWR-GPVAAM  293 (387)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~---~~~~~~~~-~~~~~~  293 (387)
                      |+.++.   ....+......... ..+..++.  +|.||+... ...+..||+.+..-..+.   .....++. ...+++
T Consensus       200 d~~~~~---~~~~~g~~~~~~~~-~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~  274 (409)
T 3hrp_A          200 MKASGW---APTRIGQLGSTFSG-KIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY  274 (409)
T ss_dssp             EGGGTT---CEEEEEECCTTSCS-CCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred             EcCCCc---eeEEeeeccchhcC-CcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence            887653   12233111110000 01222332  689999533 457999999877654441   10111221 114554


Q ss_pred             e--CCeEEEEeCCCCeEEEEeCCCCceEEcccc------------ccccCceeEEE-eCCeEEEEec-CCceEEEEEecC
Q 044903          294 D--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS------------DLLKGARHAAA-GGGRVCAVCE-NGGGIVVVDVKA  357 (387)
Q Consensus       294 ~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~------------~~~~~~~~~~~-~~~~l~v~gg-~~~~i~v~d~~~  357 (387)
                      .  ++.||+.+...+.|++||++...-......            ..+..+..++. -+|+|||.-. .++.|..+|+..
T Consensus       275 ~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          275 YFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             eCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence            4  589999988788999999876522222211            00122334443 4678999977 788899999543


Q ss_pred             C
Q 044903          358 A  358 (387)
Q Consensus       358 ~  358 (387)
                      +
T Consensus       355 G  355 (409)
T 3hrp_A          355 G  355 (409)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.86  E-value=0.14  Score=46.12  Aligned_cols=168  Identities=11%  Similarity=0.031  Sum_probs=94.1

Q ss_pred             CccEEEeCCCCceeeC-CCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCC----CccccCeEEc-C-
Q 044903          164 TRPLIFDPICRTWTFG-PELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN----GEKNSRWEKT-G-  234 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l-~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t----~~~~~~W~~~-~-  234 (387)
                      +.+.++|+.+.....+ +.+..   -.+.+.  .+++||+....        ...+.++|+..    ..    -..+ . 
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~---p~g~~~d~~~~~ly~~D~~--------~~~I~~~~~~g~~~~~~----~~~~~~~   74 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRN---VVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSS----YDTVISR   74 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSS---EEEEEEETTTTEEEEEETT--------TTEEEEEEC------------CEEEECS
T ss_pred             CeEEEEECCCcceEehhcCCCc---eEEEEEEeCCCEEEEEECC--------CCcEEEEECCCCCCCcc----cEEEEeC
Confidence            3567777777665553 22221   122232  25789998543        23778888876    22    2222 1 


Q ss_pred             CCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccc-cccCCCCCcEEEE--eCCeEEEEeCCC-CeE
Q 044903          235 ELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMRE-GMVRGWRGPVAAM--DEEVLYGIDENS-CTL  308 (387)
Q Consensus       235 ~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~-~~~~~~~~~~~~~--~~g~ly~~g~~~-~~v  308 (387)
                      .+..+      ...++  .++.||+.......+.++|++...-+.+-. .+..   -..+++  .++.||+.+... +.|
T Consensus        75 ~~~~p------~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~---P~~iavdp~~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           75 DIQAP------DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK---PRAIVVDPVHGFMYWTDWGTPAKI  145 (316)
T ss_dssp             SCSCC------CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC---EEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCCCc------CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCC---cceEEeCCCCCEEEEEccCCCCeE
Confidence            11111      22232  478999987666789999987653332221 1111   123444  368999998543 789


Q ss_pred             EEEeCCCCceEEccccccccCceeEEEe--CCeEEEEecCCceEEEEEec
Q 044903          309 SKYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       309 ~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ++++++...=+.+... ....+.+++..  +++||+.-.....|.++|..
T Consensus       146 ~~~~~dG~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             EEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEcCCCCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            9999876543333221 22334445443  67899886667788888876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.83  E-value=0.11  Score=50.63  Aligned_cols=142  Identities=11%  Similarity=-0.047  Sum_probs=82.7

Q ss_pred             CEEEEEecC-CCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          196 GAVYVASGI-GSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       196 ~~iyv~GG~-~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++.++.|+. +.        .+.+||..+.+    ... ..+....   .....+.+  +|++.+.++....+.+||..+
T Consensus       456 ~~~l~~~~~~d~--------~i~~~~~~~~~----~~~-~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  519 (615)
T 1pgu_A          456 QNYVAVGLEEGN--------TIQVFKLSDLE----VSF-DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQS  519 (615)
T ss_dssp             SSEEEEEETTTS--------CEEEEETTEEE----EEE-ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEeecCCC--------eEEEEECCCcc----ccc-cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCC
Confidence            555555554 33        68899998876    532 1111111   11333344  778777777778899999987


Q ss_pred             CceeeccccccCCCCCcEEEE-e----------CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc--eeEEEeCCe
Q 044903          273 NTWDDMREGMVRGWRGPVAAM-D----------EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA--RHAAAGGGR  339 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-~----------~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~~~  339 (387)
                      .+-...-.... ...-.+++. .          ++++.+.++.++.|.+||.++.. ..+.....+...  ......+++
T Consensus       520 ~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          520 REVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             TEEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEETTE
T ss_pred             CcceeEeecCC-CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcCccceEEEEEcCCCC
Confidence            64432211101 111122232 2          57788888888999999998752 112222222222  234456788


Q ss_pred             EEEEecCCceEEEEEec
Q 044903          340 VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       340 l~v~gg~~~~i~v~d~~  356 (387)
                       ++.++.++.+.+||+.
T Consensus       598 -l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          598 -LVSSGADACIKRWNVV  613 (615)
T ss_dssp             -EEEEETTSCEEEEEEC
T ss_pred             -eEEecCCceEEEEeee
Confidence             7787888899999987

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.82  E-value=0.019  Score=61.79  Aligned_cols=186  Identities=11%  Similarity=0.016  Sum_probs=102.2

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..+++|+.+       ..+.+||..+.+......-........+..-+++..+.|+.+.        .+.+||..+++
T Consensus       972 ~g~~l~~g~~~-------g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg--------~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          972 HLEYVAFGDED-------GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS--------VIQVWNWQTGD 1036 (1249)
T ss_dssp             TSSEEEEEETT-------SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS--------BEEEEETTTTE
T ss_pred             CCCEEEEEcCC-------CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC--------EEEEEECCCCc
Confidence            45555665532       4678889887654432111111111112222556666666543        68899999887


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS  305 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~  305 (387)
                          ...........     ...+...+..++.++....+.+||..+++-...-.. ..+.-.......+++.++.++.+
T Consensus      1037 ----~~~~~~~~~~v-----~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A         1037 ----YVFLQAHQETV-----KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC-HQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp             ----EECCBCCSSCE-----EEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC-CSSCCCCEEECSSSSSCEEECCS
T ss_pred             ----eEEEecCCCcE-----EEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc-cCCcEEEEEECCCCCEEEEEcCC
Confidence                65443222111     222333333345556667899999987653221110 11111112223456677777788


Q ss_pred             CeEEEEeCCCCceEEccccccccCce--eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          306 CTLSKYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       306 ~~v~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.+.+||..+..  .+..........  .....+|++++.|+.++.+.+||+.++
T Consensus      1107 ~~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A         1107 KTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp             SCCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred             CcEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999987653  222222222322  233457888888888889999999854

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.81  E-value=0.061  Score=48.44  Aligned_cols=198  Identities=11%  Similarity=-0.039  Sum_probs=107.4

Q ss_pred             eeEEEe--CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCC----CceeeeEEee-CCEEEEEecCCCCCC---
Q 044903          140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT----PRRWCAAGYS-RGAVYVASGIGSQFS---  209 (387)
Q Consensus       140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~----~r~~~~~~~~-~~~iyv~GG~~~~~~---  209 (387)
                      +.++..  ++.||+....        ..+.++|+.+++.+.+.....    .+....++.- ++.|||.-.......   
T Consensus        83 ~gi~~~~~~g~l~v~d~~--------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCY--------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             EEEEEETTTTEEEEEETT--------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             ceEEEcCCCCcEEEEECC--------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence            444444  5788887431        237889988776655432111    1112222233 578999753211000   


Q ss_pred             ------CCCCceEEEEeCCCCccccCeEEcC-CCCCCcccccceeEEEECC-EEEEEeeeCCeEEEEECCCC---ceeec
Q 044903          210 ------SDVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVAN---TWDDM  278 (387)
Q Consensus       210 ------~~~~~~v~vyd~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~---~W~~~  278 (387)
                            ......+.+||+.+.+    ...+. .+..+.     ..+..-+| .||+.......+.+||+...   ..+..
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~----~~~~~~~~~~p~-----gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~  225 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKE----TTLLLKELHVPG-----GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL  225 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTE----EEEEEEEESCCC-----EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred             ceehcccCCCceEEEEeCCCCE----EEEeccCCccCc-----ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence                  0112468899998876    54432 111110     11222244 58887555578999998753   33332


Q ss_pred             cccccCCCCCcEEEE-eCCeEEEEeCC----------CCeEEEEeCCCCceEEcccccc--ccCceeEEEeCCeEEEEec
Q 044903          279 REGMVRGWRGPVAAM-DEEVLYGIDEN----------SCTLSKYDEVMDDWKEVVKSDL--LKGARHAAAGGGRVCAVCE  345 (387)
Q Consensus       279 ~~~~~~~~~~~~~~~-~~g~ly~~g~~----------~~~v~~yd~~~~~W~~v~~~~~--~~~~~~~~~~~~~l~v~gg  345 (387)
                      .. .+ +  ...+++ .+|.||+....          .+.|.+||++.+.-..+.....  ......++..+++|||.+.
T Consensus       226 ~~-~~-g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~  301 (322)
T 2fp8_A          226 VK-IP-N--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL  301 (322)
T ss_dssp             EE-CS-S--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECS
T ss_pred             Ee-CC-C--CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeec
Confidence            21 11 1  112232 34689988643          3569999998665544443211  2333445557899999977


Q ss_pred             CCceEEEEEecCC
Q 044903          346 NGGGIVVVDVKAA  358 (387)
Q Consensus       346 ~~~~i~v~d~~~~  358 (387)
                      .+..|.++++..+
T Consensus       302 ~~~~i~~~~~~~~  314 (322)
T 2fp8_A          302 FHGSVGILVYDKK  314 (322)
T ss_dssp             SCSEEEEEEC---
T ss_pred             CCCceEEEecccc
Confidence            7889999998744

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.81  E-value=0.077  Score=47.45  Aligned_cols=142  Identities=14%  Similarity=0.124  Sum_probs=78.0

Q ss_pred             EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCc
Q 044903          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      .+++.|+.+.        .+.+||..+.+    -...-.-...     ...++.+  ++++.+.|+.+..+.+||..+..
T Consensus       186 ~~~~s~~~d~--------~i~i~d~~~~~----~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          186 PIIVSCGWDK--------LVKVWNLANCK----LKTNHIGHTG-----YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             CEEEEEETTS--------CEEEEETTTTE----EEEEECCCSS-----CEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             cEEEEEcCCC--------EEEEEECCCCc----eeeEecCCCC-----cEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            4555555433        57888988776    3322111111     1222332  57777777777889999987654


Q ss_pred             eeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccc-------cccCce-e-EEEeCCeEEEEec
Q 044903          275 WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD-------LLKGAR-H-AAAGGGRVCAVCE  345 (387)
Q Consensus       275 W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~-------~~~~~~-~-~~~~~~~l~v~gg  345 (387)
                      -...-.   ....-.+++...+..++.++.++.|.+||.++..-......+       ...... + ....+|+.++.|+
T Consensus       249 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          249 HLYTLD---GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             EEEEEE---CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred             eeeeec---CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence            321111   111112333333444555556889999999876433211111       111122 2 2234778888888


Q ss_pred             CCceEEEEEecCC
Q 044903          346 NGGGIVVVDVKAA  358 (387)
Q Consensus       346 ~~~~i~v~d~~~~  358 (387)
                      .++.|.+||++++
T Consensus       326 ~Dg~v~iW~~~tG  338 (340)
T 4aow_A          326 TDNLVRVWQVTIG  338 (340)
T ss_dssp             TTSCEEEEEEEC-
T ss_pred             CCCEEEEEeCCCc
Confidence            8899999999864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.80  E-value=0.33  Score=48.91  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=71.4

Q ss_pred             EEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCC--------ceeeeEEeeCCEEEEEecCCCCCCCCC
Q 044903          143 VSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RRWCAAGYSRGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       143 ~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~  212 (387)
                      ++.++.||+....        ..++.+|..|.  .|+.-...+..        ....+.++.+++||+...         
T Consensus        67 ~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------  129 (689)
T 1yiq_A           67 IVVDGVMYTTGPF--------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------  129 (689)
T ss_dssp             EEETTEEEEECGG--------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred             EEECCEEEEEcCC--------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---------
Confidence            4578899987642        45888998877  48874433211        011234567888888642         


Q ss_pred             CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeee-----CCeEEEEECCCC--ceee
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDD  277 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~  277 (387)
                      ...+..+|..|++..  |+.-...............++.+|++|+-.+.     ...+.+||.++.  .|+.
T Consensus       130 dg~l~AlDa~TG~~~--W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          130 DGRLEAIDAKTGQRA--WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TSEEEEEETTTCCEE--EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEECCCCCEe--eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            126889999998866  88654311111011113346679999875432     257999999877  4875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.80  E-value=0.02  Score=51.64  Aligned_cols=143  Identities=8%  Similarity=0.051  Sum_probs=81.1

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeC----CeEEEE
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKG----AEGAVY  268 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~----~~i~~y  268 (387)
                      ++++|+.+..+.        .+.+||+.+++    ...+.......     ..++.+  +|++|+.+...    ..+.+|
T Consensus        55 ~g~l~~~~~~~~--------~i~~~d~~~~~----~~~~~~~~~~~-----~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           55 QGQLFLLDVFEG--------NIFKINPETKE----IKRPFVSHKAN-----PAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             TSCEEEEETTTC--------EEEEECTTTCC----EEEEEECSSSS-----EEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             CCCEEEEECCCC--------EEEEEeCCCCc----EEEEeeCCCCC-----cceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            567888765432        68899999888    76543111111     222333  67888875433    478999


Q ss_pred             ECCCCceeeccccccCCCCCcEEEE-eCCeEEEEeCC------CCeEEEEeCCCCceEEccccccccCceeEE-EeCC-e
Q 044903          269 DVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDEN------SCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGG-R  339 (387)
Q Consensus       269 D~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~-~  339 (387)
                      |++++.-..+-.....+.....+++ .+|++|+....      .+.|++||+++.+.+.+...  ......++ .-+| .
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKV  195 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSE
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCE
Confidence            9988765522110111111112222 35788887643      35799999987766654321  11122233 2344 4


Q ss_pred             EEEEecCCceEEEEEec
Q 044903          340 VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       340 l~v~gg~~~~i~v~d~~  356 (387)
                      ||+.......+++||+.
T Consensus       196 l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          196 LWVTETTANRLHRIALE  212 (333)
T ss_dssp             EEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCeEEEEEec
Confidence            77775556788888885

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.79  E-value=0.041  Score=49.41  Aligned_cols=194  Identities=10%  Similarity=0.100  Sum_probs=99.4

Q ss_pred             CEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCcee-eeEEee-C--CEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW-CAAGYS-R--GAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      +.+++.|+.+       ..+.+||..+.+|..+..+...... .+.+.. +  +.+++.|+.+.        .+.+||..
T Consensus        71 ~~~l~s~s~D-------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~--------~i~lwd~~  135 (316)
T 3bg1_A           71 GNILASCSYD-------RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG--------AISLLTYT  135 (316)
T ss_dssp             SSCEEEEETT-------SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS--------CEEEEEEC
T ss_pred             CCEEEEEECC-------CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC--------CEEEEecC
Confidence            4566666532       4578889888776543222211111 111221 2  45666666543        56777776


Q ss_pred             CC-ccccCeEEcCCCCCCcccccceeEEEE-------------------CCEEEEEeeeCCeEEEEECCC-Cceeecccc
Q 044903          223 NG-EKNSRWEKTGELKDGRFSREAIDAVGW-------------------KGKLCLVNVKGAEGAVYDVVA-NTWDDMREG  281 (387)
Q Consensus       223 t~-~~~~~W~~~~~~~~~~~~~~~~~~v~~-------------------~g~lyv~gg~~~~i~~yD~~~-~~W~~~~~~  281 (387)
                      +. .    |.....+......   ..++.+                   ++++++.|+.+..+.++|... +.|..+...
T Consensus       136 ~~~~----~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l  208 (316)
T 3bg1_A          136 GEGQ----WEVKKINNAHTIG---CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL  208 (316)
T ss_dssp             SSSC----EEECCBTTSSSSC---BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred             CCCC----cceeeeeccccCC---cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence            65 4    6543322111000   011111                   134556666667888888864 457654321


Q ss_pred             ccCCCCCcEEEEe-C----CeEEEEeCCCCeEEEEeCCC---CceEEccccccccCce-e-EEEeCCeEEEEecCCceEE
Q 044903          282 MVRGWRGPVAAMD-E----EVLYGIDENSCTLSKYDEVM---DDWKEVVKSDLLKGAR-H-AAAGGGRVCAVCENGGGIV  351 (387)
Q Consensus       282 ~~~~~~~~~~~~~-~----g~ly~~g~~~~~v~~yd~~~---~~W~~v~~~~~~~~~~-~-~~~~~~~l~v~gg~~~~i~  351 (387)
                      ......-.+++.. +    +.+++.++.++.|.+||.++   ..|.... ........ + ....++++++.++.++.+.
T Consensus       209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~g~~las~~~D~~v~  287 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL-LHKFNDVVWHVSWSITANILAVSGGDNKVT  287 (316)
T ss_dssp             BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE-EEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred             ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh-hhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence            1111001122221 2    25677777889999999876   3443211 11112222 2 2234678888888889999


Q ss_pred             EEEecCCCCCceeEE
Q 044903          352 VVDVKAAAAPTIFVV  366 (387)
Q Consensus       352 v~d~~~~~~~~~W~~  366 (387)
                      +||....   ..|..
T Consensus       288 lw~~~~~---g~~~~  299 (316)
T 3bg1_A          288 LWKESVD---GQWVC  299 (316)
T ss_dssp             EEEECTT---SCEEE
T ss_pred             EEEECCC---CcEEE
Confidence            9998733   35763

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.79  E-value=0.5  Score=47.04  Aligned_cols=182  Identities=9%  Similarity=-0.058  Sum_probs=111.8

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC--CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV--TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.||+....       ...++++++.....+.+....  .|. ..+....+++||++-..        ...++++|+.
T Consensus        47 ~~~~lywtD~~-------~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~--------~~~I~v~~~d  110 (628)
T 4a0p_A           47 TDNRIYWTDIS-------LKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTG--------TNRIEVSKLD  110 (628)
T ss_dssp             TTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred             CCCEEEEEECC-------CCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECC--------CCEEEEEecC
Confidence            46889987542       256788888766555532222  222 12222257899998443        2478999987


Q ss_pred             CCccccCeEEc--CCCCCCcccccceeEEEE--CCEEEEEe-eeCCeEEEEECCCCceeeccccccCCCCCc-EEEEe--
Q 044903          223 NGEKNSRWEKT--GELKDGRFSREAIDAVGW--KGKLCLVN-VKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD--  294 (387)
Q Consensus       223 t~~~~~~W~~~--~~~~~~~~~~~~~~~v~~--~g~lyv~g-g~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~--  294 (387)
                      ...    =+.+  ..+..|      ...++-  +|.||+.. |....|+..+++...-+.+-..+    ..+ .+++.  
T Consensus       111 G~~----~~~l~~~~l~~P------~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~----~~P~GlalD~~  176 (628)
T 4a0p_A          111 GQH----RQVLVWKDLDSP------RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV----GRANGLTIDYA  176 (628)
T ss_dssp             STT----CEEEECSSCCCE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC----SSEEEEEEETT
T ss_pred             CCc----EEEEEeCCCCCc------ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC----CCcceEEEccc
Confidence            654    2222  222222      223332  68999986 33468999988765544433211    122 23333  


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++||+.+...+.|.++|++...=+.+..  ....+++++..+++||+.-.....|.++|..++
T Consensus       177 ~~~LY~aD~~~~~I~~~d~dG~~~~v~~~--~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          177 KRRLYWTDLDTNLIESSNMLGLNREVIAD--DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEE--CCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             cCEEEEEECCCCEEEEEcCCCCceEEeec--cCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence            68999999878899999987643232221  234567888889999999777889999997644

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.77  E-value=0.19  Score=45.16  Aligned_cols=146  Identities=10%  Similarity=-0.020  Sum_probs=81.1

Q ss_pred             CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCC
Q 044903          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +.+++.|+.+.        .+.+||..+.+..   ..+....      ....++.+   ++.+++.++.+..+.+||..+
T Consensus        85 ~~~l~~~~~dg--------~i~v~d~~~~~~~---~~~~~~~------~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSRG--------IIRIINPITMQCI---KHYVGHG------NAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETTC--------EEEEECTTTCCEE---EEEESCC------SCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEecCCC--------EEEEEEchhceEe---eeecCCC------CcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            46777776543        7889998877611   1111111      11223333   567777777778899999987


Q ss_pred             Cceeeccccc-cCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEcccc--------------------------
Q 044903          273 NTWDDMREGM-VRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKS--------------------------  324 (387)
Q Consensus       273 ~~W~~~~~~~-~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~--------------------------  324 (387)
                      .+-...-... .....-.+++. .++..++.++.++.|.+||..+.+-......                          
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            6543321100 11111112222 2456667777789999999976532211000                          


Q ss_pred             ccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ........++.+.+++++.++.++.+.+||+.+.
T Consensus       228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             SSCSSCCCEEEEETTEEEEECSSSEEEEEEESST
T ss_pred             cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCc
Confidence            0022222333333778888788899999998854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.76  E-value=0.2  Score=46.31  Aligned_cols=147  Identities=10%  Similarity=0.037  Sum_probs=82.6

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEE-----cCCCCCCcccccceeEEEE--CC-EEEEEeeeCCeEE
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK-----TGELKDGRFSREAIDAVGW--KG-KLCLVNVKGAEGA  266 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~-----~~~~~~~~~~~~~~~~v~~--~g-~lyv~gg~~~~i~  266 (387)
                      ++.+++.|+.+.        .+.+||..++.    ...     +..+..   .......+.+  ++ .+++.++.+..+.
T Consensus        93 ~~~~l~s~s~dg--------~v~vw~~~~~~----~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~~l~s~~~dg~i~  157 (402)
T 2aq5_A           93 NDNVIASGSEDC--------TVMVWEIPDGG----LVLPLREPVITLEG---HTKRVGIVAWHPTAQNVLLSAGCDNVIL  157 (402)
T ss_dssp             CTTEEEEEETTS--------EEEEEECCTTC----CSSCBCSCSEEEEC---CSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred             CCCEEEEEeCCC--------eEEEEEccCCC----CccccCCceEEecC---CCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence            566777776543        68889988774    211     110100   0011222322  33 4666777778899


Q ss_pred             EEECCCCceeecc--ccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEEcccccccc--CceeEEEeCCeEE
Q 044903          267 VYDVVANTWDDMR--EGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK--GARHAAAGGGRVC  341 (387)
Q Consensus       267 ~yD~~~~~W~~~~--~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~--~~~~~~~~~~~l~  341 (387)
                      +||..+++....-  .... . .-.+++.. ++.+++.++.++.|.+||+.+.+-..........  ....+...+++++
T Consensus       158 iwd~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (402)
T 2aq5_A          158 VWDVGTGAAVLTLGPDVHP-D-TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL  235 (402)
T ss_dssp             EEETTTTEEEEEECTTTCC-S-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred             EEECCCCCccEEEecCCCC-C-ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence            9999887554221  1111 1 11223322 5667777778899999999876533322111111  1233344578888


Q ss_pred             EEe---cCCceEEEEEecCC
Q 044903          342 AVC---ENGGGIVVVDVKAA  358 (387)
Q Consensus       342 v~g---g~~~~i~v~d~~~~  358 (387)
                      +.|   ..+..+.+||..+.
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBC
T ss_pred             EEeccCCCCceEEEEcCccc
Confidence            887   56788999999854

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.75  E-value=0.00023  Score=63.01  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             CCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCC
Q 044903           42 LLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPP   81 (387)
Q Consensus        42 ~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~   81 (387)
                      .+..||+||+..||+.|+   ++++.+|||+|+.+.+++..++
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr   46 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWR   46 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHH
Confidence            456799999999999998   8888899999999999986654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.75  E-value=0.1  Score=47.92  Aligned_cols=105  Identities=6%  Similarity=-0.159  Sum_probs=60.0

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccc--ccC--CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREG--MVR--GWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~--~~~--~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~  327 (387)
                      ++...+.++....+.+||..+.+-......  ...  ...........+..++++..++.+.+||..+.+-.  ......
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~  333 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--TMLKGH  333 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--EEECCC
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--eeeccC
Confidence            566666777677899999987653322110  000  00111222222334445556789999999775432  222222


Q ss_pred             cCc--eeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          328 KGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~--~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ...  ......++++++.|+.++.+.+||+...
T Consensus       334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            222  2233446788888888899999999865

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.74  E-value=0.25  Score=49.62  Aligned_cols=197  Identities=17%  Similarity=0.177  Sum_probs=110.5

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCCc--------eeeeEEeeCCEEEEEecCCCCCCCC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR--------RWCAAGYSRGAVYVASGIGSQFSSD  211 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~  211 (387)
                      .++.++.||+....        ..++.+|..|.  .|+.-+..+...        ...+.++.+++||+...        
T Consensus        62 P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------  125 (668)
T 1kv9_A           62 PLFHDGVIYTSMSW--------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------  125 (668)
T ss_dssp             CEEETTEEEEEEGG--------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--------
T ss_pred             CEEECCEEEEECCC--------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC--------
Confidence            34578899987642        45788888877  488744332110        11234556888887532        


Q ss_pred             CCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeee-----CCeEEEEECCCC--ceeecc-cccc
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDDMR-EGMV  283 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~~~-~~~~  283 (387)
                       ...+..+|..|++..  |+.-..-+..... .....++.++++|+-.+.     ...+.+||.+++  .|+.-. ...+
T Consensus       126 -dg~l~alD~~tG~~~--W~~~~~~~~~~~~-~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p  201 (668)
T 1kv9_A          126 -DGRLIALDAKTGKAI--WSQQTTDPAKPYS-ITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP  201 (668)
T ss_dssp             -TSEEEEEETTTCCEE--EEEECSCTTSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred             -CCEEEEEECCCCCEe--eeeccCCCCCcce-ecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCC
Confidence             126899999999866  9865422111111 113345679999876432     257999999876  587532 1001


Q ss_pred             CC-------------C-------------CCcEEEE--eCCeEEEEeCCC------------------CeEEEEeCCCC-
Q 044903          284 RG-------------W-------------RGPVAAM--DEEVLYGIDENS------------------CTLSKYDEVMD-  316 (387)
Q Consensus       284 ~~-------------~-------------~~~~~~~--~~g~ly~~g~~~------------------~~v~~yd~~~~-  316 (387)
                      ..             +             ...+.++  .++.+|+-.++.                  +.|+.+|+++. 
T Consensus       202 ~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~  281 (668)
T 1kv9_A          202 ALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK  281 (668)
T ss_dssp             TSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred             CccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc
Confidence            00             0             0012233  246677654321                  24999998775 


Q ss_pred             -ceEEcccccc-----ccCceeEE--EeCCe---EEEEecCCceEEEEEecCC
Q 044903          317 -DWKEVVKSDL-----LKGARHAA--AGGGR---VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       317 -~W~~v~~~~~-----~~~~~~~~--~~~~~---l~v~gg~~~~i~v~d~~~~  358 (387)
                       .|+.-.....     ......++  ..+|+   +++++..++.++++|..++
T Consensus       282 ~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC
Confidence             5765332111     01112222  24665   5666667788999998754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.74  E-value=0.4  Score=45.31  Aligned_cols=194  Identities=11%  Similarity=-0.004  Sum_probs=98.4

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCC----ceeeCCC---C----CCCceeeeEEeeCCEEEEEecCCCCCCCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICR----TWTFGPE---L----VTPRRWCAAGYSRGAVYVASGIGSQFSSDVAK  214 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~----~W~~l~~---~----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  214 (387)
                      ...+|+-|..       .+.++++|..++    +-.+.-.   +    ...+.+...+.-++ |||....+.  .++...
T Consensus        95 r~~l~v~~l~-------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~--~g~~~g  164 (462)
T 2ece_A           95 RRFLIVPGLR-------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE--EGEGPG  164 (462)
T ss_dssp             SCEEEEEBTT-------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET--TSCSCC
T ss_pred             CCEEEEccCC-------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc--CCCCCC
Confidence            4456665542       368999998877    2222110   1    11122333344455 877532221  234457


Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeE-EEECCEEEEEee-------------------eCCeEEEEECCCCc
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDA-VGWKGKLCLVNV-------------------KGAEGAVYDVVANT  274 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~-v~~~g~lyv~gg-------------------~~~~i~~yD~~~~~  274 (387)
                      .+.++|.+|.+..-+|.. ...+.. +.   ... ..-++++++...                   ++..+.+||..+. 
T Consensus       165 ~v~vlD~~T~~v~~~~~~-~~~~~~-~~---Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-  238 (462)
T 2ece_A          165 GILMLDHYSFEPLGKWEI-DRGDQY-LA---YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-  238 (462)
T ss_dssp             EEEEECTTTCCEEEECCS-BCTTCC-CC---CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-
T ss_pred             eEEEEECCCCeEEEEEcc-CCCCcc-cc---ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-
Confidence            899999998773222331 111111 00   101 122344444432                   2478999999875 


Q ss_pred             eeeccccccCCC--CCcE-EEE----eCCeEEEEeC-----CCCeEEEEeCCCCceEEcccc--cc--------------
Q 044903          275 WDDMREGMVRGW--RGPV-AAM----DEEVLYGIDE-----NSCTLSKYDEVMDDWKEVVKS--DL--------------  326 (387)
Q Consensus       275 W~~~~~~~~~~~--~~~~-~~~----~~g~ly~~g~-----~~~~v~~yd~~~~~W~~v~~~--~~--------------  326 (387)
                       +.+.. +..+.  ..+. +..    .+..+|+...     .++.|++|..+..+|+.+...  +.              
T Consensus       239 -k~~~t-I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f  316 (462)
T 2ece_A          239 -KRIHS-LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF  316 (462)
T ss_dssp             -EEEEE-EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred             -cEeeE-EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence             22221 11110  0111 111    1456888876     677877766556778765521  11              


Q ss_pred             ---ccCcee-EEEeC-CeEEEEecCCceEEEEEecC
Q 044903          327 ---LKGARH-AAAGG-GRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       327 ---~~~~~~-~~~~~-~~l~v~gg~~~~i~v~d~~~  357 (387)
                         ...... ....+ ..|||-..+.+.|.+||+..
T Consensus       317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence               011122 22334 46888877788999999973

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.25  Score=46.56  Aligned_cols=134  Identities=8%  Similarity=-0.122  Sum_probs=71.5

Q ss_pred             CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEc--CCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC
Q 044903          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT--GELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~--~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      +++++.|+.+.        .+.+||..+.+    -...  .......    .+.+.. ++++++.++....+.+||..+.
T Consensus       210 ~~~l~s~~~d~--------~i~vwd~~~~~----~~~~~~~~h~~~v----~~~~~s-d~~~l~s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          210 HQFIITSDRDE--------HIKISHYPQCF----IVDKWLFGHKHFV----SSICCG-KDYLLLSAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             CEEEEEEETTS--------CEEEEEESCTT----CEEEECCCCSSCE----EEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred             CcEEEEEcCCC--------cEEEEECCCCc----eeeeeecCCCCce----EEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence            66777776543        68889988776    3322  1111110    122222 7777777777789999999877


Q ss_pred             ceeec-ccc-----c-----------------cCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeC--C-CCceEEccccc
Q 044903          274 TWDDM-REG-----M-----------------VRGWRGPVAAMD--EEVLYGIDENSCTLSKYDE--V-MDDWKEVVKSD  325 (387)
Q Consensus       274 ~W~~~-~~~-----~-----------------~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~--~-~~~W~~v~~~~  325 (387)
                      +-... ...     +                 ........++..  +..|++....++.|.+||.  . ...++.+....
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~  352 (450)
T 2vdu_B          273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT  352 (450)
T ss_dssp             CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec
Confidence            53221 100     0                 000001112221  3344444446789999998  3 34556655444


Q ss_pred             cccCceeEEEeCCeEEEEecC
Q 044903          326 LLKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       326 ~~~~~~~~~~~~~~l~v~gg~  346 (387)
                      .......++...+.+++..+.
T Consensus       353 ~~~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          353 FPYNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             CSSCEEEEEEETTEEEEEECC
T ss_pred             cCCceEEEEecCCcEEEEEec
Confidence            333334455556777777554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.73  E-value=0.0073  Score=55.52  Aligned_cols=147  Identities=12%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++++.|+.+.        .+.+||..++.    |..+..+....   .....+.+  ++.+.+.++.+..+.+||..+
T Consensus        22 ~g~~l~~~~~d~--------~i~iw~~~~~~----~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTATN--------QVELYEQDGNG----WKHARTFSDHD---KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSSS--------CBCEEEEETTE----EEECCCBCCCS---SCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             CCCEEEEecCCC--------EEEEEEccCCc----eEEEEEEecCC---ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            455556555433        67888988887    87776554221   11223333  567777777677899999988


Q ss_pred             Cc-eeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCc-eEEcccccc-ccCceeEE--EeCCeEEEEecC
Q 044903          273 NT-WDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDD-WKEVVKSDL-LKGARHAA--AGGGRVCAVCEN  346 (387)
Q Consensus       273 ~~-W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~-W~~v~~~~~-~~~~~~~~--~~~~~l~v~gg~  346 (387)
                      +. |............-.+++. .++++++.++.++.|.+||.++.. |..+..... .......+  ..++++++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            76 5543321111111112222 245666777778899999998764 544443332 33332222  236788888888


Q ss_pred             CceEEEEEec
Q 044903          347 GGGIVVVDVK  356 (387)
Q Consensus       347 ~~~i~v~d~~  356 (387)
                      ++.+.+||+.
T Consensus       167 d~~i~iwd~~  176 (377)
T 3dwl_C          167 DRKAYVLSAY  176 (377)
T ss_dssp             SSCEEEEEEC
T ss_pred             CCEEEEEEEE
Confidence            8899999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.71  E-value=0.075  Score=47.64  Aligned_cols=185  Identities=10%  Similarity=-0.014  Sum_probs=96.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCc----eeeCCCCCCCceeeeEEeeCCE-EEEEecCCCCCCCCCCceEEEEe
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRT----WTFGPELVTPRRWCAAGYSRGA-VYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~----W~~l~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~vyd  220 (387)
                      ++.+++.|+.+       ..+.+||..+..    -..+.....+ ....+..-+++ .++.|+.+.        .+.+||
T Consensus        22 ~~~~l~~~~~d-------~~v~iw~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--------~i~~wd   85 (342)
T 1yfq_A           22 SKSLLLITSWD-------GSLTVYKFDIQAKNVDLLQSLRYKHP-LLCCNFIDNTDLQIYVGTVQG--------EILKVD   85 (342)
T ss_dssp             GGTEEEEEETT-------SEEEEEEEETTTTEEEEEEEEECSSC-EEEEEEEESSSEEEEEEETTS--------CEEEEC
T ss_pred             CCCEEEEEcCC-------CeEEEEEeCCCCccccceeeeecCCc-eEEEEECCCCCcEEEEEcCCC--------eEEEEE
Confidence            44555555532       456777776665    2222211111 11112222566 666666533        688999


Q ss_pred             C-CCCccccCeEEcCC--CCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc-------eeeccccccCCCCCcE
Q 044903          221 L-MNGEKNSRWEKTGE--LKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT-------WDDMREGMVRGWRGPV  290 (387)
Q Consensus       221 ~-~t~~~~~~W~~~~~--~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~-------W~~~~~~~~~~~~~~~  290 (387)
                      . .+.+    -..+..  .....     ...+...+.+++.++....+.+||..+..       .+.+.. +.....-.+
T Consensus        86 ~~~~~~----~~~~~~~~~~~~v-----~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~  155 (342)
T 1yfq_A           86 LIGSPS----FQALTNNEANLGI-----CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-TKVKNKIFT  155 (342)
T ss_dssp             SSSSSS----EEECBSCCCCSCE-----EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-SSSCCCEEE
T ss_pred             eccCCc----eEeccccCCCCce-----EEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeE-EeeCCceEE
Confidence            9 8887    655543  22111     22222325555666666788999876400       111111 111111223


Q ss_pred             EEEeCCeEEEEeCCCCeEEEEeCCC-Cc--eEEccccccccCceeEEE-e-CCeEEEEecCCceEEEEEecCC
Q 044903          291 AAMDEEVLYGIDENSCTLSKYDEVM-DD--WKEVVKSDLLKGARHAAA-G-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~g~ly~~g~~~~~v~~yd~~~-~~--W~~v~~~~~~~~~~~~~~-~-~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++...+. ++.+..++.|.+||..+ ..  ...... +......++.. . +++.+++|+.++.+.+||....
T Consensus       156 ~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          156 MDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             EEecCCc-EEEEeCCCeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            4444555 55666788999999987 32  222211 11111122232 2 5788888888889999888743

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.28  Score=44.11  Aligned_cols=183  Identities=10%  Similarity=0.097  Sum_probs=92.6

Q ss_pred             CccEEEeCCCCceeeCCCCC---CCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccc-cCeEEcCCCCC
Q 044903          164 TRPLIFDPICRTWTFGPELV---TPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN-SRWEKTGELKD  238 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~---~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~-~~W~~~~~~~~  238 (387)
                      ..+.+||..++....+..+.   ....-.+.+. -++++++.|+.+.        .+.+||....... +.+..+..+..
T Consensus        34 ~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~--------~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           34 RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS--------TVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS--------CEEEEEC-------CCCEEEEEEC-
T ss_pred             CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC--------cEEEEEcccCcCccccceeEEEEcC
Confidence            45778888776544332221   1111111221 2456677776543        5777776432100 00322221110


Q ss_pred             CcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC--CceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeC
Q 044903          239 GRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA--NTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDE  313 (387)
Q Consensus       239 ~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~--~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~  313 (387)
                      .   ......+.+  +|++.+.++.+..+.++|...  ..++.+.........-.+++. .++.+++.++.++.|.+||.
T Consensus       106 h---~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~  182 (330)
T 2hes_X          106 H---ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD  182 (330)
T ss_dssp             ------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEE
T ss_pred             C---CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            0   011222333  567767777778899999843  344433211011100112222 25667777778899999999


Q ss_pred             CCCceEEccccccccCceeEEEe--C--CeEEEEecCCceEEEEEecC
Q 044903          314 VMDDWKEVVKSDLLKGARHAAAG--G--GRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       314 ~~~~W~~v~~~~~~~~~~~~~~~--~--~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .+..|+.+............+..  +  +..++.|+.+..+.+||+..
T Consensus       183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            88888776655444443322222  2  45666777788888888763

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.016  Score=59.18  Aligned_cols=149  Identities=8%  Similarity=0.054  Sum_probs=86.9

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--C--CEEEEEeeeCCeEEEEEC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~--g~lyv~gg~~~~i~~yD~  270 (387)
                      +++.++.|+.+.        .+.+||..+++    +..+..+....   ....++.+  +  +.+.+.|+.+..+.+||.
T Consensus        20 dg~~latg~~dg--------~I~vwd~~~~~----~~~~~~l~~h~---~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSDK--------TIKIFEVEGET----HKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETTT--------EEEEEEEETTE----EEEEEEECCCS---SCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCC--------cEEEEecCCCC----CccceeccCCc---CceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            345555665433        67888887666    66554433211   11333333  3  667777777788999999


Q ss_pred             CCCceeeccccccCCCCCcEEEEe-C--CeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe-----------
Q 044903          271 VANTWDDMREGMVRGWRGPVAAMD-E--EVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG-----------  336 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~~~~~~~~-~--g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~-----------  336 (387)
                      .++.|..+.........-.+++.. +  +.+++.++.++.|.+||..+..-...............+..           
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~  164 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence            998876655322111112233332 2  66778888889999999977632221111112222222221           


Q ss_pred             ----CCeEEEEecCCceEEEEEecCC
Q 044903          337 ----GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       337 ----~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                          ++..++.|+.++.|.+||....
T Consensus       165 ~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          165 NGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             --CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             ccCCCCCEEEEEECCCeEEEEeccCC
Confidence                3678888888888999998743

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.66  E-value=0.28  Score=45.14  Aligned_cols=178  Identities=8%  Similarity=0.036  Sum_probs=96.9

Q ss_pred             CccEEEeCCCCceeeC--CCCCCCce-eeeEE---eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC
Q 044903          164 TRPLIFDPICRTWTFG--PELVTPRR-WCAAG---YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l--~~~~~~r~-~~~~~---~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~  237 (387)
                      ..+.+||..+.+-...  ...+.... .....   ..++.+++.|+.+.        .+.+||.......  -..+..-.
T Consensus       180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--------~v~~wd~~~~~~~--~~~~~~h~  249 (380)
T 3iz6_a          180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--------TVRLWDLRITSRA--VRTYHGHE  249 (380)
T ss_dssp             SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--------CEEEEETTTTCCC--CEEECCCS
T ss_pred             CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC--------eEEEEECCCCCcc--eEEECCcC
Confidence            3567888887765432  11111111 11111   22567888887654        6788888643200  22222111


Q ss_pred             CCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeec-cccc---cCCC-CCcEEE-EeCCeEEEEeCCCCeEE
Q 044903          238 DGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDM-REGM---VRGW-RGPVAA-MDEEVLYGIDENSCTLS  309 (387)
Q Consensus       238 ~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~~---~~~~-~~~~~~-~~~g~ly~~g~~~~~v~  309 (387)
                      ..      ..++.+  +|..++.|+.+..+.+||+.++.-... ....   .... .-.+++ ..+|++.+.+..++.|.
T Consensus       250 ~~------v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  323 (380)
T 3iz6_a          250 GD------INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY  323 (380)
T ss_dssp             SC------CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred             CC------eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence            11      112222  567777777778899999987643221 1100   0000 012333 33677777888889999


Q ss_pred             EEeCCCCceEE-cccc-ccccCc--eeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          310 KYDEVMDDWKE-VVKS-DLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       310 ~yd~~~~~W~~-v~~~-~~~~~~--~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      +||..+.+-.. +... ..+...  ......+|+.++.|+.++.+.+||+..
T Consensus       324 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          324 VWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             EEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            99987664332 2111 112222  233345788888888899999999884

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.65  E-value=0.081  Score=46.92  Aligned_cols=147  Identities=7%  Similarity=0.048  Sum_probs=79.4

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE----CCEEEEEeeeCCeEEEEEC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW----KGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~----~g~lyv~gg~~~~i~~yD~  270 (387)
                      +++.++.|+.+.        .+.+||..++.    .+.+..+...   ......+.+    +|.+.+.++.+..+.++|.
T Consensus        20 ~g~~las~s~D~--------~v~iw~~~~~~----~~~~~~l~gH---~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B           20 YGKRMATCSSDK--------TIKIFEVEGET----HKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             TSSEEEEEETTS--------CEEEEEBCSSC----BCCCEEECCC---SSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             CCCEEEEEeCCC--------EEEEEecCCCC----cEEEEEEccc---cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            456666776543        67888876544    3222211110   011223333    2667777777789999999


Q ss_pred             CCCceeeccccccCCCCCcEEEEeC---CeEEEEeCCCCeEEEEeCCCCc-eEEccccccccCceeEEEe----------
Q 044903          271 VANTWDDMREGMVRGWRGPVAAMDE---EVLYGIDENSCTLSKYDEVMDD-WKEVVKSDLLKGARHAAAG----------  336 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~~~~~~~~~---g~ly~~g~~~~~v~~yd~~~~~-W~~v~~~~~~~~~~~~~~~----------  336 (387)
                      .++.|..+.........-.+++...   +.+++.++.++.|.+||..+.. +... ...........+.+          
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-EEECCSSCEEEEEECCCC------
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-eeecccCccceEeecCCccccccc
Confidence            9888865542111111111233221   5677777788999999987652 3211 11111111111111          


Q ss_pred             -----CCeEEEEecCCceEEEEEecC
Q 044903          337 -----GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       337 -----~~~l~v~gg~~~~i~v~d~~~  357 (387)
                           ++++++.|+.++.+.+||...
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~  189 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNS  189 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEET
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcC
Confidence                 246778877888899998874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.65  E-value=0.087  Score=48.85  Aligned_cols=143  Identities=10%  Similarity=0.092  Sum_probs=81.9

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +++.++.|+.+.        .+.+||..+.+    -...-.-...     ...++.+  ++...+.++.+..+.+||..+
T Consensus       134 dg~~l~s~~~d~--------~i~iwd~~~~~----~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          134 DGKFLATGAEDR--------LIRIWDIENRK----IVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             TSSEEEEEETTS--------CEEEEETTTTE----EEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEEcCCC--------eEEEEECCCCc----EEEEEccCCC-----CEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence            566777776543        68899988776    3322111111     1222222  566666666668899999987


Q ss_pred             CceeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcccc-----ccccCce-eE-EEeCCeEEEE
Q 044903          273 NTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS-----DLLKGAR-HA-AAGGGRVCAV  343 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-----~~~~~~~-~~-~~~~~~l~v~  343 (387)
                      .+....-. ....  ..+++..  ++++++.++.++.|.+||..+..-......     ....... ++ ...+++.++.
T Consensus       197 ~~~~~~~~-~~~~--v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          197 GQCSLTLS-IEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             TEEEEEEE-CSSC--EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             CeeEEEEE-cCCC--cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence            75432211 1111  1223332  567888888889999999987754332111     1112222 22 2336788888


Q ss_pred             ecCCceEEEEEecC
Q 044903          344 CENGGGIVVVDVKA  357 (387)
Q Consensus       344 gg~~~~i~v~d~~~  357 (387)
                      |+.++.+.+||+..
T Consensus       274 ~s~d~~v~~wd~~~  287 (393)
T 1erj_A          274 GSLDRSVKLWNLQN  287 (393)
T ss_dssp             EETTSEEEEEEC--
T ss_pred             EeCCCEEEEEECCC
Confidence            88889999999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.65  E-value=0.093  Score=47.08  Aligned_cols=152  Identities=11%  Similarity=-0.029  Sum_probs=74.0

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCC-EEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRG-AVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++.+|+.++.       ...++++|+.+++....-+.+........+. -++ .+|+.+...        ..+.+||+.+
T Consensus        10 ~~~~~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--------~~i~~~d~~t   74 (349)
T 1jmx_B           10 GHEYMIVTNY-------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY--------GDIYGIDLDT   74 (349)
T ss_dssp             TCEEEEEEET-------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT--------TEEEEEETTT
T ss_pred             CCEEEEEeCC-------CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC--------CcEEEEeCCC
Confidence            5677777653       2578999999887654222222001112222 233 577776432        2689999988


Q ss_pred             CccccCeEEcCCCCCCc--ccccceeEEE-ECC-EEEEEeee-----------CCeEEEEECCCCceeeccccccCCCCC
Q 044903          224 GEKNSRWEKTGELKDGR--FSREAIDAVG-WKG-KLCLVNVK-----------GAEGAVYDVVANTWDDMREGMVRGWRG  288 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~--~~~~~~~~v~-~~g-~lyv~gg~-----------~~~i~~yD~~~~~W~~~~~~~~~~~~~  288 (387)
                      .+    -...-..+...  ........+. -+| .+|+.+..           ...+.+||+.+++-...-.........
T Consensus        75 ~~----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (349)
T 1jmx_B           75 CK----NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  150 (349)
T ss_dssp             TE----EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             Cc----EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc
Confidence            77    43222221100  0000011222 245 46665532           268999998774321111001111111


Q ss_pred             cEEE-EeCCeEEEEeCCCCeEEEEeCCCCceE
Q 044903          289 PVAA-MDEEVLYGIDENSCTLSKYDEVMDDWK  319 (387)
Q Consensus       289 ~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~  319 (387)
                      .+++ ..+|++|+.+   +.+++||+++.+-.
T Consensus       151 ~~~~~s~dg~l~~~~---~~i~~~d~~~~~~~  179 (349)
T 1jmx_B          151 YLMRAADDGSLYVAG---PDIYKMDVKTGKYT  179 (349)
T ss_dssp             CCEEECTTSCEEEES---SSEEEECTTTCCEE
T ss_pred             cceeECCCCcEEEcc---CcEEEEeCCCCcee
Confidence            2222 2356677753   34888888776543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.65  E-value=0.068  Score=47.52  Aligned_cols=177  Identities=10%  Similarity=0.030  Sum_probs=90.4

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCC----CceeeeEEeeCCEEEEEecCCCCC---CCCCCceEE
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT----PRRWCAAGYSRGAVYVASGIGSQF---SSDVAKSVE  217 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~----~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~v~  217 (387)
                      -++.+|+...         ..+++||+.+++++.+.....    .+....++.-++++|+........   .......++
T Consensus        63 ~dG~l~v~~~---------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~  133 (297)
T 3g4e_A           63 QSGGYVATIG---------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALY  133 (297)
T ss_dssp             TTSSEEEEET---------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEE
T ss_pred             CCCCEEEEEC---------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEE
Confidence            3566666431         468999999998877644321    122222233367888753221100   001223677


Q ss_pred             EEeCCCCccccCeEEcC-CCCCCcccccceeEEEE--CC-EEEEEeeeCCeEEEEEC--CCCcee------eccccccCC
Q 044903          218 KWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGW--KG-KLCLVNVKGAEGAVYDV--VANTWD------DMREGMVRG  285 (387)
Q Consensus       218 vyd~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~--~g-~lyv~gg~~~~i~~yD~--~~~~W~------~~~~~~~~~  285 (387)
                      .+|+.. +    -..+. .+..       .....+  +| .+|+.......+.+||.  .+....      .+...  .+
T Consensus       134 ~~d~~g-~----~~~~~~~~~~-------pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~--~~  199 (297)
T 3g4e_A          134 SLFPDH-H----VKKYFDQVDI-------SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE--EQ  199 (297)
T ss_dssp             EECTTS-C----EEEEEEEESB-------EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG--GC
T ss_pred             EEECCC-C----EEEEeecccc-------ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC--CC
Confidence            777753 3    33321 1110       112233  45 58888665578889876  444432      22110  01


Q ss_pred             CCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe---CCeEEEEecC
Q 044903          286 WRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG---GGRVCAVCEN  346 (387)
Q Consensus       286 ~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~---~~~l~v~gg~  346 (387)
                      . ...+++ .+|+||+.....+.|.+||+++.+.......|... ..+++..   ++.|||....
T Consensus       200 ~-p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~-~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          200 I-PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK-TTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             E-EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB-EEEEEEESGGGCEEEEEEBC
T ss_pred             C-CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC-ceEEEEeCCCCCEEEEEcCC
Confidence            1 112333 35789988766678999999976554433333222 2222222   2478887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.63  E-value=0.043  Score=49.15  Aligned_cols=180  Identities=16%  Similarity=0.092  Sum_probs=87.1

Q ss_pred             CccEEEeCC--CCceeeCCCCCCCceeeeEEe-eCC-EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          164 TRPLIFDPI--CRTWTFGPELVTPRRWCAAGY-SRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vydp~--t~~W~~l~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      ..+.+|+..  +.+++.+..++........+. -++ .+|+.+..+        ..+.+||...+. .  ...+......
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~i~~~d~~~~~-~--~~~~~~~~~~  128 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA--------GNVSVTRLEDGL-P--VGVVDVVEGL  128 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT--------TEEEEEEEETTE-E--EEEEEEECCC
T ss_pred             CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC--------CeEEEEECCCCc-c--ccccccccCC
Confidence            456676665  777776543332211112222 233 466665322        257888874221 0  2222211111


Q ss_pred             cccccceeEEEECC-EEEEEeeeCCeEEEEECCC-Cceeecc--c-cccCCCCCcEEEE-eCC-eEEEEeCCCCeEEEEe
Q 044903          240 RFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVA-NTWDDMR--E-GMVRGWRGPVAAM-DEE-VLYGIDENSCTLSKYD  312 (387)
Q Consensus       240 ~~~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~-~~W~~~~--~-~~~~~~~~~~~~~-~~g-~ly~~g~~~~~v~~yd  312 (387)
                      ...  ...+..-+| .+|+.+.....+.+||+.+ ++...+.  . ....+.....++. .++ .+|+.+..++.+.+||
T Consensus       129 ~~~--~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~  206 (343)
T 1ri6_A          129 DGC--HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  206 (343)
T ss_dssp             TTB--CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCc--eEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            110  011222244 5666653456899999987 6665332  1 0111111112222 234 5888876788999999


Q ss_pred             CC--CCceEEccc---cccc-c---CceeEE-EeCC-eEEEEecCCceEEEEEec
Q 044903          313 EV--MDDWKEVVK---SDLL-K---GARHAA-AGGG-RVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       313 ~~--~~~W~~v~~---~~~~-~---~~~~~~-~~~~-~l~v~gg~~~~i~v~d~~  356 (387)
                      .+  +.+++.+..   .+.. .   ....++ .-+| .||+.+..++.+.+||+.
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            84  455543322   2221 1   111222 2344 566666567889999987

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.59  E-value=0.28  Score=44.07  Aligned_cols=184  Identities=10%  Similarity=0.011  Sum_probs=96.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEE---eeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAG---YSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      ++..++.|+.+       ..+.+||..+.+...+.....+  -.+.+   .-++++++.|+.+.        .+.+||..
T Consensus        97 ~~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg--------~i~vwd~~  159 (368)
T 3mmy_A           97 DGSKVFTASCD-------KTAKMWDLSSNQAIQIAQHDAP--VKTIHWIKAPNYSCVMTGSWDK--------TLKFWDTR  159 (368)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTTEEEEEEECSSC--EEEEEEEECSSCEEEEEEETTS--------EEEEECSS
T ss_pred             CCCEEEEEcCC-------CcEEEEEcCCCCceeeccccCc--eEEEEEEeCCCCCEEEEccCCC--------cEEEEECC
Confidence            55566665532       4678899988876553322111  11222   23566777776543        68899988


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEE-eCC---
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAM-DEE---  296 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~-~~g---  296 (387)
                      +.+.    ...-..+..     .......... .+++.....+.+||....  .+..+.......  ....+. .+.   
T Consensus       160 ~~~~----~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  227 (368)
T 3mmy_A          160 SSNP----MMVLQLPER-----CYCADVIYPM-AVVATAERGLIVYQLENQPSEFRRIESPLKHQ--HRCVAIFKDKQNK  227 (368)
T ss_dssp             CSSC----SEEEECSSC-----EEEEEEETTE-EEEEEGGGCEEEEECSSSCEEEEECCCSCSSC--EEEEEEEECTTSC
T ss_pred             CCcE----EEEEecCCC-----ceEEEecCCe-eEEEeCCCcEEEEEeccccchhhhccccccCC--CceEEEcccCCCC
Confidence            7762    111111111     1223333444 344444568889998765  344433211111  112221 111   


Q ss_pred             -eEEEEeCCCCeEEEEeCCCCce-EEcccccccc------------Cce-eE-EEeCCeEEEEecCCceEEEEEecCC
Q 044903          297 -VLYGIDENSCTLSKYDEVMDDW-KEVVKSDLLK------------GAR-HA-AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 -~ly~~g~~~~~v~~yd~~~~~W-~~v~~~~~~~------------~~~-~~-~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                       ..++.++.++.+.+||.....- ..+.......            ... ++ ...++++++.|+.++.+.+||+.+.
T Consensus       228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence             2366667789999999976521 1111111110            012 22 2336778888888899999999854

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.58  E-value=0.062  Score=48.90  Aligned_cols=149  Identities=9%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++++.||.+.        .+.+||..++.    |.....+....  ......+.+  +|++.+.|+.+..+.++|..+
T Consensus        27 ~g~~las~~~D~--------~i~iw~~~~~~----~~~~~~~~~~h--~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR--------RIRIWGTEGDS----WICKSVLSEGH--QRTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS--------CEEEEEEETTE----EEEEEEECSSC--SSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             CCCEEEEEcCCC--------eEEEEEcCCCc----ceeeeeecccc--CCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence            456666666543        67888888877    75332111110  011223333  577777777777888999887


Q ss_pred             CceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCC-ceEEccccccccCceeEE--EeCCeEEEEecCCc
Q 044903          273 NTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMD-DWKEVVKSDLLKGARHAA--AGGGRVCAVCENGG  348 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~-~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~  348 (387)
                      +.++.+.........-.+++. .++++++.++.++.|.+||..+. .+..+............+  ..++++++.|+.++
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  172 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD  172 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence            766543321111101112222 25677777778899999998764 344333332222222222  23567777777777


Q ss_pred             eEEEEEecC
Q 044903          349 GIVVVDVKA  357 (387)
Q Consensus       349 ~i~v~d~~~  357 (387)
                      .+.+||...
T Consensus       173 ~i~~w~~~~  181 (345)
T 3fm0_A          173 TVKLYREEE  181 (345)
T ss_dssp             CEEEEEEET
T ss_pred             cEEEEEecC
Confidence            777777764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.57  E-value=0.15  Score=45.23  Aligned_cols=186  Identities=12%  Similarity=0.066  Sum_probs=100.4

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.+|+....       ...+++||+.+++.+.... + ......+..-++++|+..+          ..+.+||+.+++
T Consensus        24 ~~~l~~~d~~-------~~~i~~~d~~~~~~~~~~~-~-~~~~~i~~~~dG~l~v~~~----------~~l~~~d~~~g~   84 (297)
T 3g4e_A           24 SNSLLFVDIP-------AKKVCRWDSFTKQVQRVTM-D-APVSSVALRQSGGYVATIG----------TKFCALNWKEQS   84 (297)
T ss_dssp             TTEEEEEETT-------TTEEEEEETTTCCEEEEEC-S-SCEEEEEEBTTSSEEEEET----------TEEEEEETTTTE
T ss_pred             CCEEEEEECC-------CCEEEEEECCCCcEEEEeC-C-CceEEEEECCCCCEEEEEC----------CeEEEEECCCCc
Confidence            4678887642       2578999999886644321 1 1112222223567776531          267899999988


Q ss_pred             cccCeEEcCCCCCCc-ccccceeEEEECCEEEEEeeeC-----------CeEEEEECCCCceeeccccccCCCCCcEEEE
Q 044903          226 KNSRWEKTGELKDGR-FSREAIDAVGWKGKLCLVNVKG-----------AEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~-~~~~~~~~v~~~g~lyv~gg~~-----------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                          ++.+....... ..+-...++.-+|++|+-....           ..++.+|+.. +-..+......   ...++.
T Consensus        85 ----~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~---pngi~~  156 (297)
T 3g4e_A           85 ----AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDI---SNGLDW  156 (297)
T ss_dssp             ----EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESB---EEEEEE
T ss_pred             ----EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccc---ccceEE
Confidence                77665432211 1111111222368888754211           3577777653 33332221111   112333


Q ss_pred             e--CCeEEEEeCCCCeEEEEeC--CCCceEE---cccccc-ccCceeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903          294 D--EEVLYGIDENSCTLSKYDE--VMDDWKE---VVKSDL-LKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~--~g~ly~~g~~~~~v~~yd~--~~~~W~~---v~~~~~-~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .  +..||+.+...+.|++||.  ++.....   +...+. ......++ .-+|.|||....++.|.+||+.++
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            2  3469998876788999976  4444322   111111 11123333 347899998777788999998744

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.045  Score=50.64  Aligned_cols=105  Identities=6%  Similarity=-0.077  Sum_probs=60.0

Q ss_pred             CEEEEEeeeCCeEEEEECCCCceeecccccc--C--CCCCcEEEEe--CCeEEEEeCCCC---eEEEEeCCCCceEEccc
Q 044903          253 GKLCLVNVKGAEGAVYDVVANTWDDMREGMV--R--GWRGPVAAMD--EEVLYGIDENSC---TLSKYDEVMDDWKEVVK  323 (387)
Q Consensus       253 g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~--~--~~~~~~~~~~--~g~ly~~g~~~~---~v~~yd~~~~~W~~v~~  323 (387)
                      +.+++.++....+.+||..+.+-...-....  .  ...-.+++..  ++.+++.+..++   .|.+||..+..- .+..
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~  256 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQT  256 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBC
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEE
Confidence            4677776767789999998765432211110  0  1111223332  235777776676   899999987421 1112


Q ss_pred             cc-cccCce-eEEE-e-CCeEEEEecCCceEEEEEecCC
Q 044903          324 SD-LLKGAR-HAAA-G-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       324 ~~-~~~~~~-~~~~-~-~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .. ...... .+.. . ++++++.++.++.+.+||+.+.
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            22 122222 2222 2 6788888888888999998754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.54  E-value=0.45  Score=47.28  Aligned_cols=184  Identities=12%  Similarity=-0.053  Sum_probs=108.7

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCce-eeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++.||+.-.       ....++++++.....+.+..-..... ..+....+++||+.-..        ...+++.++...
T Consensus       360 ~~~ly~sD~-------~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~--------~~~I~v~~~~G~  424 (619)
T 3s94_A          360 EGYIYWTDD-------EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTG--------TDRIEVTRLNGT  424 (619)
T ss_dssp             TTEEEEEET-------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT--------TTEEEEEETTSC
T ss_pred             CCeEEEEeC-------CCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCC--------CCcEEEEeCCCC
Confidence            578888743       23567888887766555432221111 12222247899998432        247888888766


Q ss_pred             ccccCeEEcC--CCCCCcccccceeEEEE--CCEEEEEee-eCCeEEEEECCCCceeeccccccCCCCCc-EEEEe--CC
Q 044903          225 EKNSRWEKTG--ELKDGRFSREAIDAVGW--KGKLCLVNV-KGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD--EE  296 (387)
Q Consensus       225 ~~~~~W~~~~--~~~~~~~~~~~~~~v~~--~g~lyv~gg-~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~--~g  296 (387)
                      .    -+.+.  .+..|      ...++.  +|.||+..- ....|+..+++-..=+.+..   .....+ .+++.  ++
T Consensus       425 ~----~~~l~~~~l~~P------~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~---~~l~~P~GlalD~~~~  491 (619)
T 3s94_A          425 M----RKILISEDLEEP------RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN---TSLGWPNGLALDYDEG  491 (619)
T ss_dssp             S----CEEEECTTCCSE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEEETTTT
T ss_pred             e----EEEEEECCCCCe------eeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe---CCCCCCeeeEEcccCC
Confidence            4    33332  22222      222332  589999852 23678888875332222211   111122 23333  68


Q ss_pred             eEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          297 VLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +||+.+...+.|.++|++...=+.+.. .....+++++..++.||+.-.....|+..|..++
T Consensus       492 ~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          492 KIYWGDAKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEEEEETTTTEEEEEESSSCCCEEEEE-CCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC
T ss_pred             EEEEEECCCCEEEEEecCCCceEEEec-cCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC
Confidence            999999878899999987654333322 2234467788899999999666788999988854

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.54  E-value=0.24  Score=50.57  Aligned_cols=212  Identities=11%  Similarity=0.077  Sum_probs=115.9

Q ss_pred             EEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEe-CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC
Q 044903          101 HLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFG  179 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l  179 (387)
                      -++.||+.++++..+..... + .            ..-.+.+.. ++.||+...         .-+++||+.+++|+..
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~-~-~------------~~v~~i~~d~~g~lwigt~---------~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKN-E-L------------LDVRVFYEDKNKKIWIGTH---------AGVFVIDLASKKVIHH  484 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTT-C-C------------CCEEEEEECTTSEEEEEET---------TEEEEEESSSSSCCEE
T ss_pred             CEEEEcCCCCcEEEeccCCC-C-C------------CeEEEEEECCCCCEEEEEC---------CceEEEeCCCCeEEec
Confidence            36677887777766643210 0 0            001223332 466666432         3578999999988765


Q ss_pred             CCCC-----CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--C
Q 044903          180 PELV-----TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--K  252 (387)
Q Consensus       180 ~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~  252 (387)
                      ....     ..........-++.|++... +.        -+..||+.+++    +...... .. .......++..  +
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~~--------Gl~~~~~~~~~----~~~~~~~-~~-l~~~~i~~i~~d~~  549 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIGTF-GG--------GVGIYTPDMQL----VRKFNQY-EG-FCSNTINQIYRSSK  549 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEEES-SS--------CEEEECTTCCE----EEEECTT-TT-CSCSCEEEEEECTT
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEEEc-CC--------CEEEEeCCCCe----EEEccCC-CC-CCCCeeEEEEECCC
Confidence            3222     11222222223567877532 11        36779998888    8776531 11 11111223333  5


Q ss_pred             CEEEEEeeeCCeE-EEEECCCCceeecc--ccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          253 GKLCLVNVKGAEG-AVYDVVANTWDDMR--EGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       253 g~lyv~gg~~~~i-~~yD~~~~~W~~~~--~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      |.|++-..  ..+ ..||+++++++...  .+++... -.+++. .+|.||+-+  ...+.+||+++.+++.........
T Consensus       550 g~lWi~T~--~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~~~dGl~  624 (781)
T 3v9f_A          550 GQMWLATG--EGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWAST--NTGISCYITSKKCFYTYDHSNNIP  624 (781)
T ss_dssp             SCEEEEET--TEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEEC--SSCEEEEETTTTEEEEECGGGTCC
T ss_pred             CCEEEEEC--CCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEc--CCceEEEECCCCceEEecccCCcc
Confidence            77776543  356 88999998887654  2233221 223333 257788774  456999999999888765332221


Q ss_pred             -Cc---eeEE-EeCCeEEEEecCCceEEEEEecC
Q 044903          329 -GA---RHAA-AGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       329 -~~---~~~~-~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                       ..   .+++ .-+|.|++-+  ..++..+|+..
T Consensus       625 ~~~f~~~~~~~~~~G~l~~g~--~~Gl~~f~p~~  656 (781)
T 3v9f_A          625 QGSFISGCVTKDHNGLIYFGS--INGLCFFNPDI  656 (781)
T ss_dssp             SSCEEEEEEEECTTSCEEEEE--TTEEEEECSCC
T ss_pred             ccccccCceEECCCCEEEEEC--CCceEEEChhh
Confidence             11   1233 3367777753  34577788763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.53  E-value=0.087  Score=47.10  Aligned_cols=185  Identities=12%  Similarity=0.031  Sum_probs=91.4

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.|+.+       ..+.+++.......................-.+..++.|+.+.        .+.+||.....
T Consensus        97 dg~~l~s~~~d-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--------~~~~~d~~~~~  161 (340)
T 4aow_A           97 DGQFALSGSWD-------GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK--------TIKLWNTLGVC  161 (340)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS--------CEEEECTTSCE
T ss_pred             CCCEEEEEccc-------ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC--------eEEEEEeCCCc
Confidence            55666666532       3456677766654443222222222222223445555655433        45677766543


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEE--C--CEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEE
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~--~--g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~  300 (387)
                          -.........    .....+.+  +  +.+++.++....+.+||..+.+-...-.... + .-.+++. .++++++
T Consensus       162 ----~~~~~~~~~~----~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~-~-~v~~~~~s~~~~~l~  231 (340)
T 4aow_A          162 ----KYTVQDESHS----EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT-G-YLNTVTVSPDGSLCA  231 (340)
T ss_dssp             ----EEEECSSSCS----SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS-S-CEEEEEECTTSSEEE
T ss_pred             ----eEEEEecccc----CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC-C-cEEEEEECCCCCEEE
Confidence                2111111110    11112222  2  3455556666788999998765433221111 1 1112222 2567777


Q ss_pred             EeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          301 IDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .++.++.|.+||..+.+  .+...........+....+..++.++.++.+.+||...
T Consensus       232 s~s~Dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          232 SGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             EEETTCEEEEEETTTTE--EEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             EEeCCCeEEEEEeccCc--eeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence            88888999999997653  22222222222223333344455556677888888774

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.11  Score=46.93  Aligned_cols=142  Identities=12%  Similarity=0.091  Sum_probs=75.0

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCC-ccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNG-EKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~-~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~  271 (387)
                      +++.++.|+.+.        .+.+||..+. +.   -..+.....      ....+.+  ++.+++.++....+.+||..
T Consensus       186 ~~~~l~~~~~dg--------~i~i~d~~~~~~~---~~~~~~~~~------~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          186 KGKYIIAGHKDG--------KISKYDVSNNYEY---VDSIDLHEK------SISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             GGCEEEEEETTS--------EEEEEETTTTTEE---EEEEECCSS------CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEcCCC--------EEEEEECCCCcEe---EEEEecCCC------ceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            455566665433        6889999873 30   122211111      1222333  56666676666789999998


Q ss_pred             CCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCC--------------eEEEEeCCCCceEEccccccccCceeEE--
Q 044903          272 ANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSC--------------TLSKYDEVMDDWKEVVKSDLLKGARHAA--  334 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~--------------~v~~yd~~~~~W~~v~~~~~~~~~~~~~--  334 (387)
                      +.+-...-. ....  ...++ ..+++..++++.++              .+.+||..+.+=  +............+  
T Consensus       249 ~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~  323 (369)
T 3zwl_B          249 TLQVLKKYE-TDCP--LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE--IGRVQGHFGPLNTVAI  323 (369)
T ss_dssp             TCCEEEEEE-CSSC--EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE--EEEEECCSSCEEEEEE
T ss_pred             CCceeeeec-CCCC--ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc--hhheecccCcEEEEEE
Confidence            764432211 0100  11111 22334444443333              688888876532  22222223333222  


Q ss_pred             EeCCeEEEEecCCceEEEEEecCC
Q 044903          335 AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       335 ~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ..++++++.++.++.+.+||+...
T Consensus       324 s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          324 SPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             CTTSSEEEEEETTSEEEEEEECHH
T ss_pred             CCCCCEEEEEcCCCeEEEEECccc
Confidence            337888888888899999999843

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.49  E-value=0.13  Score=46.72  Aligned_cols=181  Identities=13%  Similarity=0.104  Sum_probs=88.4

Q ss_pred             cEEEeCCCCceeeCCCCCCCceeeeEEeeCC-EEEEEecCCCCCCCCCCceEEEE--eCCCCccccCeEEcCCCCCCccc
Q 044903          166 PLIFDPICRTWTFGPELVTPRRWCAAGYSRG-AVYVASGIGSQFSSDVAKSVEKW--DLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       166 ~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~vy--d~~t~~~~~~W~~~~~~~~~~~~  242 (387)
                      ++.+|+.+.+.+.+...........+..-++ .||+.+..+.     ....+.+|  |..+++    .+.+...+.....
T Consensus        31 ~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~-----~~~~v~~~~~~~~~g~----~~~~~~~~~~~~~  101 (361)
T 3scy_A           31 TFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSK-----DQAAVSAFAFDKEKGT----LHLLNTQKTMGAD  101 (361)
T ss_dssp             EEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSS-----TTCEEEEEEEETTTTE----EEEEEEEECSSSC
T ss_pred             EEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCC-----CCCcEEEEEEeCCCCc----EEEeeEeccCCCC
Confidence            4666888888877644311111111222234 5777665321     12245555  454466    6655533321111


Q ss_pred             ccceeEEEECCE-EEEEeeeCCeEEEEECCCC-ceeeccccc---cCC-------CCC-cEEEE-eCC-eEEEEeCCCCe
Q 044903          243 REAIDAVGWKGK-LCLVNVKGAEGAVYDVVAN-TWDDMREGM---VRG-------WRG-PVAAM-DEE-VLYGIDENSCT  307 (387)
Q Consensus       243 ~~~~~~v~~~g~-lyv~gg~~~~i~~yD~~~~-~W~~~~~~~---~~~-------~~~-~~~~~-~~g-~ly~~g~~~~~  307 (387)
                        .+..+. +|+ +|+.+.....+.+||..++ .-..+....   ..+       ... +.+++ .+| .||+.+...+.
T Consensus       102 --p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  178 (361)
T 3scy_A          102 --PCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ  178 (361)
T ss_dssp             --EEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             --cEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence              122233 665 6655444478899998643 222221000   000       001 22333 244 48887766778


Q ss_pred             EEEEeCCCCc-------eEEc-----cccccccCc-eeEEEeCCe-EEEEecCCceEEEEEecCC
Q 044903          308 LSKYDEVMDD-------WKEV-----VKSDLLKGA-RHAAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       308 v~~yd~~~~~-------W~~v-----~~~~~~~~~-~~~~~~~~~-l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.+|+.+...       ....     ...+..... ..++.-+|+ +|+.+..++.+.+||..++
T Consensus       179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            9999776543       2211     111122222 223344564 7777656788999998743

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.49  E-value=0.19  Score=44.82  Aligned_cols=144  Identities=9%  Similarity=-0.007  Sum_probs=82.5

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeeeC--CeEEEEECC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKG--AEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~~--~~i~~yD~~  271 (387)
                      +++||+.....        ..+.+||+....     ......+..     .+..+. -+|++|+.....  ..+..||+.
T Consensus        42 ~g~lyv~d~~~--------~~I~~~d~~g~~-----~~~~~~~~~-----p~gia~~~dG~l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           42 DGTIFVTNHEV--------GEIVSITPDGNQ-----QIHATVEGK-----VSGLAFTSNGDLVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             TSCEEEEETTT--------TEEEEECTTCCE-----EEEEECSSE-----EEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CCCEEEEeCCC--------CeEEEECCCCce-----EEEEeCCCC-----ceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence            57899885322        367888887653     222222211     122222 368899886443  358889988


Q ss_pred             CCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCC---ceEEccc------cccccCceeEEEeCCeEE
Q 044903          272 ANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMD---DWKEVVK------SDLLKGARHAAAGGGRVC  341 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~---~W~~v~~------~~~~~~~~~~~~~~~~l~  341 (387)
                      +++.+.+... +........+ ..++.+|+.+...+.|+++|+.+.   .|..-..      .........+..-++.||
T Consensus       104 ~g~~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ly  182 (306)
T 2p4o_A          104 DGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  182 (306)
T ss_dssp             TSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             CCeEEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEE
Confidence            8877655431 1111111222 345678888766789999999764   2221111      011122334544456899


Q ss_pred             EEecCCceEEEEEecC
Q 044903          342 AVCENGGGIVVVDVKA  357 (387)
Q Consensus       342 v~gg~~~~i~v~d~~~  357 (387)
                      +.....+.|++||+..
T Consensus       183 v~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EEETTTTEEEEEEBCT
T ss_pred             EEeCCCCEEEEEEeCC
Confidence            9877778999999874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.43  E-value=0.25  Score=42.63  Aligned_cols=219  Identities=9%  Similarity=-0.048  Sum_probs=105.0

Q ss_pred             CCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCC-Cce
Q 044903           98 TPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPIC-RTW  176 (387)
Q Consensus        98 ~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t-~~W  176 (387)
                      ....++++|..+++...+.....                ........-++..+++++  .      ..++++|..+ .+.
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~----------------~v~~~~~spdg~~l~~~~--~------~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPE----------------LFEAPNWSPDGKYLLLNS--E------GLLYRLSLAGDPSP   75 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESS----------------CCEEEEECTTSSEEEEEE--T------TEEEEEESSSCCSC
T ss_pred             cceeEEEEeCCCCceeeeccCCc----------------ceEeeEECCCCCEEEEEc--C------CeEEEEeCCCCCCc
Confidence            44568888988766544322111                001112223556555543  1      4689999998 877


Q ss_pred             eeCCCCCCCce-eeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE-ECCE
Q 044903          177 TFGPELVTPRR-WCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKGK  254 (387)
Q Consensus       177 ~~l~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~  254 (387)
                      ..+........ ......-+++.+++++...    .....++.+|..+..    -..+.....      ....+. -+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~~~~~l~~~~~~~~~----~~~~~~~~~------~~~~~~spdg~  141 (297)
T 2ojh_A           76 EKVDTGFATICNNDHGISPDGALYAISDKVE----FGKSAIYLLPSTGGT----PRLMTKNLP------SYWHGWSPDGK  141 (297)
T ss_dssp             EECCCTTCCCBCSCCEECTTSSEEEEEECTT----TSSCEEEEEETTCCC----CEECCSSSS------EEEEEECTTSS
T ss_pred             eEeccccccccccceEECCCCCEEEEEEeCC----CCcceEEEEECCCCc----eEEeecCCC------ccceEECCCCC
Confidence            77654332111 1122222455555544321    123477888887776    555543221      011122 2454


Q ss_pred             -EEEEeeeCC--eEEEEECCCCceeeccccccCCCCCcEEEE-eCCe-EEEEeCCCC--eEEEEeCCCCceEEccccccc
Q 044903          255 -LCLVNVKGA--EGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEV-LYGIDENSC--TLSKYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       255 -lyv~gg~~~--~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~-ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~  327 (387)
                       |++.+....  .++.+|..+.....+.... ..  ...++. .+++ |++.+..++  .++.++..+.....+......
T Consensus       142 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  218 (297)
T 2ojh_A          142 SFTYCGIRDQVFDIYSMDIDSGVETRLTHGE-GR--NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG  218 (297)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEECCCSS-SC--EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE
T ss_pred             EEEEEECCCCceEEEEEECCCCcceEcccCC-Cc--cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc
Confidence             554544443  4555567666665544211 11  112222 2444 555543344  466667666665554432110


Q ss_pred             cCceeEEEeCCeEEEEecCC-----------ceEEEEEecCC
Q 044903          328 KGARHAAAGGGRVCAVCENG-----------GGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~~~~~~~~~~l~v~gg~~-----------~~i~v~d~~~~  358 (387)
                       ........+|+.+++++..           ..++++|..+.
T Consensus       219 -~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          219 -DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             -EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             -cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence             0111223355554444321           45888888754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.42  E-value=0.71  Score=47.04  Aligned_cols=185  Identities=10%  Similarity=0.064  Sum_probs=103.6

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCC--CCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL--VTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++.||+ |..       ..-+++||+.+++++.....  +..........-++.||+...          .-+..||+.+
T Consensus       417 ~g~lWi-gt~-------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~  478 (781)
T 3v9f_A          417 EGNLWF-GTY-------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH----------AGVFVIDLAS  478 (781)
T ss_dssp             TSCEEE-EET-------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET----------TEEEEEESSS
T ss_pred             CCCEEE-Eec-------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC----------CceEEEeCCC
Confidence            566776 321       13578999999999887532  222212111222567887532          2478899999


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccc--cccCCCCCcEEEE-eCCeE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAM-DEEVL  298 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~-~~g~l  298 (387)
                      ++    |.................+...  +|.|++- ..+..+..||+.+++++....  .++.. .-.+++. .+|.|
T Consensus       479 ~~----~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~l  552 (781)
T 3v9f_A          479 KK----VIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSN-TINQIYRSSKGQM  552 (781)
T ss_dssp             SS----CCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCS-CEEEEEECTTSCE
T ss_pred             Ce----EEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCC-eeEEEEECCCCCE
Confidence            88    7765432211010011222333  4677654 333468899999998887643  12211 1112222 25678


Q ss_pred             EEEeCCCCeE-EEEeCCCCceEEccccccccC--ceeEEE-eCCeEEEEecCCceEEEEEecCC
Q 044903          299 YGIDENSCTL-SKYDEVMDDWKEVVKSDLLKG--ARHAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~g~~~~~v-~~yd~~~~~W~~v~~~~~~~~--~~~~~~-~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      |+-..  +.+ .+||+++++++..........  -.+++. -+|.|++.+  ..++..+|+.+.
T Consensus       553 Wi~T~--~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~  612 (781)
T 3v9f_A          553 WLATG--EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST--NTGISCYITSKK  612 (781)
T ss_dssp             EEEET--TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC--SSCEEEEETTTT
T ss_pred             EEEEC--CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc--CCceEEEECCCC
Confidence            87653  456 999999998887653221111  123333 367888875  345777887754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.42  E-value=0.047  Score=51.43  Aligned_cols=146  Identities=7%  Similarity=-0.032  Sum_probs=82.3

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ++.+.+.|+.+.        .|.+||..+..    -..+-.+...   .....++.+   ++.+.+.++.+..+.++|.+
T Consensus       131 ~~~~lasGs~dg--------~i~lWd~~~~~----~~~~~~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG--------DIMLWNFGIKD----KPTFIKGIGA---GGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS--------CEEEECSSCCS----CCEEECCCSS---SCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CCCEEEEEeCCC--------EEEEEECCCCC----ceeEEEccCC---CCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            345666666543        67888887765    3222211100   011223332   45666666666789999998


Q ss_pred             CCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe---CCeEEEEecCC
Q 044903          272 ANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG---GGRVCAVCENG  347 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~---~~~l~v~gg~~  347 (387)
                      ++.-..+...-.......+++ ..++++++.++.++.|.+||.+.+.   +............+.+   +..+++.|+.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCc
Confidence            876654432111111112222 3467788888888999999997653   2222222333333332   34577787788


Q ss_pred             ceEEEEEecCC
Q 044903          348 GGIVVVDVKAA  358 (387)
Q Consensus       348 ~~i~v~d~~~~  358 (387)
                      +.+.+||+...
T Consensus       273 ~~v~iwd~~~~  283 (435)
T 4e54_B          273 QTVKIWDLRQV  283 (435)
T ss_dssp             SBCCEEETTTC
T ss_pred             ceeeEEecccc
Confidence            88999998754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.41  E-value=0.21  Score=45.65  Aligned_cols=143  Identities=9%  Similarity=0.010  Sum_probs=83.4

Q ss_pred             EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCC
Q 044903          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      ++++.|+.+.        .+.+||..+.+    ...........   ....++.+   ++.+.+.++.+..+.++|...+
T Consensus        87 ~~l~s~~~dg--------~i~iwd~~~~~----~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKGG--------DIILWDYDVQN----KTSFIQGMGPG---DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBTS--------CEEEEETTSTT----CEEEECCCSTT---CBEEEEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred             CEEEEEcCCC--------eEEEEeCCCcc----cceeeecCCcC---CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence            5666666543        68899998887    55443221110   11223333   3466666766688999999876


Q ss_pred             ceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCe-EEEEecCCce
Q 044903          274 TWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGR-VCAVCENGGG  349 (387)
Q Consensus       274 ~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~-l~v~gg~~~~  349 (387)
                      ....+.........-.+++ ..+++.++.++.++.|.+||.....-..+.   ........+  .-+++ +++.|+.++.
T Consensus       152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~d~~  228 (383)
T 3ei3_B          152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEK---LHKAKVTHAEFNPRCDWLMATSSVDAT  228 (383)
T ss_dssp             EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEE---CSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEec---cCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence            6655543111111111222 235667777778899999999654333222   222222222  23455 8888888899


Q ss_pred             EEEEEecC
Q 044903          350 IVVVDVKA  357 (387)
Q Consensus       350 i~v~d~~~  357 (387)
                      +.+||+.+
T Consensus       229 i~iwd~~~  236 (383)
T 3ei3_B          229 VKLWDLRN  236 (383)
T ss_dssp             EEEEEGGG
T ss_pred             EEEEeCCC
Confidence            99999986

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.41  E-value=0.37  Score=49.32  Aligned_cols=169  Identities=12%  Similarity=0.023  Sum_probs=90.6

Q ss_pred             ccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCC----ccccCeEEc-C-CC
Q 044903          165 RPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG----EKNSRWEKT-G-EL  236 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~----~~~~~W~~~-~-~~  236 (387)
                      .+..++.....+..+.+-.  ....+.+.  .+++||++-...        ..|..+++...    .    ...+ . .+
T Consensus       405 ~Ir~i~l~~~~~~~l~~~~--~~~~gl~~d~~~~~lY~sD~~~--------~~I~~~~l~g~~~~~~----~~~vi~~~l  470 (791)
T 3m0c_C          405 EVRKMTLDRSEYTSLIPNL--RNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSS----YDTVISRDI  470 (791)
T ss_dssp             SEEEECTTSCCCEEEECSC--SSEEEEEEETTTTEEEEEETTT--------TEEEEEEC------------CEEEECSSC
T ss_pred             ceeEeeccCCcceeeecCC--CceEEEeecccCCeeEEeeccc--------eeEEEEeccCCCCCcc----eeEEEecCC
Confidence            4556666666655543211  11122222  367899885432        35666666542    2    2222 2 22


Q ss_pred             CCCcccccceeEEE-ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEE--eCCeEEEEeCC-CCeEEEE
Q 044903          237 KDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAM--DEEVLYGIDEN-SCTLSKY  311 (387)
Q Consensus       237 ~~~~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~--~~g~ly~~g~~-~~~v~~y  311 (387)
                      ..+.     ..++- .++.||+.......|.++|+....-+.+..   .....+ .+++  .++.||+.+.. ...|.+.
T Consensus       471 ~~P~-----GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          471 QAPD-----GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             SCCC-----EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCcc-----eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            2111     11222 357999997666889999998665444421   111122 3444  35799999843 3789999


Q ss_pred             eCCCCceEEccccccccCceeEEE--eCCeEEEEecCCceEEEEEec
Q 044903          312 DEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~--~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +++...=+.+... .+..+.+++.  .+++||+.-.....|.++|+.
T Consensus       543 ~~dG~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          543 GLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             ETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ecCCCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence            9986644443321 1223344443  367888875555667777765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.23  Score=46.83  Aligned_cols=66  Identities=6%  Similarity=-0.122  Sum_probs=41.6

Q ss_pred             CEEEEEeeeCCeEEEEECCCCceeec-cccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE
Q 044903          253 GKLCLVNVKGAEGAVYDVVANTWDDM-REGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE  320 (387)
Q Consensus       253 g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~  320 (387)
                      +++++.++.+..+.+||+.+..-... ..+.. + .-.+++..++++++.++.++.|.+||..+.+-..
T Consensus       210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~-~-~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~  276 (450)
T 2vdu_B          210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHK-H-FVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLS  276 (450)
T ss_dssp             CEEEEEEETTSCEEEEEESCTTCEEEECCCCS-S-CEEEEEECSTTEEEEEESSSEEEEEETTTCCEEE
T ss_pred             CcEEEEEcCCCcEEEEECCCCceeeeeecCCC-C-ceEEEEECCCCEEEEEeCCCeEEEEECCCCcEee
Confidence            77777777778899999876643321 11111 1 0122333367777777788999999998875433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.37  E-value=0.22  Score=46.50  Aligned_cols=173  Identities=12%  Similarity=0.015  Sum_probs=92.1

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEc-C-CCCCC
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-G-ELKDG  239 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~-~-~~~~~  239 (387)
                      ..+...|+....+..+.+-  .....+.+.  .+++||++--..        ..+..+++...........+ . .+..+
T Consensus        92 ~~I~~i~l~~~~~~~~~~~--~~~~~~l~~d~~~~~lywsD~~~--------~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             TEEEEECTTSCSCEEEECS--CSCEEEEEEETTTTEEEEEETTT--------TEEEEEEC------CCCEEEECSSCSCE
T ss_pred             ceeEEEccCCcceeEeccc--cCcceEEeeeeccCceEEEecCC--------CeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            4566777777666654221  111222232  368899874332        36777777641100002222 2 11111


Q ss_pred             cccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEE--eCCeEEEEeC-CCCeEEEEeC
Q 044903          240 RFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAM--DEEVLYGIDE-NSCTLSKYDE  313 (387)
Q Consensus       240 ~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~--~~g~ly~~g~-~~~~v~~yd~  313 (387)
                            ...++  .++.||+.......|.++|++...-+.+-.   .....+ .+++  .++.||+.+. ....|+++++
T Consensus       162 ------~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~  232 (400)
T 3p5b_L          162 ------DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  232 (400)
T ss_dssp             ------EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred             ------ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence                  22222  378999997666789999988665444321   111122 3444  3688999874 3468999998


Q ss_pred             CCCceEEccccccccCceeEEEe--CCeEEEEecCCceEEEEEec
Q 044903          314 VMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       314 ~~~~W~~v~~~~~~~~~~~~~~~--~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +...=+.+.. .....+.+++.-  +++||+.-.....|.++|..
T Consensus       233 dG~~~~~~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          233 NGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             TSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCccEEEEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence            7653333321 112233444443  67888886556677777766

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.34  E-value=0.4  Score=44.65  Aligned_cols=185  Identities=6%  Similarity=-0.012  Sum_probs=90.3

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      -++..++.|+.+       ..+.+||..+++-...-.-...  ...+...++.+.+.|+.+.        .+.++|..+.
T Consensus       157 pdg~~lasgs~D-------g~v~iWd~~~~~~~~~~~~h~~--~v~~~s~~~~~l~sgs~d~--------~i~~~d~~~~  219 (420)
T 4gga_A          157 KEGNYLAVGTSS-------AEVQLWDVQQQKRLRNMTSHSA--RVGSLSWNSYILSSGSRSG--------HIHHHDVRVA  219 (420)
T ss_dssp             TTSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSS--CEEEEEEETTEEEEEETTS--------EEEEEETTSS
T ss_pred             CCCCEEEEEECC-------CeEEEEEcCCCcEEEEEeCCCC--ceEEEeeCCCEEEEEeCCC--------ceeEeeeccc
Confidence            356677777642       4678899988754332111112  2233445667777776543        5667776655


Q ss_pred             ccccCeEE--cCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc--eeeccccccCCCCCc--EEEE--eCC
Q 044903          225 EKNSRWEK--TGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGP--VAAM--DEE  296 (387)
Q Consensus       225 ~~~~~W~~--~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~--~~~~--~~g  296 (387)
                      .    ...  +.......    ......-+|...+.++.+..+.++|..+.+  +..+..  .....+.  +++.  .++
T Consensus       220 ~----~~~~~~~~h~~~~----~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~--~~~~~~~V~~~~~~p~~~  289 (420)
T 4gga_A          220 E----HHVATLSGHSQEV----CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT--FTQHQGAVKAVAWCPWQS  289 (420)
T ss_dssp             S----CEEEEEECCSSCE----EEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE--ECCCSSCEEEEEECTTCT
T ss_pred             c----eeeEEecccccce----eeeeecCCCCeeeeeeccccceEEeeccccccceeeee--ecccCCceeeeeeCCCcc
Confidence            4    211  11111000    011122245666666666788888886543  222211  0111111  1222  134


Q ss_pred             eEEEE-eC-CCCeEEEEeCCCCceEEccccccccCcee-EEEeCC-eEEEEec-CCceEEEEEecCC
Q 044903          297 VLYGI-DE-NSCTLSKYDEVMDDWKEVVKSDLLKGARH-AAAGGG-RVCAVCE-NGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~-g~-~~~~v~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~~-~l~v~gg-~~~~i~v~d~~~~  358 (387)
                      .++.. ++ .++.|.+||..+..-.....  ....... +...++ .+++.+| .++.|.+||..+.
T Consensus       290 ~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          290 NVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             TEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             cEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            45444 33 56889999998775433221  1111122 223334 4444433 3577888888743

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.38  Score=43.38  Aligned_cols=153  Identities=7%  Similarity=-0.029  Sum_probs=80.8

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ++++++.|+.+.        .+.+||..+.+    -..+....... . -.+.+..-+|.+.+.|+.+..+.+||..+.+
T Consensus       138 ~~~~l~s~s~dg--------~i~~wd~~~~~----~~~~~~~~~~~-~-i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          138 NTEYFIWADNRG--------TIGFQSYEDDS----QYIVHSAKSDV-E-YSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             -CCEEEEEETTC--------CEEEEESSSSC----EEEEECCCSSC-C-CCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCEEEEEeCCC--------cEEEEECCCCc----EEEEEecCCCC-c-eEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            456677776543        68899998887    43322111110 0 0021222367777777777899999998765


Q ss_pred             ee--eccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceEE-cccccc--cc--CceeEEEeCCeEEEEecC
Q 044903          275 WD--DMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMDDWKE-VVKSDL--LK--GARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       275 W~--~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~~W~~-v~~~~~--~~--~~~~~~~~~~~l~v~gg~  346 (387)
                      -.  .+..  .....-.+++.. ++...+.++ ++.|.+||..+..=.. +.....  ..  ........+|+.++.++.
T Consensus       204 ~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          204 QASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             SCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence            33  2221  001111223332 455555555 4599999997653211 111100  11  111233346777777666


Q ss_pred             -CceEEEEEecCCCCCceeEE
Q 044903          347 -GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       347 -~~~i~v~d~~~~~~~~~W~~  366 (387)
                       +..+.+||....  ...|+.
T Consensus       281 ~d~~i~v~~~~~~--~~~~~~  299 (343)
T 3lrv_A          281 ESNSLTIYKFDKK--TKNWTK  299 (343)
T ss_dssp             TTTEEEEEEECTT--TCSEEE
T ss_pred             CCCcEEEEEEccc--ccceEe
Confidence             788999998632  235774

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.30  E-value=0.72  Score=43.11  Aligned_cols=176  Identities=10%  Similarity=-0.017  Sum_probs=95.2

Q ss_pred             ccEEEeCCCCce-eeC----C-CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCC
Q 044903          165 RPLIFDPICRTW-TFG----P-ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD  238 (387)
Q Consensus       165 ~~~vydp~t~~W-~~l----~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~  238 (387)
                      .++++|+.++.- +.+    + ....++. .+....++.||+...         ...+..||+.+..    -..+...+.
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~-iav~p~~g~lyv~d~---------~~~I~~~d~~~~~----~~~~~~~~~  260 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGSTFSGKIGA-VALDETEEWLYFVDS---------NKNFGRFNVKTQE----VTLIKQLEL  260 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCTTSCSCCCB-CEECTTSSEEEEECT---------TCEEEEEETTTCC----EEEEEECCC
T ss_pred             eEEEEEcCCCceeEEeeeccchhcCCcEE-EEEeCCCCeEEEEEC---------CCcEEEEECCCCC----EEEEecccc
Confidence            688888876532 233    2 1112221 111122678999422         1268899998876    554421111


Q ss_pred             Ccccccc-e-eEEEE--CCEEEEEeeeCCeEEEEECCCCceeecc-cc----ccC------CCCCcE-EEE-eCCeEEEE
Q 044903          239 GRFSREA-I-DAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMR-EG----MVR------GWRGPV-AAM-DEEVLYGI  301 (387)
Q Consensus       239 ~~~~~~~-~-~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~-~~----~~~------~~~~~~-~~~-~~g~ly~~  301 (387)
                      ....... . ..++-  ++.||+.......+.+||+... -..+. ..    ...      ....+. +++ .+|+||+.
T Consensus       261 ~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          261 SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            0000011 1 33333  5899998766678999988654 22221 10    000      012233 333 25689999


Q ss_pred             eC-CCCeEEEEeCCCCceEEccccc-------------cccCceeEEEe-CCeEEEEecCCceEEEEEe
Q 044903          302 DE-NSCTLSKYDEVMDDWKEVVKSD-------------LLKGARHAAAG-GGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       302 g~-~~~~v~~yd~~~~~W~~v~~~~-------------~~~~~~~~~~~-~~~l~v~gg~~~~i~v~d~  355 (387)
                      +. ....|.+||+.+..-+.+...+             .+..+..++.. +|.|||....++.|..+++
T Consensus       340 d~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            87 7889999996666555443221             12224444443 5889998777778877765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.23  E-value=0.52  Score=40.79  Aligned_cols=151  Identities=11%  Similarity=-0.003  Sum_probs=84.5

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++.||+....       ...+.++|+....-+.+.+....+....+.. .+++||+.....      ....++++++...
T Consensus        90 ~~~lyv~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~------~~~~I~~~~~dg~  156 (267)
T 1npe_A           90 GRTIFWTDSQ-------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR------DNPKIETSHMDGT  156 (267)
T ss_dssp             TTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS------SSCEEEEEETTSC
T ss_pred             CCeEEEEECC-------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC------CCcEEEEEecCCC
Confidence            5789987542       2568888887544333321111111222222 268999985331      1236778887654


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEe
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGID  302 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g  302 (387)
                      .    -..+...... .+   ...+.-  ++.||+.......+.+||+....=..+.....   ....+++.++.||+..
T Consensus       157 ~----~~~~~~~~~~-~P---~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d~~~lyva~  225 (267)
T 1npe_A          157 N----RRILAQDNLG-LP---NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSYGKNLYYTD  225 (267)
T ss_dssp             C----CEEEECTTCS-CE---EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEETTEEEEEE
T ss_pred             C----cEEEEECCCC-CC---cEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC---CceEEEEeCCEEEEEE
Confidence            3    3333211111 10   222222  57899987666889999997543222211111   1124556788999998


Q ss_pred             CCCCeEEEEeCCCCceEE
Q 044903          303 ENSCTLSKYDEVMDDWKE  320 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~  320 (387)
                      ...+.|.++|+++.+-..
T Consensus       226 ~~~~~v~~~d~~~g~~~~  243 (267)
T 1npe_A          226 WKTNSVIAMDLAISKEMD  243 (267)
T ss_dssp             TTTTEEEEEETTTTEEEE
T ss_pred             CCCCeEEEEeCCCCCceE
Confidence            777899999998765443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.22  E-value=0.31  Score=43.76  Aligned_cols=183  Identities=9%  Similarity=0.034  Sum_probs=94.2

Q ss_pred             CEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCce-eeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      +.+++.|+.+       ..+.+||..+........+..... -.+.+.. +++.++.|+.+.        .+.+||..+.
T Consensus        54 g~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--------~v~iwd~~~~  118 (368)
T 3mmy_A           54 GNFLIAGSWA-------NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK--------TAKMWDLSSN  118 (368)
T ss_dssp             SEEEEEEETT-------SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTT
T ss_pred             ceEEEEECCC-------CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC--------cEEEEEcCCC
Confidence            3677776632       357888887633222111111111 1111222 556666666543        7889999888


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE----CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEE
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW----KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYG  300 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~----~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~  300 (387)
                      +    -........+      ...+.+    ++.+++.++.+..+.+||..+.+-...-.   ......+....... .+
T Consensus       119 ~----~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~-~~  184 (368)
T 3mmy_A          119 Q----AIQIAQHDAP------VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---LPERCYCADVIYPM-AV  184 (368)
T ss_dssp             E----EEEEEECSSC------EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE---CSSCEEEEEEETTE-EE
T ss_pred             C----ceeeccccCc------eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe---cCCCceEEEecCCe-eE
Confidence            7    5543322211      223332    66777777777889999987664221111   11112233344444 44


Q ss_pred             EeCCCCeEEEEeCCCCc--eEEccccccccCceeEEEeCC----eEEEEecCCceEEEEEecCC
Q 044903          301 IDENSCTLSKYDEVMDD--WKEVVKSDLLKGARHAAAGGG----RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~----~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++..++.+.+||.....  +..+...............+.    ..++.|+.++.+.+||....
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence            44457789999987653  333322211111222222222    23677677888888888743

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.20  E-value=0.36  Score=47.46  Aligned_cols=122  Identities=11%  Similarity=0.098  Sum_probs=74.3

Q ss_pred             eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC-CCCccccCeEEcCCCCCCccc-----ccceeEEEECCEEEEEeeeC
Q 044903          189 CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL-MNGEKNSRWEKTGELKDGRFS-----REAIDAVGWKGKLCLVNVKG  262 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~-~t~~~~~~W~~~~~~~~~~~~-----~~~~~~v~~~g~lyv~gg~~  262 (387)
                      .+.++.++.||+....        ...+..+|. .+++..  |+.-.........     ......++.++++|+... .
T Consensus        56 ~~P~v~~g~vyv~~~~--------~~~v~AlD~~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-d  124 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAF--------PNNTYALNLNDPGKIV--WQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-N  124 (571)
T ss_dssp             SCCEEETTEEEEECST--------TTCEEEEETTCTTSEE--EEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-T
T ss_pred             cccEEECCEEEEEeCC--------CCEEEEEeCCCCccEE--EEEcCCCCccccccccccccccccEEECCEEEEEeC-C
Confidence            3445679999998542        126889999 888866  9875433211100     001224567999998743 3


Q ss_pred             CeEEEEECCCC--ceeeccccccCCC-CCcEEEEeCCeEEEEeCC-----CCeEEEEeCCCC--ceEEc
Q 044903          263 AEGAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDEEVLYGIDEN-----SCTLSKYDEVMD--DWKEV  321 (387)
Q Consensus       263 ~~i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~g~ly~~g~~-----~~~v~~yd~~~~--~W~~v  321 (387)
                      ..+.++|.+++  .|+.-......+. ...+.++.++++|+-...     ++.|+.||.++.  .|+.-
T Consensus       125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            47999999876  6975432111111 112234468888876532     578999999764  58653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.19  E-value=0.78  Score=46.87  Aligned_cols=181  Identities=11%  Similarity=0.070  Sum_probs=102.0

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCC------CCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL------VTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~------~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      ++.||+...         .-+++||+.+++|+.....      +..........-++.||+...  .        -+..|
T Consensus       462 ~g~lwigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~--------Gl~~~  522 (795)
T 4a2l_A          462 EGNLWLGTL---------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--E--------GLSVF  522 (795)
T ss_dssp             SSCEEEEES---------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--S--------CEEEE
T ss_pred             CCCEEEEec---------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--C--------ceEEE
Confidence            466766432         3478999999999887533      111112222223577887643  1        36788


Q ss_pred             eCCCCccccCeEEcCCC-CCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeecc--ccccCCCCCcEEEEe
Q 044903          220 DLMNGEKNSRWEKTGEL-KDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMR--EGMVRGWRGPVAAMD  294 (387)
Q Consensus       220 d~~t~~~~~~W~~~~~~-~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~--~~~~~~~~~~~~~~~  294 (387)
                      |+.+++    + ..... ...........++..  +|.|++-+. . .+..||+.+++++...  .+++... -.+++..
T Consensus       523 ~~~~~~----~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d  594 (795)
T 4a2l_A          523 KQEGLD----I-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNV-VYGILED  594 (795)
T ss_dssp             EEETTE----E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSC-EEEEEEC
T ss_pred             eCCCCe----E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhh-eEEEEEC
Confidence            888887    7 43311 111111111223333  577776533 2 6899999999887654  2233221 1223332


Q ss_pred             -CCeEEEEeCCCCeEEEEeCCCCceEEcccccccc-Cc---eeEE-EeCCeEEEEecCCceEEEEEecC
Q 044903          295 -EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK-GA---RHAA-AGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       295 -~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~-~~---~~~~-~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                       +|.||+-+  ...+.+||+++++++......... ..   .+++ .-+|.|++-+  ..++..+|+..
T Consensus       595 ~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~--~~Gl~~~~p~~  659 (795)
T 4a2l_A          595 SFGRLWLST--NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGG--INGITTFRPEL  659 (795)
T ss_dssp             TTSCEEEEE--TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEE--TTEEEEECGGG
T ss_pred             CCCCEEEEc--CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEec--CCceEEEcHHH
Confidence             57788875  467999999999888765322211 11   2233 3467777653  34577788763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.14  E-value=0.64  Score=41.00  Aligned_cols=195  Identities=12%  Similarity=0.126  Sum_probs=100.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCCcee-eeEEee---CCEEEEEecCCCCCCCCCCceEEEE
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRRW-CAAGYS---RGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      ++.+++.|+.+       ..+.+||..+.  .++.+..+...... .+.+..   ++.+++.|+.+.        .+.+|
T Consensus        22 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg--------~v~vw   86 (351)
T 3f3f_A           22 YGRHVATCSSD-------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK--------TVKLW   86 (351)
T ss_dssp             SSSEEEEEETT-------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS--------CEEEE
T ss_pred             CCCEEEEeeCC-------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC--------eEEEE
Confidence            45556665532       35677776643  33332222211111 122222   366777776643        57788


Q ss_pred             eCCCCccc---cCeEEcCCCCCCcccccceeEEEE--C--CEEEEEeeeCCeEEEEECCCCc----eeeccc-----ccc
Q 044903          220 DLMNGEKN---SRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANT----WDDMRE-----GMV  283 (387)
Q Consensus       220 d~~t~~~~---~~W~~~~~~~~~~~~~~~~~~v~~--~--g~lyv~gg~~~~i~~yD~~~~~----W~~~~~-----~~~  283 (387)
                      |..+.+..   -.|..+..+....   .....+.+  +  +.+.+.++.+..+.+||..+.+    |.....     ..+
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSK---GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCS---SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             ecCCCcccccccCcceeeeecccC---CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            87764200   0033333222111   11223333  2  6666676766789999987653    321110     000


Q ss_pred             CCC--CCcEEEEe----CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCce-eEEE-eCC----eEEEEecCCceEE
Q 044903          284 RGW--RGPVAAMD----EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR-HAAA-GGG----RVCAVCENGGGIV  351 (387)
Q Consensus       284 ~~~--~~~~~~~~----~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~-~~~~-~~~----~l~v~gg~~~~i~  351 (387)
                      ...  ...+++..    ++.+++.++.++.+..++........+.......... ++.. .++    ++++.|+.++.+.
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            011  11122221    2567777777778877788777776655554444332 2232 344    7888888889999


Q ss_pred             EEEecCC
Q 044903          352 VVDVKAA  358 (387)
Q Consensus       352 v~d~~~~  358 (387)
                      +||+...
T Consensus       244 iwd~~~~  250 (351)
T 3f3f_A          244 IFKITEK  250 (351)
T ss_dssp             EEEEEEC
T ss_pred             EEeCCCC
Confidence            9999853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.11  E-value=0.19  Score=47.18  Aligned_cols=105  Identities=10%  Similarity=-0.008  Sum_probs=59.7

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      ++.+++.++....+.+||..+.. ...+.........-.+++..  +..+++.++.++.|.+||..+.. ..+.......
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~  321 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHK  321 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCC
Confidence            45677777767899999998652 11111100111011123322  33488888889999999997632 1111222222


Q ss_pred             CceeEEEe---CCeEEEEecCCceEEEEEecC
Q 044903          329 GARHAAAG---GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       329 ~~~~~~~~---~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .....+.+   +..+++.++.++.+.+||+..
T Consensus       322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            22222222   336888888888999999985

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.11  E-value=0.0018  Score=64.03  Aligned_cols=34  Identities=18%  Similarity=0.510  Sum_probs=25.2

Q ss_pred             CCCCCCChHHHHHHHhhhcC----hhhHHHhhHhhhhh
Q 044903           40 QPLLPGLPDHIAHLCLSHVH----PSILHNVCHSWRRL   73 (387)
Q Consensus        40 ~~~~~~LP~dl~~~iL~rLP----~~~~r~Vck~W~~l   73 (387)
                      ...|..||+||+.+||++||    ..+++.|||+|+.+
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            35788999999999999999    66788999999988

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.10  E-value=0.7  Score=47.19  Aligned_cols=172  Identities=10%  Similarity=0.056  Sum_probs=97.2

Q ss_pred             ccEEEeCCCCceeeCCC----CCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC-
Q 044903          165 RPLIFDPICRTWTFGPE----LVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG-  239 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~-  239 (387)
                      -+++||+.+++++....    ++..........-++.|++...          .-+.+||+.+++    |........+ 
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~----~~~~~~~~~~~  493 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL----------SALVRFNPEQRS----FTTIEKEKDGT  493 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES----------SCEEEEETTTTE----EEECCBCTTCC
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec----------CceeEEeCCCCe----EEEcccccccc
Confidence            47899999998877543    2212211112222567777542          146889999998    8877533100 


Q ss_pred             cccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccc-----cccCCCCCcEEEE-eCCeEEEEeCCCCeEEEE
Q 044903          240 RFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMRE-----GMVRGWRGPVAAM-DEEVLYGIDENSCTLSKY  311 (387)
Q Consensus       240 ~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~-----~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~y  311 (387)
                      ........+...  +|.|++-+.  ..+..||+.++++ ....     .++.. ...+++. .+|.|++-..  +.+.+|
T Consensus       494 ~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT~--~Gl~~~  567 (795)
T 4a2l_A          494 PVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGTR--EGFYCF  567 (795)
T ss_dssp             BCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEES--SCEEEE
T ss_pred             ccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEeC--CCceeE
Confidence            011011222333  567777543  4688999988887 3321     11111 1112222 3567887653  379999


Q ss_pred             eCCCCceEEccccccccC-c-eeEEE-eCCeEEEEecCCceEEEEEecCC
Q 044903          312 DEVMDDWKEVVKSDLLKG-A-RHAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~-~-~~~~~-~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      |+++++++.......... . .+++. -+|.|++.+  ..++..+|+.+.
T Consensus       568 d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~  615 (795)
T 4a2l_A          568 NEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETE  615 (795)
T ss_dssp             ETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTT
T ss_pred             CCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCC
Confidence            999998887653222111 1 23333 367888875  466788888754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.10  E-value=0.92  Score=48.69  Aligned_cols=146  Identities=12%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceee-CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      .++..++.|+.+       ..+.+||..+.+-.. +.. ........+..-+++..+.|+.+.        .+.+||..+
T Consensus       625 ~~~~~l~s~~~d-------~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~--------~v~vwd~~~  688 (1249)
T 3sfz_A          625 QDGQRIASCGAD-------KTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCSADK--------KVKIWDSAT  688 (1249)
T ss_dssp             TTSSEEEEEETT-------SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTT
T ss_pred             CCCCEEEEEeCC-------CeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCCEEEEEeCCC--------eEEEEECCC
Confidence            366677776632       467899998876433 221 111111111222566666666533        689999988


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEE----CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGW----KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVL  298 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~----~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~l  298 (387)
                      ++    -...-.-...     ....+.+    ++.+.+.|+....+.+||..+..-...-......  -.+++ ..++..
T Consensus       689 ~~----~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~--v~~~~~sp~~~~  757 (1249)
T 3sfz_A          689 GK----LVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS--VNHCRFSPDDEL  757 (1249)
T ss_dssp             CC----EEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC--EEEEEECSSTTE
T ss_pred             Cc----eEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC--EEEEEEecCCCE
Confidence            77    3322111111     1223333    3345555666678999999877543221111111  11122 234566


Q ss_pred             EEEeCCCCeEEEEeCCCCc
Q 044903          299 YGIDENSCTLSKYDEVMDD  317 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~  317 (387)
                      .+.++.++.|.+||..+..
T Consensus       758 l~s~s~dg~v~vwd~~~~~  776 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSAN  776 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTE
T ss_pred             EEEEECCCeEEEEeCCCCc
Confidence            6667678889999886653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.01  E-value=0.73  Score=41.47  Aligned_cols=141  Identities=9%  Similarity=0.072  Sum_probs=75.1

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeE-EcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWE-KTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~-~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ++.+.+.|+.+.        .+.+||..+.+    -. .+..-..      ...++.+  +++..+.++.+..+.+||..
T Consensus        87 ~~~~l~s~s~D~--------~v~lwd~~~~~----~~~~~~~h~~------~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           87 ENCFAISSSWDK--------TLRLWDLRTGT----TYKRFVGHQS------EVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             STTEEEEEETTS--------EEEEEETTSSC----EEEEEECCCS------CEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             CCCEEEEEcCCC--------cEEEEECCCCc----EEEEEcCCCC------cEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            455666666543        78899988876    32 2211111      1222332  56666677777889999986


Q ss_pred             CCceeeccccccCCCCCcEEEEe-C----------CeEEEEeCCCCeEEEEeCCCCceEEccccccccCcee--EEEeCC
Q 044903          272 ANTWDDMREGMVRGWRGPVAAMD-E----------EVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH--AAAGGG  338 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~~~-~----------g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~~  338 (387)
                      ...-............-.+++.. .          +.+++.++.++.|.+||....   .............  ....+|
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ---IRYTFKAHESNVNHLSISPNG  225 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---EEEEEECCSSCEEEEEECTTS
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc---eeEEEcCccccceEEEECCCC
Confidence            44322221100000000111111 1          245666777899999995432   2222222222222  223478


Q ss_pred             eEEEEecCCceEEEEEec
Q 044903          339 RVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       339 ~l~v~gg~~~~i~v~d~~  356 (387)
                      +.++.|+.++.+.+||+.
T Consensus       226 ~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          226 KYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             SEEEEEETTCEEEEEESS
T ss_pred             CEEEEEcCCCeEEEEECC
Confidence            888888888999999984

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.01  E-value=0.32  Score=47.43  Aligned_cols=146  Identities=9%  Similarity=-0.004  Sum_probs=80.8

Q ss_pred             EEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--C-CEEEEEeeeCCeEEEEECCCCc
Q 044903          198 VYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--K-GKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       198 iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~-g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      +++.|+.+.        .+.+||..+.+    -...  +............+.+  + +.+++.++....+.+||..+.+
T Consensus       175 ~l~~~~~d~--------~v~vwd~~~~~----~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          175 RSMTVGDDG--------SVVFYQGPPFK----FSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             EEEEEETTT--------EEEEEETTTBE----EEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             EEEEEeCCC--------cEEEEeCCCcc----eeee--ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            666666543        68888877655    2221  1111000001223333  4 6777777777889999998765


Q ss_pred             eeecc-cc-ccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccc---cccCceeEEEeCCeEEEEecCCce
Q 044903          275 WDDMR-EG-MVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD---LLKGARHAAAGGGRVCAVCENGGG  349 (387)
Q Consensus       275 W~~~~-~~-~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~---~~~~~~~~~~~~~~l~v~gg~~~~  349 (387)
                      -...- .. ......-.+++..++..++.++.++.+.+||..+.+-......+   .......+...++..++.|+.++.
T Consensus       241 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  320 (615)
T 1pgu_A          241 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT  320 (615)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred             EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCC
Confidence            43221 10 01111112233326777777777899999999876543322222   111223333347777888788889


Q ss_pred             EEEEEecC
Q 044903          350 IVVVDVKA  357 (387)
Q Consensus       350 i~v~d~~~  357 (387)
                      +.+||..+
T Consensus       321 i~~~d~~~  328 (615)
T 1pgu_A          321 LNFYELGH  328 (615)
T ss_dssp             EEEEETTE
T ss_pred             EEEEECCC
Confidence            99999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=95.99  E-value=0.22  Score=49.96  Aligned_cols=188  Identities=11%  Similarity=0.044  Sum_probs=93.3

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      .++.+++.|+.+       ..+.+||..+.+-...-.-........+..-+++.++.|+.+.        .+.+||....
T Consensus       440 ~~g~~l~sgs~D-------g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~--------~i~iwd~~~~  504 (694)
T 3dm0_A          440 SDGQFALSGSWD-------GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR--------TIKLWNTLGE  504 (694)
T ss_dssp             TTSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS--------CEEEECTTSC
T ss_pred             CCCCEEEEEeCC-------CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC--------EEEEEECCCC
Confidence            356666666642       4678889887653321000111111111122455666666543        6777776554


Q ss_pred             ccccCeEEcCCCCCCcccccceeEEEE--CC--EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEE
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDAVGW--KG--KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLY  299 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g--~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly  299 (387)
                      .    =..+......  ......++.+  ++  .+.+.++.+..+.+||+.+.+-...-.. ..+ .-.+++. .+++++
T Consensus       505 ~----~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~-~v~~v~~spdg~~l  576 (694)
T 3dm0_A          505 C----KYTISEGGEG--HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTG-YVSTVAVSPDGSLC  576 (694)
T ss_dssp             E----EEEECSSTTS--CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSS-CEEEEEECTTSSEE
T ss_pred             c----ceeeccCCCC--CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCC-CEEEEEEeCCCCEE
Confidence            3    1122111111  0111223333  22  3455566668899999987643322110 111 1112222 356777


Q ss_pred             EEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe-CCeEEEEecCCceEEEEEecCC
Q 044903          300 GIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.++.|.+||..+.+-  +..........++... ++.+++. +.+..|.+||+.+.
T Consensus       577 ~sg~~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~  633 (694)
T 3dm0_A          577 ASGGKDGVVLLWDLAEGKK--LYSLEANSVIHALCFSPNRYWLCA-ATEHGIKIWDLESK  633 (694)
T ss_dssp             EEEETTSBCEEEETTTTEE--EECCBCSSCEEEEEECSSSSEEEE-EETTEEEEEETTTT
T ss_pred             EEEeCCCeEEEEECCCCce--EEEecCCCcEEEEEEcCCCcEEEE-EcCCCEEEEECCCC
Confidence            7888889999999987642  2222222222223333 4444444 55667999998754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.94  E-value=1.3  Score=43.83  Aligned_cols=183  Identities=13%  Similarity=-0.023  Sum_probs=102.6

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCc-eeeCC--CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRT-WTFGP--ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~-W~~l~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~  221 (387)
                      .++.||+.--       ....+.++++.... +..+-  .+..|. ..+....+++||++-..        ...++++|+
T Consensus        50 ~~~~ly~sD~-------~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~--------~~~I~v~~~  113 (619)
T 3s94_A           50 SHGLIYWSDV-------SEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSE--------TNRIEVSNL  113 (619)
T ss_dssp             TTTEEEEEET-------TTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETT--------TTEEEEEET
T ss_pred             CCCEEEEEEC-------CCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCC--------CCEEEEEEC
Confidence            3678888743       22467777776542 23221  111111 12222247899998533        247899998


Q ss_pred             CCCccccCeEEc--CCCCCCcccccceeEEE--ECCEEEEEee-eCCeEEEEECCCCceeecc-ccccCCCCCc-EEEEe
Q 044903          222 MNGEKNSRWEKT--GELKDGRFSREAIDAVG--WKGKLCLVNV-KGAEGAVYDVVANTWDDMR-EGMVRGWRGP-VAAMD  294 (387)
Q Consensus       222 ~t~~~~~~W~~~--~~~~~~~~~~~~~~~v~--~~g~lyv~gg-~~~~i~~yD~~~~~W~~~~-~~~~~~~~~~-~~~~~  294 (387)
                      ....    =+.+  ..+..|+      ..++  .+|.||+..- ....++..+++...-+.+- ..+    ..+ .+++.
T Consensus       114 dG~~----~~~l~~~~l~~P~------~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~----~~P~Glald  179 (619)
T 3s94_A          114 DGSL----RKVLFWQELDQPR------AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI----YWPNGLTLD  179 (619)
T ss_dssp             TSCS----CEEEECSSCSCCC------CEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC----SSEEEEEEE
T ss_pred             CCCC----EEEEEeCCCCCCc------eEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC----CCCcEEEEE
Confidence            7654    2222  2333222      2233  3689999862 2367888888654333322 111    112 33443


Q ss_pred             --CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          295 --EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 --~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                        +++||+.+...+.|+++|.+...=+.+.. .....+++++..++.||+.-.....|.++|..++
T Consensus       180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          180 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             TTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSSEEEEECTTTCSEEEEESSSC
T ss_pred             ccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCC
Confidence              68999999878899999997643222221 1233456788888899999667788999998754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=95.92  E-value=0.63  Score=41.81  Aligned_cols=182  Identities=12%  Similarity=0.003  Sum_probs=97.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.+|+++..       ...+++||+.+++.+... .+. .....+..-++++++...          ..+.+||+.+++
T Consensus        60 ~~~l~~~d~~-------~~~i~~~d~~~~~~~~~~-~~~-~v~~i~~~~dg~l~v~~~----------~gl~~~d~~~g~  120 (326)
T 2ghs_A           60 SGTAWWFNIL-------ERELHELHLASGRKTVHA-LPF-MGSALAKISDSKQLIASD----------DGLFLRDTATGV  120 (326)
T ss_dssp             TTEEEEEEGG-------GTEEEEEETTTTEEEEEE-CSS-CEEEEEEEETTEEEEEET----------TEEEEEETTTCC
T ss_pred             CCEEEEEECC-------CCEEEEEECCCCcEEEEE-CCC-cceEEEEeCCCeEEEEEC----------CCEEEEECCCCc
Confidence            3678887643       146899999988765432 121 112222334678887641          147899999888


Q ss_pred             cccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeee------CCeEEEEECCCCceeeccccccCCCCCcEEEEe-CC
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVK------GAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE  296 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~------~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g  296 (387)
                          .+.+...+..... .....+.  -+|++|+....      ...++.||  +++.+.+......   ...++.. ++
T Consensus       121 ----~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~---~~~i~~s~dg  190 (326)
T 2ghs_A          121 ----LTLHAELESDLPG-NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISI---PNSICFSPDG  190 (326)
T ss_dssp             ----EEEEECSSTTCTT-EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESS---EEEEEECTTS
T ss_pred             ----EEEEeeCCCCCCC-CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcc---cCCeEEcCCC
Confidence                7766543221100 1111222  36788875432      14678888  4555444221111   1123332 34


Q ss_pred             -eEEEEeCCCCeEEEEeCC--CC-ceE---Eccccccc-cCceeEE-EeCCeEEEEecCCceEEEEEec
Q 044903          297 -VLYGIDENSCTLSKYDEV--MD-DWK---EVVKSDLL-KGARHAA-AGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       297 -~ly~~g~~~~~v~~yd~~--~~-~W~---~v~~~~~~-~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                       .||+.+...+.|++||.+  +. ...   .+...... .....++ .-+|.||+...+++.+.+||+.
T Consensus       191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence             688887667889999975  43 221   11111100 1112232 3367888876556778888875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=95.88  E-value=0.73  Score=41.06  Aligned_cols=181  Identities=8%  Similarity=-0.032  Sum_probs=89.0

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceee-CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      .++..++.|+.+       ..+.+||..+++-.. +..-. .........-++.+++.|+.+.        .+.+||...
T Consensus        75 ~dg~~l~s~s~D-------~~v~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~--------~i~vwd~~~  138 (319)
T 3frx_A           75 ADGAYALSASWD-------KTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDK--------TIKVWTIKG  138 (319)
T ss_dssp             TTSSEEEEEETT-------SEEEEEETTTTEEEEEEECCS-SCEEEEEECTTSCEEEEEETTS--------CEEEEETTS
T ss_pred             CCCCEEEEEeCC-------CEEEEEECCCCCeeEEEccCC-CcEEEEEEcCCCCEEEEEeCCC--------eEEEEECCC
Confidence            355666666532       467889988775322 21111 1111111122456667776544        577888765


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEE--------CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-Ee
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--------KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MD  294 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~--------~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~  294 (387)
                      ..    -..+..-...      ...+.+        ++.+.+.++.+..+.+||+.+.+-...-.+-  ...-.+++ ..
T Consensus       139 ~~----~~~~~~h~~~------v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp  206 (319)
T 3frx_A          139 QC----LATLLGHNDW------VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASP  206 (319)
T ss_dssp             CE----EEEECCCSSC------EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECT
T ss_pred             Ce----EEEEeccCCc------EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC--CCcEEEEEEcC
Confidence            44    3332211111      111111        2335556666688999998765432211100  00111222 23


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE-EeCCeEEEEecCCceEEEEEec
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ++++++.++.++.|.+||..+.+=.  ...........++ ..++..++.+ .+..+.+++..
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~la~~-~~~~i~v~~~~  266 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAA-TATGIKVFSLD  266 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEE--EEEECCSCEEEEEECSSSSEEEEE-ETTEEEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEE--EEecCCCcEEEEEEcCCCCEEEEE-cCCCcEEEEeC
Confidence            5677777888899999999876422  2221111122222 3355555553 34557777765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.88  E-value=0.19  Score=44.63  Aligned_cols=138  Identities=17%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             CccEEEeCCCCceeeCCCCCCC--ceeeeEEeeCC-EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          164 TRPLIFDPICRTWTFGPELVTP--RRWCAAGYSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~--r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      ..+.++|+.+.+-...-.++..  +....+..-++ .+|+.+...        ..+.+||..+.+    -...-..+.+.
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~~   78 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGE----TLGRIDLSTPE   78 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCC----EEEEEECCBTT
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC--------CeEEEEECCCCC----eEeeEEcCCcc
Confidence            4678888887755432222211  11111222234 678776532        368999998877    33221111100


Q ss_pred             -ccccceeEE-EECC-EEEEEee-----------eCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCC-eEEEEeCC
Q 044903          241 -FSREAIDAV-GWKG-KLCLVNV-----------KGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEE-VLYGIDEN  304 (387)
Q Consensus       241 -~~~~~~~~v-~~~g-~lyv~gg-----------~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g-~ly~~g~~  304 (387)
                       ........+ .-+| .+|+...           ....+.+||+.+.+....-. ....  ...++. .++ .||+.   
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~--~~~~~~s~dg~~l~~~---  152 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQ--ITMLAWARDGSKLYGL---  152 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSS--CCCEEECTTSSCEEEE---
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe-CCCC--cceeEECCCCCEEEEe---
Confidence             000001122 2245 6776641           13689999998765432211 1111  122232 234 46666   


Q ss_pred             CCeEEEEeCCCCceE
Q 044903          305 SCTLSKYDEVMDDWK  319 (387)
Q Consensus       305 ~~~v~~yd~~~~~W~  319 (387)
                      ++.+++||.++.+-.
T Consensus       153 ~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          153 GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             SSSEEEEETTTTEEE
T ss_pred             CCeEEEEECCCCcEe
Confidence            468999999877544

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.85  E-value=0.57  Score=46.21  Aligned_cols=149  Identities=8%  Similarity=0.071  Sum_probs=83.9

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC-CC-CCCcccccceeEEEE--CCEEEEEeeeCCeEEEEEC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG-EL-KDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~-~~-~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~  270 (387)
                      ++++++.|+.+.        .+.+||..+++    -...- .. ...........++.+  +|+..+.++.+..+.++|+
T Consensus       201 dg~~las~s~D~--------~i~lwd~~~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~  268 (611)
T 1nr0_A          201 DGSLFASTGGDG--------TIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV  268 (611)
T ss_dssp             TSSEEEEEETTS--------CEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEECCC--------cEEEEECCCCc----EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            567777777644        67889988776    33221 10 000000111223333  6777777777789999999


Q ss_pred             CCCceeec-cccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCcee--EEEeCCeEEEEecCC
Q 044903          271 VANTWDDM-REGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVCENG  347 (387)
Q Consensus       271 ~~~~W~~~-~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~~~l~v~gg~~  347 (387)
                      .+.+.... ....... .....+..++...+.+..++.+..||+++..-..  ....+.....  ....+|+.++.++.+
T Consensus       269 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~--~~~gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          269 ATLKVEKTIPVGTRIE-DQQLGIIWTKQALVSISANGFINFVNPELGSIDQ--VRYGHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             TTTEEEEEEECCSSGG-GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceeeeecCCCCcc-ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce--EEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            88765432 1110000 0112223355556666678899999988765222  2222222222  223478888888888


Q ss_pred             ceEEEEEecCC
Q 044903          348 GGIVVVDVKAA  358 (387)
Q Consensus       348 ~~i~v~d~~~~  358 (387)
                      +.+.+||+.++
T Consensus       346 ~~v~~Wd~~~~  356 (611)
T 1nr0_A          346 GHINSWDISTG  356 (611)
T ss_dssp             SCEEEEETTTC
T ss_pred             CcEEEEECCCC
Confidence            99999998753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.81  E-value=0.97  Score=43.99  Aligned_cols=186  Identities=11%  Similarity=-0.064  Sum_probs=93.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-C-CEEEEEecCCCCCCCCCCceEEEEeC--
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-R-GAVYVASGIGSQFSSDVAKSVEKWDL--  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~vyd~--  221 (387)
                      ++.+|+.+..+       ..+.++|..+++-...-+....  .+..+.. + ..+|+.+. +        ..+.+||.  
T Consensus       148 ~~~~~vs~~~d-------~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~-d--------~~V~v~D~~~  209 (543)
T 1nir_A          148 PNLFSVTLRDA-------GQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGR-D--------ARIDMIDLWA  209 (543)
T ss_dssp             GGEEEEEEGGG-------TEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEET-T--------SEEEEEETTS
T ss_pred             CCEEEEEEcCC-------CeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECC-C--------CeEEEEECcC
Confidence            56777776532       4678889988765432111111  2223222 3 45676642 1        47899999  


Q ss_pred             CCCccccCeEEcCCCCCCcccccceeEEEE-----CC-EEEEEeeeCCeEEEEECCCCcee-eccc-ccc-------CCC
Q 044903          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW-----KG-KLCLVNVKGAEGAVYDVVANTWD-DMRE-GMV-------RGW  286 (387)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-----~g-~lyv~gg~~~~i~~yD~~~~~W~-~~~~-~~~-------~~~  286 (387)
                      .+.+    -  +..++.....   ...+.-     +| .+|+.+.....+.++|..+.+=. .++. ++.       ...
T Consensus       210 ~t~~----~--~~~i~~g~~p---~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~  280 (543)
T 1nir_A          210 KEPT----K--VAEIKIGIEA---RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  280 (543)
T ss_dssp             SSCE----E--EEEEECCSEE---EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             CCCc----E--EEEEecCCCc---ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCC
Confidence            6654    2  2222222111   222222     45 46666555678999998775432 2221 110       010


Q ss_pred             CCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCce-eEEEeCCe-EEEEecCCceEEEEEecCC
Q 044903          287 RGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR-HAAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       287 ~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~-~~~~~~~~-l~v~gg~~~~i~v~d~~~~  358 (387)
                      +..+++..  ++.+|+....++.|+++|..+.+-..+...+.....+ ....-+|+ +|+.+..++.|.++|..++
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence            11122222  4566766667889999998765322221222111122 22333555 5555445677888887754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.80  E-value=0.61  Score=43.53  Aligned_cols=139  Identities=6%  Similarity=-0.080  Sum_probs=74.5

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|..+++.+.+.......... .-.-+++.+++++...     ....++++|..+.+    -..+.....     
T Consensus       247 ~~i~~~d~~~~~~~~l~~~~~~~~~~-~~spdg~~l~~~s~~~-----g~~~i~~~d~~~~~----~~~l~~~~~-----  311 (415)
T 2hqs_A          247 LNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAFTSDQA-----GRPQVYKVNINGGA----PQRITWEGS-----  311 (415)
T ss_dssp             CEEEEEETTTCCEEECCCCSSCEEEE-EECTTSSEEEEEECTT-----SSCEEEEEETTSSC----CEECCCSSS-----
T ss_pred             ceEEEEECCCCCEEeCcCCCCcccce-EECCCCCEEEEEECCC-----CCcEEEEEECCCCC----EEEEecCCC-----
Confidence            46899999998887775433211111 1112444333333211     12368888998877    555432111     


Q ss_pred             cceeEEE--ECCEEEEEeeeC---CeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCC-C--eEEEEeCC
Q 044903          244 EAIDAVG--WKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENS-C--TLSKYDEV  314 (387)
Q Consensus       244 ~~~~~v~--~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~-~--~v~~yd~~  314 (387)
                       ....+.  -+|+..+++...   ..+.++|+.+.+...+....    ....++ ..+|+..+++..+ +  .|++||.+
T Consensus       312 -~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          312 -QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF----LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             -EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS----SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             -cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC----CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence             111222  356544443332   57899999988877665321    112223 2345544444333 3  69999998


Q ss_pred             CCceEEcc
Q 044903          315 MDDWKEVV  322 (387)
Q Consensus       315 ~~~W~~v~  322 (387)
                      ++....+.
T Consensus       387 g~~~~~l~  394 (415)
T 2hqs_A          387 GRFKARLP  394 (415)
T ss_dssp             SCCEEECC
T ss_pred             CCcEEEee
Confidence            77666554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.79  E-value=1.6  Score=42.53  Aligned_cols=268  Identities=10%  Similarity=-0.048  Sum_probs=127.9

Q ss_pred             CCChHHHHHHHhhhcC-------hhhHHHhhHhhhhhcc------CCCC--CCcceEEEeecCCCCCCCCCeEEEEEeCC
Q 044903           44 PGLPDHIAHLCLSHVH-------PSILHNVCHSWRRLIY------SPSF--PPFLSLYALFSPKSNSSSTPIHLFTFDPV  108 (387)
Q Consensus        44 ~~LP~dl~~~iL~rLP-------~~~~r~Vck~W~~li~------s~~f--~~~~~l~~~~~~~~~~~~~~~~~~~~d~~  108 (387)
                      ..|.++=+..|.+.|-       ...+..+.+.|..+..      .+.+  .+--.+|+...       ....+.++|..
T Consensus        95 ~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~p~~~~~vs~~-------~d~~V~v~D~~  167 (543)
T 1nir_A           95 GELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLR-------DAGQIALVDGD  167 (543)
T ss_dssp             TSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCSSCCSCCCGGGEEEEEEG-------GGTEEEEEETT
T ss_pred             cCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCcccccccCCCCEEEEEEc-------CCCeEEEEECC
Confidence            4577777777766654       2234456666665541      1111  11123444432       23456778887


Q ss_pred             CCCcccCCCCCCCCCccccccCCCccccccceeEEE-eCC-EEEEEcCccCCCCCCCCccEEEeC--CCCceeeCCCCCC
Q 044903          109 SSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LSG-KLILLAATTHNFNPALTRPLIFDP--ICRTWTFGPELVT  184 (387)
Q Consensus       109 ~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~vydp--~t~~W~~l~~~~~  184 (387)
                      +.+-..  .++..               ...+.++. -++ .+|+.+.     .   +.+.+||.  .|.+-..  .++.
T Consensus       168 t~~~~~--~i~~g---------------~~~~~v~~spdg~~l~v~~~-----d---~~V~v~D~~~~t~~~~~--~i~~  220 (543)
T 1nir_A          168 SKKIVK--VIDTG---------------YAVHISRMSASGRYLLVIGR-----D---ARIDMIDLWAKEPTKVA--EIKI  220 (543)
T ss_dssp             TCCEEE--EEECS---------------TTEEEEEECTTSCEEEEEET-----T---SEEEEEETTSSSCEEEE--EEEC
T ss_pred             CceEEE--EEecC---------------cccceEEECCCCCEEEEECC-----C---CeEEEEECcCCCCcEEE--EEec
Confidence            764321  11110               00133333 344 4555542     1   57899999  6654322  2222


Q ss_pred             CceeeeEEee-----CC-EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCC--CC--ccccc-ceeEEEE--
Q 044903          185 PRRWCAAGYS-----RG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK--DG--RFSRE-AIDAVGW--  251 (387)
Q Consensus       185 ~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~--~~--~~~~~-~~~~v~~--  251 (387)
                      ...-...+..     ++ .+|+.+-..        ..+.++|..+.++   -..++...  ..  .+... ...++..  
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~--------~~v~v~D~~t~~~---~~~i~~~g~~~~~~~~~~~~~v~~i~~s~  289 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWP--------PQFAIMDGETLEP---KQIVSTRGMTVDTQTYHPEPRVAAIIASH  289 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEES--------SEEEEEETTTCCE---EEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccC--------CeEEEEecccccc---ceeecccCcccCccccccCCceEEEEECC
Confidence            2222222222     34 566654322        3678889887762   11221100  00  00000 0122222  


Q ss_pred             -CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCe-EEEEeCCCCeEEEEeCCCCceEEccc---cc
Q 044903          252 -KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEV-LYGIDENSCTLSKYDEVMDDWKEVVK---SD  325 (387)
Q Consensus       252 -~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~-ly~~g~~~~~v~~yd~~~~~W~~v~~---~~  325 (387)
                       ++.+|+.......+.++|..+..-..+.. +..+..-..++ --+|+ +|+....++.|.+||.++.+-.....   .|
T Consensus       290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p  368 (543)
T 1nir_A          290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTS-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  368 (543)
T ss_dssp             SSSEEEEEETTTTEEEEEECTTSSSCEEEE-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred             CCCEEEEEECCCCeEEEEEecCCCcceeEE-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence             34555554444789999987643211111 11111111222 22444 66665567889999999886544322   12


Q ss_pred             cccCceeEEEe-CCeEEEEec-CCceEEEEEecC
Q 044903          326 LLKGARHAAAG-GGRVCAVCE-NGGGIVVVDVKA  357 (387)
Q Consensus       326 ~~~~~~~~~~~-~~~l~v~gg-~~~~i~v~d~~~  357 (387)
                      ........+.- ++.+|+.+. ++..|.+||..+
T Consensus       369 h~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          369 HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence            22122222222 478888865 458899999985

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.74  E-value=1.9  Score=43.19  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=37.9

Q ss_pred             CeEEEEeCCCC--ceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCC
Q 044903          306 CTLSKYDEVMD--DWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLG  371 (387)
Q Consensus       306 ~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~  371 (387)
                      +.|..+|+++.  .|+.-...+...   ......+.++++|..++.+.++|..++  -.+|++.++.+
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~---g~~~~~g~~v~~g~~dg~l~a~D~~tG--~~lw~~~~~~~  519 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNG---GTLTTAGNVVFQGTADGRLVAYHAATG--EKLWEAPTGTG  519 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSC
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcC---cceEeCCCEEEEECCCCcEEEEECCCC--ceeeeeeCCCC
Confidence            56999999875  577633222221   223344444555667889999998843  35788866654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.71  E-value=1.1  Score=40.23  Aligned_cols=179  Identities=9%  Similarity=0.021  Sum_probs=88.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++..++.|+.+       ..+.+||..+.+-.............+.+. -++.+++.|+.+.        .+.+||..+.
T Consensus       138 ~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg--------~i~iwd~~~~  202 (343)
T 3lrv_A          138 NTEYFIWADNR-------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG--------ILDVYNLSSP  202 (343)
T ss_dssp             -CCEEEEEETT-------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS--------CEEEEESSCT
T ss_pred             CCCEEEEEeCC-------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC--------EEEEEECCCC
Confidence            45566666532       357889988776543221111111112222 2567777776543        7899999887


Q ss_pred             ccccCeE--EcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCce-eeccccc-c-CCCCCcEEEEe-CC
Q 044903          225 EKNSRWE--KTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTW-DDMREGM-V-RGWRGPVAAMD-EE  296 (387)
Q Consensus       225 ~~~~~W~--~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~-~-~~~~~~~~~~~-~g  296 (387)
                      +    -.  .+..-..     .....+.+  +|...+.++. ..+.+||+.+..= ..+.... . ......+++.. ++
T Consensus       203 ~----~~~~~~~~~h~-----~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          203 D----QASSRFPVDEE-----AKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             T----SCCEECCCCTT-----SCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred             C----CCccEEeccCC-----CCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence            6    22  2221011     11223333  5666666664 4899999976532 1111100 0 00001123332 45


Q ss_pred             eEEEEeCC-CCeEEEEeC--CCCceEEc----ccccc---ccCceeEEEeCCeEEEEecCCce
Q 044903          297 VLYGIDEN-SCTLSKYDE--VMDDWKEV----VKSDL---LKGARHAAAGGGRVCAVCENGGG  349 (387)
Q Consensus       297 ~ly~~g~~-~~~v~~yd~--~~~~W~~v----~~~~~---~~~~~~~~~~~~~l~v~gg~~~~  349 (387)
                      +..+.++. ++.+.+|+.  ..+.|...    ....+   ......+...++.+.++-..+..
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~  335 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS  335 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred             CEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence            55555443 777888876  55679871    11111   11134445567777766544433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.71  E-value=0.0082  Score=55.72  Aligned_cols=185  Identities=12%  Similarity=0.049  Sum_probs=79.7

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.+|+.+. +       ..++.+|..|.  .|+.-.  .  ......+..++++|+.++.+.        .+.++|..
T Consensus         8 ~~~~v~~gs~-d-------g~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~dg--------~l~a~d~~   67 (369)
T 2hz6_A            8 PETLLFVSTL-D-------GSLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPNDG--------SLYTLGSK   67 (369)
T ss_dssp             CTTEEEEEET-T-------SEEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTTTC--------CEEEC---
T ss_pred             eCCEEEEEcC-C-------CEEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCCCC--------EEEEEECC
Confidence            4556665432 1       35788898877  466532  1  111223345667777764332        57888987


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccccccCCCCCcEEEEeCCeEEE
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYG  300 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~  300 (387)
                      +++..  |+.....+...   ....++..++.+|+ |.....+.++|++++  .|+.-.....      ..+..++.||+
T Consensus        68 tG~~~--w~~~~~~~~~~---~~sp~~~~~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~~~~~------~~~p~~~~v~~  135 (369)
T 2hz6_A           68 NNEGL--TKLPFTIPELV---QASPCRSSDGILYM-GKKQDIWYVIDLLTGEKQQTLSSAFAD------SLSPSTSLLYL  135 (369)
T ss_dssp             --CCS--EECSCCHHHHH---TTCSCC-----CCC-CEEEEEEEEECCC----------------------------EEE
T ss_pred             CCcee--eeeeccCcccc---ccCceEecCCEEEE-EeCCCEEEEEECCCCcEEEEecCCCcc------cccccCCEEEE
Confidence            77644  65422111100   00111124666664 333347889999865  5765332111      11114566665


Q ss_pred             EeCCCCeEEEEeCCCC--ceEEccccccccCceeEE---EeCCeEEEEecCCceEEEEEecCCCCCceeEEcC
Q 044903          301 IDENSCTLSKYDEVMD--DWKEVVKSDLLKGARHAA---AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDT  368 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~---~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~  368 (387)
                      . ..++.++.||+++.  .|+.-...  . ....+.   ..++.+|+. ..++.++.+|..++  ...|+...
T Consensus       136 ~-~~dg~v~a~d~~tG~~~W~~~~~~--~-~~~~~~~~~~~~~~v~~~-~~dg~v~a~d~~tG--~~~W~~~~  201 (369)
T 2hz6_A          136 G-RTEYTITMYDTKTRELRWNATYFD--Y-AASLPEDDVDYKMSHFVS-NGDGLVVTVDSESG--DVLWIQNY  201 (369)
T ss_dssp             E-EEEEEEECCCSSSSSCCCEEEEEE--E-CCBCCCCCTTCCCCEEEE-ETSCEEEEECTTTC--CEEEEEEC
T ss_pred             E-ecCCEEEEEECCCCCEEEeEeccc--c-cCccccCCccccceEEEE-CCCCEEEEEECCCC--cEEEEecC
Confidence            4 34678999998765  48753211  0 001010   123566654 45678899998743  35688743

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.70  E-value=1.3  Score=44.10  Aligned_cols=182  Identities=11%  Similarity=0.059  Sum_probs=91.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEe--eCCE-EEEEecCCCCCCCCCCceEEEEeCCCC-ccccCeEEcCCCCCC
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY--SRGA-VYVASGIGSQFSSDVAKSVEKWDLMNG-EKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~v~vyd~~t~-~~~~~W~~~~~~~~~  239 (387)
                      ..++++|..+.+-..+..............  -+++ |++.. .+.   ......+.++|..+. .    ...+......
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~---~~~~~~v~~~d~~~g~~----~~~~~~~~~~  306 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNR---AQNECKVNAYDAETGRF----VRTLFVETDK  306 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECT---TSCEEEEEEEETTTCCE----EEEEEEEECS
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE-eCC---CCCeeEEEEEECCCCce----eeEEEEccCC
Confidence            568999999988766543221111222222  2454 54433 222   122347888999888 5    5554311111


Q ss_pred             ccc-ccceeEEEE--CCEEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcE-EEE--eCCeEEEEeCCCC----e
Q 044903          240 RFS-REAIDAVGW--KGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV-AAM--DEEVLYGIDENSC----T  307 (387)
Q Consensus       240 ~~~-~~~~~~v~~--~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~-~~~--~~g~ly~~g~~~~----~  307 (387)
                      ... ........-  +|++++.+..+  ..++.+|......+.+...   .+.... .+.  .++.||+.+..++    .
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~---~~~v~~~~~~spdg~~l~~~~~~~~~~~~~  383 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG---EWEVTNFAGFDPKGTRLYFESTEASPLERH  383 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS---SSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred             CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC---CeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence            000 000112222  77866555443  5677777666666666432   111111 222  2346777765544    6


Q ss_pred             EEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCC----ceEEEEEecCC
Q 044903          308 LSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG----GGIVVVDVKAA  358 (387)
Q Consensus       308 v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~----~~i~v~d~~~~  358 (387)
                      |+.+|.++...+.+......  ......-+|+.+++...+    ..++++|..++
T Consensus       384 l~~~d~~~~~~~~l~~~~~~--~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          384 FYCIDIKGGKTKDLTPESGM--HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             EEEEETTCCCCEESCCSSSE--EEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             EEEEEcCCCCceeccCCCce--EEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            88899988776655421111  112233456655554322    45888887644

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.67  E-value=0.69  Score=43.00  Aligned_cols=149  Identities=10%  Similarity=0.030  Sum_probs=77.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++.+++.|+.+       ..+.+||..+.+-...-..+.......+..+  +++.++.|+.+.        .+.+||..+
T Consensus       181 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~  245 (437)
T 3gre_A          181 EKSLLVALTNL-------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG--------IIDIWDIRF  245 (437)
T ss_dssp             SCEEEEEEETT-------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS--------CEEEEETTT
T ss_pred             CCCEEEEEeCC-------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC--------eEEEEEcCC
Confidence            35666666532       4678999987654331111101111122222  566667776543        688999988


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEE------ECCEEEEEeeeCCeEEEEECCCCceeec-cc--------cc-cC---
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVG------WKGKLCLVNVKGAEGAVYDVVANTWDDM-RE--------GM-VR---  284 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~------~~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~--------~~-~~---  284 (387)
                      .+    ....-..+...    ....+.      -++.+.+.|+.+..+.+||..+.+-... ..        .+ +.   
T Consensus       246 ~~----~~~~~~~~~~~----~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (437)
T 3gre_A          246 NV----LIRSWSFGDHA----PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG  317 (437)
T ss_dssp             TE----EEEEEBCTTCE----EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred             cc----EEEEEecCCCC----ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence            76    33221111110    011111      1344555555557789999876542111 00        00 00   


Q ss_pred             -----------CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 044903          285 -----------GWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD  317 (387)
Q Consensus       285 -----------~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~  317 (387)
                                 ...-.+++..++++++.++.++.|.+||..+.+
T Consensus       318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          318 LEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred             cccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence                       000123445577788888889999999987654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.64  E-value=1.9  Score=42.40  Aligned_cols=206  Identities=14%  Similarity=0.075  Sum_probs=113.9

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCc--eeeCCCCCCC---c---eeeeEEeeCCEEEEEecCCCCCCCCCC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTP---R---RWCAAGYSRGAVYVASGIGSQFSSDVA  213 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~--W~~l~~~~~~---r---~~~~~~~~~~~iyv~GG~~~~~~~~~~  213 (387)
                      .++.++.||+....        ..++.+|..|.+  |+.-...+..   .   ...+.++.+++||+...         .
T Consensus        64 P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~---------d  126 (582)
T 1flg_A           64 AIVSDGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL---------D  126 (582)
T ss_dssp             CEEETTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET---------T
T ss_pred             cEEECCEEEEEcCC--------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC---------C
Confidence            34578999987652        238889988774  8774332211   1   11234567889988532         1


Q ss_pred             ceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC------EEEEEee-----eCCeEEEEECCCC--ceeeccc
Q 044903          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG------KLCLVNV-----KGAEGAVYDVVAN--TWDDMRE  280 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g------~lyv~gg-----~~~~i~~yD~~~~--~W~~~~~  280 (387)
                      ..+..+|..|++..  |+.-..-+...+.. ....++.++      .+|+-..     ....+.+||.++.  .|+.-..
T Consensus       127 g~l~AlD~~TG~~~--W~~~~~~~~~~~~~-~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~  203 (582)
T 1flg_A          127 ASVVALNKNTGKVV--WKKKFADHGAGYTM-TGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV  203 (582)
T ss_dssp             TEEEEEESSSCCEE--EEEECSCGGGTCBC-CSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred             CEEEEEECCCCCEE--eeecCCCCCcCccc-ccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCC
Confidence            26889999999866  98643221111110 122344566      7766432     1357999999876  5864221


Q ss_pred             ccc---------------------------------------CCCCCcEEEEeCCeEEEEeCC-----------------
Q 044903          281 GMV---------------------------------------RGWRGPVAAMDEEVLYGIDEN-----------------  304 (387)
Q Consensus       281 ~~~---------------------------------------~~~~~~~~~~~~g~ly~~g~~-----------------  304 (387)
                      ...                                       ..|...+.-...+.+|+-.++                 
T Consensus       204 ~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~  283 (582)
T 1flg_A          204 EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPH  283 (582)
T ss_dssp             TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCST
T ss_pred             ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCccc
Confidence            000                                       001111222235778876542                 


Q ss_pred             --C----CeEEEEeCCCC--ceEEcccccc---cc--CceeEEE---eCC---eEEEEecCCceEEEEEecCCCCCceeE
Q 044903          305 --S----CTLSKYDEVMD--DWKEVVKSDL---LK--GARHAAA---GGG---RVCAVCENGGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       305 --~----~~v~~yd~~~~--~W~~v~~~~~---~~--~~~~~~~---~~~---~l~v~gg~~~~i~v~d~~~~~~~~~W~  365 (387)
                        +    +.|+.+|+++.  .|+.-.....   ..  ....++.   .+|   ++++.+..++.++++|..++  ..+|+
T Consensus       284 ~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG--~~lw~  361 (582)
T 1flg_A          284 DYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG--KLQNA  361 (582)
T ss_dssp             TCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC--CEEEE
T ss_pred             ccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC--CEecc
Confidence              1    47999998765  5765322111   11  1222333   356   46667667889999998743  34687


Q ss_pred             EcCC
Q 044903          366 VDTP  369 (387)
Q Consensus       366 ~~~~  369 (387)
                      ....
T Consensus       362 ~~~~  365 (582)
T 1flg_A          362 FPFV  365 (582)
T ss_dssp             EESS
T ss_pred             cccc
Confidence            6443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=95.62  E-value=0.54  Score=47.12  Aligned_cols=143  Identities=13%  Similarity=0.157  Sum_probs=79.7

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEE-cCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK-TGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~-~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ++++.+.|+.+.        .+.+||..+.+    -.. +.....      ...++.  -++...+.++.+..+.++|..
T Consensus       441 ~g~~l~sgs~Dg--------~v~vwd~~~~~----~~~~~~~h~~------~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          441 DGQFALSGSWDG--------ELRLWDLAAGV----STRRFVGHTK------DVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             TSSEEEEEETTS--------EEEEEETTTTE----EEEEEECCSS------CEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCEEEEEeCCC--------cEEEEECCCCc----ceeEEeCCCC------CEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            566777776644        78899988775    221 111110      122222  256666667777888999876


Q ss_pred             CCceeeccccccCCCC--CcEEEEe-CC--eEEEEeCCCCeEEEEeCCCCceEEccccccccCcee--EEEeCCeEEEEe
Q 044903          272 ANTWDDMREGMVRGWR--GPVAAMD-EE--VLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVC  344 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~--~~~~~~~-~g--~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~~~l~v~g  344 (387)
                      ...=..+... ..+..  -.+++.. ++  .+++.++.++.|.+||..+.+-..  ....+.....  ....++++++.|
T Consensus       503 ~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~--~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          503 GECKYTISEG-GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             SCEEEEECSS-TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCcceeeccC-CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE--EEcCCCCCEEEEEEeCCCCEEEEE
Confidence            5422222110 11111  1122222 22  356666778999999998764332  2222333322  233478888888


Q ss_pred             cCCceEEEEEecCC
Q 044903          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~v~d~~~~  358 (387)
                      +.++.|.+||+.+.
T Consensus       580 ~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          580 GKDGVVLLWDLAEG  593 (694)
T ss_dssp             ETTSBCEEEETTTT
T ss_pred             eCCCeEEEEECCCC
Confidence            88889999998754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.57  E-value=0.7  Score=45.65  Aligned_cols=122  Identities=12%  Similarity=0.116  Sum_probs=72.2

Q ss_pred             eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeC-CCCccccCeEEcCCCCCCcc---cc--cceeEEE--ECCE----EE
Q 044903          189 CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL-MNGEKNSRWEKTGELKDGRF---SR--EAIDAVG--WKGK----LC  256 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~-~t~~~~~~W~~~~~~~~~~~---~~--~~~~~v~--~~g~----ly  256 (387)
                      .+.++.++.||+....        ...+..+|. .+++..  |+.-...+....   ..  .....++  .+++    ||
T Consensus        56 ~tP~v~~g~vyv~~~~--------~~~v~AlD~~~tG~~l--W~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~  125 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSF--------PNNTFALGLDDPGTIL--WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALIL  125 (599)
T ss_dssp             SCCEEETTEEEEECST--------TTCEEEEETTCTTSEE--EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEE
T ss_pred             eccEEECCEEEEEeCC--------CCEEEEEeCCCCCcEE--EEECCCCCccccccccccccccceEEEecCCcceeEEE
Confidence            3456679999998642        125789999 888866  987654332110   00  0012234  5777    88


Q ss_pred             EEeeeCCeEEEEECCCC--ceeeccccccCCC-CCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCC--ceEEc
Q 044903          257 LVNVKGAEGAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDEEVLYGIDE-----NSCTLSKYDEVMD--DWKEV  321 (387)
Q Consensus       257 v~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~g~ly~~g~-----~~~~v~~yd~~~~--~W~~v  321 (387)
                      +... ...+.++|.++.  .|+.-......+. ...+.++.+++||+-..     .++.|+.||.++.  .|+.-
T Consensus       126 v~t~-dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          126 KTQL-DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EECT-TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEcC-CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            7643 347999998876  5985432111111 11223345788876542     3578999999865  48754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.57  E-value=1.2  Score=39.50  Aligned_cols=182  Identities=10%  Similarity=0.121  Sum_probs=96.4

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCC-CCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPI-CRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~-t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.+|+...        ...++.||+. ...|+.-.+.+.   ..+.+.. ++.+|+.. .+        ..+..||+.
T Consensus       106 ~~~~l~v~t~--------~~~l~~~d~~g~~~~~~~~~~~~---~~~~~~~~~g~l~vgt-~~--------~~l~~~d~~  165 (330)
T 3hxj_A          106 FEDILYVTSM--------DGHLYAINTDGTEKWRFKTKKAI---YATPIVSEDGTIYVGS-ND--------NYLYAINPD  165 (330)
T ss_dssp             ETTEEEEECT--------TSEEEEECTTSCEEEEEECSSCC---CSCCEECTTSCEEEEC-TT--------SEEEEECTT
T ss_pred             ECCEEEEEec--------CCEEEEEcCCCCEEEEEcCCCce---eeeeEEcCCCEEEEEc-CC--------CEEEEECCC
Confidence            3788887532        1357888887 335665332211   1112233 67777742 11        257888887


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeeeCCeEEEEECCC-CceeeccccccCCCCCcEEEEe-CCeEE
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVA-NTWDDMREGMVRGWRGPVAAMD-EEVLY  299 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~-~~W~~~~~~~~~~~~~~~~~~~-~g~ly  299 (387)
                       ++..  |....+.  ...    ...+. -+|.+|+.+   ..+.+||... ..|+.....   . ...+++.. +|.||
T Consensus       166 -g~~~--~~~~~~~--~~~----~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~---~-~~~~~~~~~~g~l~  229 (330)
T 3hxj_A          166 -GTEK--WRFKTND--AIT----SAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAGY---W-TVTRPAISEDGTIY  229 (330)
T ss_dssp             -SCEE--EEEECSS--CCC----SCCEECTTCCEEEES---SSEEEECTTSCEEEEECCSS---C-CCSCCEECTTSCEE
T ss_pred             -CCEe--EEEecCC--Cce----eeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccCC---c-ceeceEECCCCeEE
Confidence             4422  6654321  111    22223 377888766   5789999542 367654321   1 11223333 45788


Q ss_pred             EEeCCCCeEEEEeCCCCc-eEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCC
Q 044903          300 GIDENSCTLSKYDEVMDD-WKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTP  369 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~~-W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~  369 (387)
                      +.. ..+.+++||++.+. |..-.. .... ...+..-+|.||+. ..++.++.+|.+..   ..|....+
T Consensus       230 v~t-~~~gl~~~~~~g~~~~~~~~~-~~~~-~~~~~~~~g~l~v~-t~~ggl~~~d~~g~---~~~~~~~~  293 (330)
T 3hxj_A          230 VTS-LDGHLYAINPDGTEKWRFKTG-KRIE-SSPVIGNTDTIYFG-SYDGHLYAINPDGT---EKWNFETG  293 (330)
T ss_dssp             EEE-TTTEEEEECTTSCEEEEEECS-SCCC-SCCEECTTSCEEEE-CTTCEEEEECTTSC---EEEEEECS
T ss_pred             EEc-CCCeEEEECCCCCEeEEeeCC-CCcc-ccceEcCCCeEEEe-cCCCCEEEECCCCc---EEEEEEcC
Confidence            765 36789999876554 443221 1111 11223336788876 44567888886422   46776543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.48  E-value=0.95  Score=40.68  Aligned_cols=144  Identities=10%  Similarity=-0.004  Sum_probs=80.6

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeeeCCeEEEEECCCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      +++||++--.        ...+..+++...... .+.....+..+.     ..++- .++.||+.......++++|++..
T Consensus        46 ~~~lyw~D~~--------~~~I~r~~~~g~~~~-~~~~~~~l~~p~-----glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           46 HGLIYWSDVS--------EEAIKRTEFNKTESV-QNVVVSGLLSPD-----GLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             GTEEEEEETT--------TTEEEEEETTSSSCC-CEEEEECCSCCC-----EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCEEEEEECC--------CCcEEEEEccCCCce-EEEEcCCCCCcc-----EEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            5789988432        236788887665200 022222222211     12222 47899998665678999998754


Q ss_pred             ceeeccccccCCCCCc-EEEE--eCCeEEEEeC-CCCeEEEEeCCCCceEEccccccccCceeEEEe--CCeEEEEecCC
Q 044903          274 TWDDMREGMVRGWRGP-VAAM--DEEVLYGIDE-NSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENG  347 (387)
Q Consensus       274 ~W~~~~~~~~~~~~~~-~~~~--~~g~ly~~g~-~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~~~l~v~gg~~  347 (387)
                      .=+.+..   .....+ .+++  .+|.||+.+. ..+.|++++++...=+.+... ....+.+++..  +++||+.-...
T Consensus       112 ~~~~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          112 LRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             SCEEEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC-CCCCccEEEEeccCCEEEEEECCC
Confidence            3232211   111122 3343  3589999983 457899999876533333211 12233344443  67888886666


Q ss_pred             ceEEEEEec
Q 044903          348 GGIVVVDVK  356 (387)
Q Consensus       348 ~~i~v~d~~  356 (387)
                      ..|+++|..
T Consensus       188 ~~I~~~d~d  196 (318)
T 3sov_A          188 NFIHKSNLD  196 (318)
T ss_dssp             TEEEEEETT
T ss_pred             CEEEEEcCC
Confidence            777777776

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.46  E-value=0.94  Score=42.65  Aligned_cols=186  Identities=9%  Similarity=0.002  Sum_probs=99.5

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCC-EEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++.||+.--.        ..+.++|+.+++.+.+.+ ...+....+..-++ .|||+...+.    .....+..++....
T Consensus       149 ~g~Lyv~d~~--------~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~----~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          149 HNHLYLVGEQ--------HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNN----NDRPNNYILTRESG  215 (430)
T ss_dssp             EEEEEEEEBT--------EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSC----TTSEEEEEEEGGGT
T ss_pred             CCeEEEEeCC--------CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCC----cccceEEEEeCCCc
Confidence            4678887431        678999999988877643 11222222222234 5999875322    12224556665432


Q ss_pred             ccccCeE---EcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CCe-
Q 044903          225 EKNSRWE---KTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEV-  297 (387)
Q Consensus       225 ~~~~~W~---~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~-  297 (387)
                           |.   .++.+..+      +..++.  +|.||+..-....+.+||+....-..+.......+. ..+++. +|+ 
T Consensus       216 -----~~~~~~l~~~~~p------~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P-~gia~~pdG~~  283 (430)
T 3tc9_A          216 -----FKVITELTKGQNC------NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE-FHIQFHPSGNY  283 (430)
T ss_dssp             -----SCSEEEEEECSSC------CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC-EEEEECTTSSE
T ss_pred             -----eeeeeeeccCCCc------eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc-eeEEEcCCCCE
Confidence                 33   33322222      223332  688998865557899999987654322211111111 123332 344 


Q ss_pred             EEEEeCCCCeEEEEeCCC--CceE---Ecccc-------------ccccCce-eEEEe---------CCeEEEEecCCce
Q 044903          298 LYGIDENSCTLSKYDEVM--DDWK---EVVKS-------------DLLKGAR-HAAAG---------GGRVCAVCENGGG  349 (387)
Q Consensus       298 ly~~g~~~~~v~~yd~~~--~~W~---~v~~~-------------~~~~~~~-~~~~~---------~~~l~v~gg~~~~  349 (387)
                      ||+.......|+++|.+.  ....   .+...             ..+..+. .++..         +|.|||.-..++.
T Consensus       284 lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~  363 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC  363 (430)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred             EEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence            999988788899977653  2221   11111             0112233 34432         3688888666677


Q ss_pred             EEEEEec
Q 044903          350 IVVVDVK  356 (387)
Q Consensus       350 i~v~d~~  356 (387)
                      |..+|+.
T Consensus       364 I~~i~~~  370 (430)
T 3tc9_A          364 IRILTPQ  370 (430)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            8888754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.41  E-value=1.2  Score=44.87  Aligned_cols=120  Identities=14%  Similarity=0.187  Sum_probs=73.3

Q ss_pred             eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc-----ccceeEEEECCEEEEEeeeCCe
Q 044903          190 AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS-----REAIDAVGWKGKLCLVNVKGAE  264 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~-----~~~~~~v~~~g~lyv~gg~~~~  264 (387)
                      +.++.+++||+....         ..+..+|..|++..  |+.-...+.....     ......++.+++||+.+. ...
T Consensus        65 ~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-dg~  132 (689)
T 1yiq_A           65 TPIVVDGVMYTTGPF---------SVVYALDARDGRLI--WKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-DGR  132 (689)
T ss_dssp             CCEEETTEEEEECGG---------GCEEEEETTTCCEE--EEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TSE
T ss_pred             cCEEECCEEEEEcCC---------CeEEEEECCCCcee--EEEcCCCCccccccccccCCCCccEEECCEEEEEcc-CCE
Confidence            345679999997542         25889999998866  9875533311100     001223567899987643 358


Q ss_pred             EEEEECCCC--ceeeccc-cccCCC-CCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCCc--eEEc
Q 044903          265 GAVYDVVAN--TWDDMRE-GMVRGW-RGPVAAMDEEVLYGIDE-----NSCTLSKYDEVMDD--WKEV  321 (387)
Q Consensus       265 i~~yD~~~~--~W~~~~~-~~~~~~-~~~~~~~~~g~ly~~g~-----~~~~v~~yd~~~~~--W~~v  321 (387)
                      +.++|.+++  .|+.... ...... ...+.++.++.+|+-..     .++.|+.||.++.+  |+.-
T Consensus       133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            999999876  5886532 111111 11233456888887532     24689999998764  8753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.41  E-value=0.93  Score=42.77  Aligned_cols=187  Identities=11%  Similarity=-0.014  Sum_probs=100.3

Q ss_pred             CEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCcc
Q 044903          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~  226 (387)
                      +.||+.-..        ..+.++|+.+++.+.+.. ...+....+..-+++|||+.....    .....+..++..... 
T Consensus       153 g~Lyv~D~~--------~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~----~~~~gv~~~~~~~~~-  218 (433)
T 4hw6_A          153 DDLYWVGQR--------DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSS----DTNTGIYLFTRASGF-  218 (433)
T ss_dssp             CEEEEECBT--------SCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSC----TTSEEEEEECGGGTT-
T ss_pred             CEEEEEeCC--------CCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCC----cccceEEEEECCCCe-
Confidence            789887431        678999999988877644 222222223333556999864321    112234555543321 


Q ss_pred             ccCe-EEcCCCCCCcccccceeEEE-E-CCEEEEEeeeCCeEEEEECCCCce-eeccccccCCCCCcEEEEe--CCeEEE
Q 044903          227 NSRW-EKTGELKDGRFSREAIDAVG-W-KGKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAMD--EEVLYG  300 (387)
Q Consensus       227 ~~~W-~~~~~~~~~~~~~~~~~~v~-~-~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~~--~g~ly~  300 (387)
                        .+ ..++.+..+      ...++ - +|.||+.......+..||+.+.+- ..+.......+ ...+++.  ++.||+
T Consensus       219 --~~~~~~~~~~~P------~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~-~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          219 --TERLSLCNARGA------KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGS-NFHIVWHPTGDWAYI  289 (433)
T ss_dssp             --CCEEEEEECSSB------CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSS-CEEEEECTTSSEEEE
T ss_pred             --eccccccccCCC------CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCC-cccEEEeCCCCEEEE
Confidence              01 122222111      22222 2 688998865556899999986654 22211111111 1124432  345999


Q ss_pred             EeCCCCeEEEEeCC--CCceE---Ec-ccc------------ccccCceeEEE----------eCCeEEEEecCCceEEE
Q 044903          301 IDENSCTLSKYDEV--MDDWK---EV-VKS------------DLLKGARHAAA----------GGGRVCAVCENGGGIVV  352 (387)
Q Consensus       301 ~g~~~~~v~~yd~~--~~~W~---~v-~~~------------~~~~~~~~~~~----------~~~~l~v~gg~~~~i~v  352 (387)
                      .......|+++|.+  +....   .+ ...            ..+..+..++.          .+|.|||.-..++.|..
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~  369 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV  369 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence            98777889997754  33321   11 110            01122344444          56789998767788888


Q ss_pred             EEec
Q 044903          353 VDVK  356 (387)
Q Consensus       353 ~d~~  356 (387)
                      +|+.
T Consensus       370 ~~~~  373 (433)
T 4hw6_A          370 LTPE  373 (433)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            8864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.40  E-value=1.4  Score=39.53  Aligned_cols=182  Identities=11%  Similarity=0.030  Sum_probs=90.9

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEE-eCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKW-DLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vy-d~~  222 (387)
                      -++.+|+.+..        ..+++-+-.-.+|+++.... ....+..+.. ++.+|++|..+.         +..- |..
T Consensus       131 ~~~~~~~~~~~--------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~G~---------~~~S~d~g  192 (327)
T 2xbg_A          131 GNGSAEMITNV--------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSSRGS---------FYSTWEPG  192 (327)
T ss_dssp             ETTEEEEEETT--------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEETTSS---------EEEEECTT
T ss_pred             CCCCEEEEeCC--------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEECCCc---------EEEEeCCC
Confidence            46777776641        12344333456899875322 2223333333 456666553221         2221 222


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEE-ECCEEEEEeeeCCeEEEEECC-CCceeecccc-ccCCCCCcEEEEe-CCeE
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVV-ANTWDDMREG-MVRGWRGPVAAMD-EEVL  298 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~-~~~W~~~~~~-~~~~~~~~~~~~~-~g~l  298 (387)
                      -.+    |..+......    .....+. -++.+|+.+..+ .+...+.. -.+|+.+... ++.......++.. ++.+
T Consensus       193 G~t----W~~~~~~~~~----~~~~~~~~~~g~~~~~~~~G-~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~  263 (327)
T 2xbg_A          193 QTA----WEPHNRTTSR----RLHNMGFTPDGRLWMIVNGG-KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV  263 (327)
T ss_dssp             CSS----CEEEECCSSS----CEEEEEECTTSCEEEEETTT-EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred             CCc----eeECCCCCCC----ccceeEECCCCCEEEEeCCc-eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence            345    9988532211    1122222 357788775433 34444333 4589987642 2222111233332 5688


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEcccc-ccccCceeEEE-eCCeEEEEecCCceEEEEEe
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGARHAAA-GGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~~-~~~~l~v~gg~~~~i~v~d~  355 (387)
                      |+.+. .+.+++-.-...+|+.+... +.....+.++. -++.++++ |.++.++.++.
T Consensus       264 ~~~g~-~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~-G~~G~i~~~~~  320 (327)
T 2xbg_A          264 WLAGG-AGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL-GQKGILLRYVT  320 (327)
T ss_dssp             EEEES-TTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEE-CSTTEEEEECC
T ss_pred             EEEeC-CCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEE-cCCceEEEEcC
Confidence            88875 56665544456899998743 22222233333 45666666 55566776665

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.39  E-value=0.29  Score=47.46  Aligned_cols=136  Identities=7%  Similarity=0.016  Sum_probs=74.6

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +++.++.++.+.        .+.+||.....    -..+.....+      ..++.  -++++.+.++.+..+.+||...
T Consensus       437 d~~~l~~~~~d~--------~v~~w~~~~~~----~~~~~~~~~~------v~~~~~spd~~~las~~~d~~i~iw~~~~  498 (577)
T 2ymu_A          437 DDQTIASASDDK--------TVKLWNRNGQL----LQTLTGHSSS------VRGVAFSPDGQTIASASDDKTVKLWNRNG  498 (577)
T ss_dssp             TSSEEEEEETTS--------EEEEEETTSCE----EEEEECCSSC------EEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             CCCEEEEEcCCC--------EEEEEECCCCE----EEEEcCCCCC------EEEEEEcCCCCEEEEEeCCCEEEEEcCCC
Confidence            455666655433        67788865444    3333221111      22222  3677777777777889999654


Q ss_pred             CceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCce--eEEEeCCeEEEEecCCce
Q 044903          273 NTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAVCENGGG  349 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~~~l~v~gg~~~~  349 (387)
                      +.-..+..   ....-.+++. .++++.+.++.++.|.+||...+.-..   ...+....  ..+..+|+.++.++.++.
T Consensus       499 ~~~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~---~~~h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          499 QLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             CEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE---EECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CEEEEEeC---CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEE---EcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            33222221   0101112222 356666777788999999976543332   22222222  233457787788777888


Q ss_pred             EEEEE
Q 044903          350 IVVVD  354 (387)
Q Consensus       350 i~v~d  354 (387)
                      |.+||
T Consensus       573 i~~Wd  577 (577)
T 2ymu_A          573 VKLWN  577 (577)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            88886

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.71  Score=42.94  Aligned_cols=148  Identities=11%  Similarity=0.023  Sum_probs=82.7

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++.+++.|+.+.        .+.+||..+.+    -...-..+.   ......++.+  ++.+.+.|+....+.+||+.+
T Consensus       181 ~~~~l~~~~~d~--------~i~iwd~~~~~----~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          181 EKSLLVALTNLS--------RVIIFDIRTLE----RLQIIENSP---RHGAVSSICIDEECCVLILGTTRGIIDIWDIRF  245 (437)
T ss_dssp             SCEEEEEEETTS--------EEEEEETTTCC----EEEEEECCG---GGCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEeCCC--------eEEEEeCCCCe----eeEEEccCC---CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence            366677766543        78999998876    221111100   0011333333  677777777778899999987


Q ss_pred             CceeeccccccCCCCCcEEEE-----eCCeEEEEeCCCCeEEEEeCCCCceEEccc-c----------cc----------
Q 044903          273 NTWDDMREGMVRGWRGPVAAM-----DEEVLYGIDENSCTLSKYDEVMDDWKEVVK-S----------DL----------  326 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-----~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~-~----------~~----------  326 (387)
                      .+....-. ......-.+++.     .++.+.+.++.++.|.+||..+.+-..... .          |.          
T Consensus       246 ~~~~~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (437)
T 3gre_A          246 NVLIRSWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC  324 (437)
T ss_dssp             TEEEEEEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred             ccEEEEEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence            65432110 000000011211     135567777778899999998664222111 0          00          


Q ss_pred             ---ccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          327 ---LKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       327 ---~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                         ... -.++...++++++.|+.++.|.+||+.+.
T Consensus       325 ~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          325 GIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             CCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCG
T ss_pred             ccccCCceEEEEECCceEEEecCCCCeEEEEECCCc
Confidence               000 12334448888888888899999999854

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.32  E-value=1  Score=39.80  Aligned_cols=183  Identities=13%  Similarity=0.035  Sum_probs=92.0

Q ss_pred             CEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCcc
Q 044903          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~  226 (387)
                      +.||+.+..       ...+++|++ +.+.+.+.. +.......+..-++++|++....        ..+..||+. ++ 
T Consensus        57 ~~l~~~d~~-------~~~i~~~~~-~g~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~--------~~v~~~~~~-g~-  117 (305)
T 3dr2_A           57 RTLVWSDLV-------GRRVLGWRE-DGTVDVLLD-ATAFTNGNAVDAQQRLVHCEHGR--------RAITRSDAD-GQ-  117 (305)
T ss_dssp             TEEEEEETT-------TTEEEEEET-TSCEEEEEE-SCSCEEEEEECTTSCEEEEETTT--------TEEEEECTT-SC-
T ss_pred             CEEEEEECC-------CCEEEEEeC-CCCEEEEeC-CCCccceeeECCCCCEEEEECCC--------CEEEEECCC-CC-
Confidence            447776542       246788888 444443321 11111112222357888764321        257778875 55 


Q ss_pred             ccCeEEcCCCCCCc-ccccceeEEEECCEEEEEe----ee-------------CCeEEEEECCCCceeeccccccCCCCC
Q 044903          227 NSRWEKTGELKDGR-FSREAIDAVGWKGKLCLVN----VK-------------GAEGAVYDVVANTWDDMREGMVRGWRG  288 (387)
Q Consensus       227 ~~~W~~~~~~~~~~-~~~~~~~~v~~~g~lyv~g----g~-------------~~~i~~yD~~~~~W~~~~~~~~~~~~~  288 (387)
                         .+.+....... ...-...++.-+|.+|+..    ..             ...++.||+++++.+.+. .+...   
T Consensus       118 ---~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p---  190 (305)
T 3dr2_A          118 ---AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP---  190 (305)
T ss_dssp             ---EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE---
T ss_pred             ---EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC---
Confidence               55443211110 0000112223378899852    11             146889999888777654 22111   


Q ss_pred             cEEEEe-CC-eEEEEeCC-----CCeEEEEeCCCCceEEcccc--ccccCcee-EEEeCCeEEEEecCCceEEEEEecC
Q 044903          289 PVAAMD-EE-VLYGIDEN-----SCTLSKYDEVMDDWKEVVKS--DLLKGARH-AAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       289 ~~~~~~-~g-~ly~~g~~-----~~~v~~yd~~~~~W~~v~~~--~~~~~~~~-~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ..++.. ++ .||+.+..     .+.|++||.+.+........  ........ .+.-+|+||+..  ...+.+||++.
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDG  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--SSEEEEECTTS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--CCcEEEECCCC
Confidence            123332 34 58888754     26899999876643221110  00111122 334567777764  44688888863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.31  E-value=1.3  Score=38.62  Aligned_cols=136  Identities=7%  Similarity=0.040  Sum_probs=72.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCcee--eeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRW--CAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      +.+.+||..|++-.++-.+......  ..+..-+++.++.|+.+.        .+.+||..+++    -.........  
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg--------~v~iw~~~~~~----~~~~~~~h~~--  110 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA--------EVQLWDVQQQK----RLRNMTSHSA--  110 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS--------EEEEEETTTTE----EEEEEECCSS--
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC--------cEEEeecCCce----eEEEecCccc--
Confidence            4688999999876654332222111  112222567777777644        78889998877    3222111111  


Q ss_pred             cccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903          242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD  316 (387)
Q Consensus       242 ~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~  316 (387)
                         .......++.+.+.++....+..++..+.......................++.++.++.++.|.+||..+.
T Consensus       111 ---~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          111 ---RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             ---CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             ---eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence               133444556665666555666777765554332211001111111122334566667777899999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=95.25  E-value=0.48  Score=42.31  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=79.7

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +++..+.|+.+.        .+.+||..+++.   ...+..-..      ...++.+  ++.+.+.|+.+..+.+||...
T Consensus        76 dg~~l~s~s~D~--------~v~~wd~~~~~~---~~~~~~h~~------~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           76 DGAYALSASWDK--------TLRLWDVATGET---YQRFVGHKS------DVMSVDIDKKASMIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             TSSEEEEEETTS--------EEEEEETTTTEE---EEEEECCSS------CEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred             CCCEEEEEeCCC--------EEEEEECCCCCe---eEEEccCCC------cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            556666766544        788999988761   222221111      1222222  566777777778899999875


Q ss_pred             CceeeccccccCCCCCcEEEEe-------CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCce--eEEEeCCeEEEE
Q 044903          273 NTWDDMREGMVRGWRGPVAAMD-------EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAV  343 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~~-------~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~~~l~v~  343 (387)
                      ..-..+..  ... .-..+...       ++.+++.++.++.|.+||..+..-..  .........  .....+++.++.
T Consensus       139 ~~~~~~~~--h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s  213 (319)
T 3frx_A          139 QCLATLLG--HND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIAS  213 (319)
T ss_dssp             CEEEEECC--CSS-CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEE
T ss_pred             CeEEEEec--cCC-cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEE
Confidence            43332221  000 00111111       23456666778999999997653222  222222222  223347888888


Q ss_pred             ecCCceEEEEEecCC
Q 044903          344 CENGGGIVVVDVKAA  358 (387)
Q Consensus       344 gg~~~~i~v~d~~~~  358 (387)
                      |+.++.+.+||..+.
T Consensus       214 ~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          214 AGKDGEIMLWNLAAK  228 (319)
T ss_dssp             EETTCEEEEEETTTT
T ss_pred             EeCCCeEEEEECCCC
Confidence            888899999998754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.22  E-value=2.7  Score=41.66  Aligned_cols=142  Identities=11%  Similarity=0.004  Sum_probs=85.2

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +++||+.....        ..+..+++....    .+.+........    ...++  .+++||+.......|+++|++.
T Consensus        48 ~~~lywtD~~~--------~~I~r~~~~g~~----~~~v~~~g~~~P----~GlAvD~~~~~LY~tD~~~~~I~v~~~dG  111 (628)
T 4a0p_A           48 DNRIYWTDISL--------KTISRAFMNGSA----LEHVVEFGLDYP----EGMAVDWLGKNLYWADTGTNRIEVSKLDG  111 (628)
T ss_dssp             TTEEEEEETTT--------TEEEEEETTSCS----CEEEECSSCSCC----CEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCEEEEEECCC--------CeEEEEECCCCC----cEEEEeCCCCCc----ceEEEEeCCCEEEEEECCCCEEEEEecCC
Confidence            68999985432        367788877655    554432221110    22222  4689999876668899999875


Q ss_pred             CceeeccccccCCCCCc-EEEEe--CCeEEEEe-CCCCeEEEEeCCCCceEEccccccccCceeEEEe--CCeEEEEecC
Q 044903          273 NTWDDMREGMVRGWRGP-VAAMD--EEVLYGID-ENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCEN  346 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~-~~~~~--~g~ly~~g-~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~~~l~v~gg~  346 (387)
                      ..=+.+..   .....+ .+++.  +|.||+.+ +....|++.+++...-+.+..  ....+.+++.-  +++||+.-..
T Consensus       112 ~~~~~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          112 QHRQVLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--NVGRANGLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             TTCEEEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SCSSEEEEEEETTTTEEEEEETT
T ss_pred             CcEEEEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--CCCCcceEEEccccCEEEEEECC
Confidence            43222211   111122 34444  68999998 446789999998776555432  22333444443  6788888666


Q ss_pred             CceEEEEEecC
Q 044903          347 GGGIVVVDVKA  357 (387)
Q Consensus       347 ~~~i~v~d~~~  357 (387)
                      ...|.++|...
T Consensus       187 ~~~I~~~d~dG  197 (628)
T 4a0p_A          187 TNLIESSNMLG  197 (628)
T ss_dssp             TTEEEEEETTS
T ss_pred             CCEEEEEcCCC
Confidence            67788888763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.19  E-value=0.68  Score=40.91  Aligned_cols=134  Identities=14%  Similarity=0.051  Sum_probs=67.0

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECC-EEEEEeeeCCeEEEEECCCCceee-ccccccC--CCCCcE
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTWDD-MREGMVR--GWRGPV  290 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~--~~~~~~  290 (387)
                      .+.++|..+.+    -...-.++..... ....+..-+| .+|+.+.....+.++|+.+.+-.. +......  +.....
T Consensus        12 ~v~~~d~~~~~----~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~   86 (337)
T 1pby_B           12 KLVVIDTEKMA----VDKVITIADAGPT-PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG   86 (337)
T ss_dssp             EEEEEETTTTE----EEEEEECTTCTTC-CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred             eEEEEECCCCc----EEEEEEcCCCCCC-ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence            68889988876    3322222220000 0012222355 677776555789999998765432 2211100  001112


Q ss_pred             EEEe-CC-eEEEEeC-----------CCCeEEEEeCCCCceEEccccccccCceeE-EEeCCe-EEEEecCCceEEEEEe
Q 044903          291 AAMD-EE-VLYGIDE-----------NSCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGGR-VCAVCENGGGIVVVDV  355 (387)
Q Consensus       291 ~~~~-~g-~ly~~g~-----------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~-l~v~gg~~~~i~v~d~  355 (387)
                      ++.. +| .||+...           .++.|.+||.++.+.......+  .....+ ..-+|+ ||+.   +..+.++|+
T Consensus        87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~---~~~i~~~d~  161 (337)
T 1pby_B           87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGL---GRDLHVMDP  161 (337)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEE---SSSEEEEET
T ss_pred             eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEe---CCeEEEEEC
Confidence            3332 34 6777641           3578999999887654332221  112222 233454 5544   456888887


Q ss_pred             cCC
Q 044903          356 KAA  358 (387)
Q Consensus       356 ~~~  358 (387)
                      .+.
T Consensus       162 ~~~  164 (337)
T 1pby_B          162 EAG  164 (337)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.19  E-value=2.9  Score=41.78  Aligned_cols=62  Identities=15%  Similarity=0.253  Sum_probs=39.0

Q ss_pred             CeEEEEeCCCC--ceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEcCCCCc
Q 044903          306 CTLSKYDEVMD--DWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGF  372 (387)
Q Consensus       306 ~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~~~~~~  372 (387)
                      +.|..+|+.+.  .|+.-...+..  ...++..++.||+ |..+..+.++|..++  ...|+...+.+.
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~--~~~~~t~gg~vf~-g~~dg~l~a~d~~tG--~~l~~~~~~~~~  501 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWN--GGTLSTAGNLVFQ-GTAAGQMHAYSADKG--EALWQFEAQSGI  501 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCC--CCEEEETTTEEEE-ECTTSEEEEEETTTC--CEEEEEECSSCC
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCc--CceeEeCCCEEEE-ECCcccchhhhhhcC--hhheEecCCCCc
Confidence            66999999876  48763322221  2234444555554 566789999998843  467888666543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.10  E-value=1.8  Score=42.35  Aligned_cols=186  Identities=12%  Similarity=-0.034  Sum_probs=92.4

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCC-
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLM-  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~-  222 (387)
                      ++.+|+...       ..+.+.++|+.|++-...  ++....-+..+..  +..+||.+. +        ..+.+||+. 
T Consensus       166 ~~~~~V~~~-------~~~~V~viD~~t~~v~~~--i~~g~~p~~v~~SpDGr~lyv~~~-d--------g~V~viD~~~  227 (567)
T 1qks_A          166 ENLFSVTLR-------DAGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFVIGR-D--------GKVNMIDLWM  227 (567)
T ss_dssp             GGEEEEEET-------TTTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEET-T--------SEEEEEETTS
T ss_pred             CceEEEEeC-------CCCeEEEEECCCCeEEEE--EeCCCCccceEECCCCCEEEEEcC-C--------CeEEEEECCC
Confidence            455666543       235789999998865431  1222221222222  446787642 1        268999985 


Q ss_pred             -CCccccCeEEcCCCCCCcccccceeEEEE-----CC-EEEEEeeeCCeEEEEECCCCcee-eccc-ccc-CC-----C-
Q 044903          223 -NGEKNSRWEKTGELKDGRFSREAIDAVGW-----KG-KLCLVNVKGAEGAVYDVVANTWD-DMRE-GMV-RG-----W-  286 (387)
Q Consensus       223 -t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-----~g-~lyv~gg~~~~i~~yD~~~~~W~-~~~~-~~~-~~-----~-  286 (387)
                       +.+      .+..++....+   ...+.-     +| .+|+.+.....+.++|..+.+=. .++. ++. .+     . 
T Consensus       228 ~t~~------~v~~i~~G~~P---~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~  298 (567)
T 1qks_A          228 KEPT------TVAEIKIGSEA---RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP  298 (567)
T ss_dssp             SSCC------EEEEEECCSEE---EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred             CCCc------EeEEEecCCCC---ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence             443      22223222111   223333     55 68888777788999997664321 1221 111 00     0 


Q ss_pred             CCcEEE-EeCCe-EEEEeCCCCeEEEEeCCCCceEEccccccccCcee-EEEeCCe-EEEEecCCceEEEEEecCC
Q 044903          287 RGPVAA-MDEEV-LYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH-AAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       287 ~~~~~~-~~~g~-ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~~~-l~v~gg~~~~i~v~d~~~~  358 (387)
                      +...++ ..++. .++.-...+.|++.|........+...+..+..+. ....+|+ +|+....++.+.|+|..+.
T Consensus       299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            101111 22233 33333567889999987765544443332222222 2223444 4444444677777777743

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.05  E-value=2.1  Score=42.12  Aligned_cols=188  Identities=10%  Similarity=0.026  Sum_probs=95.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceee-CCC--C---CCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEE
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF-GPE--L---VTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~-l~~--~---~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~v  218 (387)
                      ++.+++.|+.+       ..+.+||..+.+-.. +..  +   .....-.+.+. -+++.++.|+.+.        .+.+
T Consensus       201 dg~~las~s~D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~--------~v~l  265 (611)
T 1nr0_A          201 DGSLFASTGGD-------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK--------TIKI  265 (611)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS--------EEEE
T ss_pred             CCCEEEEEECC-------CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC--------eEEE
Confidence            45555555532       356788887765433 211  0   11111111222 2566677776543        7889


Q ss_pred             EeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCe
Q 044903          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEV  297 (387)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~  297 (387)
                      ||..+.+    ....-......  ......+..++...+.++....+..+|+.+..-...-.+-..  .-.+++. .+++
T Consensus       266 Wd~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~  337 (611)
T 1nr0_A          266 WNVATLK----VEKTIPVGTRI--EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK--AITALSSSADGK  337 (611)
T ss_dssp             EETTTTE----EEEEEECCSSG--GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSS
T ss_pred             EeCCCCc----eeeeecCCCCc--cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC--CEEEEEEeCCCC
Confidence            9998876    54332222111  111334455676666666667888899876652221111000  0112222 2566


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903          298 LYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       298 ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ..+.++.++.|.+||..+..-..+........-.++....+..++.++.+..+.++|..
T Consensus       338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence            66677788999999998876544321111111122222233334444556667777655

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=94.94  E-value=0.96  Score=40.88  Aligned_cols=200  Identities=10%  Similarity=0.084  Sum_probs=99.6

Q ss_pred             eeEEEe-CCEEEEEcCccCCCCCCCCccEEEeCCCCceee---CCCCC-CCcee-eeEEee--CCEEEEEecCCCCCCCC
Q 044903          140 VQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTF---GPELV-TPRRW-CAAGYS--RGAVYVASGIGSQFSSD  211 (387)
Q Consensus       140 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~---l~~~~-~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~  211 (387)
                      +.++.. ++.||++.....  ......+++||+.+++-.+   ++... .+..+ ...++.  ++.+|+......     
T Consensus        70 ~gv~~d~~g~L~v~D~g~~--~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~-----  142 (343)
T 2qe8_A           70 LGIKSDGNGIVWMLDNGNQ--SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD-----  142 (343)
T ss_dssp             EEEEECSSSEEEEEECHHH--HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG-----
T ss_pred             eEEEEcCCCcEEEEcCCCC--cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC-----
Confidence            444443 578999763210  0112578999999887433   22111 11111 222333  578998853110     


Q ss_pred             CCceEEEEeCCCCccccCeEEcCC---C-CCC-cccc------------------cceeEEEE--CC-EEEEEeeeCCeE
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTGE---L-KDG-RFSR------------------EAIDAVGW--KG-KLCLVNVKGAEG  265 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~~---~-~~~-~~~~------------------~~~~~v~~--~g-~lyv~gg~~~~i  265 (387)
                      ....+.+||+.+++   .|+.+..   + +.+ .+..                  ....++.+  +| .||+....+..+
T Consensus       143 ~~~~i~v~d~~~g~---~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l  219 (343)
T 2qe8_A          143 DKAALIRVDLQTGL---AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM  219 (343)
T ss_dssp             GGCEEEEEETTTCC---EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred             CCCeEEEEECCCCC---EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence            23478899998765   2665532   1 110 0000                  00112222  34 466664444566


Q ss_pred             EEEECCC--C-------ceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE
Q 044903          266 AVYDVVA--N-------TWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA  335 (387)
Q Consensus       266 ~~yD~~~--~-------~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~  335 (387)
                      +.+|...  +       .+..+...-..+. ...+++ .+|.||+.....+.|.+||+++.+...+...+.......++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~-pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          220 YRIKSADLSNLQLTDAELGSKIERYSEKPI-CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             EEEEHHHHTCTTCCHHHHHTTCEEEEECCS-CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred             EEEEHHHhcCCCCChhhhhcceEecccCCC-CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence            7776421  0       0111110000111 112332 367899998777899999995566666554443333444443


Q ss_pred             -eCCeEEEEecCCceE
Q 044903          336 -GGGRVCAVCENGGGI  350 (387)
Q Consensus       336 -~~~~l~v~gg~~~~i  350 (387)
                       -+|++||.....+.+
T Consensus       299 ~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          299 GSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CTTSCEEEEECCGGGS
T ss_pred             CCCCcEEEEeCccccc
Confidence             468899986543333

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.92  E-value=0.16  Score=51.22  Aligned_cols=169  Identities=10%  Similarity=-0.034  Sum_probs=90.1

Q ss_pred             ccEEEeCCCCceeeCCCC-CCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC----CccccCeEEcC--CCC
Q 044903          165 RPLIFDPICRTWTFGPEL-VTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN----GEKNSRWEKTG--ELK  237 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t----~~~~~~W~~~~--~~~  237 (387)
                      .+.++++.+.....+.+. ..+. ..+....++.||++-..        ...|.++++.+    ..    -..+.  .+.
T Consensus       387 ~I~~id~~~~~~~~~~~~~~~p~-gla~d~~~~~Ly~sD~~--------~~~I~~~~~~g~~~~~~----~~~~i~~~~~  453 (699)
T 1n7d_A          387 EVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSS----YDTVISRDIQ  453 (699)
T ss_dssp             C-CEECTTSCCEECCSCCCTTCC-CCEEETTTTEEEECCTT--------TTSBEEEESCCCCC-CC----CCCBCCSCC-
T ss_pred             ceEEEeCCCCcceeeeccCcceE-EEccccccCeEEEEecC--------CCeEEEEecCCCCCCcc----eEEEEeCCCC
Confidence            456777777766654322 2221 11122236788886332        23677788765    11    11111  111


Q ss_pred             CCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeecc-ccccCCCCCcEEEE--eCCeEEEEeCCC-CeEEEE
Q 044903          238 DGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMR-EGMVRGWRGPVAAM--DEEVLYGIDENS-CTLSKY  311 (387)
Q Consensus       238 ~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~~--~~g~ly~~g~~~-~~v~~y  311 (387)
                      .+      ...++  .++.||+.......|.++|+....-+.+. ..+..   ...+++  .++.||+..... +.|+++
T Consensus       454 ~P------~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~---P~giavDp~~g~ly~td~~~~~~I~~~  524 (699)
T 1n7d_A          454 AP------DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK---PRAIVVDPVHGFMYWTDWGTPAKIKKG  524 (699)
T ss_dssp             -C------CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC---CCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred             Cc------ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC---cceEEEccCCCcEEEcccCCCCeEEEE
Confidence            11      11222  46889998655578999998765433332 11111   123343  367899887433 689999


Q ss_pred             eCCCCceEEccccccccCceeEEE--eCCeEEEEecCCceEEEEEec
Q 044903          312 DEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~--~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +++...-+.+... .+..+.+++.  .+++||+.-.....|.++|+.
T Consensus       525 ~~dG~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          525 GLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             CSSSCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             eCCCCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            8876544333221 1222333443  367888886666778888876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.91  E-value=2.2  Score=38.87  Aligned_cols=191  Identities=12%  Similarity=-0.047  Sum_probs=98.4

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      -+|+++++++...     ...+.++|+.+.+-.........  -...+. -++++++.++. .        .+.+++..+
T Consensus       143 pDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspdg~~l~s~s~-~--------~~~~~~~~~  206 (365)
T 4h5i_A          143 REGTVAAIASSKV-----PAIMRIIDPSDLTEKFEIETRGE--VKDLHFSTDGKVVAYITG-S--------SLEVISTVT  206 (365)
T ss_dssp             TTSSCEEEEESCS-----SCEEEEEETTTTEEEEEEECSSC--CCEEEECTTSSEEEEECS-S--------CEEEEETTT
T ss_pred             CCCCEEEEEECCC-----CCEEEEeECCCCcEEEEeCCCCc--eEEEEEccCCceEEeccc-e--------eEEEEEecc
Confidence            3566555443221     14578899988765543221111  111222 24565555542 1        456777776


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccccCCCCC--cEEE-EeCC
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGMVRGWRG--PVAA-MDEE  296 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~~~~~~~--~~~~-~~~g  296 (387)
                      +.    -............ -...+..-+|+.++.+...    ..+..+|...............+...  .+++ ..+|
T Consensus       207 ~~----~~~~~~~~~~~~~-v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          207 GS----CIARKTDFDKNWS-LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             CC----EEEEECCCCTTEE-EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             Cc----ceeeeecCCCCCC-EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence            65    3322211111000 0012233477777766544    24566666555544332111111111  1222 2367


Q ss_pred             eEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCce--eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          297 VLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.+.++.++.|.+||.++.+  .+... ..+....  .++..+|+.++.|+.++.|-|+|+..+
T Consensus       282 ~~lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          282 ELAVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             CEEEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CceEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            888888889999999998753  33222 2223332  233458899999888999999998643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=94.90  E-value=0.84  Score=47.50  Aligned_cols=133  Identities=12%  Similarity=0.014  Sum_probs=73.5

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccc-------cccCC
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMRE-------GMVRG  285 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~-------~~~~~  285 (387)
                      .+.+||..+.+    -...-..+.      ...++.+  ++...+.|.....+.+||..+..-.....       ....+
T Consensus        80 ~v~lWd~~~~~----~~~~~~~~~------~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~  149 (902)
T 2oaj_A           80 TVYVLSLYSQK----VLTTVFVPG------KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA  149 (902)
T ss_dssp             EEEEEETTTCS----EEEEEECSS------CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred             eEEEEECCCCc----EEEEEcCCC------CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc
Confidence            78889988776    322111111      1222222  45666666666789999998765321100       00111


Q ss_pred             C--CCcEEEEeC--CeEEEEeCCCCeEEEEeCCCCceEEccccc-----c-----------ccCcee--EEEeCCeEEEE
Q 044903          286 W--RGPVAAMDE--EVLYGIDENSCTLSKYDEVMDDWKEVVKSD-----L-----------LKGARH--AAAGGGRVCAV  343 (387)
Q Consensus       286 ~--~~~~~~~~~--g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~-----~-----------~~~~~~--~~~~~~~l~v~  343 (387)
                      .  .-.+++...  +.+.+.+..++.+ +||.++.+-.......     .           ......  ....+|+.++.
T Consensus       150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las  228 (902)
T 2oaj_A          150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT  228 (902)
T ss_dssp             CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred             CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence            1  122344432  3567777788899 9999887543321110     0           012222  22347888888


Q ss_pred             ecCCceEEEEEecCC
Q 044903          344 CENGGGIVVVDVKAA  358 (387)
Q Consensus       344 gg~~~~i~v~d~~~~  358 (387)
                      |+.++.+.+||+.++
T Consensus       229 gs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          229 IHEDNSLVFWDANSG  243 (902)
T ss_dssp             EETTCCEEEEETTTC
T ss_pred             EECCCeEEEEECCCC
Confidence            888899999998743

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.86  E-value=1.5  Score=44.42  Aligned_cols=141  Identities=9%  Similarity=-0.067  Sum_probs=77.5

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++.|++++|...        -+..||+.+++    +..+..-..  .......++..  +|.|++-+  ...+..||+.+
T Consensus       482 ~g~lWi~~~t~~--------Gl~~~d~~~~~----~~~~~~~~~--~~~~~~~~i~~d~~g~lWigt--~~Gl~~~~~~~  545 (758)
T 3ott_A          482 EGNVWVLLYNNK--------GIDKINPRTRE----VTKLFADEL--TGEKSPNYLLCDEDGLLWVGF--HGGVMRINPKD  545 (758)
T ss_dssp             TSCEEEEETTCS--------SEEEEETTTTE----EEEECTTTS--CGGGCEEEEEECTTSCEEEEE--TTEEEEECC--
T ss_pred             CCCEEEEccCCC--------CcEEEeCCCCc----eEEecCCCc--CCCcccceEEECCCCCEEEEe--cCceEEEecCC
Confidence            578998766533        36889999988    887642110  00011223333  47787643  24689999999


Q ss_pred             Cceeecc-ccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCceE
Q 044903          273 NTWDDMR-EGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGI  350 (387)
Q Consensus       273 ~~W~~~~-~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~~i  350 (387)
                      ++++... .+++.. ...+++..+|.|++-.  ...+.+||+++.+.+.... +...-..++.. -+|.||+-|  ..++
T Consensus       546 ~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~l~fG~--~~Gl  619 (758)
T 3ott_A          546 ESQQSISFGSFSNN-EILSMTCVKNSIWVST--TNGLWIIDRKTMDARQQNM-TNKRFTSLLFDPKEDCVYLGG--ADGF  619 (758)
T ss_dssp             CCCCBCCCCC---C-CEEEEEEETTEEEEEE--SSCEEEEETTTCCEEEC---CCCCCSEEEEETTTTEEEEEC--BSEE
T ss_pred             CceEEecccCCCcc-ceEEEEECCCCEEEEC--CCCeEEEcCCCceeEEecC-CCCceeeeEEECCCCcEEEec--CCce
Confidence            8887653 122221 1223344578888875  4569999999988766432 11111122222 366766653  4567


Q ss_pred             EEEEecC
Q 044903          351 VVVDVKA  357 (387)
Q Consensus       351 ~v~d~~~  357 (387)
                      ..+|+..
T Consensus       620 ~~f~p~~  626 (758)
T 3ott_A          620 GISHSNL  626 (758)
T ss_dssp             EEEEC--
T ss_pred             EEEChhh
Confidence            7778773

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=94.71  E-value=3.2  Score=39.92  Aligned_cols=179  Identities=8%  Similarity=0.049  Sum_probs=93.9

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++..++.++.+       ..+.++|..+..-..+.....+ ....+..-+++.++.|+.+.        .+.+||.....
T Consensus       314 ~~~~l~t~~~d-------~~i~~w~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~dg--------~v~~~~~~~~~  377 (577)
T 2ymu_A          314 DGQTIASASDD-------KTVKLWNRNGQHLQTLTGHSSS-VWGVAFSPDGQTIASASDDK--------TVKLWNRNGQL  377 (577)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTSCEEEEECCCSSC-EEEEEECTTSSEEEEEETTS--------EEEEEETTCCE
T ss_pred             CCCEEEEEeCC-------CeEEEEeCCCCeeEEEeCCCCC-EEEEEECCCCCEEEEEeCCC--------EEEEEcCCCCE
Confidence            45555555532       3466778766554443322111 11112222456666665433        56778865443


Q ss_pred             cccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEe
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g  302 (387)
                          -..+......      ..++.  -+|+..+.++....+.+||...+.-..+.. ...  .-.+++. .+++..+.+
T Consensus       378 ----~~~~~~~~~~------v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~--~v~~~~~s~d~~~l~~~  444 (577)
T 2ymu_A          378 ----LQTLTGHSSS------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG-HSS--SVWGVAFSPDDQTIASA  444 (577)
T ss_dssp             ----EEEEECCSSC------EEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC-CSS--CEEEEEECTTSSEEEEE
T ss_pred             ----EEEecCCCCC------eEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC-CCC--CeEEEEECCCCCEEEEE
Confidence                3333211111      22222  356766777766788899865433232221 111  1112222 356677777


Q ss_pred             CCCCeEEEEeCCCCceEEccccccccCc--eeEEEeCCeEEEEecCCceEEEEEec
Q 044903          303 ENSCTLSKYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       303 ~~~~~v~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +.++.+.+||...+.-..+.   .....  ..+...++++++.++.+..+.+||..
T Consensus       445 ~~d~~v~~w~~~~~~~~~~~---~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~  497 (577)
T 2ymu_A          445 SDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  497 (577)
T ss_dssp             ETTSEEEEEETTSCEEEEEE---CCSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             cCCCEEEEEECCCCEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence            77889999998665433322   22222  22334478888888888889999965

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.45  E-value=1.1  Score=40.30  Aligned_cols=139  Identities=9%  Similarity=-0.059  Sum_probs=75.8

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCc
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ++.+|+++..+        ..+..||+.+++    ..... .+...    ...+..-+|++++..  ...+..||+.+++
T Consensus        60 ~~~l~~~d~~~--------~~i~~~d~~~~~----~~~~~-~~~~v----~~i~~~~dg~l~v~~--~~gl~~~d~~~g~  120 (326)
T 2ghs_A           60 SGTAWWFNILE--------RELHELHLASGR----KTVHA-LPFMG----SALAKISDSKQLIAS--DDGLFLRDTATGV  120 (326)
T ss_dssp             TTEEEEEEGGG--------TEEEEEETTTTE----EEEEE-CSSCE----EEEEEEETTEEEEEE--TTEEEEEETTTCC
T ss_pred             CCEEEEEECCC--------CEEEEEECCCCc----EEEEE-CCCcc----eEEEEeCCCeEEEEE--CCCEEEEECCCCc
Confidence            36788876442        268899998876    54432 22111    122233578888764  3468999998888


Q ss_pred             eeecccccc-CCCCC-cEEE-EeCCeEEEEeCC------CCeEEEEeCCCCceEEccccccccCceeEE-EeCC-eEEEE
Q 044903          275 WDDMREGMV-RGWRG-PVAA-MDEEVLYGIDEN------SCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGG-RVCAV  343 (387)
Q Consensus       275 W~~~~~~~~-~~~~~-~~~~-~~~g~ly~~g~~------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~-~l~v~  343 (387)
                      .+.+..... ..... ..++ -.+|++|+....      .+.|++||  +.+.+.+..  .......++ .-+| .+|+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~  196 (326)
T 2ghs_A          121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFV  196 (326)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEE
T ss_pred             EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEE
Confidence            775532111 00001 1222 235678875421      35789998  455544321  111122233 2244 47777


Q ss_pred             ecCCceEEEEEec
Q 044903          344 CENGGGIVVVDVK  356 (387)
Q Consensus       344 gg~~~~i~v~d~~  356 (387)
                      ......|+++|..
T Consensus       197 ~~~~~~I~~~d~~  209 (326)
T 2ghs_A          197 DTKVNRLMRVPLD  209 (326)
T ss_dssp             ETTTCEEEEEEBC
T ss_pred             ECCCCEEEEEEcc
Confidence            5556788888875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=94.43  E-value=2.6  Score=37.70  Aligned_cols=100  Identities=7%  Similarity=-0.048  Sum_probs=49.6

Q ss_pred             EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCcee
Q 044903          254 KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH  332 (387)
Q Consensus       254 ~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~  332 (387)
                      .+++.++.+..+.+||.....=..+..  ... .-.+++. .+++..+.++.++.|.+||..+..-. .........-.+
T Consensus       185 ~~l~s~~~d~~i~iwd~~~~~~~~~~~--h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~~v~~  260 (343)
T 2xzm_R          185 PYFASVGWDGRLKVWNTNFQIRYTFKA--HES-NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-QREFDAGSTINQ  260 (343)
T ss_dssp             CEEEEEETTSEEEEEETTTEEEEEEEC--CSS-CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-SEEEECSSCEEE
T ss_pred             CEEEEEcCCCEEEEEcCCCceeEEEcC--ccc-cceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-ceeecCCCcEEE
Confidence            455566666788888843321111111  000 0112222 35677777778899999998432111 011111111112


Q ss_pred             E-EEeCCeEEEEecCCceEEEEEecCC
Q 044903          333 A-AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       333 ~-~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      + ...+++++.. +.+..+.+||..+.
T Consensus       261 v~~sp~~~~la~-~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          261 IAFNPKLQWVAV-GTDQGVKIFNLMTQ  286 (343)
T ss_dssp             EEECSSSCEEEE-EESSCEEEEESSSC
T ss_pred             EEECCCCCEEEE-ECCCCEEEEEeCCC
Confidence            2 2335555544 55667889988743

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.39  E-value=2.8  Score=37.85  Aligned_cols=62  Identities=8%  Similarity=-0.031  Sum_probs=41.9

Q ss_pred             CCeEEEEeCCCCe-EEEEeCCCCceEEcccccc--ccCce-e-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCT-LSKYDEVMDDWKEVVKSDL--LKGAR-H-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~-v~~yd~~~~~W~~v~~~~~--~~~~~-~-~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++++.+.++.++. |.+||..+.+-.  .....  ..... + ....+++.++.++.++.+.+||+...
T Consensus       206 ~g~~l~s~s~d~~~v~iwd~~~~~~~--~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          206 KSDMVATCSQDGTIIRVFKTEDGVLV--REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             TSSEEEEEETTCSEEEEEETTTCCEE--EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEE--EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            5677777778898 999999875432  22221  22222 2 23347888888888899999999743

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.26  E-value=0.73  Score=40.84  Aligned_cols=168  Identities=10%  Similarity=0.116  Sum_probs=83.5

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~  242 (387)
                      ..++.|| .+.+-.-....+... ..+.+. -++.||+..          .. +..||+ +++..  |.....  .... 
T Consensus        40 ~~l~~~d-~~g~~~~~~~~~~~~-~~~~~~~~~g~l~v~t----------~~-l~~~d~-~g~~~--~~~~~~--~~~~-  100 (330)
T 3hxj_A           40 KNLYAIN-TDGSVKWFFKSGEII-ECRPSIGKDGTIYFGS----------DK-VYAINP-DGTEK--WRFDTK--KAIV-  100 (330)
T ss_dssp             TTTEEEC-TTSCEEESSCGGGEE-EECCEETTTTEECCSS----------CE-EEEECC-CGGGG--GGSCC--------
T ss_pred             CEEEEEC-CCCcEEEEEecCCCc-ccceEEecCCcEEEec----------Cc-EEEECC-CCcEE--EEEECC--CCcc-
Confidence            3578899 665432222222111 122222 256777631          11 788887 44322  653321  1111 


Q ss_pred             ccceeEEEECCEEEEEeeeCCeEEEEECC-CCceeeccccccCCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCC-ceE
Q 044903          243 REAIDAVGWKGKLCLVNVKGAEGAVYDVV-ANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSKYDEVMD-DWK  319 (387)
Q Consensus       243 ~~~~~~v~~~g~lyv~gg~~~~i~~yD~~-~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~~~~~v~~yd~~~~-~W~  319 (387)
                         ...+..+|.+|+.. ....+..||+. ...|+.......    ..+.+.. ++.||+- ...+.++.||++.. .|.
T Consensus       101 ---~~~~~~~~~l~v~t-~~~~l~~~d~~g~~~~~~~~~~~~----~~~~~~~~~g~l~vg-t~~~~l~~~d~~g~~~~~  171 (330)
T 3hxj_A          101 ---SDFTIFEDILYVTS-MDGHLYAINTDGTEKWRFKTKKAI----YATPIVSEDGTIYVG-SNDNYLYAINPDGTEKWR  171 (330)
T ss_dssp             ---CCEEEETTEEEEEC-TTSEEEEECTTSCEEEEEECSSCC----CSCCEECTTSCEEEE-CTTSEEEEECTTSCEEEE
T ss_pred             ---cCceEECCEEEEEe-cCCEEEEEcCCCCEEEEEcCCCce----eeeeEEcCCCEEEEE-cCCCEEEEECCCCCEeEE
Confidence               22334489988753 23578999988 346765432111    1222333 6777764 34578999999833 355


Q ss_pred             EccccccccCceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEEc
Q 044903          320 EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       320 ~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~~  367 (387)
                      .-.....  ....+...+|.||+.+   ..++.+|...   ...|+..
T Consensus       172 ~~~~~~~--~~~~~~d~~g~l~v~t---~~l~~~d~~g---~~~~~~~  211 (330)
T 3hxj_A          172 FKTNDAI--TSAASIGKDGTIYFGS---DKVYAINPDG---TEKWNFY  211 (330)
T ss_dssp             EECSSCC--CSCCEECTTCCEEEES---SSEEEECTTS---CEEEEEC
T ss_pred             EecCCCc--eeeeEEcCCCEEEEEe---CEEEEECCCC---cEEEEEc
Confidence            4321111  1111222466777664   6777777332   2457653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=94.21  E-value=0.34  Score=43.26  Aligned_cols=106  Identities=13%  Similarity=-0.002  Sum_probs=60.9

Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE-eCC-eEEEEeCCCCeEEEEeCCCCceEEcccccc--
Q 044903          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEE-VLYGIDENSCTLSKYDEVMDDWKEVVKSDL--  326 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~g-~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~--  326 (387)
                      .++++|+.++....+.++|+.+++....-. .........+++ .++ .+|+.+..++.|++||+++.+-......+.  
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~   87 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP   87 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEe-cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc
Confidence            367888888777899999998876432211 111001123333 234 588887777899999998876543222211  


Q ss_pred             ---ccCcee-EEEeCCeEEEEecC------------CceEEEEEecC
Q 044903          327 ---LKGARH-AAAGGGRVCAVCEN------------GGGIVVVDVKA  357 (387)
Q Consensus       327 ---~~~~~~-~~~~~~~l~v~gg~------------~~~i~v~d~~~  357 (387)
                         ...... .+.-+|+.++++..            ...+.++|+.+
T Consensus        88 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           88 GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence               111222 23335544444332            37899999875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=94.21  E-value=2.5  Score=41.77  Aligned_cols=180  Identities=9%  Similarity=-0.064  Sum_probs=92.9

Q ss_pred             CccEEEeCCC------CceeeCC-CCCCCceeeeEEeeCCE-EEEEecCCCCCCCCCCceEEEEeCC-CC---ccccCeE
Q 044903          164 TRPLIFDPIC------RTWTFGP-ELVTPRRWCAAGYSRGA-VYVASGIGSQFSSDVAKSVEKWDLM-NG---EKNSRWE  231 (387)
Q Consensus       164 ~~~~vydp~t------~~W~~l~-~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~vyd~~-t~---~~~~~W~  231 (387)
                      ..++++|..+      .+-+.+. .-.. ........-+++ |+........ ..-....+.++|.. ++   +    ..
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~-~~~~~~~i~~~d~~~~g~~~~----~~  234 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPR-MPWEGTELKTARVTEDGRFAD----TR  234 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSS-EECCCEECTTSSEEEEEEECTTC-CTTTCEEEEEEEECTTSCEEE----EE
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCC-cccCceECCCCCEEEEEECCCCC-CCCCCcEEEEEEECCCCcccc----cE
Confidence            5789999988      6766665 3221 111111122444 4444322210 01123578999998 56   3    33


Q ss_pred             EcCCCCCCcccccceeEEE--ECCEEEEEeeeC--CeEEEEECCCCceeeccccccC----CCC--CcEEEE-eCCeEEE
Q 044903          232 KTGELKDGRFSREAIDAVG--WKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVR----GWR--GPVAAM-DEEVLYG  300 (387)
Q Consensus       232 ~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~----~~~--~~~~~~-~~g~ly~  300 (387)
                      .+..-...     ......  -||++|+.+...  ..++.+|+.+++++.+......    .|.  ...++. .++++++
T Consensus       235 ~l~~~~~~-----~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          235 TLLGGPEE-----AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EEEEETTB-----CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             EeCCCCCc-----eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence            33211000     111222  278887776544  4789999988888876532110    111  123333 3677777


Q ss_pred             EeCCCCe--EEEEeCCCCceEEccccccccCc-eeE-EEeCCeEEEEecCC---ceEEEEEecCC
Q 044903          301 IDENSCT--LSKYDEVMDDWKEVVKSDLLKGA-RHA-AAGGGRVCAVCENG---GGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~--v~~yd~~~~~W~~v~~~~~~~~~-~~~-~~~~~~l~v~gg~~---~~i~v~d~~~~  358 (387)
                      .... +.  |+.+|.++...+.+...   ... ..+ ...++.++++....   ..++.+|..++
T Consensus       310 ~~~~-~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          310 VHGK-GAAVLGILDPESGELVDAAGP---WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             EEBS-SSCEEEEEETTTTEEEECCSS---CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EEEc-CccEEEEEECCCCcEEEecCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            7655 54  66668887776665432   111 122 34456666664432   35777776543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.16  E-value=0.015  Score=57.36  Aligned_cols=32  Identities=13%  Similarity=0.286  Sum_probs=27.9

Q ss_pred             CCCChHHHHHHHhhhc-C---hhhHHHhhHhhhhhc
Q 044903           43 LPGLPDHIAHLCLSHV-H---PSILHNVCHSWRRLI   74 (387)
Q Consensus        43 ~~~LP~dl~~~iL~rL-P---~~~~r~Vck~W~~li   74 (387)
                      ...||||++.+||++| |   ..+++.|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            3579999999999999 6   667789999999874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.12  E-value=3.1  Score=42.13  Aligned_cols=177  Identities=10%  Similarity=0.041  Sum_probs=95.4

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      .++.||+...         .-+++||+.++++...... ......+....++.|++...          .-+..||+.++
T Consensus        72 ~~g~lWigT~---------~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt~----------~Gl~~~~~~~~  131 (758)
T 3ott_A           72 DNTYLYMGTD---------NGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGAL----------NGLYTYQLQSR  131 (758)
T ss_dssp             TTTEEEEEET---------TEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEET----------TEEEEEETTTC
T ss_pred             CCCcEEEEeC---------CCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEcC----------CcceeEeCCCC
Confidence            3566776432         3468999999888752111 11111122334778887521          14688999888


Q ss_pred             ccccCeEEcC----CCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCC---CcEEEEe-
Q 044903          225 EKNSRWEKTG----ELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR---GPVAAMD-  294 (387)
Q Consensus       225 ~~~~~W~~~~----~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~---~~~~~~~-  294 (387)
                      +    .....    .++..     .......  +|.|++..  ...+..||+.+++.+...........   -.++... 
T Consensus       132 ~----~~~~~~~~~~l~~~-----~i~~i~~d~~g~lWigt--~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  200 (758)
T 3ott_A          132 K----LTSFDTRRNGLPNN-----TIYSIIRTKDNQIYVGT--YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT  200 (758)
T ss_dssp             C----EEEECHHHHCCSCS-----CEEEEEECTTCCEEEEE--TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET
T ss_pred             e----EEEeccCCCCcCCC-----eEEEEEEcCCCCEEEEe--CCCHhhCccCCCceEEecCCCccccccceeEEEEEEC
Confidence            8    77652    12211     1222233  57787743  24688999998887654321111111   1123333 


Q ss_pred             -CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCceEEEEEecC
Q 044903          295 -EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       295 -~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                       ++.||+-.  .+.++.||+++++++....++... -.+++. -+|.|+|-.  ..++++||..+
T Consensus       201 ~~~~lWigt--~~Gl~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigT--~~Gl~~~~~~~  260 (758)
T 3ott_A          201 TRQCVWIGT--EGYLFQYFPSTGQIKQTEAFHNNS-IKSLALDGNGDLLAGT--DNGLYVYHNDT  260 (758)
T ss_dssp             TTTEEEEEE--EEEEEEEETTTTEEEEEEEEEEEE-EEEEEECTTCCEEEEE--TTEEEEECCTT
T ss_pred             CCCEEEEEE--CCCCeEEcCCCCeEEeccCCCCCe-EEEEEEcCCCCEEEEe--CCceeEEecCC
Confidence             23467643  357999999998887654332111 122222 256677654  23566666653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.08  E-value=2  Score=38.92  Aligned_cols=182  Identities=10%  Similarity=-0.094  Sum_probs=90.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~  242 (387)
                      ..++++|..+.+.+.+..-........... -+++|++... +.  .......++++|..+.+    +..+.. ..+...
T Consensus       168 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~-~~--~~~~~~~l~~~d~~~~~----~~~l~~-~~~~~~  239 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHE-GP--HDLVDARMWLVNEDGSN----VRKIKE-HAEGES  239 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC-SC--SSSCSCCCEEEETTSCC----CEESSC-CCTTEE
T ss_pred             ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEec-CC--CCCCCceEEEEECCCCc----eeEeec-cCCCcc
Confidence            467899999888776643211111111112 1233544432 11  11122478899998887    777754 111100


Q ss_pred             ccceeEEEECCE-EEEEeeeC--Ce--EEEEECCCCceeeccccccCCCCCcEEEEe-CCeEEEEeC-------------
Q 044903          243 REAIDAVGWKGK-LCLVNVKG--AE--GAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDE-------------  303 (387)
Q Consensus       243 ~~~~~~v~~~g~-lyv~gg~~--~~--i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly~~g~-------------  303 (387)
                       ....+..-+|+ |++.+...  ..  +.++|+.+++.+.+... + +..  ..... +|+++++..             
T Consensus       240 -~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~--~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          240 -CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS--HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             -EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE--EEEECSSSSEEEEEECCC----------
T ss_pred             -ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC--CCccCCCCceEEEecCCcceeecccccc
Confidence             00111222555 55443322  33  89999988776655421 1 111  22233 666666532             


Q ss_pred             ---CCCeEEEEeCCCCceEEccccccc----------cCceeEEEeCC-eEEEEecC--CceEEEEEecCC
Q 044903          304 ---NSCTLSKYDEVMDDWKEVVKSDLL----------KGARHAAAGGG-RVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       304 ---~~~~v~~yd~~~~~W~~v~~~~~~----------~~~~~~~~~~~-~l~v~gg~--~~~i~v~d~~~~  358 (387)
                         ....|++||+++...+.+...+..          .........+| .|++.+..  ...++++|....
T Consensus       315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             ccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence               235799999988876655432210          01112233455 45554432  246777787754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=93.97  E-value=2.6  Score=36.73  Aligned_cols=134  Identities=16%  Similarity=0.080  Sum_probs=75.7

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      .+.+||..+++    -..+-.+....   ....++.  -+|++.+.|+.+..+.++|.++++-...-.... .  .....
T Consensus        46 tV~iWd~~tg~----~~~~~~~~~~~---~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~-~--~~~~~  115 (318)
T 4ggc_A           46 SVYLWSASSGD----ILQLLQMEQPG---EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-A--RVGSL  115 (318)
T ss_dssp             EEEEEETTTCC----EEEEEECCSTT---CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-S--CEEEE
T ss_pred             EEEEEECCCCC----EEEEEEecCCC---CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCcc-c--eEEEe
Confidence            67888888877    54433222111   1122233  267777777777899999998875432211111 1  11222


Q ss_pred             EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ...+.+.+.+...+.+..++..+.............. .......+++.++.++.++.+.+||..+.
T Consensus       116 ~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          116 SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            3345666667677888888877654333221111111 22233456777788778888999998753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=93.85  E-value=2.8  Score=35.79  Aligned_cols=173  Identities=10%  Similarity=-0.063  Sum_probs=82.9

Q ss_pred             CCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC-CccccCeEEcCCCCCCcc
Q 044903          163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN-GEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       163 ~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t-~~~~~~W~~~~~~~~~~~  241 (387)
                      ...++++|+.+++...+........ .....-+++.+++++.         ..+.+||..+ .+    ...+........
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~---------~~i~~~d~~~~~~----~~~~~~~~~~~~   86 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSE---------GLLYRLSLAGDPS----PEKVDTGFATIC   86 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEET---------TEEEEEESSSCCS----CEECCCTTCCCB
T ss_pred             ceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcC---------CeEEEEeCCCCCC----ceEecccccccc
Confidence            4578999999888776543221111 1111224555555431         2689999998 77    665543221110


Q ss_pred             cccceeEEEECCEEEEEeee----CCeEEEEECCCCceeeccccccCCCCCcEEEEe-CC-eEEEEeCCCCe--EEEEeC
Q 044903          242 SREAIDAVGWKGKLCLVNVK----GAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDENSCT--LSKYDE  313 (387)
Q Consensus       242 ~~~~~~~v~~~g~lyv~gg~----~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g-~ly~~g~~~~~--v~~yd~  313 (387)
                        -......-+|+..+++..    ...++.+|..+..-..+.....    ...++.. ++ .|++.+..++.  ++.+|.
T Consensus        87 --~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           87 --NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP----SYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             --CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS----EEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             --ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC----ccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence              001222235655444442    2577888887766554432111    1122222 34 45545545564  555556


Q ss_pred             CCCceEEccccccccCceeEEEeCCe-EEEEecCC--ceEEEEEec
Q 044903          314 VMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCENG--GGIVVVDVK  356 (387)
Q Consensus       314 ~~~~W~~v~~~~~~~~~~~~~~~~~~-l~v~gg~~--~~i~v~d~~  356 (387)
                      ++.....+...+... .......+|+ |++.+..+  ..++.++..
T Consensus       161 ~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~  205 (297)
T 2ojh_A          161 DSGVETRLTHGEGRN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVD  205 (297)
T ss_dssp             TTCCEEECCCSSSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCcceEcccCCCcc-ccceECCCCCEEEEEecCCCCccEEEECCC
Confidence            666655543322111 1112233555 44443333  345555544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.83  E-value=0.97  Score=42.58  Aligned_cols=143  Identities=12%  Similarity=0.039  Sum_probs=81.7

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEeeeC----CeEEEEE
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG----AEGAVYD  269 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg~~----~~i~~yD  269 (387)
                      ++.|||+--.         ..+.++|+.+++    ...+......    -.+.++.-+|. ||+.....    ..+..++
T Consensus       149 ~g~Lyv~d~~---------~~I~~id~~~~~----v~~~~~~~~~----P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          149 HNHLYLVGEQ---------HPTRLIDFEKEY----VSTVYSGLSK----VRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             EEEEEEEEBT---------EEEEEEETTTTE----EEEEECCCSC----EEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCeEEEEeCC---------CcEEEEECCCCE----EEEEecCCCC----cceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            4788887321         578899999887    7666431110    01222223454 99886532    2455566


Q ss_pred             CCCCceeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCe-EEEEec
Q 044903          270 VVANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGR-VCAVCE  345 (387)
Q Consensus       270 ~~~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~-l~v~gg  345 (387)
                      .. ..|..... +........+++.  +|.||+.....+.|++||+++..-..+...+....+..++. -+|+ ||+.-.
T Consensus       212 ~~-g~~~~~~~-l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          212 RE-SGFKVITE-LTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             GG-GTSCSEEE-EEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             CC-Cceeeeee-eccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            43 33431111 1111112233443  68899998777899999998776544433332222333443 3555 999977


Q ss_pred             CCceEEEEEec
Q 044903          346 NGGGIVVVDVK  356 (387)
Q Consensus       346 ~~~~i~v~d~~  356 (387)
                      ..+.|+++|..
T Consensus       290 ~~~~I~~~~~d  300 (430)
T 3tc9_A          290 NQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCEEEEEeCC
Confidence            78899998876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=93.74  E-value=1.3  Score=39.14  Aligned_cols=102  Identities=6%  Similarity=-0.067  Sum_probs=58.4

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccc---cCCCCCcEEEEeCCeEEEEe----C-------------CCCeEEEE
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGM---VRGWRGPVAAMDEEVLYGID----E-------------NSCTLSKY  311 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~---~~~~~~~~~~~~~g~ly~~g----~-------------~~~~v~~y  311 (387)
                      +|++|+.......+..||++ ++.+.+....   ........++-.+|++|+.+    .             ..+.|++|
T Consensus        96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            68888765444678999986 6665553211   11111123333467899863    1             12469999


Q ss_pred             eCCCCceEEccccccccCceeEE-EeCCe-EEEEecC-----CceEEEEEecC
Q 044903          312 DEVMDDWKEVVKSDLLKGARHAA-AGGGR-VCAVCEN-----GGGIVVVDVKA  357 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~-~~~~~-l~v~gg~-----~~~i~v~d~~~  357 (387)
                      |+++.+.+.+.   .......++ .-+++ ||+....     ...|++||+..
T Consensus       175 d~~~g~~~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          175 PPDGSPLQRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             CSSSCCCEEEE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             cCCCCcEEEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence            99888887764   112222233 33554 7776443     26788888763

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=93.63  E-value=0.84  Score=40.75  Aligned_cols=135  Identities=16%  Similarity=0.091  Sum_probs=72.8

Q ss_pred             CccEEEeCCCCceeeCC-CCCCCceeeeEEee-C-CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          164 TRPLIFDPICRTWTFGP-ELVTPRRWCAAGYS-R-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~-~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      ..+++||+.+.+.+.+. .+..+.   ..+.. + +.+||+-..        ...+.+||....... ..+....++.  
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p~---gia~~~dg~~lyv~d~~--------~~~I~~~~~~~~~~~-~~~~~~~~~g--  230 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVPG---GAEVSADSSFVLVAEFL--------SHQIVKYWLEGPKKG-TAEVLVKIPN--  230 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCCC---EEEECTTSSEEEEEEGG--------GTEEEEEESSSTTTT-CEEEEEECSS--
T ss_pred             ceEEEEeCCCCEEEEeccCCccCc---ceEECCCCCEEEEEeCC--------CCeEEEEECCCCcCC-ccceEEeCCC--
Confidence            56899999888765432 111221   12222 3 358887432        236888888753200 0443332221  


Q ss_pred             ccccceeEEEECCEEEEEeee----------CCeEEEEECCCCceeeccc--cccCCCCCcEEEEeCCeEEEEeCCCCeE
Q 044903          241 FSREAIDAVGWKGKLCLVNVK----------GAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENSCTL  308 (387)
Q Consensus       241 ~~~~~~~~v~~~g~lyv~gg~----------~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~g~ly~~g~~~~~v  308 (387)
                        .+ ..++--+|.||+....          ...+.+||++...-..+..  +.... ....++..+++||+.+...+.|
T Consensus       231 --P~-gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~-~~~~~~~~~g~L~v~~~~~~~i  306 (322)
T 2fp8_A          231 --PG-NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGE-HFEQIQEHDGLLYIGTLFHGSV  306 (322)
T ss_dssp             --EE-EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTS-CCCEEEEETTEEEEECSSCSEE
T ss_pred             --CC-CeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccc-cceEEEEeCCEEEEeecCCCce
Confidence              11 1122235789988654          2568899987554444432  11111 1234455688999998777889


Q ss_pred             EEEeCCCC
Q 044903          309 SKYDEVMD  316 (387)
Q Consensus       309 ~~yd~~~~  316 (387)
                      .+|+++.+
T Consensus       307 ~~~~~~~~  314 (322)
T 2fp8_A          307 GILVYDKK  314 (322)
T ss_dssp             EEEEC---
T ss_pred             EEEecccc
Confidence            99998644

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.63  E-value=1.2  Score=41.52  Aligned_cols=103  Identities=14%  Similarity=0.077  Sum_probs=57.9

Q ss_pred             EEEEeeeCCeEEEEECCCC---ceeeccccccCCCC--CcEEEEe--CCeEEEEeCCCCeEEEEeCCCCc-eEEcccccc
Q 044903          255 LCLVNVKGAEGAVYDVVAN---TWDDMREGMVRGWR--GPVAAMD--EEVLYGIDENSCTLSKYDEVMDD-WKEVVKSDL  326 (387)
Q Consensus       255 lyv~gg~~~~i~~yD~~~~---~W~~~~~~~~~~~~--~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~-W~~v~~~~~  326 (387)
                      +++.|+....+.+||+.+.   .+.........+..  -..++..  ++.+++.++.++.|.+||..+.. .+.+.....
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            5666666678999999862   22211100011111  1123332  56788888788999999998652 222222212


Q ss_pred             ccCceeEEEe--CC-eEEEEecCCceEEEEEecC
Q 044903          327 LKGARHAAAG--GG-RVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       327 ~~~~~~~~~~--~~-~l~v~gg~~~~i~v~d~~~  357 (387)
                      ......++.+  ++ .+++.|+.++.|.+||...
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            2222222222  34 4888888889999999885

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=93.50  E-value=1.7  Score=40.23  Aligned_cols=104  Identities=9%  Similarity=0.008  Sum_probs=57.7

Q ss_pred             CCEEEEEeeeCCeEEEEECCCC--ceeecccc--ccCCCC--CcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCce-----
Q 044903          252 KGKLCLVNVKGAEGAVYDVVAN--TWDDMREG--MVRGWR--GPVAAMD-EE-VLYGIDENSCTLSKYDEVMDDW-----  318 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~--~~~~~~--~~~~~~~-~g-~ly~~g~~~~~v~~yd~~~~~W-----  318 (387)
                      ++++++.| .+..+.+||..+.  .+..+...  ...+..  -.+++.. ++ .+++.++.++.|.+||..+..-     
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence            56666665 5678999999832  33322100  001111  1122322 33 6788888889999999987653     


Q ss_pred             EEcccccc--c-------cCcee--EEEeCCeEEEEecCCceEEEEEecC
Q 044903          319 KEVVKSDL--L-------KGARH--AAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       319 ~~v~~~~~--~-------~~~~~--~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ..+.....  .       .....  ....+|++++.++. +.+.+||+..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            22221110  0       01222  22336777777777 8999999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.44  E-value=3.3  Score=37.42  Aligned_cols=144  Identities=9%  Similarity=-0.077  Sum_probs=74.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCc-eeeeEEe-eCCE-EEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPR-RWCAAGY-SRGA-VYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r-~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      ..++++|..+.+++.+.. ..+. .....+. -+++ |++......    .....+.++|..+++    ...+...+.  
T Consensus       216 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~~l~~~d~~~g~----~~~l~~~~~--  284 (396)
T 3c5m_A          216 ARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKG----QTDRVIYKANPETLE----NEEVMVMPP--  284 (396)
T ss_dssp             CCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETT----TCCEEEEEECTTTCC----EEEEEECCS--
T ss_pred             ceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCC----CccceEEEEECCCCC----eEEeeeCCC--
Confidence            578999999888888765 2111 1111222 2444 444432211    112358999999887    666554331  


Q ss_pred             ccccceeEEEE-CCEEEEEeee----------------CCeEEEEECCCCceeeccccccC----------CCCCcEEEE
Q 044903          241 FSREAIDAVGW-KGKLCLVNVK----------------GAEGAVYDVVANTWDDMREGMVR----------GWRGPVAAM  293 (387)
Q Consensus       241 ~~~~~~~~v~~-~g~lyv~gg~----------------~~~i~~yD~~~~~W~~~~~~~~~----------~~~~~~~~~  293 (387)
                      .    .....- +|++++.++.                ...++.+|+.+++.+.+......          ....+....
T Consensus       285 ~----~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~  360 (396)
T 3c5m_A          285 C----SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP  360 (396)
T ss_dssp             E----EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred             C----CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc
Confidence            1    122233 7776665431                15788999988776655421110          011122222


Q ss_pred             eCCeEEEEeCCCC--eEEEEeCCCCceEEcc
Q 044903          294 DEEVLYGIDENSC--TLSKYDEVMDDWKEVV  322 (387)
Q Consensus       294 ~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~  322 (387)
                      .+..|++.....+  .++.+|..+..++++.
T Consensus       361 dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~~  391 (396)
T 3c5m_A          361 NDDGVLFTSDFEGVPAIYIADVPESYKHLEH  391 (396)
T ss_dssp             TSSEEEEEECTTSSCEEEEEECCTTCC----
T ss_pred             CCCeEEEEecCCCCceEEEEEEccccccccc
Confidence            3345666554333  5888888887776643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=93.36  E-value=4.4  Score=36.54  Aligned_cols=114  Identities=12%  Similarity=0.104  Sum_probs=67.0

Q ss_pred             CCEEEEEeeeCCe-EEEEECCCCcee-eccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCC---ceEEccc--
Q 044903          252 KGKLCLVNVKGAE-GAVYDVVANTWD-DMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMD---DWKEVVK--  323 (387)
Q Consensus       252 ~g~lyv~gg~~~~-i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~---~W~~v~~--  323 (387)
                      +|++.+.++.+.. +.++|..+.+-. .+..+.... .-.+++. .+++.++.++.++.+.+||.++.   .+..+..  
T Consensus       206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            6777777777776 999999876432 121110111 1112222 35677777778899999998654   3333322  


Q ss_pred             cc---------------ccc---CceeEEEeCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          324 SD---------------LLK---GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       324 ~~---------------~~~---~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      .+               ...   ....+...+|+.++++..++.+.+|++...+.+..|.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~~~~~  345 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLI  345 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTTEEEE
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCceEEE
Confidence            00               000   02223345778888877788888888886655666765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=93.32  E-value=2.9  Score=37.79  Aligned_cols=187  Identities=10%  Similarity=-0.087  Sum_probs=88.4

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..++++|..+.+-+.+..-............+++.+++.....  .......++++|..+..    ...+........  
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~--~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~--  239 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGP--HDLVDARMWLINEDGTN----MRKVKTHAEGES--  239 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC--TTTSSCSEEEEETTSCC----CEESCCCCTTEE--
T ss_pred             ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecC--CCCCcceEEEEeCCCCc----eEEeeeCCCCcc--
Confidence            5678999998876665432211111122220343332222211  11224578899988777    666653221100  


Q ss_pred             cceeEEEECCE-EEEEeeeC--C--eEEEEECCCCceeecccccc-----CCCCCcEEEEeCCeEEEEe--------CCC
Q 044903          244 EAIDAVGWKGK-LCLVNVKG--A--EGAVYDVVANTWDDMREGMV-----RGWRGPVAAMDEEVLYGID--------ENS  305 (387)
Q Consensus       244 ~~~~~v~~~g~-lyv~gg~~--~--~i~~yD~~~~~W~~~~~~~~-----~~~~~~~~~~~~g~ly~~g--------~~~  305 (387)
                      ....+..-+|+ |++.....  .  .++++|+++++-+.+.....     ....+....-.|..|++..        ...
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  319 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND  319 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence            00111222565 54443332  2  38999998887655432111     0011223333344444432        234


Q ss_pred             CeEEEEeCCCCceEEcccccc-c---------cCceeEEEeCCe-EEEEecC--CceEEEEEecCC
Q 044903          306 CTLSKYDEVMDDWKEVVKSDL-L---------KGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       306 ~~v~~yd~~~~~W~~v~~~~~-~---------~~~~~~~~~~~~-l~v~gg~--~~~i~v~d~~~~  358 (387)
                      ..|++||+++.+-+.+..... .         ........-+|+ |++.+..  ..+++++|....
T Consensus       320 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~  385 (388)
T 3pe7_A          320 PFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPES  385 (388)
T ss_dssp             CEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGG
T ss_pred             CEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChh
Confidence            579999999887666553322 0         112223445665 4444332  356777777643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=92.99  E-value=5  Score=36.17  Aligned_cols=198  Identities=12%  Similarity=0.044  Sum_probs=101.0

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC------CCcee-eeEEe----eCCEEEEEecCCCCC-----C
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV------TPRRW-CAAGY----SRGAVYVASGIGSQF-----S  209 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~------~~r~~-~~~~~----~~~~iyv~GG~~~~~-----~  209 (387)
                      ++.+|+..-+       ...+.++||..+.-.++ ..+      .+... .+...    -.++|+|+.-.+..+     .
T Consensus        24 ~g~~~vs~l~-------~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           24 RQVFYQSNLY-------KGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             TTEEEEEETT-------TTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             CCEEEEEecc-------CCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4666665322       25678889986654443 222      11222 23333    246888863211111     1


Q ss_pred             CCCCceEEEEeCC---CCccccCeEEc-CCCCCC-------cccccceeEEEE--CCEEEEEeeeC-CeEEEEECCCC--
Q 044903          210 SDVAKSVEKWDLM---NGEKNSRWEKT-GELKDG-------RFSREAIDAVGW--KGKLCLVNVKG-AEGAVYDVVAN--  273 (387)
Q Consensus       210 ~~~~~~v~vyd~~---t~~~~~~W~~~-~~~~~~-------~~~~~~~~~v~~--~g~lyv~gg~~-~~i~~yD~~~~--  273 (387)
                      ......+.+||+.   +++..  |..- ......       .+.  .+.-+++  +|.+||.+..+ ..|+.+|+...  
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~--~~~dL~~~~~~~~~~~g~~~~--~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~  171 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPV--WSVNFEKVQDEFEKKAGKRPF--GVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV  171 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCS--EEEESHHHHHHHHHHHSSCCE--EEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred             cCCCCEEEEEcCCcCCCCCEE--EEecCcccccccccccccccc--CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence            1124678999988   66533  6532 111100       110  1222333  58899998888 89999999754  


Q ss_pred             -ceeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcccc--c---cccCcee--EEEeCCeEEEE
Q 044903          274 -TWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS--D---LLKGARH--AAAGGGRVCAV  343 (387)
Q Consensus       274 -~W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~--~---~~~~~~~--~~~~~~~l~v~  343 (387)
                       .|-.-.+.......-..++..  +..|++.+. .+.++++|..+....+++..  .   .....-.  ....+|+++++
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV  250 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV  250 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence             354322111111112244444  445666655 88999999885433122211  1   1122222  33479999777


Q ss_pred             ecCCceEEEEEec
Q 044903          344 CENGGGIVVVDVK  356 (387)
Q Consensus       344 gg~~~~i~v~d~~  356 (387)
                      +.....+.++.-.
T Consensus       251 ~~~~~~~~~l~S~  263 (334)
T 2p9w_A          251 GARAPYAISFRSW  263 (334)
T ss_dssp             EEETTEEEEEECS
T ss_pred             EcCCCCEEEEECC
Confidence            6554555555444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=92.93  E-value=1.3  Score=43.05  Aligned_cols=169  Identities=12%  Similarity=-0.048  Sum_probs=86.3

Q ss_pred             CccEEEeC--CCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDP--ICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp--~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..++..+.  .... ..+......+ ..+...-++.++++.+...        .+.+||..+++    -+.+...+.   
T Consensus        90 ~~l~~~~~~~~g~~-~~l~~~~~~~-~~~~s~dg~~~~~~s~~~~--------~~~l~d~~~g~----~~~l~~~~~---  152 (582)
T 3o4h_A           90 HALFKVNTSRPGEE-QRLEAVKPMR-ILSGVDTGEAVVFTGATED--------RVALYALDGGG----LRELARLPG---  152 (582)
T ss_dssp             EEEEEEETTSTTCC-EECTTSCSBE-EEEEEECSSCEEEEEECSS--------CEEEEEEETTE----EEEEEEESS---
T ss_pred             eEEEEEeccCCCcc-ccccCCCCce-eeeeCCCCCeEEEEecCCC--------CceEEEccCCc----EEEeecCCC---
Confidence            35666776  4333 2443333222 2233333445555544322        23488988887    666543221   


Q ss_pred             cccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCC--eEEEEeCC
Q 044903          242 SREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSC--TLSKYDEV  314 (387)
Q Consensus       242 ~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~--~v~~yd~~  314 (387)
                         ...+..-||+..+.+...    ..++.+|+++++++.+....  +.. ...+ .-+|+..+....++  .|++||.+
T Consensus       153 ---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~--~~~-~~~~~SpDG~~l~~~~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          153 ---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE--GSF-SSASISPGMKVTAGLETAREARLVTVDPR  226 (582)
T ss_dssp             ---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSS--CEE-EEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred             ---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCC--Ccc-ccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence               133344466655443332    56889999988887664311  110 1122 23454333544555  79999999


Q ss_pred             CCceEEccccccccCce-------eEEEeCCeEEEEecCCceEEEEEe
Q 044903          315 MDDWKEVVKSDLLKGAR-------HAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       315 ~~~W~~v~~~~~~~~~~-------~~~~~~~~l~v~gg~~~~i~v~d~  355 (387)
                      +.+.+.+......-...       ....-+|++++.+..++.+.+|++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          227 DGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             TCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            88777322111000001       113446677776655666666665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=92.82  E-value=7.6  Score=37.87  Aligned_cols=94  Identities=7%  Similarity=-0.051  Sum_probs=50.2

Q ss_pred             CeEEEEECCCCceeeccccccCCCCCcEEE-EeCC-eEEEEeCCCCeEEEEeCCCCceEEcc----ccccccCceeEEEe
Q 044903          263 AEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEE-VLYGIDENSCTLSKYDEVMDDWKEVV----KSDLLKGARHAAAG  336 (387)
Q Consensus       263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g-~ly~~g~~~~~v~~yd~~~~~W~~v~----~~~~~~~~~~~~~~  336 (387)
                      ..+.+.|........+.. +..+..-+... -.++ .+|+....+++|.++|.++.+-....    ..|.+......+.-
T Consensus       320 g~v~~vd~~~~~~~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p  398 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP  398 (567)
T ss_dssp             TEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred             CeEEEEecCCCccceeee-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence            677888877654433222 11121111222 2234 45555555688999999988543322    22332222222333


Q ss_pred             -CCeEEEEec-CCceEEEEEecC
Q 044903          337 -GGRVCAVCE-NGGGIVVVDVKA  357 (387)
Q Consensus       337 -~~~l~v~gg-~~~~i~v~d~~~  357 (387)
                       ++.+|+.+. ++..|.|+|...
T Consensus       399 ~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          399 TFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCcEEEeCCCCCCeEEEecCCC
Confidence             477888764 347899999885

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=92.62  E-value=0.033  Score=51.55  Aligned_cols=148  Identities=9%  Similarity=-0.034  Sum_probs=64.1

Q ss_pred             EEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEEC
Q 044903          191 AGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       191 ~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~  270 (387)
                      .++.++.||+.+..         ..+.++|..+++..  |+.-.   .+..    ...+..+|++|+.+.....+.++|.
T Consensus         5 P~v~~~~v~~gs~d---------g~v~a~d~~tG~~~--W~~~~---~~~~----s~p~~~~g~~~v~~s~dg~l~a~d~   66 (369)
T 2hz6_A            5 VTLPETLLFVSTLD---------GSLHAVSKRTGSIK--WTLKE---DPVL----QVPTHVEEPAFLPDPNDGSLYTLGS   66 (369)
T ss_dssp             ---CTTEEEEEETT---------SEEEEEETTTCCEE--EEEEC---CCSC----CCC-----CCEEECTTTCCEEEC--
T ss_pred             CeeeCCEEEEEcCC---------CEEEEEECCCCCEE--EEecC---CCce----ecceEcCCCEEEEeCCCCEEEEEEC
Confidence            34556777775431         26889999988865  87654   1111    2334557778887655568999998


Q ss_pred             CCC--ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceEEccccccccCceeEEEeCCeEEEEecC
Q 044903          271 VAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD--DWKEVVKSDLLKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       271 ~~~--~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~  346 (387)
                      +++  .|+.-..........+.. ..++.||+ +..++.++.||+++.  .|+.-....     ......++.| +++..
T Consensus        67 ~tG~~~w~~~~~~~~~~~~sp~~-~~~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~v-~~~~~  138 (369)
T 2hz6_A           67 KNNEGLTKLPFTIPELVQASPCR-SSDGILYM-GKKQDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSLL-YLGRT  138 (369)
T ss_dssp             ---CCSEECSCCHHHHHTTCSCC------CCC-CEEEEEEEEECCC---------------------------E-EEEEE
T ss_pred             CCCceeeeeeccCccccccCceE-ecCCEEEE-EeCCCEEEEEECCCCcEEEEecCCCc-----ccccccCCEE-EEEec
Confidence            654  565321100000111111 13555554 334567899988754  465422110     0111134444 44455


Q ss_pred             CceEEEEEecCCCCCceeEE
Q 044903          347 GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       347 ~~~i~v~d~~~~~~~~~W~~  366 (387)
                      ++.+..+|..++  ...|+.
T Consensus       139 dg~v~a~d~~tG--~~~W~~  156 (369)
T 2hz6_A          139 EYTITMYDTKTR--ELRWNA  156 (369)
T ss_dssp             EEEEECCCSSSS--SCCCEE
T ss_pred             CCEEEEEECCCC--CEEEeE
Confidence            677888888743  235775

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=92.60  E-value=8.8  Score=38.04  Aligned_cols=139  Identities=13%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCE-EEEEeeeC----CeEEEEECCCC-ceeeccccccC
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGK-LCLVNVKG----AEGAVYDVVAN-TWDDMREGMVR  284 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~-lyv~gg~~----~~i~~yD~~~~-~W~~~~~~~~~  284 (387)
                      ...+.++|..+++    -..+.......   .....+.+  +|+ |++.....    ..+..+|+.+. ..+.+......
T Consensus       234 ~~~l~~~d~~~~~----~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~  306 (706)
T 2z3z_A          234 HVTVGIYHLATGK----TVYLQTGEPKE---KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK  306 (706)
T ss_dssp             EEEEEEEETTTTE----EEECCCCSCTT---CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred             eeEEEEEECCCCc----eEeeccCCCCc---eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence            3578899998887    55544211110   11122222  565 54433221    47889999887 66655321111


Q ss_pred             CCC---CcEEEEe--CCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCceeEEEeCC-eEEEEecCC----ceEEE
Q 044903          285 GWR---GPVAAMD--EEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGG-RVCAVCENG----GGIVV  352 (387)
Q Consensus       285 ~~~---~~~~~~~--~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~-~l~v~gg~~----~~i~v  352 (387)
                      .+.   .......  +|++++.+..++  .|+.+|.+......+..............-+| .|++.+..+    ..++.
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence            111   1112233  667655554444  47777766666665532111111111222244 566665443    36777


Q ss_pred             EEecCC
Q 044903          353 VDVKAA  358 (387)
Q Consensus       353 ~d~~~~  358 (387)
                      +|..++
T Consensus       387 ~d~~~~  392 (706)
T 2z3z_A          387 IDIKGG  392 (706)
T ss_dssp             EETTCC
T ss_pred             EEcCCC
Confidence            777643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=91.97  E-value=10  Score=37.27  Aligned_cols=145  Identities=12%  Similarity=-0.012  Sum_probs=79.3

Q ss_pred             CccEEEeCC-CC---ceeeCCCCCCCceeeeEE-eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCC
Q 044903          164 TRPLIFDPI-CR---TWTFGPELVTPRRWCAAG-YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD  238 (387)
Q Consensus       164 ~~~~vydp~-t~---~W~~l~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~  238 (387)
                      ..++++|.. +.   +.+.+..-... .....+ .-++++|+.+..+.      ...++.+|..+++    ++.+.....
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~~spdg~l~~~~~~~~------~~~l~~~~~~~~~----~~~l~~~~~  285 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEE-AIAQAEWAPDGSLIVATDRTG------WWNLHRVDPATGA----ATQLCRREE  285 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTB-CEEEEEECTTSCEEEEECTTS------SCEEEEECTTTCC----EEESSCCSS
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCc-eEcceEECCCCeEEEEECCCC------CeEEEEEECCCCc----eeecccccc
Confidence            468999998 56   44444321111 111222 22567776665432      2368889988888    888765432


Q ss_pred             Cc----ccccceeEEEE-CCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEE-EEeCCeEEEEeCCC---CeE
Q 044903          239 GR----FSREAIDAVGW-KGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVA-AMDEEVLYGIDENS---CTL  308 (387)
Q Consensus       239 ~~----~~~~~~~~v~~-~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~-~~~~g~ly~~g~~~---~~v  308 (387)
                      ..    ........+.. ++++++.+..+ ..++.+|..++..+.+...  .+. ...+ ...++.+++.....   ..+
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~-~~~~~s~~~~~~~~~~~~~~~~~~i  362 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGP--WTE-WAATLTVSGTRAVGVAASPRTAYEV  362 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSS--CCE-EEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             cccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCC--CCe-EEEEEecCCCEEEEEEcCCCCCCEE
Confidence            21    11111122332 67776665433 4566678887777766532  111 1122 34566666665322   368


Q ss_pred             EEEeCCCCceEEcc
Q 044903          309 SKYDEVMDDWKEVV  322 (387)
Q Consensus       309 ~~yd~~~~~W~~v~  322 (387)
                      +.+|.++.+.+.+.
T Consensus       363 ~~~d~~~g~~~~l~  376 (662)
T 3azo_A          363 VELDTVTGRARTIG  376 (662)
T ss_dssp             EEEETTTCCEEEEE
T ss_pred             EEEECCCCceEEee
Confidence            88899888877764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=91.78  E-value=8.1  Score=37.37  Aligned_cols=107  Identities=13%  Similarity=-0.022  Sum_probs=58.6

Q ss_pred             eEEEECC-EEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC----CeEEEEeCCCCceEEc
Q 044903          247 DAVGWKG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS----CTLSKYDEVMDDWKEV  321 (387)
Q Consensus       247 ~~v~~~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~----~~v~~yd~~~~~W~~v  321 (387)
                      .+...+| .++++.+....+.+||+++++-+.+.....   .... ..-+|+..++...+    ..|++||.++.+++.+
T Consensus       115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~-~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l  190 (582)
T 3o4h_A          115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFV-SDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  190 (582)
T ss_dssp             EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEE-EEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred             eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEE-ECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence            3455566 355555544455688998887666543211   1122 22344443333222    5699999999888766


Q ss_pred             cccccccCceeEEEeCCeEEEEecCCc--eEEEEEecCC
Q 044903          322 VKSDLLKGARHAAAGGGRVCAVCENGG--GIVVVDVKAA  358 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~l~v~gg~~~--~i~v~d~~~~  358 (387)
                      ....... ......-+|+.++.+..++  .++++|..++
T Consensus       191 ~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          191 DSGEGSF-SSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             CCSSCEE-EEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             ecCCCcc-ccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence            4322111 1223344666555544444  7888988754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=91.67  E-value=7.1  Score=34.95  Aligned_cols=205  Identities=12%  Similarity=0.031  Sum_probs=98.9

Q ss_pred             eeEEEe-CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-CC---c-eeeeEEee-CCEEEEEecCCCCCCCCC
Q 044903          140 VQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TP---R-RWCAAGYS-RGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       140 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-~~---r-~~~~~~~~-~~~iyv~GG~~~~~~~~~  212 (387)
                      ..++.. ++++|+.......  .. ..++.++  +.+-...|... ..   . .-+..+.. +++|||+.....   ...
T Consensus        20 ~~va~~~~g~~~v~~~~~~~--~~-~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~---~~~   91 (343)
T 2qe8_A           20 GNITLTPDGRLFLSLHQFYQ--PE-MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ---SKS   91 (343)
T ss_dssp             EEEEECTTSCEEEEECGGGC--CS-CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH---HTS
T ss_pred             ceEEECCCCCEEEEeCCCCC--Cc-eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC---cCC
Confidence            344443 6788887432111  11 4677777  44444333211 11   1 11222222 478999853210   011


Q ss_pred             CceEEEEeCCCCccccCeEEcCCCCCCc--ccccceeEEEE--CCEEEEEee---eCCeEEEEECCCC-ceeeccc--cc
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTGELKDGR--FSREAIDAVGW--KGKLCLVNV---KGAEGAVYDVVAN-TWDDMRE--GM  282 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~--~~~~~~~~v~~--~g~lyv~gg---~~~~i~~yD~~~~-~W~~~~~--~~  282 (387)
                      ...+.+||+.+++    -...-.++...  ........++-  +|.+|+...   ....+.+||+.++ .|+.+..  .+
T Consensus        92 ~~~i~~~d~~tg~----~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~  167 (343)
T 2qe8_A           92 VPKLVAWDTLNNQ----LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI  167 (343)
T ss_dssp             CCEEEEEETTTTE----EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred             CCeEEEEECCCCe----EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence            2478999999887    43322222110  00011223333  478999865   4478999999765 5665532  11


Q ss_pred             -c-------CC--------------C-CC-cEEEEe--CCeEEEEeCCCCeEEEEeCCC--C-------ceEEccccccc
Q 044903          283 -V-------RG--------------W-RG-PVAAMD--EEVLYGIDENSCTLSKYDEVM--D-------DWKEVVKSDLL  327 (387)
Q Consensus       283 -~-------~~--------------~-~~-~~~~~~--~g~ly~~g~~~~~v~~yd~~~--~-------~W~~v~~~~~~  327 (387)
                       +       .+              + .+ ..+++.  +..||+.......++++|...  +       .+..+......
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~  247 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK  247 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEEC
T ss_pred             cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccC
Confidence             0       00              0 01 112222  335777765556788887531  0       01111100000


Q ss_pred             cCce-eEEEeCCeEEEEecCCceEEEEEec
Q 044903          328 KGAR-HAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       328 ~~~~-~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      ...- .++.-+|.||+....++.|.+||+.
T Consensus       248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~  277 (343)
T 2qe8_A          248 PICDGISIDKDHNIYVGDLAHSAIGVITSA  277 (343)
T ss_dssp             CSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence            0111 2333478888887677888999883

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=91.05  E-value=3.7  Score=40.23  Aligned_cols=119  Identities=16%  Similarity=0.160  Sum_probs=70.0

Q ss_pred             eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc-cc--cceeEEEECCEEEEEeeeCCeEE
Q 044903          190 AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF-SR--EAIDAVGWKGKLCLVNVKGAEGA  266 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~-~~--~~~~~v~~~g~lyv~gg~~~~i~  266 (387)
                      +.++.+++|||....         ..+..+|..|++..  |+.-...+.... .+  .....++.++++|+.. ....+.
T Consensus        63 ~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t-~dg~l~  130 (582)
T 1flg_A           63 QAIVSDGVIYVTASY---------SRLFALDAKTGKRL--WTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-LDASVV  130 (582)
T ss_dssp             CCEEETTEEEEEETT---------TEEEEEESSSCCEE--EEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-TTTEEE
T ss_pred             ccEEECCEEEEEcCC---------CCEEEEECCCCcEE--EEEcCCCCcccccccccCCCccEEECCEEEEEe-CCCEEE
Confidence            446789999998642         13789999998866  987654332110 00  0122356789998763 235899


Q ss_pred             EEECCCC--ceeeccccccCCC-CCcEEEEeCC------eEEEEeC-----CCCeEEEEeCCCC--ceEE
Q 044903          267 VYDVVAN--TWDDMREGMVRGW-RGPVAAMDEE------VLYGIDE-----NSCTLSKYDEVMD--DWKE  320 (387)
Q Consensus       267 ~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~g------~ly~~g~-----~~~~v~~yd~~~~--~W~~  320 (387)
                      ++|.++.  .|+.-......+. ...+.++.++      .||+-..     .++.|+.||.++.  .|+.
T Consensus       131 AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             EEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence            9999876  6985432111111 0112223345      5665321     2578999998765  5864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=90.79  E-value=9.6  Score=34.81  Aligned_cols=63  Identities=11%  Similarity=0.134  Sum_probs=37.9

Q ss_pred             eCCeEEEEeCC---------CCeEEEEeCCCCceEEccccccccCceeE-EEeCCe--EEEEecCCceEEEEEecCC
Q 044903          294 DEEVLYGIDEN---------SCTLSKYDEVMDDWKEVVKSDLLKGARHA-AAGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~g~ly~~g~~---------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~--l~v~gg~~~~i~v~d~~~~  358 (387)
                      .++++|+....         .+.|.++|.++.+=  +...+.......+ +.-+|+  +|+...+++.+.|||..+.
T Consensus       277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            35789997531         35799999987643  3333332233333 344555  4444335789999999854

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=90.56  E-value=7.9  Score=36.27  Aligned_cols=142  Identities=13%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC----CeEEEEECC
Q 044903          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVV  271 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~  271 (387)
                      +.|||+-..         ..+.++|+.+++    ...+..... .   -...++.-+|.||+.....    ..+..++..
T Consensus       153 g~Lyv~D~~---------~~I~~id~~~g~----v~~~~~~~~-~---P~giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          153 DDLYWVGQR---------DAFRHVDFVNQY----VDIKTTNIG-Q---CADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CEEEEECBT---------SCEEEEETTTTE----EEEECCCCS-C---EEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             CEEEEEeCC---------CCEEEEECCCCE----EEEeecCCC-C---ccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            789987321         578999998888    666653111 0   0122333456799885422    234555543


Q ss_pred             CCceeeccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCce-EEccccccccCceeEE-EeCC-eEEEEecC
Q 044903          272 ANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDW-KEVVKSDLLKGARHAA-AGGG-RVCAVCEN  346 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W-~~v~~~~~~~~~~~~~-~~~~-~l~v~gg~  346 (387)
                       ..+..... .........+++.  +|.||+.....+.|++||+++..- +.+...........++ .-+| .|||.-..
T Consensus       216 -~~~~~~~~-~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          216 -SGFTERLS-LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             -GTTCCEEE-EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred             -CCeecccc-ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence             22321000 1111111123332  688999987778899999986655 3332221111122233 3344 59998777


Q ss_pred             CceEEEEEec
Q 044903          347 GGGIVVVDVK  356 (387)
Q Consensus       347 ~~~i~v~d~~  356 (387)
                      .+.|.++|..
T Consensus       294 ~~~I~~~~~d  303 (433)
T 4hw6_A          294 KHCIYRVDYN  303 (433)
T ss_dssp             TTEEEEEEBC
T ss_pred             CCEEEEEeCC
Confidence            7899998865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=90.24  E-value=5  Score=36.18  Aligned_cols=147  Identities=8%  Similarity=-0.067  Sum_probs=70.8

Q ss_pred             CCccEEEeCCCCceeeCCCCCCCceeeeEEe-eCCE-EEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGY-SRGA-VYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       163 ~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      ...++++|..+...+.+............+. -+++ |+.......    .....+.++|+.+++    -+.+..++...
T Consensus       215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~~l~~~d~~~g~----~~~l~~~~~~~  286 (388)
T 3pe7_A          215 DARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKG----SPDRFIYSADPETLE----NRQLTSMPACS  286 (388)
T ss_dssp             SCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETT----CCCEEEEEECTTTCC----EEEEEEECCEE
T ss_pred             cceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCC----CCcceEEEEecCCCc----eEEEEcCCCce
Confidence            4578999998888777765332111111122 2444 544332211    112358999999988    66554433200


Q ss_pred             ---ccccceeEEEECCE-EEEEe--------eeCCeEEEEECCCCceeecccccc-C---------CCCCcEEEEeCCeE
Q 044903          241 ---FSREAIDAVGWKGK-LCLVN--------VKGAEGAVYDVVANTWDDMREGMV-R---------GWRGPVAAMDEEVL  298 (387)
Q Consensus       241 ---~~~~~~~~v~~~g~-lyv~g--------g~~~~i~~yD~~~~~W~~~~~~~~-~---------~~~~~~~~~~~g~l  298 (387)
                         .... .....-+|+ |++..        .....++.+|+++++-+.+..... .         ....++..-.+..|
T Consensus       287 ~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l  365 (388)
T 3pe7_A          287 HLMSNYD-GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQI  365 (388)
T ss_dssp             EEEECTT-SSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred             eeeecCC-CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEE
Confidence               0000 011222333 33221        112578889988876655542111 0         01122222223356


Q ss_pred             EEEeCCCC--eEEEEeCCCCce
Q 044903          299 YGIDENSC--TLSKYDEVMDDW  318 (387)
Q Consensus       299 y~~g~~~~--~v~~yd~~~~~W  318 (387)
                      ++.....+  .|+.+|.....|
T Consensus       366 ~~~s~~~g~~~l~~~~l~~~~~  387 (388)
T 3pe7_A          366 LFTSDVHGKPALYLATLPESVW  387 (388)
T ss_dssp             EEEECTTSSCEEEEEECCGGGG
T ss_pred             EEEecCCCceeEEEEECChhcc
Confidence            65554333  588888877766

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=90.18  E-value=13  Score=35.25  Aligned_cols=200  Identities=15%  Similarity=0.109  Sum_probs=101.8

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceee--CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF--GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~--l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++++|++.|         +.+|.||..+++..+  -+.++.   --++....+++|++-|.          ..+.||..+
T Consensus       158 ~~~~yfFkG---------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~----------~y~rfd~~~  215 (460)
T 1qhu_A          158 DEGILFFQG---------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGN----------QFLRFNPVS  215 (460)
T ss_dssp             SSEEEEEET---------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETT----------EEEEECTTT
T ss_pred             CCeEEEEec---------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEECC----------EEEEEcCcc
Confidence            678888887         467999998876443  122322   23344457899998775          234555543


Q ss_pred             Ccccc--------CeEEcCCCCCC--------------ccc-ccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceee-
Q 044903          224 GEKNS--------RWEKTGELKDG--------------RFS-REAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDD-  277 (387)
Q Consensus       224 ~~~~~--------~W~~~~~~~~~--------------~~~-~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~-  277 (387)
                      .+..-        .|..++....+              ... .....++..  +|++|++-|  ...+.+|...+.+.. 
T Consensus       216 ~~v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg--~~yWR~~~~~~~~~p~  293 (460)
T 1qhu_A          216 GEVPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG--SHYWRLDTNRDGWHSW  293 (460)
T ss_dssp             CCCCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET--TEEEECTTGGGCCCCE
T ss_pred             CcccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC--CEEEEEecCCCCcCcc
Confidence            32100        02222211100              000 012344543  689998855  355666664433221 


Q ss_pred             -ccc---cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccc----------cccc---cCceeEEE--eCC
Q 044903          278 -MRE---GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVK----------SDLL---KGARHAAA--GGG  338 (387)
Q Consensus       278 -~~~---~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~----------~~~~---~~~~~~~~--~~~  338 (387)
                       +..   +++..  -.++...++++|++-  ...+++|+..+. .+.+..          .|..   ..--+++.  ..+
T Consensus       294 ~Is~~WpglP~~--IDAAf~~~~~~yfFk--G~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~~~~~  368 (460)
T 1qhu_A          294 PIAHQWPQGPST--VDAAFSWEDKLYLIQ--DTKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSS  368 (460)
T ss_dssp             EGGGTCTTSCSS--CSEEEEETTEEEEEE--TTEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCC
T ss_pred             chhhhccCCCCC--CcEEEEECCeEEEEe--CCEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEEeCCCC
Confidence             111   11222  234445578999995  457899986531 222211          1111   11122332  468


Q ss_pred             eEEEEecCCceEEEEEecCCCCCceeEE--cCCCCceeeEE
Q 044903          339 RVCAVCENGGGIVVVDVKAAAAPTIFVV--DTPLGFEALSV  377 (387)
Q Consensus       339 ~l~v~gg~~~~i~v~d~~~~~~~~~W~~--~~~~~~~~~~~  377 (387)
                      ++|++  .|...+.||.... +-.++..  .+|...+.+..
T Consensus       369 ktyfF--kG~~ywryd~~~~-Pr~i~~~~~gi~~~vdAaf~  406 (460)
T 1qhu_A          369 RLHIM--AGRRLWWLDLKSG-AQATWTELPWPHEKVDGALC  406 (460)
T ss_dssp             EEEEE--ETTEEEEEEGGGG-GGCCCEEECCSCSCCSEEEE
T ss_pred             EEEEE--ECCEEEEEECCCC-ccchhhhCCCCCCCcCEEEe
Confidence            99999  4678889998844 2233432  34555554443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=90.09  E-value=21  Score=37.52  Aligned_cols=133  Identities=11%  Similarity=-0.003  Sum_probs=69.6

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEE-EEECCCCceeeccccccCCCCCcEEE-
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGA-VYDVVANTWDDMREGMVRGWRGPVAA-  292 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~-~yD~~~~~W~~~~~~~~~~~~~~~~~-  292 (387)
                      .+.++|..+..    -..+...+....   ...+.. +|+.++.......++ +||..+..-..+.. .. . ....++ 
T Consensus       318 ~i~~~~~~~~~----~~~~~~~~~~~~---~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~-~~-~-~~~~~~~  386 (1045)
T 1k32_A          318 QAFIQDVSGTY----VLKVPEPLRIRY---VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEE-NL-G-NVFAMGV  386 (1045)
T ss_dssp             EEEEECTTSSB----EEECSCCSCEEE---EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCC-CC-C-SEEEEEE
T ss_pred             EEEEEcCCCCc----eEEccCCCcceE---EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecC-Cc-c-ceeeeEE
Confidence            56777777665    554432221010   011222 565444433345677 88988776555541 11 1 111222 


Q ss_pred             EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecC-C---------ceEEEEEecCC
Q 044903          293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN-G---------GGIVVVDVKAA  358 (387)
Q Consensus       293 ~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~-~---------~~i~v~d~~~~  358 (387)
                      ..+|+..+++..++.+++||.++.+-..+..............-+|+.+++++. +         ..++++|+.++
T Consensus       387 SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          387 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence            235665556666789999999988766554221111112233446665555432 1         47899998754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=89.90  E-value=17  Score=36.23  Aligned_cols=132  Identities=12%  Similarity=0.006  Sum_probs=73.1

Q ss_pred             ceEEEEeCCCC--ccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC---CeEEEEECCCC---ceeeccccccCC
Q 044903          214 KSVEKWDLMNG--EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVAN---TWDDMREGMVRG  285 (387)
Q Consensus       214 ~~v~vyd~~t~--~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~---~W~~~~~~~~~~  285 (387)
                      +.++++|..+.  +    |..+..-....    .......+++||+.+..+   ..+...|+.+.   .|+.+-+.....
T Consensus       259 ~~i~~~d~~~~~~~----~~~l~~~~~~~----~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  330 (693)
T 3iuj_A          259 NRLYVKDLSQENAP----LLTVQGDLDAD----VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV  330 (693)
T ss_dssp             CEEEEEETTSTTCC----CEEEECSSSSC----EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             cEEEEEECCCCCCc----eEEEeCCCCce----EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE
Confidence            57888898765  5    77765322111    122334578899886543   67899998763   588764322211


Q ss_pred             CCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCceEEccccccccCceeEEE--eC-CeEEEEecC---CceEEEEEecC
Q 044903          286 WRGPVAAMDEEVLYGIDENSC--TLSKYDEVMDDWKEVVKSDLLKGARHAAA--GG-GRVCAVCEN---GGGIVVVDVKA  357 (387)
Q Consensus       286 ~~~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~-~~l~v~gg~---~~~i~v~d~~~  357 (387)
                        - .....++.|++....++  .|++||.++.....+.. +... ....+.  .+ +.|++....   -..++.+|+.+
T Consensus       331 --~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~-p~~~-~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          331 --L-TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVAL-PGLG-SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             --E-EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECC-SSSS-EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             --E-EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeec-CCCc-eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence              1 44556777766654444  58999998765555432 1111 111111  13 344444222   25788888764


Q ss_pred             C
Q 044903          358 A  358 (387)
Q Consensus       358 ~  358 (387)
                      +
T Consensus       406 g  406 (693)
T 3iuj_A          406 G  406 (693)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=89.72  E-value=17  Score=36.10  Aligned_cols=92  Identities=10%  Similarity=-0.054  Sum_probs=46.4

Q ss_pred             eEEEEECCC-CceeeccccccCCC--CCcEEEEeCCeEEEEeC----CCCeEEEEeCCCCceEEccccccc----cCcee
Q 044903          264 EGAVYDVVA-NTWDDMREGMVRGW--RGPVAAMDEEVLYGIDE----NSCTLSKYDEVMDDWKEVVKSDLL----KGARH  332 (387)
Q Consensus       264 ~i~~yD~~~-~~W~~~~~~~~~~~--~~~~~~~~~g~ly~~g~----~~~~v~~yd~~~~~W~~v~~~~~~----~~~~~  332 (387)
                      .+.++|+.+ .+-..+........  ...+. -.+..|++...    ....|++||+++.+...+......    .....
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  342 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL  342 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence            677788877 65443332100000  11122 23344555432    234699999998877665432211    11122


Q ss_pred             EEEeCCeEEEEecCC--ceEEEEEec
Q 044903          333 AAAGGGRVCAVCENG--GGIVVVDVK  356 (387)
Q Consensus       333 ~~~~~~~l~v~gg~~--~~i~v~d~~  356 (387)
                      ...-+|++++.+..+  ..++.+|..
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~  368 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSK  368 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSS
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCC
Confidence            344577766665544  356666654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=89.41  E-value=18  Score=35.93  Aligned_cols=100  Identities=9%  Similarity=-0.004  Sum_probs=50.4

Q ss_pred             eEEEEeCCC-CccccCeEEcCCCCCCcccccceeEEEECCE-EEEEeeeC----CeEEEEECCCCceeeccccccCCCC-
Q 044903          215 SVEKWDLMN-GEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG----AEGAVYDVVANTWDDMREGMVRGWR-  287 (387)
Q Consensus       215 ~v~vyd~~t-~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg~~----~~i~~yD~~~~~W~~~~~~~~~~~~-  287 (387)
                      .+.++|..+ .+    -..+......... -...+. -+|+ |++.....    ..+..+|+.+.+...+-.....++. 
T Consensus       264 ~l~~~d~~~~~~----~~~~~~~~~~~~~-~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  337 (741)
T 2ecf_A          264 KLGVISPAEQAQ----TQWIDLGKEQDIY-LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP  337 (741)
T ss_dssp             EEEEECSSTTCC----CEEECCCSCSSEE-EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred             EEEEEECCCCCc----eEEecCCCCcceE-EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence            678889888 76    4444311100000 011122 3444 44443311    5788899988877655321111110 


Q ss_pred             --CcEEEEeCCeEEEEeCCCC--eEEEEeCCCCceEEc
Q 044903          288 --GPVAAMDEEVLYGIDENSC--TLSKYDEVMDDWKEV  321 (387)
Q Consensus       288 --~~~~~~~~g~ly~~g~~~~--~v~~yd~~~~~W~~v  321 (387)
                        .......+|++++.+..++  .|+.+|.+.. ...+
T Consensus       338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l  374 (741)
T 2ecf_A          338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL  374 (741)
T ss_dssp             CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES
T ss_pred             cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee
Confidence              1122234667666665555  5777787665 5444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=89.22  E-value=13  Score=34.01  Aligned_cols=68  Identities=7%  Similarity=-0.025  Sum_probs=39.1

Q ss_pred             CCEEEEEeeeCCeEEEEECCC-Cce-eecccc--ccCC-------C---CC-cEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903          252 KGKLCLVNVKGAEGAVYDVVA-NTW-DDMREG--MVRG-------W---RG-PVAAMDEEVLYGIDENSCTLSKYDEVMD  316 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~-~~W-~~~~~~--~~~~-------~---~~-~~~~~~~g~ly~~g~~~~~v~~yd~~~~  316 (387)
                      +|++.+.++. ..+.+||..+ .+- ..+...  ....       .   .. ......+++..+.++.++.|.+||..+.
T Consensus       296 ~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          296 SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            5666666666 7999999975 321 111110  0000       0   00 0222335566677788899999999887


Q ss_pred             ceEE
Q 044903          317 DWKE  320 (387)
Q Consensus       317 ~W~~  320 (387)
                      +-..
T Consensus       375 ~~~~  378 (447)
T 3dw8_B          375 RDIT  378 (447)
T ss_dssp             CEEE
T ss_pred             ccee
Confidence            6544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=89.16  E-value=13  Score=33.85  Aligned_cols=179  Identities=10%  Similarity=-0.003  Sum_probs=89.4

Q ss_pred             CCccEEEeCCC--CceeeCCCCC---CC--ceeeeEEee---CC--EEEEEecCCCCCCCCCCceEEEE--eCCCCcccc
Q 044903          163 LTRPLIFDPIC--RTWTFGPELV---TP--RRWCAAGYS---RG--AVYVASGIGSQFSSDVAKSVEKW--DLMNGEKNS  228 (387)
Q Consensus       163 ~~~~~vydp~t--~~W~~l~~~~---~~--r~~~~~~~~---~~--~iyv~GG~~~~~~~~~~~~v~vy--d~~t~~~~~  228 (387)
                      ...+++||+.+  .+-+++....   ..  -.-++....   ++  +|||+.-..      .-..+|+|  |+.+..   
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~------~~s~ielf~~d~~~~~---  152 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG------SSSTVEVFKFQEEEKS---  152 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST------TCCEEEEEEEETTTTE---
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC------CCCeEEEEEEECCCCE---
Confidence            45689999983  3555543211   11  112222222   24  578875431      12355665  454454   


Q ss_pred             CeEEcCCCCCCcccccceeEEEECCEEEEEeee----------------C-CeEEEEECCCCceeeccccccCCCCCcEE
Q 044903          229 RWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK----------------G-AEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       229 ~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~----------------~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                       ...+......+..+-+-..+.-+|.+|+-+..                . ..++.||+.  +.+.+...+...   ..+
T Consensus       153 -~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~p---NGi  226 (355)
T 3sre_A          153 -LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFA---NGI  226 (355)
T ss_dssp             -EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSE---EEE
T ss_pred             -EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCccc---Ccc
Confidence             55444333333332333455568999886431                0 357778873  444443322221   223


Q ss_pred             EEe--CCeEEEEeCCCCeEEEEeCCCC-ceEEccccccccCceeEE-Ee-CCeEEEEec-CCceEEEEEec
Q 044903          292 AMD--EEVLYGIDENSCTLSKYDEVMD-DWKEVVKSDLLKGARHAA-AG-GGRVCAVCE-NGGGIVVVDVK  356 (387)
Q Consensus       292 ~~~--~g~ly~~g~~~~~v~~yd~~~~-~W~~v~~~~~~~~~~~~~-~~-~~~l~v~gg-~~~~i~v~d~~  356 (387)
                      +..  +..||+.+...+.|++||.+.+ +............+=.++ .. +|.+|+.+. ++..+..||+.
T Consensus       227 a~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          227 NISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             eECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            332  4479999876788999997643 333221111111122233 34 489999544 44555555655

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=88.98  E-value=6.1  Score=37.81  Aligned_cols=144  Identities=13%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE---------CCE-EEEEeeeC--
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---------KGK-LCLVNVKG--  262 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~---------~g~-lyv~gg~~--  262 (387)
                      +++|||+-...        ..+.+.|++++.    -..+.......+.  ......+         +|. ||+..-..  
T Consensus       151 ~~~Lyv~~~~~--------~~i~~ID~~~~~----v~~l~~~~~~~~~--~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          151 KDHLYICYDGH--------KAIQLIDLKNRM----LSSPLNINTIPTN--RIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             EEEEEEEEETE--------EEEEEEETTTTE----EEEEECCTTSSCS--BEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCEEEEEECCC--------CeEEEEECCCCE----EEEEEccCccccC--CCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            46789885431        368889999988    7776544331121  1223333         554 88875433  


Q ss_pred             ----CeEEEEECCC-Ccee------eccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCC-------CC-ceEEc
Q 044903          263 ----AEGAVYDVVA-NTWD------DMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEV-------MD-DWKEV  321 (387)
Q Consensus       263 ----~~i~~yD~~~-~~W~------~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~-------~~-~W~~v  321 (387)
                          ..+..++... ..|.      .++. ..   ....+++.  ++.||+.....+.|++||++       +. .|+..
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAA-YK---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEE-ES---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             cccCceEEEEecCCCCceeecccceeecc-CC---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                3477787654 3564      2221 11   12334443  47899998878899999997       44 45432


Q ss_pred             c-----------ccccccCceeEE-EeCCe-EEEEecCCceEEEEEec
Q 044903          322 V-----------KSDLLKGARHAA-AGGGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       322 ~-----------~~~~~~~~~~~~-~~~~~-l~v~gg~~~~i~v~d~~  356 (387)
                      .           ..+.....+.++ .-+|+ |||.-...+.|+.+|..
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            1           122222233344 33555 88886667889987765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.51  E-value=13  Score=33.08  Aligned_cols=172  Identities=9%  Similarity=0.034  Sum_probs=82.7

Q ss_pred             CCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCC-CCCcccccceeEE
Q 044903          172 ICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL-KDGRFSREAIDAV  249 (387)
Q Consensus       172 ~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~-~~~~~~~~~~~~v  249 (387)
                      .-.+|+.+.. +......+.... .+.+|++|..+         .+...+-.-.+    |+.+... +.+..  ......
T Consensus        23 ~g~~W~~~~~-~~~~~~~~v~~~~~~~~~~~G~~g---------~i~~s~DgG~t----W~~~~~~~~~~~~--~~~~i~   86 (327)
T 2xbg_A           23 DYNPWEAIQL-PTTATILDMSFIDRHHGWLVGVNA---------TLMETRDGGQT----WEPRTLVLDHSDY--RFNSVS   86 (327)
T ss_dssp             SSCCEEEEEC-SCSSCEEEEEESSSSCEEEEETTT---------EEEEESSTTSS----CEECCCCCSCCCC--EEEEEE
T ss_pred             CCCCceEeec-CCCCcEEEEEECCCCcEEEEcCCC---------eEEEeCCCCCC----CeECCCCCCCCCc--cEEEEE
Confidence            3457887652 222223333333 45778865321         12222112234    9998632 11111  112333


Q ss_pred             EECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEcccccccc
Q 044903          250 GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       250 ~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~  328 (387)
                      ..++.+|++|..+ .++.-+=.-.+|+.+.......-....++ ..++++|+.+. .+.+++-+-...+|+.+..... .
T Consensus        87 ~~~~~~~~~g~~g-~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~~~~~~~-~  163 (327)
T 2xbg_A           87 FQGNEGWIVGEPP-IMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQALVQEAI-G  163 (327)
T ss_dssp             EETTEEEEEEETT-EEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEEEECSCC-C
T ss_pred             ecCCeEEEEECCC-eEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEEeecCCC-c
Confidence            4567888876433 23332112458998864211110111232 35678888774 5667666555778999864322 1


Q ss_pred             CceeEEE-eCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          329 GARHAAA-GGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       329 ~~~~~~~-~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      ..+.++. .++.+++++ ..+.++..+..   .+..|+.
T Consensus       164 ~~~~~~~~~~~~~~~~g-~~G~~~~S~d~---gG~tW~~  198 (327)
T 2xbg_A          164 VMRNLNRSPSGEYVAVS-SRGSFYSTWEP---GQTAWEP  198 (327)
T ss_dssp             CEEEEEECTTSCEEEEE-TTSSEEEEECT---TCSSCEE
T ss_pred             ceEEEEEcCCCcEEEEE-CCCcEEEEeCC---CCCceeE
Confidence            2233333 356777664 33445544322   1246775

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.98  E-value=1.7  Score=39.45  Aligned_cols=111  Identities=9%  Similarity=-0.022  Sum_probs=60.3

Q ss_pred             CCEEEEEeeeCCeEEEEECCCC--ceeecccc--ccCCCCCcEEEEeCCeEEEEe-CCCCeEEEEeCCCCceEEcccccc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVAN--TWDDMREG--MVRGWRGPVAAMDEEVLYGID-ENSCTLSKYDEVMDDWKEVVKSDL  326 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~--~~~~~~~~~~~~~~g~ly~~g-~~~~~v~~yd~~~~~W~~v~~~~~  326 (387)
                      +|.+|+.+ ....++++|.+++  .|+.-...  .+.....+.. ..++.+|++. ..+|.++.+|.++..|+.-...+.
T Consensus        10 ~~~V~v~t-~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~-~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           10 SDILIAAD-VEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR-LETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEEE-TTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCT-TTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CCEEEEEe-CCCeEEEEECCCCcEEEEecCCccCCcEEecCCcc-ccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            44455443 3346788887765  68854331  1111111111 1356788876 468999999998776654323322


Q ss_pred             ccC--cee----EEE------eCCeEEEEecCCceEEEEEecCCCCCceeEE
Q 044903          327 LKG--ARH----AAA------GGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       327 ~~~--~~~----~~~------~~~~l~v~gg~~~~i~v~d~~~~~~~~~W~~  366 (387)
                      ...  ++.    -+.      ..+..+++|..+..++.+|..++  -..|+.
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG--~~~W~~  137 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG--EIISAF  137 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC--CEEEEE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC--cEEEEE
Confidence            211  111    112      14455556567788999998843  356876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=87.96  E-value=23  Score=35.21  Aligned_cols=143  Identities=8%  Similarity=-0.051  Sum_probs=72.3

Q ss_pred             CccEEEeCCCCcee--eCCCCCC-CceeeeEE-eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCC
Q 044903          164 TRPLIFDPICRTWT--FGPELVT-PRRWCAAG-YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vydp~t~~W~--~l~~~~~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~  239 (387)
                      ..+++++..|.+-.  .+...+. +....... .-+++..++.....    .....++++|..+.+    |..+..-...
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~----~~~~~l~~~~~~~~~----~~~l~~~~~~  273 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG----WSENDVYWKRPGEKD----FRLLVKGVGA  273 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET----TTEEEEEEECTTCSS----CEEEEECSSC
T ss_pred             CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC----CCceEEEEEcCCCCc----eEEeecCCCc
Confidence            45888888877532  2222111 11112222 22444333332211    023356677776667    8777532221


Q ss_pred             cccccceeEEEECCEEEEEeeeC---CeEEEEECCCCc---eeeccccccCCCCCcEEEEeCCeEEEEeCCCC--eEEEE
Q 044903          240 RFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANT---WDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSKY  311 (387)
Q Consensus       240 ~~~~~~~~~v~~~g~lyv~gg~~---~~i~~yD~~~~~---W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~--~v~~y  311 (387)
                      .     ...+.-+|.+|+.+..+   ..+..+|+.+..   |+.+-..-+ ...-..++..++++++....++  .|+.+
T Consensus       274 ~-----~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          274 K-----YEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS-SASLLSVSIVGGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             C-----EEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS-SCEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             e-----EEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC-CCeEEEEEEECCEEEEEEEECCEEEEEEE
Confidence            1     22233577766664422   688999987654   877643211 1111233445788888765555  47777


Q ss_pred             eCCCCceEE
Q 044903          312 DEVMDDWKE  320 (387)
Q Consensus       312 d~~~~~W~~  320 (387)
                      |.+...-..
T Consensus       348 ~~~g~~~~~  356 (695)
T 2bkl_A          348 TLKGKPVRT  356 (695)
T ss_dssp             ETTCCEEEE
T ss_pred             eCCCCeeEE
Confidence            875543333

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=87.26  E-value=16  Score=37.84  Aligned_cols=104  Identities=10%  Similarity=-0.108  Sum_probs=56.8

Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEcc-------
Q 044903          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVV-------  322 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~-------  322 (387)
                      ..|++.+.++.+..+.++|+.+.+-...-.  ..+ .-.+++ ..+++..+.+..++.|.+||.++..-....       
T Consensus        67 spg~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~-~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~  143 (902)
T 2oaj_A           67 VKGIYLVVINAKDTVYVLSLYSQKVLTTVF--VPG-KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS  143 (902)
T ss_dssp             ETTTEEEEEETTCEEEEEETTTCSEEEEEE--CSS-CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred             cCCCEEEEEECcCeEEEEECCCCcEEEEEc--CCC-CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence            346644445555789999998764321111  011 011222 124566667778899999999887543211       


Q ss_pred             --ccccccCc-eeEEEe--CCeEEEEecCCceEEEEEecCC
Q 044903          323 --KSDLLKGA-RHAAAG--GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       323 --~~~~~~~~-~~~~~~--~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                        ........ .+++..  ++.++++|..++.+ +||+...
T Consensus       144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~  183 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN  183 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT
T ss_pred             ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC
Confidence              01111122 223333  33677777777788 9998754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=87.13  E-value=14  Score=33.31  Aligned_cols=133  Identities=11%  Similarity=0.052  Sum_probs=70.3

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEE-
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA-  291 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~-  291 (387)
                      .+.++|+.+.+    -.........      ...+.  -+|++.+.+. ...+.+++..++.-............-.++ 
T Consensus       158 ~i~iwd~~~~~----~~~~~~~~~~------V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  226 (365)
T 4h5i_A          158 IMRIIDPSDLT----EKFEIETRGE------VKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKIN  226 (365)
T ss_dssp             EEEEEETTTTE----EEEEEECSSC------CCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred             EEEEeECCCCc----EEEEeCCCCc------eEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence            78889998877    3322211111      11222  2566655544 346777777666543221111111001112 


Q ss_pred             EEeCCeEEEEeCCCC----eEEEEeCCCCceEEccc--cccccCce--eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          292 AMDEEVLYGIDENSC----TLSKYDEVMDDWKEVVK--SDLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       292 ~~~~g~ly~~g~~~~----~v~~yd~~~~~W~~v~~--~~~~~~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ...+++.++.+..++    .++.||...........  ........  ..+..+|++++.|+.++.|.+||+.+.
T Consensus       227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            234566666554333    47788887766554332  22222222  233458899999888999999999854

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=86.70  E-value=18  Score=32.65  Aligned_cols=104  Identities=15%  Similarity=0.073  Sum_probs=51.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEee--CCEEEEEecCCCC-CCCCCCceEEEEeCCCCccccCeEEcCCCCCCc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~-~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~  240 (387)
                      ..+++||+.+.+-..  .++..... ..+..  +..+||....... ..+.....+.+||..+.+.   -..++ ++..+
T Consensus        31 ~~v~v~D~~t~~~~~--~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---~~~i~-~~~~~  103 (361)
T 2oiz_A           31 SRVHVYDYTNGKFLG--MVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---EKEIS-LPPKR  103 (361)
T ss_dssp             CEEEEEETTTCCEEE--EEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---EEEEE-ECTTB
T ss_pred             CeEEEEECCCCeEEE--EecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---EEEEE-cCccc
Confidence            467899988876543  22222222 22222  4578988632110 0112234789999987651   22222 11110


Q ss_pred             c--ccccee-EEEECC-EEEEEeee-CCeEEEEECCCCc
Q 044903          241 F--SREAID-AVGWKG-KLCLVNVK-GAEGAVYDVVANT  274 (387)
Q Consensus       241 ~--~~~~~~-~v~~~g-~lyv~gg~-~~~i~~yD~~~~~  274 (387)
                      .  ....+. ++.-+| .+|+.... ...+.++|+++++
T Consensus       104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~  142 (361)
T 2oiz_A          104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD  142 (361)
T ss_dssp             CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred             cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence            0  000011 222245 57776544 4688999998764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=86.44  E-value=26  Score=34.26  Aligned_cols=185  Identities=13%  Similarity=-0.029  Sum_probs=99.8

Q ss_pred             CCccEEEeCCCCceeeCCCCCCCceeeeEEe----eCCEEEEEecCCCC---------CCCCCCceEEEEeCCCCccccC
Q 044903          163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGY----SRGAVYVASGIGSQ---------FSSDVAKSVEKWDLMNGEKNSR  229 (387)
Q Consensus       163 ~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~----~~~~iyv~GG~~~~---------~~~~~~~~v~vyd~~t~~~~~~  229 (387)
                      ...+.+.|+.+.+-.++-.+|....-+..+.    -++.+|+.+-...+         ........+-+.|..+.+..  
T Consensus       111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~--  188 (595)
T 1fwx_A          111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA--  188 (595)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE--
T ss_pred             CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE--
Confidence            4678999999988665334554333444443    35678887633210         01133457788999987744  


Q ss_pred             eEEcC-CCCCCcccccceeEEEECC-EEEEEeeeC-------------------------------------CeEEEEEC
Q 044903          230 WEKTG-ELKDGRFSREAIDAVGWKG-KLCLVNVKG-------------------------------------AEGAVYDV  270 (387)
Q Consensus       230 W~~~~-~~~~~~~~~~~~~~v~~~g-~lyv~gg~~-------------------------------------~~i~~yD~  270 (387)
                      |.-.- .-|+       ...+..+| .+|+.....                                     +.+-+.|.
T Consensus       189 ~qI~Vgg~pd-------~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~  261 (595)
T 1fwx_A          189 WQVLVSGNLD-------NCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG  261 (595)
T ss_dssp             EEEEESSCCC-------CEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred             EEEEeCCCcc-------ceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeC
Confidence            65332 1111       11222233 334332111                                     34677788


Q ss_pred             CCCceee-ccccccCCCCCcEEE-Ee-CCeEEEEeCCCCeEEEEeCCCCc-e---------EEccccccccC-ceeEEEe
Q 044903          271 VANTWDD-MREGMVRGWRGPVAA-MD-EEVLYGIDENSCTLSKYDEVMDD-W---------KEVVKSDLLKG-ARHAAAG  336 (387)
Q Consensus       271 ~~~~W~~-~~~~~~~~~~~~~~~-~~-~g~ly~~g~~~~~v~~yd~~~~~-W---------~~v~~~~~~~~-~~~~~~~  336 (387)
                      .+.+... +.. .+.+-.-+.+. .- |..+|+.+..+..+.+||.++.+ +         ..+...+.-.+ .+..+.-
T Consensus       262 ~~~~~~~~~~~-Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~  340 (595)
T 1fwx_A          262 RKEASSLFTRY-IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG  340 (595)
T ss_dssp             SGGGCCSSEEE-EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT
T ss_pred             cccCCceeEEE-EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC
Confidence            7743322 111 11121122222 23 44577777777899999998542 1         11122222233 3445555


Q ss_pred             CCeEEEEecCCceEEEEEecC
Q 044903          337 GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       337 ~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      +|.+|+...-++++.+||+.+
T Consensus       341 dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          341 RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             TSEEEEEETTTTEEEEEEHHH
T ss_pred             CCeEEEEEecCCcEEEEEhhH
Confidence            678999877789999999875

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=85.22  E-value=15  Score=30.50  Aligned_cols=147  Identities=16%  Similarity=0.099  Sum_probs=74.9

Q ss_pred             EeCCEEEEEcCccCCCCCCCCccEEEeCCCCceee------CCCCCCCceeeeEEe-eCCEEEEEecCCCCCCCCCCceE
Q 044903          144 SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTF------GPELVTPRRWCAAGY-SRGAVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       144 ~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~------l~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v  216 (387)
                      ..+|.+|++-|         ..+|.++.....+..      -+.+|... .++... .++++|++-|.          .+
T Consensus        31 ~~~g~~y~Fkg---------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~i-DAa~~~~~~~~iyfFkG~----------~~   90 (207)
T 1pex_A           31 SLRGETMIFKD---------RFFWRLHPQQVDAELFLTKSFWPELPNRI-DAAYEHPSHDLIFIFRGR----------KF   90 (207)
T ss_dssp             EETTEEEEEET---------TEEEEECSSSSCCEEEEHHHHCTTSCSSC-CEEEEETTTTEEEEEETT----------EE
T ss_pred             eCCCcEEEEEC---------CEEEEEeCCCcCCCceehhHhccCCCCCc-cEEEEeccCCcEEEEccC----------EE
Confidence            37899999977         345666654322211      02233221 111111 25899988663          34


Q ss_pred             EEEeCCCCccccCe-EEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCceee-----cc---ccccC
Q 044903          217 EKWDLMNGEKNSRW-EKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDD-----MR---EGMVR  284 (387)
Q Consensus       217 ~vyd~~t~~~~~~W-~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~~-----~~---~~~~~  284 (387)
                      ++|+..+-...  + +.+..+..+.. .....||+.   +|++|++-|  ...+.||..+++=..     +.   .+++.
T Consensus        91 w~~~~~~~~~g--yPk~I~~~GlP~~-~~~IDAA~~~~~~gk~yfFkG--~~ywr~d~~~~~~d~gyPr~i~~~~~Gip~  165 (207)
T 1pex_A           91 WALNGYDILEG--YPKKISELGLPKE-VKKISAAVHFEDTGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFPGIGD  165 (207)
T ss_dssp             EEESTTCCCTT--CSEESTTTTCCTT-CCCCCEEEECTTTSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHSTTSCS
T ss_pred             EEEeCCeeccC--CceeccccCCCCC-CccccEEEEeCCCCEEEEEeC--CEEEEEeCcCccccCCCCccHHHcCCCCCC
Confidence            55553222100  1 22322211110 012344443   489999865  477999987543110     00   11111


Q ss_pred             CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceE
Q 044903          285 GWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWK  319 (387)
Q Consensus       285 ~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~  319 (387)
                        .-.++...+|++|++-  ....++||..+++=.
T Consensus       166 --~iDaAf~~~g~~YfFk--g~~y~rf~~~~~~v~  196 (207)
T 1pex_A          166 --KVDAVYEKNGYIYFFN--GPIQFEYSIWSNRIV  196 (207)
T ss_dssp             --CCSEEEEETTEEEEEE--TTEEEEEETTTTEEE
T ss_pred             --CccEEEEcCCcEEEEE--CCEEEEEeCCccEEe
Confidence              1234445688999995  457999999876533

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=84.96  E-value=5.9  Score=36.23  Aligned_cols=105  Identities=8%  Similarity=-0.032  Sum_probs=56.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCceEEcccc-----
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDENSCTLSKYDEVMDDWKEVVKS-----  324 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~g-~ly~~g~~~~~v~~yd~~~~~W~~v~~~-----  324 (387)
                      +|++.+-++.+..+.++|+.++.=.....  .......+++.. ++ .+.+.++.++.|.+||..+.+-......     
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~  232 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK  232 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence            67888888888889999986553211111  111111233333 33 4667777889999999877643221100     


Q ss_pred             ----------cc--------ccCce-eEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          325 ----------DL--------LKGAR-HAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ----------~~--------~~~~~-~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                                +.        ..... .+.  ..+++.++.+..++.+.+||+...
T Consensus       233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence                      00        00111 122  246777777777889999998744

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=84.15  E-value=31  Score=34.48  Aligned_cols=145  Identities=9%  Similarity=-0.054  Sum_probs=79.4

Q ss_pred             CCccEEEeCCCC--c-eeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCC--CccccCeEEcCCCC
Q 044903          163 LTRPLIFDPICR--T-WTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMN--GEKNSRWEKTGELK  237 (387)
Q Consensus       163 ~~~~~vydp~t~--~-W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t--~~~~~~W~~~~~~~  237 (387)
                      ..+++++|..+.  + |+.+.+-....... ....++.||+....+.     ....+.++|..+  ..    |..+-+-.
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~-----~~~~l~~~d~~~~~~~----~~~l~~~~  362 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA-----PLKKIVRVDLSGSTPR----FDTVVPES  362 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC-----TTCEEEEEECSSSSCE----EEEEECCC
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC-----CCCEEEEEeCCCCccc----cEEEecCC
Confidence            457888998877  6 88775433222222 2345677877754321     134688889877  56    98875322


Q ss_pred             CCcccccceeEEEECCEEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcEEEE--eCCeEEEEeC---CCCeEEE
Q 044903          238 DGRFSREAIDAVGWKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDE---NSCTLSK  310 (387)
Q Consensus       238 ~~~~~~~~~~~v~~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~g~ly~~g~---~~~~v~~  310 (387)
                      ...    .......++.+++.....  ..++++|+..+.-+.+.. ...+. ...+..  .++.|++...   ..+.++.
T Consensus       363 ~~~----l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~-v~~~~~s~d~~~l~~~~ss~~~P~~i~~  436 (741)
T 1yr2_A          363 KDN----LESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGS-ASGLSGRPGDRHAYLSFSSFTQPATVLA  436 (741)
T ss_dssp             SSE----EEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCE-EEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred             CCe----EEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeE-EEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            211    112234478887775554  567788875543344331 00110 011111  1234554432   2357999


Q ss_pred             EeCCCCceEEccc
Q 044903          311 YDEVMDDWKEVVK  323 (387)
Q Consensus       311 yd~~~~~W~~v~~  323 (387)
                      ||.++.+.+.+..
T Consensus       437 ~d~~tg~~~~l~~  449 (741)
T 1yr2_A          437 LDPATAKTTPWEP  449 (741)
T ss_dssp             EETTTTEEEECSC
T ss_pred             EECCCCcEEEEec
Confidence            9999887766643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=84.08  E-value=24  Score=31.97  Aligned_cols=147  Identities=14%  Similarity=0.041  Sum_probs=77.0

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCe-EEcCCCCCCcccccceeEEEECCEEEEEe------------ee
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRW-EKTGELKDGRFSREAIDAVGWKGKLCLVN------------VK  261 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W-~~~~~~~~~~~~~~~~~~v~~~g~lyv~g------------g~  261 (387)
                      ++.+++-|+.+.        .+.++|+.+++    - ..+..-...... ..+.+..-+|++.+.+            ..
T Consensus       192 ~~~~LaSgS~D~--------TIkIWDl~TGk----~l~tL~g~~~~v~~-v~~vafSpdG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          192 MQEALLGTTIMN--------NIVIWNLKTGQ----LLKKMHIDDSYQAS-VCHKAYSEMGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             STTEEEEEETTS--------EEEEEETTTCC----EEEEEECCC---CC-CEEEEEEETTEEEEEEC------------C
T ss_pred             CCceEEEecCCC--------cEEEEECCCCc----EEEEEcCCCcceee-eEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence            446666666544        88999999987    3 232210000000 0011233467765432            22


Q ss_pred             CCeEEEEECCCCceeecc-ccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccC-ce--eEEEe
Q 044903          262 GAEGAVYDVVANTWDDMR-EGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKG-AR--HAAAG  336 (387)
Q Consensus       262 ~~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~-~~--~~~~~  336 (387)
                      ...+..+|+.+..-..+- ..++.+.....+. -.++.+.+-+..++.|.+||..+.+-..  .+..... ..  .+..-
T Consensus       259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~--tL~gH~~~vvs~vafSP  336 (356)
T 2w18_A          259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTA--LLPPVSDQHWSFVKWSG  336 (356)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEE--EECCC--CCCCEEEECS
T ss_pred             CcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEE--EecCCCCCeEEEEEECC
Confidence            266777888766432211 0012222111111 1113345555678899999999886443  2222211 12  23455


Q ss_pred             CCeEEEEecCCceEEEEEec
Q 044903          337 GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       337 ~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +|+.++.|+.+..|.+||..
T Consensus       337 DG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          337 TDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             SSSEEEEECTTSCEEEEEEC
T ss_pred             CCCEEEEEECCCcEEEecCC
Confidence            88888888888999999863

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=83.99  E-value=6.5  Score=33.24  Aligned_cols=65  Identities=11%  Similarity=-0.060  Sum_probs=39.0

Q ss_pred             eeEEEE---CCEEEEEeeeCCeEEEEECCCCceeecc----ccccC------CCCCcEEEE--eCCeEEEEeCCCCeEEE
Q 044903          246 IDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMR----EGMVR------GWRGPVAAM--DEEVLYGIDENSCTLSK  310 (387)
Q Consensus       246 ~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~----~~~~~------~~~~~~~~~--~~g~ly~~g~~~~~v~~  310 (387)
                      ..+|..   ++++|++-|  ...+.||...++-..-+    .+++.      ...-.++..  .++++|++-+  ...++
T Consensus       118 IDAA~~~~~~gk~yfFkG--~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG--~~ywr  193 (225)
T 3oyo_A          118 IDSAFRSTKGKEVYLFKG--NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG--QNYVR  193 (225)
T ss_dssp             CCEEEECSSTTEEEEEET--TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET--TEEEE
T ss_pred             cceEEEECCCCcEEEEeC--CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC--CEEEE
Confidence            445543   689999965  46789997665443211    11111      111223333  3689999964  57999


Q ss_pred             EeCC
Q 044903          311 YDEV  314 (387)
Q Consensus       311 yd~~  314 (387)
                      ||..
T Consensus       194 ~d~~  197 (225)
T 3oyo_A          194 IDFT  197 (225)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9997

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=83.98  E-value=26  Score=32.21  Aligned_cols=104  Identities=11%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             CCEEEEEeeeCCeEEEEECCCC------ceeecc-----ccc-cCCCCCcEEEEeCCeEEEEeCC---------CCeEEE
Q 044903          252 KGKLCLVNVKGAEGAVYDVVAN------TWDDMR-----EGM-VRGWRGPVAAMDEEVLYGIDEN---------SCTLSK  310 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~------~W~~~~-----~~~-~~~~~~~~~~~~~g~ly~~g~~---------~~~v~~  310 (387)
                      +|+++++.. +..++++|..++      .|....     .+. +.++...++--.++++|+.-..         .+.|++
T Consensus       237 dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          237 AGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            666655433 246777777544      454211     122 2222222222246789996421         246999


Q ss_pred             EeCCCCceEEccccccccCcee-EEEeCCe--EEEEecCCceEEEEEecCC
Q 044903          311 YDEVMDDWKEVVKSDLLKGARH-AAAGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       311 yd~~~~~W~~v~~~~~~~~~~~-~~~~~~~--l~v~gg~~~~i~v~d~~~~  358 (387)
                      +|+++.+-..--..+  ..... .+.-+++  +|+..+.++.+.|||..+.
T Consensus       316 iD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          316 LDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             EETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            999887654432222  22222 3344554  6777777899999999865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=83.57  E-value=26  Score=31.86  Aligned_cols=192  Identities=10%  Similarity=-0.068  Sum_probs=87.8

Q ss_pred             eCCEEEEEcCccCC--CCCCCCccEEEeCCCCceee---CC-CC-----CCCceeeeEEeeCCEEEEEecCCCCCCCCCC
Q 044903          145 LSGKLILLAATTHN--FNPALTRPLIFDPICRTWTF---GP-EL-----VTPRRWCAAGYSRGAVYVASGIGSQFSSDVA  213 (387)
Q Consensus       145 ~~~~l~v~GG~~~~--~~~~~~~~~vydp~t~~W~~---l~-~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  213 (387)
                      -+..+|+..-....  .....+.+.+||+.|.+-..   ++ +.     ..|+ ..+...-+..+||..-.       ..
T Consensus        76 Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~~l~v~n~~-------~~  147 (373)
T 2mad_H           76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQFA-------AG  147 (373)
T ss_pred             CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCCEEEEEecC-------CC
Confidence            34567776421110  01123567899998765432   22 00     1122 22223345678887422       12


Q ss_pred             ceEEEEeCCCCccccCeEEcCC-CCCCcccccceeEEE-ECCEEEEEeeeCCeEEEEECCCCcee-ecc--ccccCC--C
Q 044903          214 KSVEKWDLMNGEKNSRWEKTGE-LKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWD-DMR--EGMVRG--W  286 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~~-~~~~~~~~~~~~~v~-~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~--~~~~~~--~  286 (387)
                      +.+.++| .+++    =.  .. ++.+.     +.... .+.+.|+.......+..+|. +.+-. ...  ......  .
T Consensus       148 ~~v~viD-~t~~----~~--~~~i~~~~-----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~  214 (373)
T 2mad_H          148 PAVGLVV-QGGS----SD--DQLLSSPT-----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNL  214 (373)
T ss_pred             CeEEEEE-CCCC----EE--eEEcCCCc-----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcce
Confidence            4789999 8776    32  22 22221     11111 23344443222345666666 43211 111  001000  0


Q ss_pred             -CCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccc-----------cccCc--eeEEEeCCeEEEEecC------
Q 044903          287 -RGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD-----------LLKGA--RHAAAGGGRVCAVCEN------  346 (387)
Q Consensus       287 -~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~-----------~~~~~--~~~~~~~~~l~v~gg~------  346 (387)
                       ..+.....++++|+.. ..+.+++.|..+..-+.+...+           ...+.  .++..-++++||...+      
T Consensus       215 ~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~  293 (373)
T 2mad_H          215 LTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL  293 (373)
T ss_pred             eecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence             0112223355666665 4567888888654322221110           01111  2233345789997542      


Q ss_pred             ---CceEEEEEecCC
Q 044903          347 ---GGGIVVVDVKAA  358 (387)
Q Consensus       347 ---~~~i~v~d~~~~  358 (387)
                         ++.++++|..+.
T Consensus       294 ~~~~~~V~VID~~t~  308 (373)
T 2mad_H          294 HAAAKEVTSVTGLVG  308 (373)
T ss_pred             cCCCCeEEEEECCCC
Confidence               357999999854

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=83.20  E-value=26  Score=31.52  Aligned_cols=64  Identities=6%  Similarity=-0.069  Sum_probs=40.3

Q ss_pred             eCCeEEEEeCCC-CeEEEEeCCCCc---eEEcccc-ccccCceeEEEe-CCeEEEEecCCceEEEEEecC
Q 044903          294 DEEVLYGIDENS-CTLSKYDEVMDD---WKEVVKS-DLLKGARHAAAG-GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       294 ~~g~ly~~g~~~-~~v~~yd~~~~~---W~~v~~~-~~~~~~~~~~~~-~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .+|.+|+.+... +.|+++|++...   |-.-.+. +...+..+++.. +|+++|+...++.++.+|+..
T Consensus       146 ~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          146 RDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            357899988767 889999998763   4221111 112223456655 565555545588899999873

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=82.36  E-value=27  Score=31.21  Aligned_cols=137  Identities=11%  Similarity=0.062  Sum_probs=65.7

Q ss_pred             ceEEEEeCC-CCccccCeEEcCCC--CC-CcccccceeEEEECC-EEEEEeeeCCeEEEEEC--CCCcee----eccccc
Q 044903          214 KSVEKWDLM-NGEKNSRWEKTGEL--KD-GRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDV--VANTWD----DMREGM  282 (387)
Q Consensus       214 ~~v~vyd~~-t~~~~~~W~~~~~~--~~-~~~~~~~~~~v~~~g-~lyv~gg~~~~i~~yD~--~~~~W~----~~~~~~  282 (387)
                      ..+.+||.. +++    ...+..+  +. ....  .+.+..-+| .+|+.+.....+.+|+.  ++++..    .+.. +
T Consensus       167 ~~v~~~~~~~~g~----~~~~~~~~~~~~g~~p--~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-~  239 (365)
T 1jof_A          167 NKLWTHRKLASGE----VELVGSVDAPDPGDHP--RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL-I  239 (365)
T ss_dssp             TEEEEEEECTTSC----EEEEEEEECSSTTCCE--EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES-S
T ss_pred             CEEEEEEECCCCC----EEEeeeEecCCCCCCC--CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc-C
Confidence            378889987 666    5443222  11 1100  011222255 57776544466777654  355442    2221 2


Q ss_pred             cCCC---C-------Cc-EEE-E-eCC-eEEEEeCCCC-----eEEEEeCC-CCceEEccc-cc-cc--cCceeEEE---
Q 044903          283 VRGW---R-------GP-VAA-M-DEE-VLYGIDENSC-----TLSKYDEV-MDDWKEVVK-SD-LL--KGARHAAA---  335 (387)
Q Consensus       283 ~~~~---~-------~~-~~~-~-~~g-~ly~~g~~~~-----~v~~yd~~-~~~W~~v~~-~~-~~--~~~~~~~~---  335 (387)
                      +.+.   .       .+ .++ + .+| .||+.....+     .|.+|+.+ +.+.+.+.. .+ ..  -...++..   
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~  319 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence            2111   1       12 222 2 244 5776543222     79999875 455554321 11 11  11233333   


Q ss_pred             eCCeEEEEecCCceEEEEEecC
Q 044903          336 GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       336 ~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      -+..|++.+..++.+.+|+.+.
T Consensus       320 dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          320 SDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCEEEEEEcCCCeEEEEEEch
Confidence            2455666655568899998874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=82.26  E-value=42  Score=33.31  Aligned_cols=200  Identities=10%  Similarity=0.065  Sum_probs=97.9

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CC-EEEEEecCCCC-------CCCCCCce
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RG-AVYVASGIGSQ-------FSSDVAKS  215 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~-------~~~~~~~~  215 (387)
                      -+|+.++++....  ......++++|..+++......... . ....+-. ++ .||........       ........
T Consensus       134 PDg~~la~~~~~~--G~~~~~i~v~d~~tg~~~~~~~~~~-~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  209 (710)
T 2xdw_A          134 EDGEYFAYGLSAS--GSDWVTIKFMKVDGAKELPDVLERV-K-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (710)
T ss_dssp             TTSSEEEEEEEET--TCSCEEEEEEETTTTEEEEEEEEEE-C-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             CCCCEEEEEEcCC--CCceEEEEEEECCCCCCCcccccCc-c-cceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence            4666555543222  1122378999999998776321110 1 1112222 34 45444322110       00122346


Q ss_pred             EEEEeCCCCccccCeE--EcCCCCC-CcccccceeEEEECCEEEEEeee-----CCeEEEEECCC------C--ceeecc
Q 044903          216 VEKWDLMNGEKNSRWE--KTGELKD-GRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVA------N--TWDDMR  279 (387)
Q Consensus       216 v~vyd~~t~~~~~~W~--~~~~~~~-~~~~~~~~~~v~~~g~lyv~gg~-----~~~i~~yD~~~------~--~W~~~~  279 (387)
                      +.+++..+++    -.  .+...+. +..  .......-+|+..++...     ...++++|..+      .  .++.+.
T Consensus       210 v~~~~l~t~~----~~~~~v~~~~~~~~~--~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~  283 (710)
T 2xdw_A          210 LYYHVLGTDQ----SEDILCAEFPDEPKW--MGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (710)
T ss_dssp             EEEEETTSCG----GGCEEEECCTTCTTC--EEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             EEEEECCCCc----ccceEEeccCCCCeE--EEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence            7888888776    32  2211111 110  001122335654333332     35788888876      4  577665


Q ss_pred             ccccCCCCCcEEEEeCCeEEEEeCC---CCeEEEEeCCCC---ceEEccccccccCceeEEEe-CCeEEEEecCC--ceE
Q 044903          280 EGMVRGWRGPVAAMDEEVLYGIDEN---SCTLSKYDEVMD---DWKEVVKSDLLKGARHAAAG-GGRVCAVCENG--GGI  350 (387)
Q Consensus       280 ~~~~~~~~~~~~~~~~g~ly~~g~~---~~~v~~yd~~~~---~W~~v~~~~~~~~~~~~~~~-~~~l~v~gg~~--~~i  350 (387)
                      .....  ........|+.||+....   ...|+++|.++.   .|+.+...........+... ++++++....+  ..+
T Consensus       284 ~~~~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l  361 (710)
T 2xdw_A          284 DNFEG--EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL  361 (710)
T ss_dssp             CSSSS--CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred             CCCCc--EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence            32211  112233456788888753   346999998775   58876543211111123334 67777765443  357


Q ss_pred             EEEEec
Q 044903          351 VVVDVK  356 (387)
Q Consensus       351 ~v~d~~  356 (387)
                      +++|..
T Consensus       362 ~~~~~~  367 (710)
T 2xdw_A          362 QLHDLA  367 (710)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            888874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=82.11  E-value=4.8  Score=37.17  Aligned_cols=102  Identities=10%  Similarity=-0.032  Sum_probs=59.4

Q ss_pred             CCEEEEEeee----CCeEEEEECCCCcee-eccccccCCCCCcEEEEe--CCeEEEEeC---------CCCeEEEEeCCC
Q 044903          252 KGKLCLVNVK----GAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMD--EEVLYGIDE---------NSCTLSKYDEVM  315 (387)
Q Consensus       252 ~g~lyv~gg~----~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~--~g~ly~~g~---------~~~~v~~yd~~~  315 (387)
                      +.++|+....    ...+.++|+.+.+=. +++.    +... .+++.  +..+|+...         .++.|.+||+++
T Consensus        44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v----G~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG----GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE----CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC----CCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            5678888654    368899999876532 2322    2222 23332  446888752         235699999998


Q ss_pred             CceEEcccccc------ccCceeE-EE-eCCeEEEEecC-CceEEEEEecCC
Q 044903          316 DDWKEVVKSDL------LKGARHA-AA-GGGRVCAVCEN-GGGIVVVDVKAA  358 (387)
Q Consensus       316 ~~W~~v~~~~~------~~~~~~~-~~-~~~~l~v~gg~-~~~i~v~d~~~~  358 (387)
                      .+-..-...+.      ...+..+ +. -+.++||.+.. ++.+.|+|..+.
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence            86443222221      1122222 23 34567877653 678999999865

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=81.67  E-value=31  Score=31.38  Aligned_cols=184  Identities=12%  Similarity=0.062  Sum_probs=93.1

Q ss_pred             cEEEeCCC--CceeeCCCCCCCceeeeEEee---CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCC---C
Q 044903          166 PLIFDPIC--RTWTFGPELVTPRRWCAAGYS---RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL---K  237 (387)
Q Consensus       166 ~~vydp~t--~~W~~l~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~---~  237 (387)
                      +++++...  .+|+.+.+........+.+..   .+.||+.+..+.     .-..+...+-...+    |+.+...   +
T Consensus        33 l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~-----~g~gl~~s~D~G~t----W~~~~~~~~~~  103 (394)
T 3b7f_A           33 AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGH-----LGPTVFRSDDGGGN----WTEATRPPAFN  103 (394)
T ss_dssp             EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-------CCEEEEEESSTTSC----CEECSBCCCCC
T ss_pred             eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCC-----CCccEEEeCCCCCC----ceECCccccCC
Confidence            56676654  689876321222222333333   467888764321     01134555555556    9988632   1


Q ss_pred             CCcc-----cccceeEEEE-----CCEEEEEeeeCCeEEEEECCCCceeeccccc--cC--------------CCCCcEE
Q 044903          238 DGRF-----SREAIDAVGW-----KGKLCLVNVKGAEGAVYDVVANTWDDMREGM--VR--------------GWRGPVA  291 (387)
Q Consensus       238 ~~~~-----~~~~~~~v~~-----~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~~--------------~~~~~~~  291 (387)
                      ....     ......++.+     .+.+|+.+. ...++..+-...+|+.+....  +.              ...-..+
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i  182 (394)
T 3b7f_A          104 KAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSI  182 (394)
T ss_dssp             CCC----CCCCCEEEEEEECCTTSTTCEEEEEE-TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEE
T ss_pred             CcccccccccccceeEEEeCCCCCCCEEEEEec-CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEE
Confidence            1100     0001222333     577887643 335677766677999875311  10              0011233


Q ss_pred             EEe---CCeEEEEeCCCCeEEEEeCCCCceEEcccccc------c-----cCceeEEEeC---CeEEEEecCCceEEEEE
Q 044903          292 AMD---EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL------L-----KGARHAAAGG---GRVCAVCENGGGIVVVD  354 (387)
Q Consensus       292 ~~~---~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~------~-----~~~~~~~~~~---~~l~v~gg~~~~i~v~d  354 (387)
                      ++.   .+.||+... .+.+++.+-..++|+.+.....      .     ...+.++...   +.||+-.  ...++..+
T Consensus       183 ~~d~~~~~~l~vg~~-~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~  259 (394)
T 3b7f_A          183 LVDPRDPKHLYIGMS-SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMD  259 (394)
T ss_dssp             EECTTCTTCEEEEEE-TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEE
T ss_pred             EECCCCCCEEEEEEC-CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeC
Confidence            333   356887643 4568888888899998853211      0     1123333332   5566643  34466665


Q ss_pred             ecCCCCCceeEE
Q 044903          355 VKAAAAPTIFVV  366 (387)
Q Consensus       355 ~~~~~~~~~W~~  366 (387)
                      ...    ..|+.
T Consensus       260 D~G----~tW~~  267 (394)
T 3b7f_A          260 RRE----GVWKR  267 (394)
T ss_dssp             TTT----TEEEC
T ss_pred             CCC----CcceE
Confidence            543    48986

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=81.35  E-value=61  Score=34.59  Aligned_cols=137  Identities=10%  Similarity=0.034  Sum_probs=79.4

Q ss_pred             CCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEE
Q 044903          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       212 ~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                      ....+.+|+....+    .+.+...+..-.   ..+.+.++|+|.+  +.+..+.+||...++--......-.......+
T Consensus       862 ~~Gri~vf~v~~~k----L~lv~~~~v~g~---v~al~~~~g~Lla--~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l  932 (1158)
T 3ei3_A          862 KQGRIVVFQYSDGK----LQTVAEKEVKGA---VYSMVEFNGKLLA--SINSTVRLYEWTTEKELRTECNHYNNIMALYL  932 (1158)
T ss_dssp             CCEEEEEEEEETTE----EEEEEEEEESSC---EEEEEEETTEEEE--EETTEEEEEEECTTSCEEEEEEECCCSCEEEE
T ss_pred             CceEEEEEEEECCE----EEEEEEEEcCCc---CEEEeeeCCEEEE--EcCCEEEEEECCCCceEEEEeeccccEEEEEE
Confidence            34578888877555    666553332111   1556678996543  45578999998766422211100000001133


Q ss_pred             EEeCCeEEEEeCCCC-eEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          292 AMDEEVLYGIDENSC-TLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       292 ~~~~g~ly~~g~~~~-~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ...++.|++-+...+ .+..|+++.++-..+......+...++..+++.-++.+...++++++....
T Consensus       933 ~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          933 KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred             eccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence            355777766654333 478899999988888866665555555555544455555667888886654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=80.93  E-value=28  Score=30.46  Aligned_cols=168  Identities=10%  Similarity=-0.033  Sum_probs=78.2

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEee-CC-EEEEEecCCC------------------CCCCCCCceEEEEeCCC
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RG-AVYVASGIGS------------------QFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~-~iyv~GG~~~------------------~~~~~~~~~v~vyd~~t  223 (387)
                      ..++++|..+++.+.+...+.   ....... ++ .|++......                  .+.......+.++|..+
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             ceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            458899998887776654332   1112221 44 4544432100                  00001135688899988


Q ss_pred             CccccCe-EEcCCCCCCcccccceeEEEECCEEEEEeeeC---------CeEEEEECCCCceeeccccccCCCCCcEEEE
Q 044903          224 GEKNSRW-EKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---------AEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       224 ~~~~~~W-~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~---------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                      ++    . ..+.. + . .   ......-+| +++.+...         ..++.+|  +++++.+...   .. .....-
T Consensus       162 ~~----~~~~l~~-~-~-~---~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~-~~~~sp  224 (347)
T 2gop_A          162 EE----VIEEFEK-P-R-F---SSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK---VS-FYAVDS  224 (347)
T ss_dssp             TE----EEEEEEE-E-T-T---CEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE---ES-EEEEEE
T ss_pred             Ce----EEeeecC-C-C-c---ccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC---cc-eeeECC
Confidence            87    6 54443 2 1 1   122222355 55444321         2566777  6666665432   11 112222


Q ss_pred             eCCeEEEEeCC-------CCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEE-EE
Q 044903          294 DEEVLYGIDEN-------SCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVV-VD  354 (387)
Q Consensus       294 ~~g~ly~~g~~-------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v-~d  354 (387)
                      .|..|++.+..       ...|++||  +.+++.+...........++..++ +++.+..+..+.+ ++
T Consensus       225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~~~  290 (347)
T 2gop_A          225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLYIW  290 (347)
T ss_dssp             CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEEEc
Confidence            33446655532       24699999  555665543211111111222255 7766554444444 44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	6e-05

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 35/264 (13%), Positives = 63/264 (23%), Gaps = 38/264 (14%)

Query: 107 PVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAA----TTHNFNPA 162
           P    W P    P   P                  +   SG++++ ++            
Sbjct: 6   PGLGRWGPTIDLPI-VPAA--------------AAIEPTSGRVLMWSSYRNDAFGGSPGG 50

Query: 163 LTRPLIFDPICRTWTFGPELVTPR-RWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDL 221
           +T    +DP     +     VT    +C      G     +G       + AK    +D 
Sbjct: 51  ITLTSSWDPSTGIVSDRTVTVTKHDMFCP-----GISMDGNGQIVVTGGNDAKKTSLYDS 105

Query: 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREG 281
            +       +          +  +   V   G      V    G VY   + TW  +   
Sbjct: 106 SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNA 165

Query: 282 -------------MVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLK 328
                                +    +  ++    ++     Y     D K   K    +
Sbjct: 166 KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 225

Query: 329 GARHAAAGGGRVCAVCENGGGIVV 352
           G    A  G  V      G  +  
Sbjct: 226 GVAPDAMCGNAVMYDAVKGKILTF 249

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.87
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.06
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.99
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.68
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.48
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.47
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.43
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.41
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.35
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.35
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.23
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.12
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.1
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.09
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.01
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.98
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.91
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.86
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.85
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.83
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.71
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.7
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.62
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.6
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.59
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.34
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.2
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.14
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.0
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.75
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	95.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.55
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.51
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	95.44
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.39
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.36
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	95.21
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.77
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	94.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.31
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.16
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	93.7
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	93.2
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.37
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.11
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.04
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	91.85
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	91.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.61
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.32
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	90.98
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	90.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	90.37
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	90.21
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.19
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.99
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	89.49
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.99
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	88.09
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	87.73
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	87.2
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	87.0
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	85.96
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.87
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	84.71
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	83.55
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	83.31
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	81.63
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	81.49
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	80.52

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-31  Score=241.82  Aligned_cols=255  Identities=16%  Similarity=0.230  Sum_probs=213.1

Q ss_pred             eEEEeecCCCCCCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCC--CCC
Q 044903           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHN--FNP  161 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~--~~~  161 (387)
                      .+|++++.   .......+++||+.+++|..++++|..               |.+|++++++++||++||....  ...
T Consensus         6 ~iyv~GG~---~~~~~~~~~~yd~~t~~W~~~~~~p~~---------------R~~~~~~~~~~~iyv~GG~~~~~~~~~   67 (288)
T d1zgka1           6 LIYTAGGY---FRQSLSYLEAYNPSNGTWLRLADLQVP---------------RSGLAGCVVGGLLYAVGGRNNSPDGNT   67 (288)
T ss_dssp             CEEEECCB---SSSBCCCEEEEETTTTEEEECCCCSSC---------------CBSCEEEEETTEEEEECCEEEETTEEE
T ss_pred             EEEEECCc---CCCCCceEEEEECCCCeEEECCCCCCc---------------cceeEEEEECCEEEEEeCcccCCCCcc
Confidence            47888874   222334588999999999999988762               5678999999999999996431  123


Q ss_pred             CCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       162 ~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+++++||+.+++|+++++||.+|..++++..++++|++||...   ......++.||+.++.    |...+.++..+.
T Consensus        68 ~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~r~  140 (288)
T d1zgka1          68 DSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDE----WHLVAPMLTRRI  140 (288)
T ss_dssp             ECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTE----EEECCCCSSCCB
T ss_pred             ccchhhhcccccccccccccccceecceeccccceeeEEecceec---ccccceeeeeccccCc----cccccccccccc
Confidence            467899999999999999999999999999999999999999855   3456789999999999    999998886654


Q ss_pred             cccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCC-----CeEEEE
Q 044903          242 SREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSKY  311 (387)
Q Consensus       242 ~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~-----~~v~~y  311 (387)
                         .+.++.+++++|++||..     ..++.||+.+++|...+. .+.....+++++.++++|++|+..     ..++.|
T Consensus       141 ---~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~  216 (288)
T d1zgka1         141 ---GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY  216 (288)
T ss_dssp             ---SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEE
T ss_pred             ---cceeeeeeecceEecCcccccccceEEEeeccccccccccc-cccccccccccceeeeEEEecCccccccccceeee
Confidence               488899999999999876     778999999999998876 444555678888899999998743     368999


Q ss_pred             eCCCCceEEccccccccCceeEEEeCCeEEEEecCC-----ceEEEEEecCCCCCceeEE--cCCCC
Q 044903          312 DEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV--DTPLG  371 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~-----~~i~v~d~~~~~~~~~W~~--~~~~~  371 (387)
                      |..+++|+.+.++|..+..++++.++|+|||+||.+     ..+++||+.++    .|+.  .+|.+
T Consensus       217 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~  279 (288)
T d1zgka1         217 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD----TWSEVTRMTSG  279 (288)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT----EEEEEEECSSC
T ss_pred             eecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC----EEEECCCCCCC
Confidence            999999999998888888889999999999998853     46899999987    8997  56655

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.4e-25  Score=196.45  Aligned_cols=243  Identities=15%  Similarity=0.213  Sum_probs=193.1

Q ss_pred             HHhhHhhhhhccCCCCCCc-------ceEEEeecCCCC--CCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCcc
Q 044903           64 HNVCHSWRRLIYSPSFPPF-------LSLYALFSPKSN--SSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFL  134 (387)
Q Consensus        64 r~Vck~W~~li~s~~f~~~-------~~l~~~~~~~~~--~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~  134 (387)
                      ....++|..+.+-|.-+..       -.+|++++....  .......+++||+.+++|..++++|..             
T Consensus        25 d~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~-------------   91 (288)
T d1zgka1          25 NPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP-------------   91 (288)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC-------------
T ss_pred             ECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccce-------------
Confidence            3455677777444321111       257777752100  011234589999999999999988862             


Q ss_pred             ccccceeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCc
Q 044903          135 SRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAK  214 (387)
Q Consensus       135 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  214 (387)
                        |..++++..++++|++||...  ....+.+++||+.+++|...+.++.+|..++++..++++|++||...   .....
T Consensus        92 --r~~~~~~~~~~~i~~~gg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~---~~~~~  164 (288)
T d1zgka1          92 --RNRIGVGVIDGHIYAVGGSHG--CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG---TNRLN  164 (288)
T ss_dssp             --CBTCEEEEETTEEEEECCEET--TEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS---SCBCC
T ss_pred             --ecceeccccceeeEEecceec--ccccceeeeeccccCccccccccccccccceeeeeeecceEecCccc---ccccc
Confidence              556889999999999999765  34567789999999999999999999999999999999999999865   34567


Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCCceeeccccccCCCCCc
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGP  289 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~  289 (387)
                      .++.||+.+++    |...+.++..+.   .+.++.+++++|++||..     ...+.||+.+++|+.+++ ++..+..+
T Consensus       165 ~~~~~d~~~~~----~~~~~~~~~~~~---~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~  236 (288)
T d1zgka1         165 SAECYYPERNE----WRMITAMNTIRS---GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSAL  236 (288)
T ss_dssp             CEEEEETTTTE----EEECCCCSSCCB---SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSC
T ss_pred             eEEEeeccccc----cccccccccccc---cccccceeeeEEEecCccccccccceeeeeecceeeecccC-ccCcccce
Confidence            89999999999    999988776653   478899999999999876     788999999999999986 55566678


Q ss_pred             EEEEeCCeEEEEeCCC-----CeEEEEeCCCCceEEccccccccCceeEE
Q 044903          290 VAAMDEEVLYGIDENS-----CTLSKYDEVMDDWKEVVKSDLLKGARHAA  334 (387)
Q Consensus       290 ~~~~~~g~ly~~g~~~-----~~v~~yd~~~~~W~~v~~~~~~~~~~~~~  334 (387)
                      ++++.+++||++||.+     ..+++||+++++|+++..+|..|..++++
T Consensus       237 ~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~  286 (288)
T d1zgka1         237 GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA  286 (288)
T ss_dssp             EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred             EEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEeEEEE
Confidence            8889999999999743     35999999999999999988888766554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.91  E-value=3.5e-23  Score=193.92  Aligned_cols=262  Identities=13%  Similarity=0.118  Sum_probs=177.0

Q ss_pred             hhhhhccCCCCCCc-------ceEEEeecCCCC----CCCCCeEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccc
Q 044903           69 SWRRLIYSPSFPPF-------LSLYALFSPKSN----SSSTPIHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRN  137 (387)
Q Consensus        69 ~W~~li~s~~f~~~-------~~l~~~~~~~~~----~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~  137 (387)
                      +|...+..|.-...       -.++++++-...    .........+|||.+++|..+++++... .            +
T Consensus        10 ~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-~------------~   76 (387)
T d1k3ia3          10 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-D------------M   76 (387)
T ss_dssp             EEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-C------------C
T ss_pred             ccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc-c------------c
Confidence            57777766644321       147777653211    1112224778999999999887765421 1            1


Q ss_pred             ccee-EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-CCEEEEEecCCCCCCCCCCce
Q 044903          138 LPVQ-LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RGAVYVASGIGSQFSSDVAKS  215 (387)
Q Consensus       138 ~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~  215 (387)
                      +.+. ++..++++|++||...      +.+.+|||.+++|+++++|+.+|.+++++.+ ++++|++||...  .....++
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~------~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~--~~~~~~~  148 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS--GGVFEKN  148 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSST------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCC--SSSCCCC
T ss_pred             ceeEEEEecCCcEEEeecCCC------cceeEecCccCcccccccccccccccceeeecCCceeeeccccc--cccccce
Confidence            1123 3335788999988532      5789999999999999999999988877776 679999999865  3456789


Q ss_pred             EEEEeCCCCccccCeEEcCCCCCCccccc---------------------------------------------------
Q 044903          216 VEKWDLMNGEKNSRWEKTGELKDGRFSRE---------------------------------------------------  244 (387)
Q Consensus       216 v~vyd~~t~~~~~~W~~~~~~~~~~~~~~---------------------------------------------------  244 (387)
                      +++||+.+++    |..++.++.......                                                   
T Consensus       149 v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T d1k3ia3         149 GEVYSPSSKT----WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN  224 (387)
T ss_dssp             EEEEETTTTE----EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET
T ss_pred             eeeecCCCCc----eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccC
Confidence            9999999999    999876543211000                                                   


Q ss_pred             --------ceeEEE---ECCEEEEEeeeC--------CeEEEEE-----CCCCceeeccccccCCCCCcEEEEe-CCeEE
Q 044903          245 --------AIDAVG---WKGKLCLVNVKG--------AEGAVYD-----VVANTWDDMREGMVRGWRGPVAAMD-EEVLY  299 (387)
Q Consensus       245 --------~~~~v~---~~g~lyv~gg~~--------~~i~~yD-----~~~~~W~~~~~~~~~~~~~~~~~~~-~g~ly  299 (387)
                              ...++.   .++++|++||..        .....++     ...+.|..+.. ++..+..+++++. +|+||
T Consensus       225 ~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~~~~~~~dg~i~  303 (387)
T d1k3ia3         225 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG-LYFARTFHTSVVLPDGSTF  303 (387)
T ss_dssp             TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC-CSSCCBSCEEEECTTSCEE
T ss_pred             cccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccc-cccccccceeeeccCCeEE
Confidence                    001111   267888888754        1222332     33456776665 5555555666655 78999


Q ss_pred             EEeCCC-----------CeEEEEeCCCCceEEccccccccCceeEEEe--CCeEEEEecCC--------ceEEEEEec
Q 044903          300 GIDENS-----------CTLSKYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENG--------GGIVVVDVK  356 (387)
Q Consensus       300 ~~g~~~-----------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~~~l~v~gg~~--------~~i~v~d~~  356 (387)
                      ++||..           ..+.+||+++++|+++.+++..|..|.++.+  +|+|||+||+.        ..+.+||+-
T Consensus       304 v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Pp  381 (387)
T d1k3ia3         304 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN  381 (387)
T ss_dssp             EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred             EECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEcch
Confidence            999732           1478999999999999988887766655554  89999999841        357888764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.87  E-value=1.1e-21  Score=183.48  Aligned_cols=144  Identities=17%  Similarity=0.263  Sum_probs=108.7

Q ss_pred             CCCCCcccCCCCCCCCCccccccCCCccccccceeEEEeCCEEEEEcCccCCC----CCCCCccEEEeCCCCceeeCCCC
Q 044903          107 PVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF----NPALTRPLIFDPICRTWTFGPEL  182 (387)
Q Consensus       107 ~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~----~~~~~~~~vydp~t~~W~~l~~~  182 (387)
                      |..++|...+++|..               +...+++..+++||++||.....    ......+++|||.|++|++++++
T Consensus         6 p~~g~W~~~~~~p~~---------------~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~   70 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIV---------------PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT   70 (387)
T ss_dssp             TTSCEEEEEEECSSC---------------CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE
T ss_pred             CCCCccCCcCCCCcc---------------ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC
Confidence            567789888777752               11234444689999999975421    12233478999999999999888


Q ss_pred             CCCceeee---EEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE-CCEEEEE
Q 044903          183 VTPRRWCA---AGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLV  258 (387)
Q Consensus       183 ~~~r~~~~---~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~-~g~lyv~  258 (387)
                      +.+|..++   +...+++||+.||.+.       +++++||+.+++    |...++|+.++..   |.++++ ||++|++
T Consensus        71 ~~~~~~~~~~~~~~~~g~i~v~Gg~~~-------~~~~~yd~~~~~----w~~~~~~~~~r~~---~~~~~~~dG~v~v~  136 (387)
T d1k3ia3          71 VTKHDMFCPGISMDGNGQIVVTGGNDA-------KKTSLYDSSSDS----WIPGPDMQVARGY---QSSATMSDGRVFTI  136 (387)
T ss_dssp             ECSCCCSSCEEEECTTSCEEEECSSST-------TCEEEEEGGGTE----EEECCCCSSCCSS---CEEEECTTSCEEEE
T ss_pred             CCCcccceeEEEEecCCcEEEeecCCC-------cceeEecCccCc----ccccccccccccc---cceeeecCCceeee
Confidence            87775432   2334789999998653       468999999999    9999999977643   666665 7899999


Q ss_pred             eeeC------CeEEEEECCCCceeecc
Q 044903          259 NVKG------AEGAVYDVVANTWDDMR  279 (387)
Q Consensus       259 gg~~------~~i~~yD~~~~~W~~~~  279 (387)
                      ||..      .++++||+.+++|+.++
T Consensus       137 GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         137 GGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             CCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             ccccccccccceeeeecCCCCceeecC
Confidence            9864      68999999999999775

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.8e-10  Score=69.43  Aligned_cols=37  Identities=27%  Similarity=0.422  Sum_probs=33.6

Q ss_pred             CCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCC
Q 044903           43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF   79 (387)
Q Consensus        43 ~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f   79 (387)
                      |..||+||+.+||++||   +.++++|||+|+++++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            45799999999999999   88899999999999998865

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=7.4e-07  Score=65.22  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=36.9

Q ss_pred             CCCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCC
Q 044903           41 PLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPP   81 (387)
Q Consensus        41 ~~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~   81 (387)
                      ..+..||+||+..||++||   +.++.+|||+|+.++.++.+++
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~   60 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR   60 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4678899999999999999   8899999999999999987753

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=1e-06  Score=64.21  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=33.1

Q ss_pred             CCCCChHHHHHHHhhhcC---hhhHHHhhHhhhhhccC-CCC
Q 044903           42 LLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYS-PSF   79 (387)
Q Consensus        42 ~~~~LP~dl~~~iL~rLP---~~~~r~Vck~W~~li~s-~~f   79 (387)
                      .+..||+||+++||+.|+   +.+++.|||+|+.++++ +.+
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            456799999999999999   88999999999999865 444

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=5.2e-06  Score=62.29  Aligned_cols=41  Identities=29%  Similarity=0.428  Sum_probs=35.4

Q ss_pred             CCCCCh----HHHHHHHhhhcC---hhhHHHhhHhhhhhccCCCCCCc
Q 044903           42 LLPGLP----DHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPF   82 (387)
Q Consensus        42 ~~~~LP----~dl~~~iL~rLP---~~~~r~Vck~W~~li~s~~f~~~   82 (387)
                      ++..||    |||+..||++|+   +.++.+|||+|+.+++++.+++.
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~   57 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK   57 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            455666    699999999999   88999999999999999988653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.0084  Score=51.12  Aligned_cols=149  Identities=14%  Similarity=0.154  Sum_probs=82.3

Q ss_pred             EeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECC
Q 044903          192 GYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       192 ~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ...++..++.|+.+.        .+.+||..+.+    -.........     ...++..++.+.+.++....+.+||..
T Consensus       183 ~~~~~~~l~s~~~dg--------~i~~~d~~~~~----~~~~~~~~~~-----~v~~~~~~~~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDT--------SIRVWDVETGN----CIHTLTGHQS-----LTSGMELKDNILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             EEECSSEEEEEETTS--------CEEEEETTTCC----EEEEECCCCS-----CEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             ccCCCCEEEEEeCCC--------eEEEeecccce----eeeEeccccc-----ceeEEecCCCEEEEEcCCCEEEEEecc
Confidence            344666666666543        67888888776    3222211111     133445566666666766889999987


Q ss_pred             CCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE-cccc--ccccCc-eeEEE-eCCeEEEEecC
Q 044903          272 ANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE-VVKS--DLLKGA-RHAAA-GGGRVCAVCEN  346 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~-v~~~--~~~~~~-~~~~~-~~~~l~v~gg~  346 (387)
                      ..+-...-...............++.+++.++.++.|.+||.++.+-.. +...  +..... .++.. .++.+++.|+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~  325 (342)
T d2ovrb2         246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR  325 (342)
T ss_dssp             TCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred             cccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            7643322211111111223334456777788889999999998875433 2211  112222 22333 34556666554


Q ss_pred             C----ceEEEEEecC
Q 044903          347 G----GGIVVVDVKA  357 (387)
Q Consensus       347 ~----~~i~v~d~~~  357 (387)
                      +    ..++++|...
T Consensus       326 dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         326 NGTEETKLLVLDFDV  340 (342)
T ss_dssp             SSSSCCEEEEEECCC
T ss_pred             CCCCeeEEEEEeCCC
Confidence            3    3589999873

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.47  E-value=0.02  Score=49.24  Aligned_cols=187  Identities=10%  Similarity=-0.017  Sum_probs=94.0

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--CC-EEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--RG-AVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      ++..++.+|...     ...+.++|..+.+-...  +.........+.+  ++ .+++.|+.+.        .+.+||..
T Consensus       113 d~~~l~~~~~~~-----~~~~~v~~~~~~~~~~~--l~~h~~~v~~v~~~~~~~~~l~sgs~d~--------~i~i~d~~  177 (311)
T d1nr0a1         113 ESKRIAAVGEGR-----ERFGHVFLFDTGTSNGN--LTGQARAMNSVDFKPSRPFRIISGSDDN--------TVAIFEGP  177 (311)
T ss_dssp             TSCEEEEEECCS-----SCSEEEEETTTCCBCBC--CCCCSSCEEEEEECSSSSCEEEEEETTS--------CEEEEETT
T ss_pred             cccccccccccc-----ccccccccccccccccc--ccccccccccccccccceeeeccccccc--------cccccccc
Confidence            455555555221     23356777776543221  1111111112222  23 3566666533        57889988


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceee-cccc--ccCCCCC--cEEEE-e
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDD-MREG--MVRGWRG--PVAAM-D  294 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~~--~~~~~~~--~~~~~-~  294 (387)
                      +.+    -...-.-..     ....++.+  ++.+++.++....+.+||..+++-.. +...  ...+..+  .+++. .
T Consensus       178 ~~~----~~~~~~~~~-----~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~  248 (311)
T d1nr0a1         178 PFK----FKSTFGEHT-----KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  248 (311)
T ss_dssp             TBE----EEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             ccc----ccccccccc-----ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            765    222211111     11223333  56666677766789999987664321 1110  1111111  12222 2


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEE-ccccccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKE-VVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +++..+.++.++.|.+||..+.+-.. +............+...+..++.++.++.|.+||++
T Consensus       249 ~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            45666677778999999998775332 211111112222334444455565678899999874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.43  E-value=0.0044  Score=54.91  Aligned_cols=190  Identities=13%  Similarity=0.141  Sum_probs=103.7

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCce-eeeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      -++.+++.|+.+       ..+.+||..++++..+..+..... -.+.+. -+++.++.||.+.        .+.+||..
T Consensus        17 ~dg~~la~~~~~-------~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~--------~i~vWd~~   81 (371)
T d1k8kc_          17 KDRTQIAICPNN-------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR--------NAYVWTLK   81 (371)
T ss_dssp             TTSSEEEEECSS-------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS--------CEEEEEEE
T ss_pred             CCCCEEEEEeCC-------CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCC--------eEEEEeec
Confidence            466677777632       368899999888877654432111 112222 2456666666533        68899999


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEEC--CCCceeeccccccCCCCCc--EEEE-eC
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDV--VANTWDDMREGMVRGWRGP--VAAM-DE  295 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~--~~~~W~~~~~~~~~~~~~~--~~~~-~~  295 (387)
                      +++    |...........   ....+.+  +++..+.|+....+.+++.  ..+.+.....  ..+....  +++. .+
T Consensus        82 ~~~----~~~~~~~~~~~~---~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          82 GRT----WKPTLVILRINR---AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI--KKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             TTE----EEEEEECCCCSS---CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE--CTTCCSCEEEEEECTT
T ss_pred             ccc----cccccccccccc---cccccccccccccceeecccCcceeeeeeccccccccccc--cccccccccccccccc
Confidence            888    886654432211   1223333  5665566555555555544  3444443221  1111111  2222 25


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceEEcccc----------------ccccCc-eeE-EEeCCeEEEEecCCceEEEEEecC
Q 044903          296 EVLYGIDENSCTLSKYDEVMDDWKEVVKS----------------DLLKGA-RHA-AAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~W~~v~~~----------------~~~~~~-~~~-~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      +++++.++.++.+.+||............                ...... .++ ...+|+.++.++.++.+.+||...
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            67777787889999999876543322110                001111 222 234667777777788899999875


Q ss_pred             C
Q 044903          358 A  358 (387)
Q Consensus       358 ~  358 (387)
                      .
T Consensus       233 ~  233 (371)
T d1k8kc_         233 K  233 (371)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.41  E-value=0.0035  Score=54.80  Aligned_cols=191  Identities=12%  Similarity=0.039  Sum_probs=106.7

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC-CCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFG-PELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++.||+..-       ....++++||.+++.... .+.. ......+..-++++||+...+.    .....+..+|..+.
T Consensus        50 ~G~Ly~~D~-------~~g~I~ri~p~g~~~~~~~~~~~-~~p~gla~~~dG~l~va~~~~~----~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          50 QGQLFLLDV-------FEGNIFKINPETKEIKRPFVSHK-ANPAAIKIHKDGRLFVCYLGDF----KSTGGIFAATENGD  117 (319)
T ss_dssp             TSCEEEEET-------TTCEEEEECTTTCCEEEEEECSS-SSEEEEEECTTSCEEEEECTTS----SSCCEEEEECTTSC
T ss_pred             CCCEEEEEC-------CCCEEEEEECCCCeEEEEEeCCC-CCeeEEEECCCCCEEEEecCCC----ccceeEEEEcCCCc
Confidence            567888743       235789999998865543 2211 1222222233679999853321    12346777888777


Q ss_pred             ccccCeEEcC-CCCCCcccccceeEEEECCEEEEEeeeC------CeEEEEECCCCceeeccccccCCCCCcEEEE--eC
Q 044903          225 EKNSRWEKTG-ELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DE  295 (387)
Q Consensus       225 ~~~~~W~~~~-~~~~~~~~~~~~~~v~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~  295 (387)
                      .    ..... ...... . -.-.++.-+|.+|+-....      ..++.++++....+.+...+...   ..+++  .+
T Consensus       118 ~----~~~~~~~~~~~~-~-~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~dg  188 (319)
T d2dg1a1         118 N----LQDIIEDLSTAY-C-IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTDE  188 (319)
T ss_dssp             S----CEEEECSSSSCC-C-EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTTS
T ss_pred             e----eeeeccCCCccc-C-CcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee---eeeeecccc
Confidence            6    44433 222111 1 1112333478898864322      45777888877776654322211   12333  24


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCc---eEEccc----cccccCceeEE-EeCCeEEEEecCCceEEEEEecC
Q 044903          296 EVLYGIDENSCTLSKYDEVMDD---WKEVVK----SDLLKGARHAA-AGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~---W~~v~~----~~~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      +.||+.....+.|++||.+.+.   ......    ......+-.++ --+|.|||....++.|.++|++.
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            5699998777899999876441   111111    11111223333 35789999977788999999873

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.021  Score=48.70  Aligned_cols=171  Identities=11%  Similarity=0.059  Sum_probs=88.6

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..+..||..+.+..................-.+..++.|+.+.        .+.+||..+..    -...-.-..     
T Consensus       181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------~i~i~d~~~~~----~~~~~~~h~-----  243 (355)
T d1nexb2         181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT--------TIRIWDLENGE----LMYTLQGHT-----  243 (355)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEEEETTTCC----EEEEECCCS-----
T ss_pred             ceeeeeecccccceeeeeccccccccccccccceeeecccccc--------eEEeeeccccc----ccccccccc-----
Confidence            3567788877654433222222222222233455555555433        57889988776    322211111     


Q ss_pred             cceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccc
Q 044903          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVK  323 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~  323 (387)
                      ....++.+++++.+.|+.+..+.+||..+..-.....  ............++++.+.+ .++.|.+||.++.+..... 
T Consensus       244 ~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~-  319 (355)
T d1nexb2         244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN-  319 (355)
T ss_dssp             SCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEE--CTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSC-
T ss_pred             ccccccccccceeeeeecccccccccccccceecccc--cCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEE-
Confidence            1133556677777777777889999987654322111  11111222334466665554 5789999999887532211 


Q ss_pred             cccccCc-eeEEEeCCeEEEEecCCce--EEEEEe
Q 044903          324 SDLLKGA-RHAAAGGGRVCAVCENGGG--IVVVDV  355 (387)
Q Consensus       324 ~~~~~~~-~~~~~~~~~l~v~gg~~~~--i~v~d~  355 (387)
                      ....... .+++..++.+++.++.++.  ++++|.
T Consensus       320 ~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         320 ILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             TTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEEC
T ss_pred             ecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEeC
Confidence            1112222 2344445555555555554  566664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=0.017  Score=48.39  Aligned_cols=189  Identities=13%  Similarity=0.030  Sum_probs=101.7

Q ss_pred             eeEEE-eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeC--CCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceE
Q 044903          140 VQLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG--PELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       140 ~~~~~-~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v  216 (387)
                      +.++. .+|.+|+......      ..+..+++.+..=...  .....|.  ..+..-+++|||+.....        .+
T Consensus        17 ~~vavd~dG~i~v~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~p~--gvav~~~g~i~v~d~~~~--------~i   80 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMY------GRVVKLATGSTGTTVLPFNGLYQPQ--GLAVDGAGTVYVTDFNNR--------VV   80 (260)
T ss_dssp             EEEEECTTCCEEEEECSSS------CEEEEEC----CEEECCCCSCCSCC--CEEECTTCCEEEEETTTE--------EE
T ss_pred             CEEEEcCCCCEEEEEcCCC------CEEEEEcCCCceEEEeccCCccCce--EEEEcCCCCEEEeeeeec--------ee
Confidence            44444 4678998865322      3566676665543332  2222222  122334678998854322        34


Q ss_pred             EEEeCCCCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCc-eeeccccccCCCCCcEEEE
Q 044903          217 EKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       217 ~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~  293 (387)
                      .+++..+..    +....  ..  .  .....++  -+|.+|+.......+..+++.... |......+...   ..+++
T Consensus        81 ~~~~~~~~~----~~~~~--~~--~--~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~i~~  147 (260)
T d1rwia_          81 TLAAGSNNQ----TVLPF--DG--L--NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP---DGVAV  147 (260)
T ss_dssp             EECTTCSCC----EECCC--CS--C--CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC---CEEEE
T ss_pred             eeeeeccce----eeeee--ee--e--eecccccccccceeEeeccccccccccccccceeeeeeecccCCc---ceeee
Confidence            444444444    33221  11  0  0112233  467899876555778888886654 33222222211   23333


Q ss_pred             -eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCCeEEEEecCCceEEEEEecCC
Q 044903          294 -DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 -~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                       .++++|+.....+.+.+||.+......+... ....+.+++. .+|+|||....++.++.+++...
T Consensus       148 ~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         148 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cCCCCEeeeccccccccccccccceeeeeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence             3668999887778899999987755444322 2233444444 46799998777788888887743

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.036  Score=45.65  Aligned_cols=189  Identities=14%  Similarity=0.088  Sum_probs=90.2

Q ss_pred             eeEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      ..++..++..++.|+.+       ..+.+||..+.+-...  +........+...++++++.|+.+.        .+.++
T Consensus        18 V~c~~~d~~~l~sgs~D-------g~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~~~l~s~s~D~--------~i~~~   80 (293)
T d1p22a2          18 VYCLQYDDQKIVSGLRD-------NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS--------TVRVW   80 (293)
T ss_dssp             EEEEECCSSEEEEEESS-------SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS--------CEEEE
T ss_pred             EEEEEEcCCEEEEEeCC-------CeEEEEECCCCcEEEE--EecCCCCEeeeecccceeecccccc--------ccccc
Confidence            34556678877777743       3578889887664431  1111112223445777777777644        67888


Q ss_pred             eCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCC-cEEEEeCCeE
Q 044903          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAMDEEVL  298 (387)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~~~g~l  298 (387)
                      +..++.    ...........     ...........+.+.....+.++|..+..-............. ........ .
T Consensus        81 ~~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~  150 (293)
T d1p22a2          81 DVNTGE----MLNTLIHHCEA-----VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-Y  150 (293)
T ss_dssp             ESSSCC----EEEEECCCCSC-----EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-E
T ss_pred             cccccc----ccccccccccc-----cccccccccceeecccccceeEeeccccccccccccccccccccccceeccc-c
Confidence            888777    44433222111     2222223333333344456777777654321111101111111 11222233 3


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          299 YGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       299 y~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .+.++.++.+..||..+.+-..  ...........+..++..++.++.++.+.+||..+
T Consensus       151 ~~~~s~d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             cccccCCCceeeecCCCCcEEE--EEcccccccccccCCCCeEEEecCCCEEEEEeccc
Confidence            3344456778888887654322  11111122223333444555555556666666653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.24  E-value=0.0067  Score=51.64  Aligned_cols=194  Identities=11%  Similarity=0.048  Sum_probs=105.5

Q ss_pred             eeEEE-eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC----CCceeeeEEee--CCEEEEEecCCCCCCCCC
Q 044903          140 VQLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV----TPRRWCAAGYS--RGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       140 ~~~~~-~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~  212 (387)
                      ..+++ .++.|||....       .+.+.+||+..+-=+..+...    ........+..  .+..++.....       
T Consensus        26 ~gvavd~dg~i~VaD~~-------n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------   91 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTN-------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------   91 (279)
T ss_dssp             EEEEECTTCCEEEEEGG-------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------
T ss_pred             cEEEEcCCCCEEEEECC-------CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCC-------
Confidence            44554 56789998543       257889998744222222111    11111222222  23344332211       


Q ss_pred             CceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEE-
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA-  291 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~-  291 (387)
                      ...+..++.....    +.....-....   ....++.-+|.+|+.......+.+||+....-..+....  ....+.. 
T Consensus        92 ~~~i~~~~~~g~~----~~~~~~~~~~~---p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~--~~~~~~~i  162 (279)
T d1q7fa_          92 THQIQIYNQYGQF----VRKFGATILQH---PRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSK--HLEFPNGV  162 (279)
T ss_dssp             GCEEEEECTTSCE----EEEECTTTCSC---EEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTT--TCSSEEEE
T ss_pred             ccccccccccccc----eeecCCCcccc---cceeccccCCcEEEEeeccceeeEeccCCceeecccccc--ccccccee
Confidence            1256777776665    55553211111   012223346789988766678899998765433332211  1112222 


Q ss_pred             E-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE-EeCCeEEEEecC-CceEEEEEec
Q 044903          292 A-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGGRVCAVCEN-GGGIVVVDVK  356 (387)
Q Consensus       292 ~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~~l~v~gg~-~~~i~v~d~~  356 (387)
                      + -.++.+|+.+...+.|++||++.+....+........+.+++ ..+|+|||.-.. +..+.++|.+
T Consensus       163 ~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         163 VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             eeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence            2 235689999887889999999988776765443344444443 357789988543 3457777765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.23  E-value=0.018  Score=48.23  Aligned_cols=143  Identities=15%  Similarity=0.065  Sum_probs=85.8

Q ss_pred             eCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC--CCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECC
Q 044903          194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       194 ~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~--~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      .+++||+.....        ..+..++.....    -....  .+..+.     ..++.-+|.+|+.......+..||++
T Consensus       107 ~~g~i~v~d~~~--------~~~~~~~~~~~~----~~~~~~~~~~~p~-----~i~~~~~g~~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_         107 TQGAVYVADRGN--------NRVVKLAAGSKT----QTVLPFTGLNDPD-----GVAVDNSGNVYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             TTCCEEEEEGGG--------TEEEEECTTCSS----CEECCCCSCCSCC-----EEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             ccceeEeecccc--------ccccccccccce----eeeeeecccCCcc-----eeeecCCCCEeeeccccccccccccc
Confidence            356888874322        256677776655    22222  222111     11222367888876655789999998


Q ss_pred             CCceeeccc-cccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEe-CCeEEEEecCCc
Q 044903          272 ANTWDDMRE-GMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCENGG  348 (387)
Q Consensus       272 ~~~W~~~~~-~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~~~l~v~gg~~~  348 (387)
                      ......... .+..   ...+++ .+|.||+.+...+.+.+|++++...+.+.... ...+..++.. +|.|||.-.+++
T Consensus       170 ~~~~~~~~~~~~~~---p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~-~~~P~~i~~d~~g~l~vad~~~~  245 (260)
T d1rwia_         170 SNNQVVLPFTDITA---PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-LNTPLAVAVDSDRTVYVADRGND  245 (260)
T ss_dssp             TCCEEECCCSSCCS---EEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS-CCCEEEEEECTTCCEEEEEGGGT
T ss_pred             cceeeeeeccccCC---CccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC-CCCeEEEEEeCCCCEEEEECCCC
Confidence            775554432 1111   123333 35789999877788999999887666654322 2234445443 578999866677


Q ss_pred             eEEEEEecC
Q 044903          349 GIVVVDVKA  357 (387)
Q Consensus       349 ~i~v~d~~~  357 (387)
                      .|..++..+
T Consensus       246 rI~~i~~~~  254 (260)
T d1rwia_         246 RVVKLTSLE  254 (260)
T ss_dssp             EEEEECCCG
T ss_pred             EEEEEeCCC
Confidence            888887663

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.20  E-value=0.015  Score=50.52  Aligned_cols=228  Identities=9%  Similarity=-0.002  Sum_probs=112.1

Q ss_pred             eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEEe--CCEEEEEcCccCCCCCCCCccEEEeCCCCcee
Q 044903          100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWT  177 (387)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~  177 (387)
                      ..++.+|+.++.+..+......  .          .......++..  ++.+|+..+.        ..+.++|+.+....
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~--~----------~~g~P~Gl~~~~dg~~l~vad~~--------~~i~~~~~~g~~~~  105 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVN--G----------YGGIPAGCQCDRDANQLFVADMR--------LGLLVVQTDGTFEE  105 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEET--T----------EECCEEEEEECSSSSEEEEEETT--------TEEEEEETTSCEEE
T ss_pred             CEEEEEECCCCcEEEEECCccc--c----------CCCcceeEEEeCCCCEEEEEECC--------CeEEEEeCCCcEEE
Confidence            3588899988876544321110  0          00112334432  3467776542        35788999877655


Q ss_pred             eCCCCCCCce----eeeEEeeCCEEEEEecCCCC--C-----CCCCCceEEEEeCCCCccccCeEEcC-CCCCCcccccc
Q 044903          178 FGPELVTPRR----WCAAGYSRGAVYVASGIGSQ--F-----SSDVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREA  245 (387)
Q Consensus       178 ~l~~~~~~r~----~~~~~~~~~~iyv~GG~~~~--~-----~~~~~~~v~vyd~~t~~~~~~W~~~~-~~~~~~~~~~~  245 (387)
                      .+......+.    ...+..-+|.+|+.......  .     .......++.+++...     ...+. .+..+    . 
T Consensus       106 ~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-----~~~~~~~~~~p----N-  175 (314)
T d1pjxa_         106 IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-----MIQVDTAFQFP----N-  175 (314)
T ss_dssp             CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-----EEEEEEEESSE----E-
T ss_pred             EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-----eeEeeCCccee----e-
Confidence            4433222221    11233335789987422110  0     0112235677776543     44432 12211    0 


Q ss_pred             eeEEEECC-----EEEEEeeeCCeEEEEECCCC---ceeeccccccCC-CCCc-EEEE-eCCeEEEEeCCCCeEEEEeCC
Q 044903          246 IDAVGWKG-----KLCLVNVKGAEGAVYDVVAN---TWDDMREGMVRG-WRGP-VAAM-DEEVLYGIDENSCTLSKYDEV  314 (387)
Q Consensus       246 ~~~v~~~g-----~lyv~gg~~~~i~~yD~~~~---~W~~~~~~~~~~-~~~~-~~~~-~~g~ly~~g~~~~~v~~yd~~  314 (387)
                      -.+..-++     .||+.......++.||...+   .+.++-..+... ...+ .+++ .+|+||+.....+.|.+||++
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            11222222     58877555578899986543   222211101110 0111 2333 467899987667899999998


Q ss_pred             CCceEEccccccccCceeEEEeCC-eEEEEecCCceEEEEEecC
Q 044903          315 MDDWKEVVKSDLLKGARHAAAGGG-RVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       315 ~~~W~~v~~~~~~~~~~~~~~~~~-~l~v~gg~~~~i~v~d~~~  357 (387)
                      +..-......|.......++.-++ .|||....++.|+.+|...
T Consensus       256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            765433222222221222222233 4888866677788777763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.12  E-value=0.016  Score=49.78  Aligned_cols=178  Identities=11%  Similarity=0.000  Sum_probs=92.7

Q ss_pred             EeCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCC----CceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEE
Q 044903          144 SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT----PRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       144 ~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      ..++.+++...         +.+..||+.+++++.+.....    .|.....+.-+|++|+.-....    .....-..|
T Consensus        67 ~~dg~l~va~~---------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~----~~~~~g~l~  133 (295)
T d2ghsa1          67 ISDSKQLIASD---------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK----AETGAGSIY  133 (295)
T ss_dssp             EETTEEEEEET---------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT----CCTTCEEEE
T ss_pred             ecCCCEEEEEe---------CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccc----ccccceeEe
Confidence            35777777532         358999999999988754432    2233333444678887644322    112233445


Q ss_pred             eCCCCccccCeEEcC-CCCCCcccccceeEEEE-CCEEEEEeeeCCeEEEEECCCC--ceee-----ccccccCCCCCcE
Q 044903          220 DLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVAN--TWDD-----MREGMVRGWRGPV  290 (387)
Q Consensus       220 d~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~-~g~lyv~gg~~~~i~~yD~~~~--~W~~-----~~~~~~~~~~~~~  290 (387)
                      ....++    -..+. .+..+     +..+..- +..+|+.......++.|+...+  ....     +...-..+. -..
T Consensus       134 ~~~~g~----~~~~~~~~~~~-----Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~-pdG  203 (295)
T d2ghsa1         134 HVAKGK----VTKLFADISIP-----NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG-MDG  203 (295)
T ss_dssp             EEETTE----EEEEEEEESSE-----EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE-EEE
T ss_pred             eecCCc----EEEEeeccCCc-----ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccccc-ccc
Confidence            555555    44433 11111     1111222 3457877655578888876432  2211     110001111 112


Q ss_pred             EEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-e-CCeEEEEec
Q 044903          291 AAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-G-GGRVCAVCE  345 (387)
Q Consensus       291 ~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~-~~~l~v~gg  345 (387)
                      +++ .+|.||+..-..+.|.+||++.+...++..+ ......+++. - .+.|||...
T Consensus       204 ~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP-~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         204 SVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP-GKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS-CSBEEEEEEESTTSCEEEEEEB
T ss_pred             eEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCC-CCceEEEEEeCCCCCEEEEEEC
Confidence            333 4578998865678899999998877776543 2221122221 1 245888754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.019  Score=49.66  Aligned_cols=169  Identities=12%  Similarity=0.097  Sum_probs=89.5

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..+.++|..+++-..............+...++..++.|+.+.        .+.+||..+.+    =...-.....    
T Consensus       163 ~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~--------~v~i~d~~~~~----~~~~~~~~~~----  226 (337)
T d1gxra_         163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN--------TVRSWDLREGR----QLQQHDFTSQ----  226 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTTE----EEEEEECSSC----
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc--------cccccccccce----eecccccccc----
Confidence            3567888877654332111111111111223455666665533        67888888765    2111111111    


Q ss_pred             cceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEE
Q 044903          244 EAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKE  320 (387)
Q Consensus       244 ~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~  320 (387)
                        ..++.+  ++.+.+.++....+.+||..+..-.....  ... .-.+++ ..+++.++.++.++.|.+||..+.+  .
T Consensus       227 --i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--~  299 (337)
T d1gxra_         227 --IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--S  299 (337)
T ss_dssp             --EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC--CSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--E
T ss_pred             --eEEEEEcccccccceeccccccccccccccccccccc--ccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCC--E
Confidence              122222  45566666666789999987665432211  111 011222 2356667777778999999987653  3


Q ss_pred             ccccccccCceeE-EEeCCeEEEEecCCceEEEEEe
Q 044903          321 VVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       321 v~~~~~~~~~~~~-~~~~~~l~v~gg~~~~i~v~d~  355 (387)
                      +........-..+ ...+++.++.|+.++.|.+||+
T Consensus       300 ~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         300 IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            3222222221222 3346788888888888999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.09  E-value=0.017  Score=49.72  Aligned_cols=145  Identities=13%  Similarity=0.092  Sum_probs=78.1

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeC--CeEEEEEC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKG--AEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~--~~i~~yD~  270 (387)
                      ++++.+.|+.+.        .+.+||..+..    ......+....   ....++.  -++++++.++.+  ..+.++|.
T Consensus        69 ~g~~latg~~dg--------~i~iwd~~~~~----~~~~~~~~~~~---~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~  133 (311)
T d1nr0a1          69 SGYYCASGDVHG--------NVRIWDTTQTT----HILKTTIPVFS---GPVKDISWDSESKRIAAVGEGRERFGHVFLF  133 (311)
T ss_dssp             TSSEEEEEETTS--------EEEEEESSSTT----CCEEEEEECSS---SCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred             CCCeEeccccCc--------eEeeeeeeccc----ccccccccccc---Ccccccccccccccccccccccccccccccc
Confidence            566777777644        68899988876    43221111100   0122222  256666666544  44678887


Q ss_pred             CCCceeeccccccCCCCCcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE--eCCeEEEEecC
Q 044903          271 VANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCEN  346 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~~~~~~~~-~g-~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~~~l~v~gg~  346 (387)
                      ++.+-...-.....  .-.+++.. ++ .+++.++.++.|.+||.++.+-..  ...........+.  .++++++.|+.
T Consensus       134 ~~~~~~~~l~~h~~--~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~--~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         134 DTGTSNGNLTGQAR--AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             TTCCBCBCCCCCSS--CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccc--ccccccccccceeeeccccccccccccccccccccc--ccccccccccccccCccccccccccc
Confidence            76543221110000  01123222 23 356667778899999998654322  2222222322232  36788888778


Q ss_pred             CceEEEEEecCC
Q 044903          347 GGGIVVVDVKAA  358 (387)
Q Consensus       347 ~~~i~v~d~~~~  358 (387)
                      ++.+.+||....
T Consensus       210 d~~v~~~d~~~~  221 (311)
T d1nr0a1         210 DGTIVLYNGVDG  221 (311)
T ss_dssp             TSCEEEEETTTC
T ss_pred             cccccccccccc
Confidence            888999998754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.01  E-value=0.065  Score=45.72  Aligned_cols=189  Identities=14%  Similarity=0.045  Sum_probs=105.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.||.+.-       ....++.+|+.+++-+.. .++. .....+..-++.++|+..          +.+..||+.+++
T Consensus        29 ~~~l~wvDi-------~~~~I~r~d~~~g~~~~~-~~~~-~~~~i~~~~dg~l~va~~----------~gl~~~d~~tg~   89 (295)
T d2ghsa1          29 SGTAWWFNI-------LERELHELHLASGRKTVH-ALPF-MGSALAKISDSKQLIASD----------DGLFLRDTATGV   89 (295)
T ss_dssp             TTEEEEEEG-------GGTEEEEEETTTTEEEEE-ECSS-CEEEEEEEETTEEEEEET----------TEEEEEETTTCC
T ss_pred             CCEEEEEEC-------CCCEEEEEECCCCeEEEE-ECCC-CcEEEEEecCCCEEEEEe----------CccEEeecccce
Confidence            677887643       125789999999865542 1222 122233345678887632          247899999999


Q ss_pred             cccCeEEcCCCCCCccc-ccceeEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEE
Q 044903          226 KNSRWEKTGELKDGRFS-REAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~-~~~~~~v~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~  300 (387)
                          .+.+......... +-.-..+--+|.+|+-....    .....|....++-..+...+... .+.+....++.+|+
T Consensus        90 ----~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~-Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          90 ----LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIP-NSICFSPDGTTGYF  164 (295)
T ss_dssp             ----EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSE-EEEEECTTSCEEEE
T ss_pred             ----eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCc-ceeeecCCCceEEE
Confidence                8887654433211 11122233367888764322    34455555556555544322211 11222223456899


Q ss_pred             EeCCCCeEEEEeCCCC--ce----EEcccccc-ccCceeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903          301 IDENSCTLSKYDEVMD--DW----KEVVKSDL-LKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~--~W----~~v~~~~~-~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+...+.|++|+.+.+  ..    ......+. .....+++ --+|.|+|..-+++.|.+||++..
T Consensus       165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~  230 (295)
T d2ghsa1         165 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN  230 (295)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             eecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCc
Confidence            9877889999976432  11    11111111 11223333 457889998767889999998843

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.98  E-value=0.021  Score=47.81  Aligned_cols=144  Identities=18%  Similarity=0.076  Sum_probs=76.4

Q ss_pred             EEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee--CCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS--RGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      .+||.+..       .+.+.++|+.|++..+.-+..  ..-+..+..  +.++||.++.+.        .+.+||..+.+
T Consensus         3 ~~yV~~~~-------~~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~--------~i~v~d~~t~~   65 (301)
T d1l0qa2           3 FAYIANSE-------SDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSN--------DVSIIDTATNN   65 (301)
T ss_dssp             EEEEEETT-------TTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGT--------EEEEEETTTTE
T ss_pred             EEEEEECC-------CCEEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEECCCC--------EEEEEECCCCc
Confidence            35666542       246889999999866522221  111222322  346888776543        78999998876


Q ss_pred             cccCeEEcCCCCCCcccccceeEEE-ECCE-EEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE--eCCeEEEE
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVG-WKGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGI  301 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~-~~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~g~ly~~  301 (387)
                          -...  ++....   .+..+. -++. +++.+.....+.++|..+++-...-.... .  ....+.  .+..+++.
T Consensus        66 ----~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          66 ----VIAT--VPAGSS---PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-S--PLGLALSPDGKKLYVT  133 (301)
T ss_dssp             ----EEEE--EECSSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-S--EEEEEECTTSSEEEEE
T ss_pred             ----eeee--eecccc---ccccccccccccccccccccceeeecccccceeeeeccccc-c--ceEEEeecCCCeeeee
Confidence                2221  111111   122222 2443 55544444778888888775443221111 1  112222  23456666


Q ss_pred             eCCCCeEEEEeCCCCceEE
Q 044903          302 DENSCTLSKYDEVMDDWKE  320 (387)
Q Consensus       302 g~~~~~v~~yd~~~~~W~~  320 (387)
                      +..+..+.+++..+.....
T Consensus       134 ~~~~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2         134 NNGDKTVSVINTVTKAVIN  152 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEE
T ss_pred             eccccceeeeeccccceee
Confidence            6666788999988775544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.91  E-value=0.044  Score=45.71  Aligned_cols=214  Identities=16%  Similarity=0.095  Sum_probs=103.8

Q ss_pred             eEEEEEeCCCCCcccCCCCCCCCCccccccCCCccccccceeEEE-eCC-EEEEEcCccCCCCCCCCccEEEeCCCCcee
Q 044903          100 IHLFTFDPVSSTWDPLPPPPPDPPLHLILHHPSFLSRNLPVQLVS-LSG-KLILLAATTHNFNPALTRPLIFDPICRTWT  177 (387)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~vydp~t~~W~  177 (387)
                      ..+.++|+.+.+...--+....                 .+.++. -+| .||+.+..+       ..+.+||..+++-.
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~-----------------p~~va~spdG~~l~v~~~~~-------~~i~v~d~~t~~~~   67 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSN-----------------PMGAVISPDGTKVYVANAHS-------NDVSIIDTATNNVI   67 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSS-----------------EEEEEECTTSSEEEEEEGGG-------TEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCC-----------------ceEEEEeCCCCEEEEEECCC-------CEEEEEECCCCcee
Confidence            3578899988764432122211                 133333 244 467665432       46899999987654


Q ss_pred             eCCCCCCCceeeeEEe-eCC-EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-
Q 044903          178 FGPELVTPRRWCAAGY-SRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-  254 (387)
Q Consensus       178 ~l~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-  254 (387)
                      ..-+..  ......+. .++ .+++.+..+        ..+.++|..+.+    -...-......    ......-+|. 
T Consensus        68 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~dg~~  129 (301)
T d1l0qa2          68 ATVPAG--SSPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNT----VAGTVKTGKSP----LGLALSPDGKK  129 (301)
T ss_dssp             EEEECS--SSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE----EEEEEECSSSE----EEEEECTTSSE
T ss_pred             eeeecc--cccccccccccccccccccccc--------ceeeecccccce----eeeeccccccc----eEEEeecCCCe
Confidence            321111  11122222 233 455554332        256778887776    33322211111    0112222454 


Q ss_pred             EEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCcee
Q 044903          255 LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARH  332 (387)
Q Consensus       255 lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~  332 (387)
                      +++.+.....+..+|..+......-.... .  ...++.  .++.+|+.......+.+++....................
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
T d1l0qa2         130 LYVTNNGDKTVSVINTVTKAVINTVSVGR-S--PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIA  206 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECCS-S--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEE
T ss_pred             eeeeeccccceeeeeccccceeeecccCC-C--ceEEEeeccccceeeecccccccccccccceeeeecccccCCcceee
Confidence            44444344677888887775443322111 1  112222  234577776666778888887776555432221111122


Q ss_pred             EEEeCCeEEEEecC--CceEEEEEecCC
Q 044903          333 AAAGGGRVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       333 ~~~~~~~l~v~gg~--~~~i~v~d~~~~  358 (387)
                      +...+..+|+.+.+  ...+.++|..+.
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ccccccccccccccceeeeeeeeecCCC
Confidence            22234455555433  356888888754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.86  E-value=0.1  Score=43.88  Aligned_cols=177  Identities=10%  Similarity=-0.019  Sum_probs=97.0

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~  243 (387)
                      ..+..+++....+..............+...++.+|++....        ..+.+||+....    -...........  
T Consensus        93 ~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~--------~~~~~~~~~g~~----~~~~g~~~~~~~--  158 (279)
T d1q7fa_          93 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV--------MRVIIFDQNGNV----LHKFGCSKHLEF--  158 (279)
T ss_dssp             CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT--------TEEEEECTTSCE----EEEEECTTTCSS--
T ss_pred             cccccccccccceeecCCCcccccceeccccCCcEEEEeecc--------ceeeEeccCCce----eecccccccccc--
Confidence            456777877666665432222222222333457888875432        256778876554    333321111101  


Q ss_pred             cceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCc-EEEE-eCCeEEEEeCC-CCeEEEEeCCCCceEE
Q 044903          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAM-DEEVLYGIDEN-SCTLSKYDEVMDDWKE  320 (387)
Q Consensus       244 ~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~-~~g~ly~~g~~-~~~v~~yd~~~~~W~~  320 (387)
                      ....++--+|.+|+.......+.+||+..+...++... . ....+ .+++ .+|.||+.+.. ...|.+|+++.+-=..
T Consensus       159 ~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~-g-~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~  236 (279)
T d1q7fa_         159 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE-G-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISA  236 (279)
T ss_dssp             EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT-T-TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEE
T ss_pred             cceeeeccceeEEeeeccccceeeeecCCceeeeeccc-c-cccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEE
Confidence            01122223578999877778999999987765555321 1 11122 2333 35789998753 3469999987552222


Q ss_pred             ccccccccCceeE-EEeCCeEEEEecCCceEEEEEecC
Q 044903          321 VVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       321 v~~~~~~~~~~~~-~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      +........+..+ +.-+|.|||.. .++.|.+|....
T Consensus       237 ~~~~~~~~~p~~vav~~dG~l~V~~-~n~~v~~fr~~~  273 (279)
T d1q7fa_         237 LESKVKHAQCFDVALMDDGSVVLAS-KDYRLYIYRYVQ  273 (279)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEEEE-TTTEEEEEECSC
T ss_pred             EeCCCCCCCEeEEEEeCCCcEEEEe-CCCeEEEEEeee
Confidence            3222222233444 44578888874 567898888774

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.86  E-value=0.0085  Score=50.74  Aligned_cols=146  Identities=9%  Similarity=0.029  Sum_probs=82.9

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++++.|+.+.        .+.+||..+.+    ...+.......    ...++.+  ++++.+.++....+.+||..+
T Consensus       147 ~~~~l~~g~~dg--------~i~~~d~~~~~----~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         147 DKQFVAVGGQDS--------KVHVYKLSGAS----VSEVKTIVHPA----EITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             TSCEEEEEETTS--------EEEEEEEETTE----EEEEEEEECSS----CEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccc--------ccccccccccc----ccccccccccc----cccccccccccccccccccccccccccccc
Confidence            455566665433        67889888776    54433221111    1222222  456666666667899999887


Q ss_pred             CceeeccccccCCCC-CcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCc-eeEEEeCCeEEEEecCCc
Q 044903          273 NTWDDMREGMVRGWR-GPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGA-RHAAAGGGRVCAVCENGG  348 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~-~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~-~~~~~~~~~l~v~gg~~~  348 (387)
                      +........+..... -.+++. .++.+++.++.++.|.+||.++.....+... ...... ..++..+++.++.|+.++
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~  290 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS  290 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCC
Confidence            655433221211111 112232 3567777777889999999987654433222 112222 234445667777777888


Q ss_pred             eEEEEEec
Q 044903          349 GIVVVDVK  356 (387)
Q Consensus       349 ~i~v~d~~  356 (387)
                      .|-+||+.
T Consensus       291 ~i~iWdl~  298 (299)
T d1nr0a2         291 NIKFWNVP  298 (299)
T ss_dssp             CEEEEECC
T ss_pred             EEEEEecc
Confidence            99999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.029  Score=49.07  Aligned_cols=148  Identities=9%  Similarity=0.019  Sum_probs=74.5

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCc--ccccceeEEEE--CCEEEEEeeeCCeEEEEEC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR--FSREAIDAVGW--KGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~--~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~  270 (387)
                      ++.+++.|+.+.        .+.+||..+..    ...........  ........+.+  ++.+.+.++.+..+.+||.
T Consensus       216 ~~~~l~~~~~d~--------~i~i~~~~~~~----~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~  283 (388)
T d1erja_         216 DGKYIAAGSLDR--------AVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  283 (388)
T ss_dssp             TCCEEEEEETTS--------CEEEEETTTCC----EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCeEEEEcCCC--------eEEEeecccCc----cceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEec
Confidence            456666666543        57888888776    33221111100  00111222222  4666666666678899998


Q ss_pred             CCCceeeccccccC----------CCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCce-eEEE---
Q 044903          271 VANTWDDMREGMVR----------GWRGPVAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR-HAAA---  335 (387)
Q Consensus       271 ~~~~W~~~~~~~~~----------~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~-~~~~---  335 (387)
                      .+..-.........          ...-.+++. .++++.+.++.++.|.+||.++.+-  +.....+.... .++.   
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~l~~H~~~V~~~~~~~~  361 (388)
T d1erja_         284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANG  361 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSS
T ss_pred             cCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--EEEEeCCCCCEEEEEEecC
Confidence            65533221100000          000111222 2456666777889999999987643  32333223222 2221   


Q ss_pred             ----eCCeEEEEecCCceEEEEEec
Q 044903          336 ----GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       336 ----~~~~l~v~gg~~~~i~v~d~~  356 (387)
                          .++.+++.|+.++.|.+||++
T Consensus       362 ~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         362 SSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cccCCCCCEEEEEeCCCEEEEEeee
Confidence                267888888888999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.079  Score=44.57  Aligned_cols=110  Identities=10%  Similarity=0.105  Sum_probs=69.6

Q ss_pred             eeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcc-cc
Q 044903          246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVV-KS  324 (387)
Q Consensus       246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~-~~  324 (387)
                      ......++...+.++.+..+.+||....+-....... .. ...++.. .+.+++.++.++.|.+||..+.+-.... ..
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~-~~-~v~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  256 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QS-LTSGMEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQGP  256 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCC-CS-CEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEeccc-cc-ceeEEec-CCCEEEEEcCCCEEEEEeccccccccccccc
Confidence            4455567777777777788999998776533222111 11 1122333 4456667777899999999776543322 22


Q ss_pred             ccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ........++..++.+++.|+.++.|.+||+.++
T Consensus       257 ~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             TSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred             ceeeeceeecccCCCeeEEEcCCCEEEEEECCCC
Confidence            2233344556677888888888899999999854

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.14  Score=43.64  Aligned_cols=102  Identities=9%  Similarity=0.061  Sum_probs=60.4

Q ss_pred             CEEEEEeeeCCeEEEEECCCCce-eeccccccCCCCCc--EEEEeCCeEEEEeCCCCeEEEEeCCCCceEEcccccc---
Q 044903          253 GKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGP--VAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL---  326 (387)
Q Consensus       253 g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~--~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~---  326 (387)
                      +.+++.++.+..+.+||..+++- ..+.. ........  +....+++.++.++.++.|.+||.++.+-........   
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~  296 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  296 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             ceeccccccccceeeeeeccccccccccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc
Confidence            56777777778899999987754 33331 11111111  2223467777777788999999998875332211111   


Q ss_pred             ccCceeEEEeCCeEEEEecCCceEEEEEe
Q 044903          327 LKGARHAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       327 ~~~~~~~~~~~~~l~v~gg~~~~i~v~d~  355 (387)
                      .....++...++..++.|+.++.+.+||+
T Consensus       297 ~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         297 GNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            11123344444555666677888999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.031  Score=48.24  Aligned_cols=182  Identities=12%  Similarity=0.044  Sum_probs=97.1

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCcee-eeEEe-eCCEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW-CAAGY-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      ++..++.|+.+       ..+.+||....+.+....+...... ...+. -++.+++.++.+.        .+.+||..+
T Consensus       108 dg~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------NIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCCEEEEeecc-------ccccccccccccccccccccccccccccccccccccccccccccc--------ccccccccc
Confidence            55666666532       3578889877665543333221111 11122 2455556555433        578888887


Q ss_pred             CccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEE-eCCeEE
Q 044903          224 GEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAM-DEEVLY  299 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~-~~g~ly  299 (387)
                      .+.   +........+      ...+.  .++...+.++....+.+||..+.+=. ...  ....  -.+++. .+++..
T Consensus       173 ~~~---~~~~~~~~~~------v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~--i~~l~~~~~~~~l  239 (337)
T d1gxra_         173 QTL---VRQFQGHTDG------ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQ--IFSLGYCPTGEWL  239 (337)
T ss_dssp             TEE---EEEECCCSSC------EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSC--EEEEEECTTSSEE
T ss_pred             ccc---cccccccccc------cccccccccccccccccccccccccccccceeecccc--cccc--eEEEEEccccccc
Confidence            761   2222211111      11222  35666667776678999998776421 111  1111  112222 245666


Q ss_pred             EEeCCCCeEEEEeCCCCceEEccccccccCce-e-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          300 GIDENSCTLSKYDEVMDDWKEVVKSDLLKGAR-H-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~-~-~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.++.++.+.+||..+..-....   ...... . ....+|+.++.|+.++.+.+||...+
T Consensus       240 ~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~  297 (337)
T d1gxra_         240 AVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ceecccccccccccccccccccc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            67777899999999776433221   111222 2 22347778888778888999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.62  E-value=0.052  Score=46.80  Aligned_cols=199  Identities=13%  Similarity=-0.010  Sum_probs=101.9

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCC--CCCCceeeeEEee---CCEEEEEecCCCCCCCCCCceEEEE
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE--LVTPRRWCAAGYS---RGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~--~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~vy  219 (387)
                      -+|.+|+..........+...++++|+.++.+.....  ....-.......+   ++.+|++.+.         ..+.++
T Consensus        27 ~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~---------~~i~~~   97 (314)
T d1pjxa_          27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---------LGLLVV   97 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---------TEEEEE
T ss_pred             CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC---------CeEEEE
Confidence            4678888754321111223568999999998876432  1111111122222   3467887542         246788


Q ss_pred             eCCCCccccCeEEcCCCCCCccccc-ceeEEEECCEEEEEeeeC---------------CeEEEEECCCCceeecccccc
Q 044903          220 DLMNGEKNSRWEKTGELKDGRFSRE-AIDAVGWKGKLCLVNVKG---------------AEGAVYDVVANTWDDMREGMV  283 (387)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~~~-~~~~v~~~g~lyv~gg~~---------------~~i~~yD~~~~~W~~~~~~~~  283 (387)
                      |+....    ...+........... +-.++.-+|.||+.....               ..++.++++. +...+...+.
T Consensus        98 ~~~g~~----~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~  172 (314)
T d1pjxa_          98 QTDGTF----EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQ  172 (314)
T ss_dssp             ETTSCE----EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEES
T ss_pred             eCCCcE----EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCcc
Confidence            887765    333332222211000 112333468899863221               2466666643 4444433222


Q ss_pred             CCCCCcEEEEeCC----eEEEEeCCCCeEEEEeCCCCc---eEEc-cccccc--cCceeE-EEeCCeEEEEecCCceEEE
Q 044903          284 RGWRGPVAAMDEE----VLYGIDENSCTLSKYDEVMDD---WKEV-VKSDLL--KGARHA-AAGGGRVCAVCENGGGIVV  352 (387)
Q Consensus       284 ~~~~~~~~~~~~g----~ly~~g~~~~~v~~yd~~~~~---W~~v-~~~~~~--~~~~~~-~~~~~~l~v~gg~~~~i~v  352 (387)
                      .. .+.+....++    .||+.+...+.|++||...+.   +.++ ...+..  ...-.+ +--+|.|||...+++.|.+
T Consensus       173 ~p-NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         173 FP-NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SE-EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ee-eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            11 1111112222    589988778899999865432   2222 111111  112223 3457899998777889999


Q ss_pred             EEecCC
Q 044903          353 VDVKAA  358 (387)
Q Consensus       353 ~d~~~~  358 (387)
                      ||++.+
T Consensus       252 ~dp~~g  257 (314)
T d1pjxa_         252 FGPDGG  257 (314)
T ss_dssp             ECTTCB
T ss_pred             EeCCCC
Confidence            998844

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.035  Score=48.47  Aligned_cols=189  Identities=15%  Similarity=0.091  Sum_probs=94.0

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      ++.+++.|+.+       ..+.++|..+.+......-............++...+.|+...        .+.++|..+..
T Consensus       132 ~~~~l~s~~~d-------g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~--------~i~~~d~~~~~  196 (388)
T d1erja_         132 DGKFLATGAED-------RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR--------TVRIWDLRTGQ  196 (388)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTTE
T ss_pred             CCCcceecccc-------cccccccccccccccccccccccccccccccccccccccccce--------eeeeeeccccc
Confidence            55666666632       3578888887765543221111111111222344444544322        57788887765


Q ss_pred             cccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeec-cccc--cCCCCCc--EEEE-eCCe
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDM-REGM--VRGWRGP--VAAM-DEEV  297 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~~--~~~~~~~--~~~~-~~g~  297 (387)
                          -..........     ...+.  .++.+.+.|+.+..+.+||..+...... ....  ..+....  +++. .+++
T Consensus       197 ----~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         197 ----CSLTLSIEDGV-----TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             ----EEEEEECSSCE-----EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             ----ccccccccccc-----ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence                33222111111     11122  2566667777667899999987754322 1111  1111111  2222 2456


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEcccc----------ccccCce-e-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          298 LYGIDENSCTLSKYDEVMDDWKEVVKS----------DLLKGAR-H-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~g~~~~~v~~yd~~~~~W~~v~~~----------~~~~~~~-~-~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +.+.++.++.+.+||..+..-......          ....... + ....+++.++.|+.++.|.+||..++
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            667777789999999865543222111          1111121 2 22336778888778889999998854

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.59  E-value=0.046  Score=46.32  Aligned_cols=129  Identities=11%  Similarity=0.030  Sum_probs=71.8

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      .+.+||..+.+.   -..+.... .     ...++.+  ++.+++.|+.+..+..||.........-........-.+++
T Consensus       207 ~v~i~d~~~~~~---~~~~~~h~-~-----~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
T d1tbga_         207 SAKLWDVREGMC---RQTFTGHE-S-----DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             EEEEEETTTTEE---EEEECCCS-S-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             eEEEEECCCCcE---EEEEeCCC-C-----CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence            678888877661   11111111 1     1222332  56666777766788999987765433221111111111222


Q ss_pred             E-eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCeEEEEecCCceEEEEE
Q 044903          293 M-DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       293 ~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d  354 (387)
                      . .++++.+.++.++.|.+||..+.  +.+.....+......+  ..+++.++.|+.++.|.+||
T Consensus       278 ~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         278 FSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECSSSCEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCCEEEEEECCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            2 24567777778899999998764  3444443333333222  33677778877788888886

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.34  E-value=0.048  Score=47.81  Aligned_cols=148  Identities=10%  Similarity=0.053  Sum_probs=85.4

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++++.|+.+.        .+.+||..+++    +..+..+..-.   ....++.  -++++.+.++.+..+.++|+.+
T Consensus        18 dg~~la~~~~~~--------~i~iw~~~~~~----~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPNNH--------EVHIYEKSGNK----WVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECSSS--------EEEEEEEETTE----EEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCEEEEEeCCC--------EEEEEECCCCC----EEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            455666665432        68899998888    87765443111   1122222  2566666666667899999999


Q ss_pred             CceeeccccccCCCCCcEEEE-eCCeEEEEeCCCCeEEEEeC--CCCceEEccccccccCceeEEE--eCCeEEEEecCC
Q 044903          273 NTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSKYDE--VMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENG  347 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-~~g~ly~~g~~~~~v~~yd~--~~~~W~~v~~~~~~~~~~~~~~--~~~~l~v~gg~~  347 (387)
                      +.|............-.++.. .+++.++.+..++.+.+|+.  ..+.+..............++.  -+++.++.|+.+
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            988755421111111112222 25666666666777776654  4444544333333333333333  367788887788


Q ss_pred             ceEEEEEecC
Q 044903          348 GGIVVVDVKA  357 (387)
Q Consensus       348 ~~i~v~d~~~  357 (387)
                      +.+.+||...
T Consensus       163 ~~v~v~~~~~  172 (371)
T d1k8kc_         163 FKCRIFSAYI  172 (371)
T ss_dssp             SCEEEEECCC
T ss_pred             cEEEEEeecc
Confidence            8899998764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.20  E-value=0.12  Score=43.06  Aligned_cols=64  Identities=9%  Similarity=0.090  Sum_probs=43.4

Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++++++.++.++.+.+||.++.+...+........-.+++ ..+++.++.++.++.+.+||..+.
T Consensus       147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5667777878899999999888766554332222222232 346677777777888999998754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.25  Score=40.09  Aligned_cols=127  Identities=10%  Similarity=0.050  Sum_probs=70.9

Q ss_pred             eEEEEeCCCCccccCeEE-cCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEE
Q 044903          215 SVEKWDLMNGEKNSRWEK-TGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~-~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                      .+.+||..+.+    -.. +....   .   ....+..++...+.++.+..+.+||+.+..-.........   ......
T Consensus       159 ~i~~~d~~~~~----~~~~~~~~~---~---~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~~~  225 (293)
T d1p22a2         159 TIKVWNTSTCE----FVRTLNGHK---R---GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRCIR  225 (293)
T ss_dssp             EEEEEETTTCC----EEEEEECCS---S---CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS---CEEEEE
T ss_pred             ceeeecCCCCc----EEEEEcccc---c---ccccccCCCCeEEEecCCCEEEEEecccceeeeeecccce---eeeecc
Confidence            67888887766    221 11111   1   1233444555556666667899999987655433221111   122334


Q ss_pred             eCCeEEEEeCCCCeEEEEeCCCC-------ceEEccccccccCceeEEEeCCeEEEEecCCceEEEEE
Q 044903          294 DEEVLYGIDENSCTLSKYDEVMD-------DWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       294 ~~g~ly~~g~~~~~v~~yd~~~~-------~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d  354 (387)
                      .++..++.++.++.|.+||..+.       .+..+.....+......+..+++.++.|+.++.|.+||
T Consensus       226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             ccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            45666677778899999986431       12222222223333333455777778877788898887

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.35  Score=40.51  Aligned_cols=105  Identities=10%  Similarity=-0.059  Sum_probs=60.6

Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc
Q 044903          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA  330 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~  330 (387)
                      .++.+.+.+.....+..||..+.+-.......... .........+...+.+..++.+.+||..+..-..  ........
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~h~~~  245 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-IYSTIYDHERKRCISASMDTTIRIWDLENGELMY--TLQGHTAL  245 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE--EECCCSSC
T ss_pred             cccceeeeecccceeeeeecccccceeeeeccccc-cccccccccceeeecccccceEEeeecccccccc--cccccccc
Confidence            34555555555578888998776544332211111 0111122345566666678889999987764332  22223333


Q ss_pred             eeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          331 RHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       331 ~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ..++..+++.++.|+.++.|.+||..+.
T Consensus       246 v~~~~~~~~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         246 VGLLRLSDKFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             CCEEEECSSEEEEECTTSEEEEEETTTC
T ss_pred             ccccccccceeeeeeccccccccccccc
Confidence            4455566777777777788888887743

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.75  E-value=0.46  Score=39.97  Aligned_cols=190  Identities=12%  Similarity=-0.027  Sum_probs=100.1

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      -+|.||+....       ...++++||... .+.+...+. +....+..-++++||++-...     .+ .....+....
T Consensus        37 pdG~l~vt~~~-------~~~I~~i~p~g~-~~~~~~~~~-~~~gla~~~dG~l~v~~~~~~-----~~-~~~~~~~~~~  101 (302)
T d2p4oa1          37 PDGTIFVTNHE-------VGEIVSITPDGN-QQIHATVEG-KVSGLAFTSNGDLVATGWNAD-----SI-PVVSLVKSDG  101 (302)
T ss_dssp             TTSCEEEEETT-------TTEEEEECTTCC-EEEEEECSS-EEEEEEECTTSCEEEEEECTT-----SC-EEEEEECTTS
T ss_pred             CCCCEEEEeCC-------CCEEEEEeCCCC-EEEEEcCCC-CcceEEEcCCCCeEEEecCCc-----eE-EEEEeccccc
Confidence            57788887542       257899998865 444433332 222222233678999864322     11 1122233333


Q ss_pred             ccccCeEEcCCCCCCcccccceeE-EEECCEEEEEeeeCCeEEEEECCCCc---eeecccccc----CCC-CCcEEEEeC
Q 044903          225 EKNSRWEKTGELKDGRFSREAIDA-VGWKGKLCLVNVKGAEGAVYDVVANT---WDDMREGMV----RGW-RGPVAAMDE  295 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~~~~~~~-v~~~g~lyv~gg~~~~i~~yD~~~~~---W~~~~~~~~----~~~-~~~~~~~~~  295 (387)
                      +    -..+...+.....   ... ..-+|.+|+.......+..+|+....   |..-+....    ... ....++..+
T Consensus       102 ~----~~~~~~~~~~~~~---n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1         102 T----VETLLTLPDAIFL---NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             C----EEEEEECTTCSCE---EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             c----eeeccccCCcccc---ceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence            3    3344333322211   222 22478888775544688888887663   222211111    111 122344567


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCce-eEEEeCCeEEEEecCCceEEEEEec
Q 044903          296 EVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGAR-HAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       296 g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~-~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                      +.+|+.....+.|++++.+...-...... ......- .++.-+|.||+....++.+..+++.
T Consensus       175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            88999988888999998766532211111 0011112 2334577888886667778888776

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.74  E-value=0.31  Score=41.27  Aligned_cols=185  Identities=14%  Similarity=-0.004  Sum_probs=97.6

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      +|+++.++..        .++++||..++...+++.  ..+.....-.-+++..++.|...      -..+.+||..+++
T Consensus        14 dG~~~a~~~~--------g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~------g~~v~v~d~~~~~   77 (360)
T d1k32a3          14 DGDLIAFVSR--------GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTRE------GDFLGIYDYRTGK   77 (360)
T ss_dssp             GGGCEEEEET--------TEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETT------EEEEEEEETTTCC
T ss_pred             CCCEEEEEEC--------CeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCC------CCEEEEEECCCCc
Confidence            5555555431        367888888888888742  22322222233666655554432      1257899999988


Q ss_pred             cccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeC--
Q 044903          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE--  303 (387)
Q Consensus       226 ~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~--  303 (387)
                          -..+..-....    ...+..-+|+..+.++....+..+|.++..-..+........ .......+|+..++..  
T Consensus        78 ----~~~~~~~~~~v----~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~spdg~~la~~~~~  148 (360)
T d1k32a3          78 ----AEKFEENLGNV----FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI-TDFTISDNSRFIAYGFPL  148 (360)
T ss_dssp             ----EEECCCCCCSE----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC-CCEEECTTSCEEEEEEEE
T ss_pred             ----EEEeeCCCceE----Eeeeecccccccceeccccccccccccccceeeeeecccccc-cchhhccceeeeeeeccc
Confidence                66665332221    011222367766676666788999998776544432111111 1122233455444321  


Q ss_pred             --------CCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEec
Q 044903          304 --------NSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       304 --------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~  356 (387)
                              ..+.+.+||..+..=..+.... ..........+|+.+++++....+.++|..
T Consensus       149 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         149 KHGETDGYVMQAIHVYDMEGRKIFAATTEN-SHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTEEEECSCSS-SBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cccceeeccccceeeeccccCceeeecccc-cccccccccCCCCEEEEEeCCCceEccccc
Confidence                    1235888999876332222111 111123344567766666655555666654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.66  E-value=0.54  Score=40.06  Aligned_cols=165  Identities=10%  Similarity=-0.022  Sum_probs=91.1

Q ss_pred             eEEE-eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCC-CC-CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEE
Q 044903          141 QLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE-LV-TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVE  217 (387)
Q Consensus       141 ~~~~-~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~-~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  217 (387)
                      .++. -+|.+|+.....   ......+..+++.+........ .. ..+..-.++.-+|.+|+......  .......+.
T Consensus        86 gla~~~dG~l~va~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~--~~~~~g~v~  160 (319)
T d2dg1a1          86 AIKIHKDGRLFVCYLGD---FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY--STNPLGGVY  160 (319)
T ss_dssp             EEEECTTSCEEEEECTT---SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB--TTBCCEEEE
T ss_pred             EEEECCCCCEEEEecCC---CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccc--cccCcceeE
Confidence            3433 467888874321   1233457788888877655332 22 22223333444678888643322  122345678


Q ss_pred             EEeCCCCccccCeEEcC-CCCCCcccccceeEEEE--CC-EEEEEeeeCCeEEEEECCCCc---ee---eccccccCCCC
Q 044903          218 KWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGW--KG-KLCLVNVKGAEGAVYDVVANT---WD---DMREGMVRGWR  287 (387)
Q Consensus       218 vyd~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~--~g-~lyv~gg~~~~i~~yD~~~~~---W~---~~~~~~~~~~~  287 (387)
                      .+++....    .+.+. .+..       ..+..+  ++ .||+.......+..||...+.   ..   .... ...+..
T Consensus       161 ~~~~dg~~----~~~~~~~~~~-------pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~-~~~~~~  228 (319)
T d2dg1a1         161 YVSPDFRT----VTPIIQNISV-------ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-YFTGHE  228 (319)
T ss_dssp             EECTTSCC----EEEEEEEESS-------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-ECCSSS
T ss_pred             EEecccce----eEEEeeccce-------eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeee-ccCCcc
Confidence            88888776    65543 2221       112333  34 689886666789999876431   11   1111 011111


Q ss_pred             Cc-EEEE-eCCeEEEEeCCCCeEEEEeCCCCceEEcc
Q 044903          288 GP-VAAM-DEEVLYGIDENSCTLSKYDEVMDDWKEVV  322 (387)
Q Consensus       288 ~~-~~~~-~~g~ly~~g~~~~~v~~yd~~~~~W~~v~  322 (387)
                      .+ .+++ .+|.||+.....+.|.+||++.+.-.++.
T Consensus       229 ~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~  265 (319)
T d2dg1a1         229 GPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQIL  265 (319)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEE
T ss_pred             ceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEe
Confidence            11 2333 36789999877789999999877665554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.52  Score=39.11  Aligned_cols=145  Identities=12%  Similarity=-0.003  Sum_probs=91.2

Q ss_pred             eeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcC--CCCCCcccccceeEEE--ECCEEEEEeeeC-CeEEE
Q 044903          193 YSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAV  267 (387)
Q Consensus       193 ~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~--~~~~~~~~~~~~~~v~--~~g~lyv~gg~~-~~i~~  267 (387)
                      ..+++||+.-..        ...++++++....    -..+.  .+..|      ...++  .+|.||+..... ..|+.
T Consensus        86 ~~~~~lY~~d~~--------~~~I~v~~~~g~~----~~~~~~~~~~~P------~~l~vd~~~g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          86 WIHSNIYWTDSV--------LGTVSVADTKGVK----RKTLFRENGSKP------RAIVVDPVHGFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             TTTTEEEEEETT--------TTEEEEEETTSSS----EEEEEECTTCCE------EEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             eccceEEEEecC--------CCEEEeEecCCce----EEEEEcCCCCCc------ceEEEEcccCeEEEeccCCCcceeE
Confidence            358999997432        2378899887665    33322  12111      22333  378999885322 57888


Q ss_pred             EECCCCceeecc-ccccCCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCceEEccccc-cccCceeEEEeCCeEEEE
Q 044903          268 YDVVANTWDDMR-EGMVRGWRGPVAAM--DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD-LLKGARHAAAGGGRVCAV  343 (387)
Q Consensus       268 yD~~~~~W~~~~-~~~~~~~~~~~~~~--~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~-~~~~~~~~~~~~~~l~v~  343 (387)
                      .++....-+.+- ..+..   ...+++  .+++||+.+...+.|..+|++...=..+.... ....+++++..+++||+.
T Consensus       148 ~~~dGs~~~~l~~~~~~~---p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~t  224 (266)
T d1ijqa1         148 GGLNGVDIYSLVTENIQW---PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT  224 (266)
T ss_dssp             EETTSCCEEEEECSSCSC---EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEE
T ss_pred             eccCCCceecccccccce---eeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEE
Confidence            888755444432 21111   123333  36889999887889999998765433333222 233467888999999999


Q ss_pred             ecCCceEEEEEecCC
Q 044903          344 CENGGGIVVVDVKAA  358 (387)
Q Consensus       344 gg~~~~i~v~d~~~~  358 (387)
                      -...+.|+.+|..++
T Consensus       225 d~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         225 DIINEAIFSANRLTG  239 (266)
T ss_dssp             ETTTTEEEEEETTTC
T ss_pred             ECCCCeEEEEECCCC
Confidence            777889999987754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.51  E-value=0.29  Score=40.99  Aligned_cols=62  Identities=11%  Similarity=0.057  Sum_probs=40.0

Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEE--EeCCeEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+.+++.+..++.+.+||..+.+-.  ............+  ..++++++.|+.++.+.++|....
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~~~~--~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ccceeEEeecCceEEEEECCCCcEE--EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            4567777777889999998776422  2222222222222  236778888778888999988854

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.52  Score=38.50  Aligned_cols=174  Identities=11%  Similarity=-0.012  Sum_probs=85.8

Q ss_pred             cEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccc
Q 044903          166 PLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA  245 (387)
Q Consensus       166 ~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~  245 (387)
                      +..++....+....-.............-++...+.++.+.        .+.+||..+.+    ....-.....     .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------~~~~~~~~~~~----~~~~~~~~~~-----~  145 (317)
T d1vyhc1          83 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK--------TIKMWEVQTGY----CVKTFTGHRE-----W  145 (317)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTS--------EEEEEETTTCC----EEEEEECCSS-----C
T ss_pred             cccccccccccccccccccccceeeeccCCCceEEeeccCc--------ceeEeecccce----eeeEEccCCC-----c
Confidence            34556655554443222222222222222444555555433        56788888776    4332211111     1


Q ss_pred             eeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccc----------c---------CCCCCcEEEEeCCeEEEEeCC
Q 044903          246 IDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGM----------V---------RGWRGPVAAMDEEVLYGIDEN  304 (387)
Q Consensus       246 ~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~----------~---------~~~~~~~~~~~~g~ly~~g~~  304 (387)
                      ...+.  -++.+++.++....+..+|..+......-...          +         ............+.+.+.+..
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         146 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             ceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            22222  24566666666677888887765432210000          0         000011112234456666677


Q ss_pred             CCeEEEEeCCCCceEEccccccccCc--eeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          305 SCTLSKYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       305 ~~~v~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.+..||..+.+-..  ........  ..+...++++++.|+.++.+.+||..+.
T Consensus       226 d~~i~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         226 DKTIKMWDVSTGMCLM--TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             TSEEEEEETTTTEEEE--EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             CCEEEEEECCCCcEEE--EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            8899999998775432  22222222  2233447778888788889999998854

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.58  Score=38.72  Aligned_cols=183  Identities=9%  Similarity=-0.038  Sum_probs=106.8

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC--CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP--ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.||..-.       ....+.+.+.....-+.+.  .+..+. ..+.-..+++||+.....        ..+++.++.
T Consensus        46 ~~~~iywsd~-------~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~--------~~I~~~~~d  109 (263)
T d1npea_          46 VDKVVYWTDI-------SEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQL--------DRIEVAKMD  109 (263)
T ss_dssp             TTTEEEEEET-------TTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTT--------TEEEEEETT
T ss_pred             CCCEEEEEEC-------CCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCC--------CEEEEEecC
Confidence            4678887632       1245666666554444332  122221 122223488999985432        367888876


Q ss_pred             CCccccCeEEcC--CCCCCcccccceeEEE--ECCEEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCc-EEEE--
Q 044903          223 NGEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGP-VAAM--  293 (387)
Q Consensus       223 t~~~~~~W~~~~--~~~~~~~~~~~~~~v~--~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~--  293 (387)
                      ...    =+.+.  .+..+      ...++  .+|.+|+.....  ..++..++....-+.+-.   .+...+ .+++  
T Consensus       110 g~~----~~~l~~~~l~~p------~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~---~~~~~P~glaiD~  176 (263)
T d1npea_         110 GTQ----RRVLFDTGLVNP------RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ---DNLGLPNGLTFDA  176 (263)
T ss_dssp             SCS----CEEEECSSCSSE------EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC---TTCSCEEEEEEET
T ss_pred             Cce----EEEEecccccCC------cEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee---ecccccceEEEee
Confidence            554    22222  12211      22233  478899874322  458888876554443321   112222 3343  


Q ss_pred             eCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          294 DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+++||+.+...+.|.+.|.+...=+.+..  ....+++++..+++||+.-.+.+.|+.+|...+
T Consensus       177 ~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~--~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCCeEEEEC--CCCCcEEEEEECCEEEEEECCCCEEEEEECCCC
Confidence            368899998778899999997654333321  223457888899999999777889999999854

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.36  E-value=0.36  Score=40.48  Aligned_cols=154  Identities=12%  Similarity=0.038  Sum_probs=74.9

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCCCCceeeeEEee-C-CEEEEEecCCCCCCCCCCceEEEEeCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGYS-R-GAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t  223 (387)
                      +++.++.++.       .+.+.+||..|++-...-.++....-.+.+.. + ..+||.+..+.        .+.+||..+
T Consensus         7 ~~~~l~~~~~-------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~--------~v~~~d~~t   71 (346)
T d1jmxb_           7 GHEYMIVTNY-------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG--------DIYGIDLDT   71 (346)
T ss_dssp             TCEEEEEEET-------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT--------EEEEEETTT
T ss_pred             CCcEEEEEcC-------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCC--------cEEEEeCcc
Confidence            5666666653       25789999999976543233332222222322 3 46788765533        688999988


Q ss_pred             CccccCeEEcCCCCCCccccccee-EEEECC-EEEEEeeeC-----------CeEEEEECCCCcee-eccccccCCC-CC
Q 044903          224 GEKNSRWEKTGELKDGRFSREAID-AVGWKG-KLCLVNVKG-----------AEGAVYDVVANTWD-DMREGMVRGW-RG  288 (387)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~~~~~~-~v~~~g-~lyv~gg~~-----------~~i~~yD~~~~~W~-~~~~~~~~~~-~~  288 (387)
                      .+..  .+................ +..-|| .+|+.+...           ..+.++|..+.+-. .+.. ...+. ..
T Consensus        72 ~~~~--~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~  148 (346)
T d1jmxb_          72 CKNT--FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT-FPMPRQVY  148 (346)
T ss_dssp             TEEE--EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE-EECCSSCC
T ss_pred             Ceee--eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe-eeccCceE
Confidence            7622  211111110000000011 122244 566664321           45666776654322 1111 11111 11


Q ss_pred             cEEEEeCCeEEEEeCCCCeEEEEeCCCCceEE
Q 044903          289 PVAAMDEEVLYGIDENSCTLSKYDEVMDDWKE  320 (387)
Q Consensus       289 ~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W~~  320 (387)
                      ......++++|+.+   ..+.+||..+.+...
T Consensus       149 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  177 (346)
T d1jmxb_         149 LMRAADDGSLYVAG---PDIYKMDVKTGKYTV  177 (346)
T ss_dssp             CEEECTTSCEEEES---SSEEEECTTTCCEEE
T ss_pred             EEEecCCCEEEEeC---CcceEEEccCCCEEE
Confidence            22233456677663   467788887766654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.21  Score=41.07  Aligned_cols=145  Identities=14%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++++.|+.+.        .+.+||..+.+    ....-....     .....+.+  ++.+.+.+.....+..++...
T Consensus        28 ~~~~l~s~s~Dg--------~i~iWd~~~~~----~~~~~~~h~-----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          28 VFSVMVSASEDA--------TIKVWDYETGD----FERTLKGHT-----DSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             SSSEEEEEESSS--------CEEEEETTTCC----CCEEECCCS-----SCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             CCCEEEEEeCCC--------eEEEEECCCCC----EEEEEeCCC-----CcEEEEeeecccccccccccccccccccccc
Confidence            456677776543        68889988876    322111110     01112222  344544444445556666665


Q ss_pred             CceeeccccccCCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEecCCceEE
Q 044903          273 NTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIV  351 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~  351 (387)
                      .............  ..... ..++...+.++.++.+.+||.++.....................++.+++.++.++.+.
T Consensus        91 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          91 FECIRTMHGHDHN--VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             SCEEECCCCCSSC--EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccccccccc--ceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence            5544332211111  11122 22445555666788999999988765443221111111222234677788877788888


Q ss_pred             EEEecCC
Q 044903          352 VVDVKAA  358 (387)
Q Consensus       352 v~d~~~~  358 (387)
                      ++|....
T Consensus       169 ~~~~~~~  175 (317)
T d1vyhc1         169 VWVVATK  175 (317)
T ss_dssp             EEETTTC
T ss_pred             EEeeccc
Confidence            8888754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.89  E-value=0.91  Score=40.35  Aligned_cols=176  Identities=13%  Similarity=0.002  Sum_probs=91.7

Q ss_pred             CccEEEeCCCCceeeCCCCCCCceeeeEEee-CC-EEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcc
Q 044903          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGYS-RG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vydp~t~~W~~l~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~  241 (387)
                      ..+.++|..|++-...-+  ....-+..+.- +| .+|++ +.+        ..+.++|..+.+    -..+..++....
T Consensus        42 g~v~v~D~~t~~v~~~~~--~g~~~~~v~fSpDG~~l~~~-s~d--------g~v~~~d~~t~~----~~~~~~i~~~~~  106 (432)
T d1qksa2          42 GQIALIDGSTYEIKTVLD--TGYAVHISRLSASGRYLFVI-GRD--------GKVNMIDLWMKE----PTTVAEIKIGSE  106 (432)
T ss_dssp             TEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEE-ETT--------SEEEEEETTSSS----CCEEEEEECCSE
T ss_pred             CEEEEEECCCCcEEEEEe--CCCCeeEEEECCCCCEEEEE-cCC--------CCEEEEEeeCCC----ceEEEEEecCCC
Confidence            567888988887655322  22222222222 34 56665 332        268899988876    433333332211


Q ss_pred             cccceeEEEE------CCE-EEEEeeeCCeEEEEECCCCceeecccc-------ccCCCC-CcEEE--Ee-CCeEEEEeC
Q 044903          242 SREAIDAVGW------KGK-LCLVNVKGAEGAVYDVVANTWDDMREG-------MVRGWR-GPVAA--MD-EEVLYGIDE  303 (387)
Q Consensus       242 ~~~~~~~v~~------~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~-------~~~~~~-~~~~~--~~-~g~ly~~g~  303 (387)
                          +...++      ||+ +|+.+.....+.++|.++.+-......       ...... ....+  .. +..+++-..
T Consensus       107 ----~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         107 ----ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             ----EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             ----CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence                222222      564 677777778999999988765433210       000001 11111  22 334555555


Q ss_pred             CCCeEEEEeCCCCceEEccccccccCceeEE-EeCCe-EEEEecCCceEEEEEecCC
Q 044903          304 NSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       304 ~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~~-l~v~gg~~~~i~v~d~~~~  358 (387)
                      ..+.+.++|..+.+-.++...+.....+.++ .-+|+ +++.+..+..+.++|....
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            6788999998765444433333323333232 33444 5555555677777777643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.77  E-value=0.68  Score=38.48  Aligned_cols=52  Identities=12%  Similarity=0.042  Sum_probs=33.1

Q ss_pred             CCeEEEEeCCCCceEEccccccccCceeEE-EeCCeEEEEecCCceEEEEEecCC
Q 044903          305 SCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       305 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ++.+.+||.++.+.......  .....+++ .-+|+.+++++.++.|.+||..+.
T Consensus       259 ~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         259 YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             cccEEEEECCCCcEEEEEcC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            35788999988765543322  22223333 346665556677888999999854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.74  E-value=0.71  Score=38.74  Aligned_cols=145  Identities=9%  Similarity=-0.019  Sum_probs=81.0

Q ss_pred             CCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeCCeEEEEEC--CC
Q 044903          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV--VA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~~~i~~yD~--~~  272 (387)
                      +|+||+.....        ..+..+|+...     .+.....+...    ...+..-+|.+|+.+.....+..++.  ..
T Consensus        38 dG~l~vt~~~~--------~~I~~i~p~g~-----~~~~~~~~~~~----~gla~~~dG~l~v~~~~~~~~~~~~~~~~~  100 (302)
T d2p4oa1          38 DGTIFVTNHEV--------GEIVSITPDGN-----QQIHATVEGKV----SGLAFTSNGDLVATGWNADSIPVVSLVKSD  100 (302)
T ss_dssp             TSCEEEEETTT--------TEEEEECTTCC-----EEEEEECSSEE----EEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             CCCEEEEeCCC--------CEEEEEeCCCC-----EEEEEcCCCCc----ceEEEcCCCCeEEEecCCceEEEEEecccc
Confidence            67898875542        26788888765     44444333211    12223347889988655545555443  33


Q ss_pred             CceeeccccccCCCCCcEE-EEeCCeEEEEeCCCCeEEEEeCCCCceEEccccc---c------ccCceeEEEeCCeEEE
Q 044903          273 NTWDDMREGMVRGWRGPVA-AMDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSD---L------LKGARHAAAGGGRVCA  342 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~-~~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~---~------~~~~~~~~~~~~~l~v  342 (387)
                      .+-+.+.. .+.......+ .-.++++|+.....+.++.+|+....=......+   .      ......+...++.+|+
T Consensus       101 ~~~~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~  179 (302)
T d2p4oa1         101 GTVETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYV  179 (302)
T ss_dssp             SCEEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEE
T ss_pred             cceeeccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceee
Confidence            33333322 1111111122 2356789988777789999998876432221111   0      1112345566888888


Q ss_pred             EecCCceEEEEEecC
Q 044903          343 VCENGGGIVVVDVKA  357 (387)
Q Consensus       343 ~gg~~~~i~v~d~~~  357 (387)
                      .......++.+|...
T Consensus       180 ~~~~~~~i~~~~~~~  194 (302)
T d2p4oa1         180 SNTEKMLLLRIPVDS  194 (302)
T ss_dssp             EETTTTEEEEEEBCT
T ss_pred             ecCCCCeEEeccccc
Confidence            877778888887764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.31  E-value=0.98  Score=37.89  Aligned_cols=130  Identities=13%  Similarity=-0.002  Sum_probs=74.2

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEE--CCEEEEEeeeC--CeEEEEECCCCceeeccccccCCCCCcE
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~--~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      .+.+||..++.    ...++.  ..+     ...+.+  ||+..++.+..  ..+.++|.+++.-+.+..... .  -..
T Consensus        25 ~v~v~d~~~~~----~~~~~~--~~~-----v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~-~--v~~   90 (360)
T d1k32a3          25 QAFIQDVSGTY----VLKVPE--PLR-----IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG-N--VFA   90 (360)
T ss_dssp             EEEEECTTSSB----EEECSC--CSC-----EEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC-S--EEE
T ss_pred             eEEEEECCCCc----EEEccC--CCC-----EEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc-e--EEe
Confidence            56777777776    666531  111     223333  78766655444  468899999887776643111 1  112


Q ss_pred             EE-EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEEeCCeEEEEec----------CCceEEEEEecCC
Q 044903          291 AA-MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCE----------NGGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~l~v~gg----------~~~~i~v~d~~~~  358 (387)
                      ++ ..+++..+.++.++.++.|+.++..-..+...............+|+.++++.          ....+.++|...+
T Consensus        91 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3          91 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             eeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence            22 33566666666788999999988776554433222222233445666665533          1245778888754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.16  E-value=0.75  Score=40.95  Aligned_cols=144  Identities=12%  Similarity=-0.005  Sum_probs=76.9

Q ss_pred             ceEEEEeCCCCccccCeEEcCCCCCCcccccceeE-EEECCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEE
Q 044903          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDA-VGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~-v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      ..+.++|..+++    =...  ++....   .+.. ..-||+..++++.+..+.++|..+.+-..... ++.+.....++
T Consensus        42 g~v~v~D~~t~~----v~~~--~~~g~~---~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~-i~~~~~~~~~~  111 (432)
T d1qksa2          42 GQIALIDGSTYE----IKTV--LDTGYA---VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE-IKIGSEARSIE  111 (432)
T ss_dssp             TEEEEEETTTCC----EEEE--EECSSC---EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-EECCSEEEEEE
T ss_pred             CEEEEEECCCCc----EEEE--EeCCCC---eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE-EecCCCCCCeE
Confidence            378888988887    3222  222211   1222 23366644445556789999998776543322 11111111222


Q ss_pred             E------eCCeEEEEeCCCCeEEEEeCCCCceEEcccccc-----------ccCceeEEEeCCeE-EEEecCCceEEEEE
Q 044903          293 M------DEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDL-----------LKGARHAAAGGGRV-CAVCENGGGIVVVD  354 (387)
Q Consensus       293 ~------~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~-----------~~~~~~~~~~~~~l-~v~gg~~~~i~v~d  354 (387)
                      .      .|..||+.+..++.+.+||.++.+-........           .+....++..+|.. ++.....+.+.++|
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            1      234578877778899999999887665432111           11112233344544 44444567888888


Q ss_pred             ecCCCCCceeEEc
Q 044903          355 VKAAAAPTIFVVD  367 (387)
Q Consensus       355 ~~~~~~~~~W~~~  367 (387)
                      .........|++.
T Consensus       192 ~~~~~~~~~~~i~  204 (432)
T d1qksa2         192 YTDLNNLKTTEIS  204 (432)
T ss_dssp             TTCSSEEEEEEEE
T ss_pred             ccCCCcceEEEEc
Confidence            7754333455553

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.89  E-value=0.96  Score=37.18  Aligned_cols=108  Identities=7%  Similarity=-0.160  Sum_probs=61.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceEEccccccc--
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD--DWKEVVKSDLL--  327 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~--~W~~v~~~~~~--  327 (387)
                      ++.+.+.|+....+.++|.........................++...+.++.++.+.+||..+.  ...........  
T Consensus        68 ~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~  147 (342)
T d1yfqa_          68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT  147 (342)
T ss_dssp             SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred             CCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccc
Confidence            35566666666788999987665443322111111112223445566666667889999987532  22222222111  


Q ss_pred             --cCceeEEEeCCeEEEEecCCceEEEEEecCCC
Q 044903          328 --KGARHAAAGGGRVCAVCENGGGIVVVDVKAAA  359 (387)
Q Consensus       328 --~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~~  359 (387)
                        ..........+..++.+..++.+.++|.....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  181 (342)
T d1yfqa_         148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE  181 (342)
T ss_dssp             SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCT
T ss_pred             cceeeeeeeeccCCceeeecCCCcEEEEecccCc
Confidence              11233445667777887888899999987553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=1.4  Score=35.75  Aligned_cols=171  Identities=12%  Similarity=0.007  Sum_probs=81.5

Q ss_pred             ccEEEeCCCCceeeCCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCccccc
Q 044903          165 RPLIFDPICRTWTFGPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vydp~t~~W~~l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~  244 (387)
                      .+..++..+..+...-....   ...+...++..+++|+.+.       ..+.+|+.....      ....+..+..  .
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~-------~~v~~~~~~~~~------~~~~~~~~~~--~  163 (287)
T d1pgua2         102 DLLILQSFTGDIIKSVRLNS---PGSAVSLSQNYVAVGLEEG-------NTIQVFKLSDLE------VSFDLKTPLR--A  163 (287)
T ss_dssp             EEEEEETTTCCEEEEEECSS---CEEEEEECSSEEEEEETTT-------SCEEEEETTEEE------EEEECSSCCS--S
T ss_pred             cceeeeccceeeeeeccccc---eeeeeeccCcceeeecccc-------ceeeeeeccccc------eeeeeeeccC--C
Confidence            45667777766554322211   1223334555555665432       256777764332      2111111111  1


Q ss_pred             ceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCC------C----CCcEEEEeCCeEEEEeCCCCeEEEEe
Q 044903          245 AIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRG------W----RGPVAAMDEEVLYGIDENSCTLSKYD  312 (387)
Q Consensus       245 ~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~------~----~~~~~~~~~g~ly~~g~~~~~v~~yd  312 (387)
                      ....+.  -+|.+.+.|.....+.+||..+..-..........      +    ........++.+++.++.++.|++||
T Consensus       164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~  243 (287)
T d1pgua2         164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  243 (287)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEE
Confidence            122222  35666666666678999998765432211000000      0    00011123455666777889999999


Q ss_pred             CCCCceEEccccccccCc-eeEE-EeCCeEEEEecCCceEEEEEe
Q 044903          313 EVMDDWKEVVKSDLLKGA-RHAA-AGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       313 ~~~~~W~~v~~~~~~~~~-~~~~-~~~~~l~v~gg~~~~i~v~d~  355 (387)
                      .++.. ..+.....+... .+++ .-+++ ++.+|.++.+.+||+
T Consensus       244 ~~~~~-~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         244 VKRPM-KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             SSCTT-CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             CCCCC-eEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            86531 111111112222 2333 33554 556667788888886

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.20  E-value=2  Score=35.95  Aligned_cols=104  Identities=11%  Similarity=-0.003  Sum_probs=60.8

Q ss_pred             EEEEeeeCCeEEEEECCCCcee-eccccccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEc-ccc--cccc
Q 044903          255 LCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEV-VKS--DLLK  328 (387)
Q Consensus       255 lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v-~~~--~~~~  328 (387)
                      +.+.++....+..||..+.+-. ...........-.+++..  ++.+++.++.++.|.+||.++.+-... ...  +...
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~  253 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  253 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccc
Confidence            4455666678888987654322 111100111011223332  357777777889999999987754332 211  1112


Q ss_pred             CceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          329 GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       329 ~~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      ..+++...+|+.++.++.++.+.+||+..+
T Consensus       254 ~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         254 GIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             CEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             ceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            234444567888888888899999999865

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.37  E-value=1.1  Score=41.39  Aligned_cols=118  Identities=11%  Similarity=0.004  Sum_probs=73.3

Q ss_pred             eeEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccc-------ccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903          246 IDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREG-------MVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD  316 (387)
Q Consensus       246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~-------~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~  316 (387)
                      ..-++.+|+||+.... ..++++|.++.  .|+.-+..       ..........+..++++|+.. .++.++.+|.++.
T Consensus        60 stPiv~~g~vyv~t~~-~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~l~Alda~tG  137 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-LDGRLIALDAKTG  137 (560)
T ss_dssp             CCCEEETTEEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-TTSEEEEEETTTC
T ss_pred             eCCEEECCEEEEECCC-CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEe-CCCEEEEEECCCC
Confidence            4457899999987554 47899999877  69843210       111112334556678888775 4688999998775


Q ss_pred             --ceEEcccccc--ccCceeEEEeCCeEEEEecC-----CceEEEEEecCCCCCceeEEc
Q 044903          317 --DWKEVVKSDL--LKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       317 --~W~~v~~~~~--~~~~~~~~~~~~~l~v~gg~-----~~~i~v~d~~~~~~~~~W~~~  367 (387)
                        .|+.-...+.  ......-+..++.+++-+..     .+.+..+|..++  ...|+..
T Consensus       138 ~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG--~~~W~~~  195 (560)
T d1kv9a2         138 KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG--KLAWRFY  195 (560)
T ss_dssp             CEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC--CEEEEEE
T ss_pred             cEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCc--eEEeeee
Confidence              4665332222  11223445677777764322     246899998854  5678873

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.11  E-value=1.6  Score=40.41  Aligned_cols=119  Identities=9%  Similarity=0.050  Sum_probs=74.7

Q ss_pred             eEEEECCEEEEEeeeCCeEEEEEC-CCC--ceeecccccc-------CCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903          247 DAVGWKGKLCLVNVKGAEGAVYDV-VAN--TWDDMREGMV-------RGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD  316 (387)
Q Consensus       247 ~~v~~~g~lyv~gg~~~~i~~yD~-~~~--~W~~~~~~~~-------~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~  316 (387)
                      .-++.+|++|+.......+++.|. ++.  .|+.-+....       .......++..+++||+.. .++.+++.|.++.
T Consensus        57 tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~-~~g~l~alda~tG  135 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-ANGHLLALDAKTG  135 (571)
T ss_dssp             CCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-TTSEEEEEETTTC
T ss_pred             CCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEe-CCCcEEeeehhhh
Confidence            356789999998765567899986 344  7985432111       1111234567788888764 5789999999886


Q ss_pred             c--eEE-cccc-ccccCceeEEEeCCeEEEEecC-----CceEEEEEecCCCCCceeEEcC
Q 044903          317 D--WKE-VVKS-DLLKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVVDT  368 (387)
Q Consensus       317 ~--W~~-v~~~-~~~~~~~~~~~~~~~l~v~gg~-----~~~i~v~d~~~~~~~~~W~~~~  368 (387)
                      +  |+. +... +.......-+..+++|++-+..     .+.|..+|..++  ...|+...
T Consensus       136 ~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG--~~~W~~~t  194 (571)
T d2ad6a1         136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG--ELKWRAFA  194 (571)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC--CEEEEEES
T ss_pred             hhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCC--cEEEEEec
Confidence            4  765 2221 1111223446778888876542     357999998854  57798733

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.04  E-value=1.5  Score=40.72  Aligned_cols=115  Identities=13%  Similarity=0.026  Sum_probs=71.1

Q ss_pred             EEEECCEEEEEeeeCCeEEEEECCCC--ceeecccc-----c--cCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--
Q 044903          248 AVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREG-----M--VRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD--  316 (387)
Q Consensus       248 ~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~-----~--~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~--  316 (387)
                      -++.+|+||+.+.. ..++++|.+++  .|+.-...     .  ........+++.++++|+.. .++.++..|.++.  
T Consensus        73 Piv~~g~vyv~t~~-~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t-~~g~l~alda~tG~~  150 (573)
T d1kb0a2          73 PVVVDGIMYVSASW-SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-WDGRLIALDAATGKE  150 (573)
T ss_dssp             CEEETTEEEEECGG-GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-TTSEEEEEETTTCCE
T ss_pred             CEEECCEEEEECCC-CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe-cccceeeeccccccc
Confidence            46789999987544 47899999877  68753210     0  11111234566788888764 4678999998765  


Q ss_pred             ceEEccc-ccc--ccCceeEEEeCCeEEEEecC-----CceEEEEEecCCCCCceeEE
Q 044903          317 DWKEVVK-SDL--LKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       317 ~W~~v~~-~~~--~~~~~~~~~~~~~l~v~gg~-----~~~i~v~d~~~~~~~~~W~~  366 (387)
                      .|+.-.. .+.  ......-+.+++++++-+..     .+.|..+|..++  ...|+.
T Consensus       151 ~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG--~~~W~~  206 (573)
T d1kb0a2         151 VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETG--ERKWRW  206 (573)
T ss_dssp             EEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC--CEEEEE
T ss_pred             eecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCc--cceeee
Confidence            4765322 111  11223345667777764322     257899998853  467987

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.85  E-value=2  Score=36.67  Aligned_cols=67  Identities=7%  Similarity=-0.040  Sum_probs=40.1

Q ss_pred             EEEEeCCeEEEEeCC--------CCeEEEEeCCCCceEEccccccccCceeEE-EeCCe--EEEEecCCceEEEEEecCC
Q 044903          290 VAAMDEEVLYGIDEN--------SCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       290 ~~~~~~g~ly~~g~~--------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~~--l~v~gg~~~~i~v~d~~~~  358 (387)
                      +....++.+|+....        ...+++||.++.+  .+...+.......++ .-+|+  +|+.+.+++.+.+||..++
T Consensus       270 a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc--EeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            333445677776421        1358899998774  444333222222233 33654  7788777889999999865

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.68  E-value=1.8  Score=33.77  Aligned_cols=55  Identities=9%  Similarity=0.178  Sum_probs=39.0

Q ss_pred             CCEEEEEeeeCCeEEEEECCCC-----ceeeccccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 044903          252 KGKLCLVNVKGAEGAVYDVVAN-----TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDD  317 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~-----~W~~~~~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~  317 (387)
                      ++++|++-|  ...+.||..++     .|..++.       ..+++..+|++|++.  ....++||..+.+
T Consensus       110 ~~~~yfFkg--~~yw~yd~~~~~~~~~~w~gip~-------~daA~~~~g~~YfFk--g~~y~r~~~~~~~  169 (192)
T d1qhua1         110 DEGILFFQG--NRKWFWDLTTGTKKERSWPAVGN-------CTSALRWLGRYYCFQ--GNQFLRFNPVSGE  169 (192)
T ss_dssp             SSEEEEEET--TEEEEEETTTTEEEEECCTTSCC-------CSEEEEETTEEEEEE--TTEEEEECTTTCC
T ss_pred             CCeEEEEeC--CeEEEEeCCCCCcccccccCcCC-------cceeEEeCCcEEEEE--CCEEEEEcCCcce
Confidence            789999865  36788998765     3544332       235556789999995  4578999987764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.61  E-value=4.9  Score=36.77  Aligned_cols=117  Identities=17%  Similarity=0.185  Sum_probs=72.1

Q ss_pred             eEEEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCC--------ceeeeEEeeCCEEEEEecCCCCCCC
Q 044903          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RRWCAAGYSRGAVYVASGIGSQFSS  210 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~  210 (387)
                      .-++.++.||+....        ..++.+|..|.  .|+.-+..+..        ......+..+++||+....      
T Consensus        61 tPiv~~g~vyv~t~~--------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------  126 (560)
T d1kv9a2          61 TPLFHDGVIYTSMSW--------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD------  126 (560)
T ss_dssp             CCEEETTEEEEEEGG--------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT------
T ss_pred             CCEEECCEEEEECCC--------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC------
Confidence            346779999987652        46788888887  48764433211        1123445567888775321      


Q ss_pred             CCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCC--ceee
Q 044903          211 DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVAN--TWDD  277 (387)
Q Consensus       211 ~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~--~W~~  277 (387)
                         ..+..+|..+.+..  |+....-+..... .....+++++.+++-+...     ..+.+||.++.  .|+.
T Consensus       127 ---g~l~Alda~tG~~~--w~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         127 ---GRLIALDAKTGKAI--WSQQTTDPAKPYS-ITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             ---SEEEEEETTTCCEE--EEEECSCTTSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ---CEEEEEECCCCcEE--eccCccCccccee-eeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence               25788899998865  8765422222111 1245677899888743222     46899999987  5763

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=3.1  Score=33.97  Aligned_cols=148  Identities=12%  Similarity=0.002  Sum_probs=85.3

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC--CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP--ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.||+.-.       ....+.++++....-+.+-  .+..|+. .+....++.+|+.....       ...++..++.
T Consensus        87 ~~~~lY~~d~-------~~~~I~v~~~~g~~~~~~~~~~~~~P~~-l~vd~~~g~ly~~~~~~-------~~~I~r~~~d  151 (266)
T d1ijqa1          87 IHSNIYWTDS-------VLGTVSVADTKGVKRKTLFRENGSKPRA-IVVDPVHGFMYWTDWGT-------PAKIKKGGLN  151 (266)
T ss_dssp             TTTEEEEEET-------TTTEEEEEETTSSSEEEEEECTTCCEEE-EEEETTTTEEEEEECSS-------SCEEEEEETT
T ss_pred             ccceEEEEec-------CCCEEEeEecCCceEEEEEcCCCCCcce-EEEEcccCeEEEeccCC-------CcceeEeccC
Confidence            5889999743       1246888888766544421  1222321 11222368899875221       2367777776


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccccCCC-CCcEEEEeCCeEE
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGW-RGPVAAMDEEVLY  299 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~-~~~~~~~~~g~ly  299 (387)
                      ...    -..+..-... .+   ...+.  .+++||+.......|+.+|+....=+.+... .... ....+++.++.||
T Consensus       152 Gs~----~~~l~~~~~~-~p---~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~-~~~~~~p~~lav~~~~ly  222 (266)
T d1ijqa1         152 GVD----IYSLVTENIQ-WP---NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFEDKVF  222 (266)
T ss_dssp             SCC----EEEEECSSCS-CE---EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEETTEEE
T ss_pred             CCc----eecccccccc-ee---eEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC-CCcccccEEEEEECCEEE
Confidence            554    4443211111 10   22222  2688999977668899999875433333211 1111 1235778899999


Q ss_pred             EEeCCCCeEEEEeCCCC
Q 044903          300 GIDENSCTLSKYDEVMD  316 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~  316 (387)
                      +.+...+.|++.|..+.
T Consensus       223 ~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         223 WTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEETTTTEEEEEETTTC
T ss_pred             EEECCCCeEEEEECCCC
Confidence            99877888999886654

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=2.7  Score=32.61  Aligned_cols=149  Identities=15%  Similarity=0.082  Sum_probs=75.7

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceee------CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCce
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTF------GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKS  215 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~------l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  215 (387)
                      ++.++|.+|++-|.         .+|.++.....+..      -+.+|.....+-....++++|++-|.          .
T Consensus        14 v~~~~g~~y~Fkg~---------~~wr~~~~~~~~~p~~i~~~w~~lp~~IDAAf~~~~~~~~yffkg~----------~   74 (192)
T d1pexa_          14 ITSLRGETMIFKDR---------FFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGR----------K   74 (192)
T ss_dssp             EEEETTEEEEEETT---------EEEEECSSSSCCEEEEHHHHCTTSCSSCCEEEEETTTTEEEEEETT----------E
T ss_pred             EEEcCCeEEEEECC---------EEEEEcCCCCCCcccchhhhCcCCCCcccceEEEcCCCEEEEEcCC----------E
Confidence            44578999999872         34544433222211      12333322211111236788887664          3


Q ss_pred             EEEEeCCCCccccCe-EEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCce-----eeccc---ccc
Q 044903          216 VEKWDLMNGEKNSRW-EKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTW-----DDMRE---GMV  283 (387)
Q Consensus       216 v~vyd~~t~~~~~~W-~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W-----~~~~~---~~~  283 (387)
                      +++|+-.+-...  + +.+.....+.. .....++..   ++++|++-|  ...+.||..++.=     +.+..   +++
T Consensus        75 ~w~y~~~~~~~g--yPk~i~~~~~~~~-~~~idaA~~~~~~~~~y~Fkg--~~y~~y~~~~~~~~~~~pk~I~~~w~gvp  149 (192)
T d1pexa_          75 FWALNGYDILEG--YPKKISELGLPKE-VKKISAAVHFEDTGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFPGIG  149 (192)
T ss_dssp             EEEESTTCCCTT--CSEESTTTTCCTT-CCCCCEEEECTTTSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred             EEEEcCCcccCC--CCeEeeeeecCCC-CCCccEEEEECCCCEEEEEeC--CEEEEEcCccccccCCCcEEHhhcCCCCC
Confidence            466654433300  1 22332211111 112334443   589999855  4678888765531     11111   122


Q ss_pred             CCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce
Q 044903          284 RGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDW  318 (387)
Q Consensus       284 ~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W  318 (387)
                      ..  -.++...+|++|++.  ....++||..+.+-
T Consensus       150 ~~--vdAa~~~~g~~YfF~--g~~y~r~~~~~~~v  180 (192)
T d1pexa_         150 DK--VDAVYEKNGYIYFFN--GPIQFEYSIWSNRI  180 (192)
T ss_dssp             SC--CSEEEEETTEEEEEE--TTEEEEEETTTTEE
T ss_pred             CC--ceEEEEeCCEEEEEE--CCEEEEEeCCcCeE
Confidence            21  224446689999995  45889999877643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=90.89  E-value=3.9  Score=34.32  Aligned_cols=53  Identities=11%  Similarity=0.099  Sum_probs=32.1

Q ss_pred             CCCeEEEEeCCCCceEEccccccccCceeEE-EeCCe--EEEEecCCceEEEEEecCC
Q 044903          304 NSCTLSKYDEVMDDWKEVVKSDLLKGARHAA-AGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       304 ~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~~~--l~v~gg~~~~i~v~d~~~~  358 (387)
                      ..+.+.+||..+.+=  +...+.......++ .-+|+  +|+.++.++.+.+||..++
T Consensus       296 ~~~~v~~~d~~t~~~--~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         296 AAKEVTSVTGLVGQT--SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCCeEEEEECCCCcE--EEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            445788898877642  22222222233333 34665  5666667789999999965

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.37  E-value=3.9  Score=33.39  Aligned_cols=54  Identities=15%  Similarity=0.030  Sum_probs=30.7

Q ss_pred             CccEEEeCCCCceee-CCCCCCCceeeeEEee-C-CEEEEEecCCCCCCCCCCceEEEEeCCCCc
Q 044903          164 TRPLIFDPICRTWTF-GPELVTPRRWCAAGYS-R-GAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       164 ~~~~vydp~t~~W~~-l~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~  225 (387)
                      +.+.++|..+.+-.. ++.......-.+.+.. + ..+||+|+.+.        .+.+||..+++
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~--------~v~v~D~~t~~   67 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE--------SLVKIDLVTGE   67 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTT--------EEEEEETTTCC
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCC--------eEEEEECCCCc
Confidence            567888888775433 2211111211122222 3 45788765433        78999999988

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.21  E-value=3.2  Score=32.25  Aligned_cols=61  Identities=16%  Similarity=0.162  Sum_probs=38.5

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCcee-----ecc---ccccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTWD-----DMR---EGMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMDDW  318 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~-----~~~---~~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~~W  318 (387)
                      ++++|++-|  ...+.||..+++=.     .+.   .+++..  -.++...+|++|++-  ....++||..+.+-
T Consensus       116 ~~~~Y~FkG--~~y~ry~~~~~~vd~gyPk~I~~~w~Gvp~~--iDAAf~~~g~~YfFk--g~~y~r~~~~~~~v  184 (195)
T d1su3a2         116 TGKTYFFVA--NKYWRYDEYKRSMDPGYPKMIAHDFPGIGHK--VDAVFMKDGFFYFFH--GTRQYKFDPKTKRI  184 (195)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEECSSCSEEHHHHSTTSCSC--CSEEEEETTEEEEEE--TTEEEEEETTTTEE
T ss_pred             CCeEEEEeC--CEEEEEeccCccccCCcccccccccCCCCCC--ccEEEEECCeEEEEE--CCEEEEEeCCcCEE
Confidence            579999966  46788988765311     111   112222  234556689999995  45789999877643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.19  E-value=6.8  Score=35.89  Aligned_cols=115  Identities=20%  Similarity=0.292  Sum_probs=70.5

Q ss_pred             EEeCCEEEEEcCccCCCCCCCCccEEEeCCCC--ceeeCCCCCCC--------ceeeeEEeeCCEEEEEecCCCCCCCCC
Q 044903          143 VSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RRWCAAGYSRGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       143 ~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~--~W~~l~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~  212 (387)
                      ++.++.||+....        +.++.+|+.|.  .|+.-+..+..        ......+..++++|+...         
T Consensus        74 iv~~g~vyv~t~~--------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~---------  136 (573)
T d1kb0a2          74 VVVDGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------  136 (573)
T ss_dssp             EEETTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---------
T ss_pred             EEECCEEEEECCC--------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec---------
Confidence            4579999987542        46788898887  48764433211        112345566888887532         


Q ss_pred             CceEEEEeCCCCccccCeEEcC-CCCCCcccccceeEEEECCEEEEEeeeC-----CeEEEEECCCC--ceee
Q 044903          213 AKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVAN--TWDD  277 (387)
Q Consensus       213 ~~~v~vyd~~t~~~~~~W~~~~-~~~~~~~~~~~~~~v~~~g~lyv~gg~~-----~~i~~yD~~~~--~W~~  277 (387)
                      ...+..+|..+++..  |+.-. ........ .....+++++++|+-+...     ..+.+||..++  .|+.
T Consensus       137 ~g~l~alda~tG~~~--W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         137 DGRLIALDAATGKEV--WHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             TSEEEEEETTTCCEE--EEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ccceeeeccccccce--ecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            125788899998866  87643 22221111 1244577899987643211     57899999987  4763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.99  E-value=2.5  Score=39.04  Aligned_cols=120  Identities=11%  Similarity=0.094  Sum_probs=70.2

Q ss_pred             eEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC-CCccccCeEEcCCCCCCccc-----ccceeEEEECCEEEEEeeeCC
Q 044903          190 AAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDGRFS-----REAIDAVGWKGKLCLVNVKGA  263 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~-t~~~~~~W~~~~~~~~~~~~-----~~~~~~v~~~g~lyv~gg~~~  263 (387)
                      .-.+++++|||..+..        ..+...|.. |++..  |+.-+..+.....     ...-..+..+++||+... +.
T Consensus        57 tP~v~~g~vyv~t~~~--------~~v~Alda~~tG~~~--W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~-~g  125 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFP--------NNTYALNLNDPGKIV--WQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-NG  125 (571)
T ss_dssp             CCEEETTEEEEECSTT--------TCEEEEETTCTTSEE--EEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TS
T ss_pred             CCEEECCEEEEecCCC--------CeEEEEeCCCCCceE--EEecCCCCcccccccccCcCCCcceeeCCeEEEEeC-CC
Confidence            3467899999985432        246777864 56655  8764433221110     001224677899987643 24


Q ss_pred             eEEEEECCCC--ceeeccccccCC-CCCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCC--ceEE
Q 044903          264 EGAVYDVVAN--TWDDMREGMVRG-WRGPVAAMDEEVLYGIDE-----NSCTLSKYDEVMD--DWKE  320 (387)
Q Consensus       264 ~i~~yD~~~~--~W~~~~~~~~~~-~~~~~~~~~~g~ly~~g~-----~~~~v~~yd~~~~--~W~~  320 (387)
                      .+++.|.++.  .|+.--.....+ ....+.++.++++|+-..     ..+.|..||.++.  .|+.
T Consensus       126 ~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             cEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            7889999887  586532111111 112233566788887553     2567999998865  5764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.49  E-value=4.3  Score=32.58  Aligned_cols=131  Identities=11%  Similarity=0.011  Sum_probs=69.2

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCEEEEEeeeC-CeEEEEECCCCceeeccccccCCCCCcEEE-
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAA-  292 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-  292 (387)
                      .+..++..+..    +...-....      ...+...++..+++++.. ..+..|+.....-..... .+......+++ 
T Consensus       102 ~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~  170 (287)
T d1pgua2         102 DLLILQSFTGD----IIKSVRLNS------PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK-TPLRAKPSYISI  170 (287)
T ss_dssp             EEEEEETTTCC----EEEEEECSS------CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS-SCCSSCEEEEEE
T ss_pred             cceeeecccee----eeeeccccc------eeeeeeccCcceeeeccccceeeeeeccccceeeeee-eccCCceeEEEe
Confidence            45667777776    544332221      134455666666666655 568888875332111111 11111111222 


Q ss_pred             EeCCeEEEEeCCCCeEEEEeCCCCceEEccccccccCc------------eeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          293 MDEEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGA------------RHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       293 ~~~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~------------~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      ..++...+.+..++.|.+||..+..-.... .......            ......++.+++.|+.++.+.+||+.+
T Consensus       171 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         171 SPSETYIAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEECC-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             ccCccccccccccccccceeeccccccccc-ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            225566677777899999998765432211 1111111            112234567777877888999999874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=88.99  E-value=0.76  Score=38.34  Aligned_cols=64  Identities=13%  Similarity=0.028  Sum_probs=42.9

Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceEEccccccccCceeEEE-eCC-eEEEEecCCceEEEEEecCC
Q 044903          295 EEVLYGIDENSCTLSKYDEVMDDWKEVVKSDLLKGARHAAA-GGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~~-~l~v~gg~~~~i~v~d~~~~  358 (387)
                      +++.++++..++.|.+||+++++=......+.......++. -+| .+||.+..++.+.+||..+.
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence            56777777778899999999985443223333333333443 355 46777667888999998854

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.09  E-value=5.7  Score=32.25  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=85.8

Q ss_pred             eCCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCC--CCCCCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCC
Q 044903          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP--ELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~  222 (387)
                      .++.||+....       ...+.++++....-+.+.  .+..|+ ..+....++.+|..-....      ...++..++.
T Consensus        89 ~~~~lY~~d~~-------~~~I~~~~~dg~~~~~l~~~~l~~p~-~l~vdp~~g~ly~t~~~~~------~~~I~r~~~d  154 (263)
T d1npea_          89 LGRTIFWTDSQ-------LDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRD------NPKIETSHMD  154 (263)
T ss_dssp             TTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSS------SCEEEEEETT
T ss_pred             cCCeEEEeccC-------CCEEEEEecCCceEEEEecccccCCc-EEEEecccCcEEEeecCCC------CcEEEEecCC
Confidence            58899987542       246788887655433332  222332 1222234788887643211      1246666665


Q ss_pred             CCccccCeEEcCCCCCCcccccceeEEEE---CCEEEEEeeeCCeEEEEECCCCceeeccccccCCCCCcEEEEeCCeEE
Q 044903          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY  299 (387)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~~~~~~~v~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~g~ly  299 (387)
                      ...    -..+..-...     ...+..+   +++||+.......++.+|+....=+.+-.....+   ..+++.++.||
T Consensus       155 G~~----~~~i~~~~~~-----~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P---~~lav~~~~lY  222 (263)
T d1npea_         155 GTN----RRILAQDNLG-----LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP---FAVTSYGKNLY  222 (263)
T ss_dssp             SCC----CEEEECTTCS-----CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE---EEEEEETTEEE
T ss_pred             CCC----ceeeeeeccc-----ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCc---EEEEEECCEEE
Confidence            544    3333211111     1123333   5889999765578999998765444443322221   36778899999


Q ss_pred             EEeCCCCeEEEEeCCCCc
Q 044903          300 GIDENSCTLSKYDEVMDD  317 (387)
Q Consensus       300 ~~g~~~~~v~~yd~~~~~  317 (387)
                      +.+...+.|.+.|..+.+
T Consensus       223 wtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         223 YTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             EEETTTTEEEEEETTTTE
T ss_pred             EEECCCCEEEEEECCCCc
Confidence            999878899999998763

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=87.73  E-value=2.9  Score=34.36  Aligned_cols=105  Identities=15%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             EEEEEeeeCCeEEEEECCCC-ceeeccccccCCCCCcEEEEeC-CeEEEEeCCCCeEEEEeCCCCceEEcc--ccccccC
Q 044903          254 KLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMDE-EVLYGIDENSCTLSKYDEVMDDWKEVV--KSDLLKG  329 (387)
Q Consensus       254 ~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~~-g~ly~~g~~~~~v~~yd~~~~~W~~v~--~~~~~~~  329 (387)
                      .+||.+..+..|.+||+.++ ..+.+...-..+.-...+...+ ..||+.+..++.|.+|+.+.+.+....  ..+....
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            46777777788888887543 3443331011111111222334 468888777889999988777665422  2222222


Q ss_pred             ce-eEEEeCCe-EEEEecCCceEEEEEecCC
Q 044903          330 AR-HAAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       330 ~~-~~~~~~~~-l~v~gg~~~~i~v~d~~~~  358 (387)
                      .. ..+.-+|+ ||+.+..+..+.+++....
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccc
Confidence            22 23344554 5555445667777766633

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.20  E-value=6.2  Score=31.73  Aligned_cols=196  Identities=11%  Similarity=-0.025  Sum_probs=92.3

Q ss_pred             CCEEEEEcCccCCCCCCCCccEEEeCCCCceeeCCCCC-CCceeeeEEeeCCEEEEEecCCCCCCCCCCceEEEEeCCCC
Q 044903          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGYSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~l~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~vyd~~t~  224 (387)
                      ++.+++.|+.+       ..+.+++..+.......... ...........++...+.++.+.        .+.++|..+.
T Consensus        68 ~~~~l~sg~~d-------~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~wd~~~~  132 (342)
T d1yfqa_          68 TDLQIYVGTVQ-------GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG--------LIEVIDPRNY  132 (342)
T ss_dssp             SSEEEEEEETT-------SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS--------EEEEECHHHH
T ss_pred             CCCEEEEcccc-------cceeeeeccccccccccccccccccccccccccccccccccccc--------ccceeecccc
Confidence            35566666532       35678888766554433222 22222333344555555555433        4566665432


Q ss_pred             ccccCeEEcCCCCCCccc-ccceeEEEECCEEEEEeeeCCeEEEEECCCCceeecc-ccccCCCCCcEEE--EeCCeEEE
Q 044903          225 EKNSRWEKTGELKDGRFS-REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMR-EGMVRGWRGPVAA--MDEEVLYG  300 (387)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~-~~~~~~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~--~~~g~ly~  300 (387)
                      ...  ............. .........++...+.+.....+..||.....-.... .............  ..++..++
T Consensus       133 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (342)
T d1yfqa_         133 GDG--VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             TTB--CEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             ccc--eeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEE
Confidence            211  2222211111100 1112234445666666666678899998654322111 1011111111111  12345666


Q ss_pred             EeCCCCeEEEEeCCCC--ceEEccc--------ccc---ccCce-e-EEEeCCeEEEEecCCceEEEEEecCC
Q 044903          301 IDENSCTLSKYDEVMD--DWKEVVK--------SDL---LKGAR-H-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~g~~~~~v~~yd~~~~--~W~~v~~--------~~~---~~~~~-~-~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                      .+..++.+.+|+....  .+.....        ...   ..... + ...-++++++.|+.++.|.+||..+.
T Consensus       211 ~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence            6667788777765432  1111100        000   11111 1 22336788888888899999999854

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=87.00  E-value=3.3  Score=33.96  Aligned_cols=149  Identities=13%  Similarity=0.014  Sum_probs=71.1

Q ss_pred             CEEEEEecCCCCCCCCCCceEEEEeCCCCccccCeEEcCCCCCCcccccceeEEEECCE-EEEEeeeCCeEEEEECCCCc
Q 044903          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~vyd~~t~~~~~~W~~~~~~~~~~~~~~~~~~v~~~g~-lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ..+||.+..+.        .+.+||..++.   ..+.+.....+...  ..-+..-||+ ||+.+.....+.+|+...+.
T Consensus         4 ~~v~v~~~~~~--------~I~v~~~~~~~---~l~~~~~~~~~~~v--~~la~spDG~~L~v~~~~d~~i~~~~i~~~~   70 (333)
T d1ri6a_           4 QTVYIASPESQ--------QIHVWNLNHEG---ALTLTQVVDVPGQV--QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   70 (333)
T ss_dssp             EEEEEEEGGGT--------EEEEEEECTTS---CEEEEEEEECSSCC--CCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eEEEEECCCCC--------cEEEEEEcCCC---CeEEEEEEcCCCCE--eEEEEeCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            35788876543        67777765442   03333211111110  0122333554 66665545788999887776


Q ss_pred             eeeccc-cccCCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceEEcccc-ccccCce-eEEEeCCe-EEEEecCCc
Q 044903          275 WDDMRE-GMVRGWRGPVAAMD--EEVLYGIDENSCTLSKYDEVMDDWKEVVKS-DLLKGAR-HAAAGGGR-VCAVCENGG  348 (387)
Q Consensus       275 W~~~~~-~~~~~~~~~~~~~~--~g~ly~~g~~~~~v~~yd~~~~~W~~v~~~-~~~~~~~-~~~~~~~~-l~v~gg~~~  348 (387)
                      +..... ....+.....+++.  |..||+.+...+.+..|+.+...-...... ......+ ..+..+++ +++....+.
T Consensus        71 ~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          71 GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD  150 (333)
T ss_dssp             CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             CcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence            653221 11122212233332  345777766677888888766543332221 1111112 22233333 333333345


Q ss_pred             eEEEEEecC
Q 044903          349 GIVVVDVKA  357 (387)
Q Consensus       349 ~i~v~d~~~  357 (387)
                      .+.+++...
T Consensus       151 ~i~~~~~~~  159 (333)
T d1ri6a_         151 RICLFTVSD  159 (333)
T ss_dssp             EEEEEEECT
T ss_pred             eeeEEEecc
Confidence            566666553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.96  E-value=6.9  Score=36.10  Aligned_cols=119  Identities=11%  Similarity=-0.006  Sum_probs=67.7

Q ss_pred             eeEEEECCEEEEEeeeCCeEEEEEC-CCC--ceeecccccc-------CCCCCcEEEEeCCe-----EEEEeCCCCeEEE
Q 044903          246 IDAVGWKGKLCLVNVKGAEGAVYDV-VAN--TWDDMREGMV-------RGWRGPVAAMDEEV-----LYGIDENSCTLSK  310 (387)
Q Consensus       246 ~~~v~~~g~lyv~gg~~~~i~~yD~-~~~--~W~~~~~~~~-------~~~~~~~~~~~~g~-----ly~~g~~~~~v~~  310 (387)
                      ..-++++|.||+.+.....++++|. +++  .|+.-+....       .......++...+.     ..+++..++.|+.
T Consensus        56 ~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~A  135 (596)
T d1w6sa_          56 GAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAA  135 (596)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEE
T ss_pred             eCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEe
Confidence            3456889999998765567888885 443  6885432111       00111122333221     2334445788999


Q ss_pred             EeCCCC--ceEEcccc--ccccCceeEEEeCCeEEEEecC-----CceEEEEEecCCCCCceeEE
Q 044903          311 YDEVMD--DWKEVVKS--DLLKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       311 yd~~~~--~W~~v~~~--~~~~~~~~~~~~~~~l~v~gg~-----~~~i~v~d~~~~~~~~~W~~  366 (387)
                      .|.++.  .|+.-...  .......+-+.++++|+|-...     .+.+..||..++  ...|+.
T Consensus       136 lda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG--~~~W~~  198 (596)
T d1w6sa_         136 LNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTG--EQVWRA  198 (596)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTC--CEEEEE
T ss_pred             eccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCC--cEEEEe
Confidence            998875  46542211  1112233456778887774322     367899999843  467987

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.87  E-value=14  Score=33.66  Aligned_cols=120  Identities=13%  Similarity=0.136  Sum_probs=69.2

Q ss_pred             eeEEEECCEEEEEeeeCCeEEEEECCCC--ceeeccc---cccC--CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--
Q 044903          246 IDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMRE---GMVR--GWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD--  316 (387)
Q Consensus       246 ~~~v~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~---~~~~--~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~--  316 (387)
                      ..-++.+|.||+.... ..++++|.+++  .|+.-..   ....  ......+++.++++|+.. .++.++..|.++.  
T Consensus        62 stPiv~~g~vy~~t~~-~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t-~~~~l~alda~tG~~  139 (582)
T d1flga_          62 SQAIVSDGVIYVTASY-SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-LDASVVALNKNTGKV  139 (582)
T ss_dssp             CCCEEETTEEEEEETT-TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-TTTEEEEEESSSCCE
T ss_pred             cCCEEECCEEEEeCCC-CeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEec-CCCeEEEecccccce
Confidence            3457889999987654 47899999876  6874321   1111  111234556788888764 4678999999877  


Q ss_pred             ceEEcc-cccc---ccCceeEEE--eCCeEEEEecC-------CceEEEEEecCCCCCceeEEcCC
Q 044903          317 DWKEVV-KSDL---LKGARHAAA--GGGRVCAVCEN-------GGGIVVVDVKAAAAPTIFVVDTP  369 (387)
Q Consensus       317 ~W~~v~-~~~~---~~~~~~~~~--~~~~l~v~gg~-------~~~i~v~d~~~~~~~~~W~~~~~  369 (387)
                      .|+.-. ....   ....-.++.  ..+.+.++.+.       ...+..+|..++  ...|+....
T Consensus       140 ~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG--~~~W~~~~~  203 (582)
T d1flga_         140 VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG--EEIWMRPFV  203 (582)
T ss_dssp             EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC--CEEEEEESS
T ss_pred             eeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCC--cEEEEEecc
Confidence            686532 2111   111111221  12344444432       245788888743  467887433

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.71  E-value=4.2  Score=34.76  Aligned_cols=104  Identities=10%  Similarity=0.008  Sum_probs=58.7

Q ss_pred             EEEEeeeCCeEEEEECCCCceeec-cc-cccCCCCCc--EEEE-eCCeEEEEeCCCC---eEEEEeCCCCceEEcccc--
Q 044903          255 LCLVNVKGAEGAVYDVVANTWDDM-RE-GMVRGWRGP--VAAM-DEEVLYGIDENSC---TLSKYDEVMDDWKEVVKS--  324 (387)
Q Consensus       255 lyv~gg~~~~i~~yD~~~~~W~~~-~~-~~~~~~~~~--~~~~-~~g~ly~~g~~~~---~v~~yd~~~~~W~~v~~~--  324 (387)
                      +.+.|+.+..+.+||+.+.+.... .. ....+...+  +++. .++++.+.++.++   .+.+||.++.........  
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            444555567899999987754321 11 011111111  2222 2567777765444   488999987755432211  


Q ss_pred             ------cc---ccCce--eEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          325 ------DL---LKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ------~~---~~~~~--~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                            ..   +....  .++..++++++.|+.++.|.+||+.++
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence                  01   11222  223347889999888999999998854

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=83.55  E-value=5.7  Score=30.65  Aligned_cols=92  Identities=15%  Similarity=0.142  Sum_probs=51.9

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCce---eeccc---cccCCCCCcEEEE------eCCeEEEEeCCCCeEEEEeCCCCc--
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTW---DDMRE---GMVRGWRGPVAAM------DEEVLYGIDENSCTLSKYDEVMDD--  317 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W---~~~~~---~~~~~~~~~~~~~------~~g~ly~~g~~~~~v~~yd~~~~~--  317 (387)
                      +|++|++.|  ...++|+-.+...   +.+..   +++..  -.++..      .++++|++.+  +..+.||..+..  
T Consensus        59 ~~~~yfFkG--~~yw~y~~~~~~~gyPk~i~~~~~glp~~--iDAA~~~~~~~~~~~~~yfFkg--~~yw~yd~~~~~~~  132 (192)
T d1qhua1          59 HTSVYLIKG--DKVWVYTSEKNEKVYPKSLQDEFPGIPFP--LDAAVECHRGECQDEGILFFQG--NRKWFWDLTTGTKK  132 (192)
T ss_dssp             TTEEEEEET--TEEEEECC-------CEEHHHHSTTCCSS--CCEEEEECBBTBSSSEEEEEET--TEEEEEETTTTEEE
T ss_pred             CCcEEEEeC--CEEEEEeCCccccCCCcChHHhCCCCCCC--ceEEEEccccccCCCeEEEEeC--CeEEEEeCCCCCcc
Confidence            578998865  3677786433222   11111   12211  112222      2688999964  478999987762  


Q ss_pred             ---eEEccccccccCceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          318 ---WKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       318 ---W~~v~~~~~~~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                         |..+   |   ...+++..+|++|++  .|...+.||...
T Consensus       133 ~~~w~gi---p---~~daA~~~~g~~YfF--kg~~y~r~~~~~  167 (192)
T d1qhua1         133 ERSWPAV---G---NCTSALRWLGRYYCF--QGNQFLRFNPVS  167 (192)
T ss_dssp             EECCTTS---C---CCSEEEEETTEEEEE--ETTEEEEECTTT
T ss_pred             cccccCc---C---CcceeEEeCCcEEEE--ECCEEEEEcCCc
Confidence               3222   2   123455679999999  466777777663

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.31  E-value=8.3  Score=29.75  Aligned_cols=143  Identities=13%  Similarity=0.023  Sum_probs=73.5

Q ss_pred             EEEeCCEEEEEcCccCCCCCCCCccEEEeCCCCceee--------CCCCCCCceeeeEEeeCCEEEEEecCCCCCCCCCC
Q 044903          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTF--------GPELVTPRRWCAAGYSRGAVYVASGIGSQFSSDVA  213 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vydp~t~~W~~--------l~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  213 (387)
                      ++.++|.+|++-|         ..+|+++........        -+.+|.....+-....++++|++-|.         
T Consensus        12 v~~~~G~~y~Fkg---------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~IDAAf~~~~~~k~yfFkg~---------   73 (195)
T d1itva_          12 IAEIGNQLYLFKD---------GKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGR---------   73 (195)
T ss_dssp             EEEETTEEEEEET---------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSCSEEEECTTTCCEEEEETT---------
T ss_pred             EEEeCCEEEEEEC---------CEEEEEeCCCCCcCCCcEEeeeecCCCCCCccEEEEECCCCEEEEEecC---------
Confidence            3457899999987         345666543222111        12333222111111235788888653         


Q ss_pred             ceEEEEeCCCCccccCe-EEcCC--CCCCcccccceeEEEE--CCEEEEEeeeCCeEEEEECCCCceee-----cc---c
Q 044903          214 KSVEKWDLMNGEKNSRW-EKTGE--LKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDD-----MR---E  280 (387)
Q Consensus       214 ~~v~vyd~~t~~~~~~W-~~~~~--~~~~~~~~~~~~~v~~--~g~lyv~gg~~~~i~~yD~~~~~W~~-----~~---~  280 (387)
                       .+++|+-.+-.    . +.+..  +|...   ....++..  +|++|++-|  ...+.||..+++=..     +.   .
T Consensus        74 -~~~~y~~~~~~----~Pk~i~~~g~p~~~---~~idaa~~~~~g~~Y~FkG--~~y~ryd~~~~~v~~gyPk~i~~~w~  143 (195)
T d1itva_          74 -QVWVYTGASVL----GPRRLDKLGLGADV---AQVTGALRSGRGKMLLFSG--RRLWRFDVKAQMVDPRSASEVDRMFP  143 (195)
T ss_dssp             -EEEEEETTEEE----EEEEGGGGTCCTTC---CCCCEEEECSTTEEEEEET--TEEEEEETTTTEECGGGCEEHHHHST
T ss_pred             -EEEEEcCcccc----CCEEhhhcCCCCCc---hheeeEEEcCCCeEEEEec--cEEEEEeCCcccccCCCccchhhhcC
Confidence             34666532211    1 12222  22211   11233333  589999955  468999987663221     11   1


Q ss_pred             cccCCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 044903          281 GMVRGWRGPVAAMDEEVLYGIDENSCTLSKYDEVMD  316 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~g~ly~~g~~~~~v~~yd~~~~  316 (387)
                      +++..  -.++....+.+|++-  ....++||..+.
T Consensus       144 gvp~~--idaAf~~~~~~Yffk--g~~y~r~~~~~~  175 (195)
T d1itva_         144 GVPLD--THDVFQFREKAYFCQ--DRFYWRVSSRSE  175 (195)
T ss_dssp             TSCSS--CSEEEEETTEEEEEE--TTEEEEEECCTT
T ss_pred             CCCCC--CcEEEEeCCcEEEEE--CCEEEEEcCCce
Confidence            22222  335556688999995  457888987554

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=9.5  Score=29.26  Aligned_cols=100  Identities=9%  Similarity=-0.003  Sum_probs=53.9

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCce---eeccc-cccCCCCCc-EEEE--eCCeEEEEeCCCCeEEEEeCCCCceE-----
Q 044903          252 KGKLCLVNVKGAEGAVYDVVANTW---DDMRE-GMVRGWRGP-VAAM--DEEVLYGIDENSCTLSKYDEVMDDWK-----  319 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W---~~~~~-~~~~~~~~~-~~~~--~~g~ly~~g~~~~~v~~yd~~~~~W~-----  319 (387)
                      ++++|++-|  ...++|+..+...   +.+.. .++...... ++..  .++++|++.  .+..++||..++.=.     
T Consensus        64 ~~~~yffkg--~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fk--g~~y~~y~~~~~~~~~~~pk  139 (192)
T d1pexa_          64 HDLIFIFRG--RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFS--GNQVWRYDDTNHIMDKDYPR  139 (192)
T ss_dssp             TTEEEEEET--TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEE--TTEEEEEETTTTEECSSCCC
T ss_pred             CCEEEEEcC--CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEe--CCEEEEEcCccccccCCCcE
Confidence            688998755  3678887543322   12211 111111122 2333  257899995  457899998765311     


Q ss_pred             Eccc-cccc-cCceeEEEeCCeEEEEecCCceEEEEEecC
Q 044903          320 EVVK-SDLL-KGARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       320 ~v~~-~~~~-~~~~~~~~~~~~l~v~gg~~~~i~v~d~~~  357 (387)
                      .+.. -+.. ..--++...+|++|++  .+.+.+.||...
T Consensus       140 ~I~~~w~gvp~~vdAa~~~~g~~YfF--~g~~y~r~~~~~  177 (192)
T d1pexa_         140 LIEEDFPGIGDKVDAVYEKNGYIYFF--NGPIQFEYSIWS  177 (192)
T ss_dssp             BHHHHSTTSCSCCSEEEEETTEEEEE--ETTEEEEEETTT
T ss_pred             EHhhcCCCCCCCceEEEEeCCEEEEE--ECCEEEEEeCCc
Confidence            1111 0111 1122444679999999  466777777664

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.49  E-value=8.6  Score=29.64  Aligned_cols=103  Identities=13%  Similarity=0.009  Sum_probs=54.2

Q ss_pred             EEEECCEEEEEeeeCCeEEEEECCCCceeecc-------ccccCCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCce
Q 044903          248 AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMR-------EGMVRGWRGPVAAM--DEEVLYGIDENSCTLSKYDEVMDDW  318 (387)
Q Consensus       248 ~v~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~-------~~~~~~~~~~~~~~--~~g~ly~~g~~~~~v~~yd~~~~~W  318 (387)
                      .+.++|.+|++-|  ...+.|+........-+       ++++..  --++..  .++++|++-  .+.+++|+-.+-.-
T Consensus        12 v~~~~G~~y~Fkg--~~ywr~~~~~~~~~~~P~~I~~~w~glp~~--IDAAf~~~~~~k~yfFk--g~~~~~y~~~~~~~   85 (195)
T d1itva_          12 IAEIGNQLYLFKD--GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFS--GRQVWVYTGASVLG   85 (195)
T ss_dssp             EEEETTEEEEEET--TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEE--TTEEEEEETTEEEE
T ss_pred             EEEeCCEEEEEEC--CEEEEEeCCCCCcCCCcEEeeeecCCCCCC--ccEEEEECCCCEEEEEe--cCEEEEEcCccccC
Confidence            3467999999954  35566765433322111       112221  123322  257899995  45788887432111


Q ss_pred             -EEcccc--ccc-cC-ceeEEEeCCeEEEEecCCceEEEEEecCC
Q 044903          319 -KEVVKS--DLL-KG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       319 -~~v~~~--~~~-~~-~~~~~~~~~~l~v~gg~~~~i~v~d~~~~  358 (387)
                       +.+...  |.. .. ..+....+|++|++  .|...+.||..+.
T Consensus        86 Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~F--kG~~y~ryd~~~~  128 (195)
T d1itva_          86 PRRLDKLGLGADVAQVTGALRSGRGKMLLF--SGRRLWRFDVKAQ  128 (195)
T ss_dssp             EEEGGGGTCCTTCCCCCEEEECSTTEEEEE--ETTEEEEEETTTT
T ss_pred             CEEhhhcCCCCCchheeeEEEcCCCeEEEE--eccEEEEEeCCcc
Confidence             122221  111 11 23333446899999  4667888888744

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.52  E-value=12  Score=31.56  Aligned_cols=102  Identities=11%  Similarity=-0.037  Sum_probs=54.5

Q ss_pred             eEEEEeCCCCccccCeEEcCCCCCCc-ccccceeEEEE--CCEEEEEeeeC---CeEEEEECCCCceeec-c---c--cc
Q 044903          215 SVEKWDLMNGEKNSRWEKTGELKDGR-FSREAIDAVGW--KGKLCLVNVKG---AEGAVYDVVANTWDDM-R---E--GM  282 (387)
Q Consensus       215 ~v~vyd~~t~~~~~~W~~~~~~~~~~-~~~~~~~~v~~--~g~lyv~gg~~---~~i~~yD~~~~~W~~~-~---~--~~  282 (387)
                      .+.+||..+.+    ....-...... .......++.+  +|++.+.|+.+   ..+.+||+++.+.... .   .  ..
T Consensus       206 ~i~iwd~~~~~----~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~  281 (393)
T d1sq9a_         206 TVQISELSTLR----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA  281 (393)
T ss_dssp             EEEEEETTTTE----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred             cEEEEeecccc----cccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccc
Confidence            68899998876    32211111000 00011223333  67777777655   2478899987654321 1   0  00


Q ss_pred             ---cCCCCCc--EEE-EeCCeEEEEeCCCCeEEEEeCCCCceEE
Q 044903          283 ---VRGWRGP--VAA-MDEEVLYGIDENSCTLSKYDEVMDDWKE  320 (387)
Q Consensus       283 ---~~~~~~~--~~~-~~~g~ly~~g~~~~~v~~yd~~~~~W~~  320 (387)
                         ..+....  +++ ..++++.+-++.++.|.+||.++.+...
T Consensus       282 ~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         282 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence               1111111  122 2256777778889999999999886554