Citrus Sinensis ID: 044925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MRVQYMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD
Secondary Structure (PSIPRED)
ccEEEEEEEEEEccccccccccEEEEEEcccHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcEEEEEccccccccccEEEEEEcccHHHHHHHHHHHHHcccHHHEEEcccccccccccccccccccccccccccHHHHcHHHHHHcccccHHHcccc
Coil and Loop (DISEMBL)
MRVQYMDTVqifwphntidsglvefsfftsqPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAapavassglGGAALAAAVEEKkeetkeesdddmglslfd
Flexible Loop (DISEMBL)
MRVQYMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEekkeetkeesdddmglslfd
Low Complexity Region (SEG)
MRVQYMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGsggahlavaapavassglggaalaaaveekkeetkeeSDDDMGLSLFD
Disordered region (IsUnstruct)
***QYMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLG*****************************
Disordered Region (DISOPRED)
****YMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAH************************************MGLSLFD
Disordered Region (DISEMBL)
MRVQYMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGA***************************
Disordered Region (DISPRO)
*RVQYMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGS*******************************************SLFD
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVQYMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
15238555	111	large subunit ribosomal protein LP1 [Ara	0.592	0.549	0.432	0.0007

>gi|15238555|ref|NP_197839.1| large subunit ribosomal protein LP1 [Arabidopsis thaliana] gi|10177851|dbj|BAB11203.1| 60s acidic ribosomal protein P1 [Arabidopsis thaliana] gi|67633816|gb|AAY78832.1| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana] gi|332005935|gb|AED93318.1| large subunit ribosomal protein LP1 [Arabidopsis thaliana]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 6/67 (8%)

Query: 40  KLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEE---TKEESDDD 96
           KL EK++ D+L +NVG+GG    VA P   ++     +++   EEKK E    KEES+DD
Sbjct: 48  KLCEKKNIDDLIMNVGAGGC--GVARPVTTAAPTASQSVSIP-EEKKNEMEVIKEESEDD 104

Query: 97  MGLSLFD 103
           M + LFD
Sbjct: 105 MIIGLFD 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
cd05831	103	cd05831, Ribosomal_P1, Ribosomal protein P1	3e-15
cd05833	109	cd05833, Ribosomal_P2, Ribosomal protein P2	6e-12
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	9e-12
PLN00138	113	PLN00138, PLN00138, large subunit ribosomal protei	1e-08
COG2058	109	COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP	7e-08
cd04411	105	cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P	1e-07
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	2e-05
PTZ00373	112	PTZ00373, PTZ00373, 60S Acidic ribosomal protein P	6e-05

>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1

 Score = 65.0 bits (159), Expect = 3e-15
 Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 40  KLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGL 99
           K  E +   +L  NVG GG     AAPA A++    AA  A  EEKKEE +EESDDDMG 
Sbjct: 44  KALEGKDIKDLLSNVGGGGG---GAAPAAAAAAAAAAAAEAKKEEKKEEEEEESDDDMGF 100

Query: 100 SLF 102
            LF
Sbjct: 101 GLF 103

This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and P2B, which form P1A/P2B and P1B/P2A heterodimers. Some plant species have a third P-protein, called P3, which is not homologous to P1 and P2. In humans, P1 and P2 are strongly autoimmunogenic. They play a significant role in the etiology and pathogenesis of systemic lupus erythema (SLE). In addition, the ribosome-inactivating protein trichosanthin (TCS) interacts with human P0, P1, and P2, with its primary binding site located in the C-terminal region of P2. TCS inactivates the ribosome by depurinating a specific adenine in the sarcin-ricin loop of 28S rRNA. Length = 103

>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2

 Score = 56.5 bits (137), Expect = 6e-12
 Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 10/77 (12%)

Query: 33  EKIATLIKLFEKRSADEL------YLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKK 86
           EK+  +I   E +  +EL       L     GA    AAPA A++    AA AA  EEKK
Sbjct: 37  EKLNKVISELEGKDVEELIAAGKEKLASVPAGA--GGAAPAAAAAA--AAAAAAKKEEKK 92

Query: 87  EETKEESDDDMGLSLFD 103
           EE++EESDDDMG  LFD
Sbjct: 93  EESEEESDDDMGFGLFD 109

This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and P2B, which form P1A/P2B and P1B/P2A heterodimers. Some plants have a third P-protein, called P3, which is not homologous to P1 and P2. In humans, P1 and P2 are strongly autoimmunogenic. They play a significant role in the etiology and pathogenesis of systemic lupus erythema (SLE). In addition, the ribosome-inactivating protein trichosanthin (TCS) interacts with human P0, P1, and P2, with its primary binding site in the C-terminal region of P2. TCS inactivates the ribosome by depurinating a specific adenine in the sarcin-ricin loop of 28S rRNA. Length = 109

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 55.7 bits (135), Expect = 9e-12
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 22  LVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAA 81
           +++ +    + E++  L+K  E ++  EL  N  +  +  A AA A A++    AA AA 
Sbjct: 10  VLKAAGKEVEAERLELLVKFLEGKNIKELIANGSAKLS--AAAAAAAAAAAAAAAAAAAE 67

Query: 82  VEEKKEETKEESDDDMGLSLF 102
            E+K+EE +EE DDDMG  LF
Sbjct: 68  EEKKEEEEEEEEDDDMGFGLF 88

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|165706 PLN00138, PLN00138, large subunit ribosomal protein LP2; Provisional

 Score = 48.1 bits (114), Expect = 1e-08
 Identities = 31/58 (53%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 46  SADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD 103
           S  E   +V SGG  +AVAA A  ++G   A  A A +E+K E KEESDDDMG SLFD
Sbjct: 57  SGREKLASVPSGGG-VAVAAAAAPAAGGAAAPAAEAKKEEKVEEKEESDDDMGFSLFD 113

Length = 113

>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

 Score = 46.2 bits (110), Expect = 7e-08
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 32  PEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAA---LAAAVEEKKEE 88
             +   L+   E    DE+  N     A  A A  A A++    AA     A  EEK+EE
Sbjct: 35  EARAKALVAALEGVDIDEVIKNAAEAPAAAAAAGAAAAAAAGAEAAAEADEAEEEEKEEE 94

Query: 89  TKEESDDDMGLSLFD 103
            +EESDDDM   LF 
Sbjct: 95  AEEESDDDMLFGLFG 109

Length = 109

>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 23/72 (31%), Positives = 35/72 (48%)

Query: 31  QPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETK 90
           +PE++   +     ++ DE+        +  A AA A A++    A  A   EE KEE +
Sbjct: 34  EPERVKLFLSALNGKNIDEVISKGKELMSSQAAAAAAPAATAAATAEPAEKAEEAKEEEE 93

Query: 91  EESDDDMGLSLF 102
           EE D+D G  LF
Sbjct: 94  EEEDEDFGFGLF 105

Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have two copies each of P1 and P2 (two heterodimers). Bacteria may have four or six copies (two or three homodimers), depending on the species. As in bacteria, the stalk is crucial for binding of initiation, elongation, and release factors in eukaryotes and archaea. Length = 105

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 62  AVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD 103
           A AA A A+     AA AAA    +EE  EE +DDMG  LFD
Sbjct: 275 AAAAAAAAA----AAAAAAAAAPAEEE--EEEEDDMGFGLFD 310

Length = 310

>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 53  NVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD 103
           N+G G A  A  A   A++G      A A +E+K+E +EE +DD+G SLF 
Sbjct: 66  NIGGGVAAAAAPAAGAATAGAK----AEAKKEEKKEEEEEEEDDLGFSLFG 112

Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG3449	112	consensus 60S acidic ribosomal protein P2 [Transla	99.93
PTZ00373	112	60S Acidic ribosomal protein P2; Provisional	99.92
PLN00138	113	large subunit ribosomal protein LP2; Provisional	99.91
cd05833	109	Ribosomal_P2 Ribosomal protein P2. This subfamily	99.91
cd04411	105	Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and	99.91
cd05831	103	Ribosomal_P1 Ribosomal protein P1. This subfamily	99.88
COG2058	109	RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Tr	99.84
PF00428	88	Ribosomal_60s: 60s Acidic ribosomal protein; Inter	99.8
KOG1762	114	consensus 60s acidic ribosomal protein P1 [Transla	99.8
PRK06402	106	rpl12p 50S ribosomal protein L12P; Reviewed	99.69
cd05832	106	Ribosomal_L12p Ribosomal protein L12p. This subfam	99.45
TIGR03685	105	L21P_arch 50S ribosomal protein L12P. This model r	99.44
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	98.56
PTZ00240	323	60S ribosomal protein P0; Provisional	97.87
cd04411	105	Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and	97.19
COG2058	109	RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Tr	97.15
PRK06402	106	rpl12p 50S ribosomal protein L12P; Reviewed	97.11
KOG3449	112	consensus 60S acidic ribosomal protein P2 [Transla	96.89
cd05831	103	Ribosomal_P1 Ribosomal protein P1. This subfamily	96.65
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	96.55
TIGR03685	105	L21P_arch 50S ribosomal protein L12P. This model r	96.41
cd05832	106	Ribosomal_L12p Ribosomal protein L12p. This subfam	96.11
cd05833	109	Ribosomal_P2 Ribosomal protein P2. This subfamily	94.79
PLN00138	113	large subunit ribosomal protein LP2; Provisional	91.14
PTZ00373	112	60S Acidic ribosomal protein P2; Provisional	89.86
PTZ00240	323	60S ribosomal protein P0; Provisional	84.47

>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=1.4e-26  Score=162.08  Aligned_cols=89  Identities=45%  Similarity=0.545  Sum_probs=66.2

Q ss_pred             cCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhh-------hcCCCCcccccccccccccCCCCccchhhhhh
Q 044925           12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYL-------NVGSGGAHLAVAAPAVASSGLGGAALAAAVEE   84 (103)
Q Consensus        12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa-------~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee   84 (103)
                      .-+..||++||.+|| +++|.++|+.||+.|+||+|.|||+       ++++||+++++++++++  ++++++....+++
T Consensus        17 ~psa~DikkIl~sVG-~E~d~e~i~~visel~GK~i~ElIA~G~eklAsvpsGGa~~aaa~~aag--gaa~aa~~a~~~e   93 (112)
T KOG3449|consen   17 SPSASDIKKILESVG-AEIDDERINLVLSELKGKDIEELIAAGREKLASVPSGGAVAAAAAPAAG--GAAGAAPAAAKEE   93 (112)
T ss_pred             CCCHHHHHHHHHHhC-cccCHHHHHHHHHHhcCCCHHHHHHHhHHHHhcCCCCCccccccCcCCC--CCccCCccchhhh
Confidence            567899999999999 9999999999999999999999995       68877764322221111  1111222223455


Q ss_pred             hhcccccccccCCCCCCCC
Q 044925           85 KKEETKEESDDDMGLSLFD  103 (103)
Q Consensus        85 ~keeeeEE~ddDmGFgLFD  103 (103)
                      +|+||+|||||||||+|||
T Consensus        94 ~keEe~eesddDmgf~lFd  112 (112)
T KOG3449|consen   94 EKEEEKEESDDDMGFGLFD  112 (112)
T ss_pred             hhhhhcccccccccccccC
Confidence            5666669999999999998

>PTZ00373 60S Acidic ribosomal protein P2; Provisional

Probab=99.92  E-value=4.1e-25  Score=155.09  Aligned_cols=87  Identities=31%  Similarity=0.448  Sum_probs=62.0

Q ss_pred             cCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhh-------hcCCCCcccccccccccccCCCCccchhhhhh
Q 044925           12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYL-------NVGSGGAHLAVAAPAVASSGLGGAALAAAVEE   84 (103)
Q Consensus        12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa-------~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee   84 (103)
                      .+|.+||++||+++| |+++.++++.|++.|+||+|++||+       ++  ||+++++++++++  ++++++.++++++
T Consensus        19 ~pTaddI~kIL~AaG-veVd~~~~~l~~~~L~GKdI~ELIa~G~~kl~sv--gg~~~aa~a~a~~--~~~~~~~~~~~~e   93 (112)
T PTZ00373         19 NPTKKEVKNVLSAVN-ADVEDDVLDNFFKSLEGKTPHELIAAGMKKLQNI--GGGVAAAAAPAAG--AATAGAKAEAKKE   93 (112)
T ss_pred             CCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcCCCHHHHHHHhHHHHhcc--cCccccccccccc--ccccccchhhhhh
Confidence            599999999999999 9999999999999999999999996       35  3322211111111  1112222233444


Q ss_pred             hhcccccccccCCCCCCCC
Q 044925           85 KKEETKEESDDDMGLSLFD  103 (103)
Q Consensus        85 ~keeeeEE~ddDmGFgLFD  103 (103)
                      +|+||+|||||||||||||
T Consensus        94 ~k~ee~ee~ddDmgf~LFd  112 (112)
T PTZ00373         94 EKKEEEEEEEDDLGFSLFG  112 (112)
T ss_pred             hcccccccccccccccccC
Confidence            4566777889999999998

>PLN00138 large subunit ribosomal protein LP2; Provisional

Probab=99.91  E-value=8.3e-25  Score=153.60  Aligned_cols=90  Identities=37%  Similarity=0.430  Sum_probs=64.5

Q ss_pred             cCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhh-------hcCCCCcccccccccccccCCCCccchhhhhh
Q 044925           12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYL-------NVGSGGAHLAVAAPAVASSGLGGAALAAAVEE   84 (103)
Q Consensus        12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa-------~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee   84 (103)
                      .+|.++|++||+++| ++++.++++.++++|+||+|++||+       ++++||+++++++++++ +++++++.++++++
T Consensus        17 ~pta~dI~~IL~AaG-vevd~~~~~~f~~~L~gK~i~eLIa~G~~kl~sv~~gg~aa~a~a~a~~-~~~~~~~~~~~~~e   94 (113)
T PLN00138         17 CPSAEDLKDILGSVG-ADADDDRIELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAAAPA-AGGAAAPAAEAKKE   94 (113)
T ss_pred             CCCHHHHHHHHHHcC-CcccHHHHHHHHHHHcCCCHHHHHHhchhccccCCCCCccccccccccc-cccccccccchhhh
Confidence            599999999999999 9999999999999999999999995       47776653332211111 00111112223334


Q ss_pred             hhcccccccccCCCCCCCC
Q 044925           85 KKEETKEESDDDMGLSLFD  103 (103)
Q Consensus        85 ~keeeeEE~ddDmGFgLFD  103 (103)
                      +|+|++||+||||||||||
T Consensus        95 ~k~e~eeE~ddDmGfgLFd  113 (113)
T PLN00138         95 EKVEEKEESDDDMGFSLFD  113 (113)
T ss_pred             hhccccccccccccccccC
Confidence            4456667889999999998

>cd05833 Ribosomal_P2 Ribosomal protein P2

Probab=99.91  E-value=1.1e-24  Score=151.96  Aligned_cols=92  Identities=34%  Similarity=0.351  Sum_probs=63.4

Q ss_pred             cc-cCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCC--CC-cccccccccccccCCCCccchhhhhhh
Q 044925           10 QI-FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGS--GG-AHLAVAAPAVASSGLGGAALAAAVEEK   85 (103)
Q Consensus        10 ~~-~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~a--gg-~a~~aaaa~aa~~~~~a~a~~~~~ee~   85 (103)
                      ++ .+|+++|++||+++| ++|+..++..+++.|+||+|++||++...  ++ +++++++++++ +++++++..++++++
T Consensus        14 g~~~pTa~dI~~IL~AaG-veVe~~~~~lf~~~L~GKdi~eLIa~g~~kl~s~~~~~~~aa~a~-~~~a~aa~~~~~e~k   91 (109)
T cd05833          14 GNASPSAADVKKILGSVG-VEVDDEKLNKVISELEGKDVEELIAAGKEKLASVPAGAGGAAPAA-AAAAAAAAAAKKEEK   91 (109)
T ss_pred             CCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcCCCHHHHHHHhHhhhcCCCcccccccccc-ccccccccchhhhhh
Confidence            44 899999999999999 99999999999999999999999986443  21 11111111111 011111112334455


Q ss_pred             hcccccccccCCCCCCCC
Q 044925           86 KEETKEESDDDMGLSLFD  103 (103)
Q Consensus        86 keeeeEE~ddDmGFgLFD  103 (103)
                      |+|++||+||||||||||
T Consensus        92 kee~eee~ddDmGf~LFd  109 (109)
T cd05833          92 KEESEEESDDDMGFGLFD  109 (109)
T ss_pred             ccCCccccccccCCCCCC
Confidence            556666679999999998

This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2

>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p

Probab=99.91  E-value=1.7e-24  Score=150.23  Aligned_cols=89  Identities=27%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             cccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCCC--C-cccccccccccccCCCCccchhhhhhhh
Q 044925           10 QIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSG--G-AHLAVAAPAVASSGLGGAALAAAVEEKK   86 (103)
Q Consensus        10 ~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~ag--g-~a~~aaaa~aa~~~~~a~a~~~~~ee~k   86 (103)
                      ++.+|.++|++||.++| ++|+.++++.++++|+|++|++||++....  + ++.+++++++   ++++++.+++++++|
T Consensus        14 g~~~ta~~I~~IL~aaG-veVe~~~~~~~~~aLaGk~V~eli~~g~~kl~~~~~~~~a~~~a---~~~~~~~~~~~~e~k   89 (105)
T cd04411          14 GKELTEDKIKELLSAAG-AEIEPERVKLFLSALNGKNIDEVISKGKELMSSQAAAAAAPAAT---AAATAEPAEKAEEAK   89 (105)
T ss_pred             CCCCCHHHHHHHHHHcC-CCcCHHHHHHHHHHHcCCCHHHHHHHHHhhccCCCCcccccccc---ccccccchhhhhhhh
Confidence            56699999999999999 999999999999999999999999865431  1 1111111111   111222223444555


Q ss_pred             cccccccccCCCCCCC
Q 044925           87 EETKEESDDDMGLSLF  102 (103)
Q Consensus        87 eeeeEE~ddDmGFgLF  102 (103)
                      +|++||||||||||||
T Consensus        90 ~ee~eE~dddmgf~LF  105 (105)
T cd04411          90 EEEEEEEDEDFGFGLF  105 (105)
T ss_pred             cccccccccccCcccC
Confidence            6677888999999999

Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain

>cd05831 Ribosomal_P1 Ribosomal protein P1

Probab=99.88  E-value=3.6e-23  Score=142.96  Aligned_cols=90  Identities=39%  Similarity=0.457  Sum_probs=67.2

Q ss_pred             cccccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCCCCcc-cccccccccccCCCCccchhhhhhhh
Q 044925            8 TVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAH-LAVAAPAVASSGLGGAALAAAVEEKK   86 (103)
Q Consensus         8 ~~~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~agg~a-~~aaaa~aa~~~~~a~a~~~~~ee~k   86 (103)
                      .-++.+|.++|++||+++| ++++..+++.+++.|+||+|++||++++++|++ +++++++ +   ++++..+++++++|
T Consensus        13 d~~~~~Tae~I~~ilkAaG-veve~~~~~~f~~~L~gk~i~elIa~~~~~~~~aap~a~~a-~---~~~~~~~~~~~~kk   87 (103)
T cd05831          13 DDGIEITADNINALLKAAG-VNVEPYWPGLFAKALEGKDIKDLLSNVGGGGGGAAPAAAAA-A---AAAAAAEAKKEEKK   87 (103)
T ss_pred             cCCCCCCHHHHHHHHHHcC-CcccHHHHHHHHHHHcCCCHHHHhhcccccccccccccccc-c---cccccccchhhhcc
Confidence            3478899999999999999 999999999999999999999999998765543 2222111 1   11111223345556


Q ss_pred             cccccccccCCCCCCC
Q 044925           87 EETKEESDDDMGLSLF  102 (103)
Q Consensus        87 eeeeEE~ddDmGFgLF  102 (103)
                      ++++||+|||||||||
T Consensus        88 ~e~eee~d~dmgfglF  103 (103)
T cd05831          88 EEEEEESDDDMGFGLF  103 (103)
T ss_pred             cccccccccccccccC
Confidence            6677778999999999

This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and

>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=2.2e-21  Score=135.53  Aligned_cols=97  Identities=31%  Similarity=0.338  Sum_probs=67.3

Q ss_pred             eecccccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCCCCcc-cccccccccccCCCCccc--hhhh
Q 044925            6 MDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAH-LAVAAPAVASSGLGGAAL--AAAV   82 (103)
Q Consensus         6 ~~~~~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~agg~a-~~aaaa~aa~~~~~a~a~--~~~~   82 (103)
                      +...++++|+++|+++|.++| |+|+..+++.|++.|+||||+++|.+....-++ +++++++++++++.+++.  .++.
T Consensus        10 L~~agkei~e~~l~~vl~aaG-veve~~r~k~lvaaLeg~~idE~i~~~~~~~~a~a~a~aaaa~~A~~~~a~~~~ea~e   88 (109)
T COG2058          10 LHLAGKEITEDNLKSVLEAAG-VEVEEARAKALVAALEGVDIDEVIKNAAEAPAAAAAAGAAAAAAAGAEAAAEADEAEE   88 (109)
T ss_pred             HHHccCcCCHHHHHHHHHHcC-CCccHHHHHHHHHHhcCCCHHHHHHHhcccccccCCcccccccccccccccchhhHHH
Confidence            356789999999999999999 999999999999999999999999876543211 111111110011111111  2223


Q ss_pred             hhhhcccccccccCCCCCCCC
Q 044925           83 EEKKEETKEESDDDMGLSLFD  103 (103)
Q Consensus        83 ee~keeeeEE~ddDmGFgLFD  103 (103)
                      ++++++.+||+++||||+|||
T Consensus        89 Ee~eEe~~EE~~~~~lf~LF~  109 (109)
T COG2058          89 EEKEEEAEEESDDDMLFGLFG  109 (109)
T ss_pred             HHhhhchhhcccccchhhccC
Confidence            334556678889999999998

>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.80  E-value=2.8e-21  Score=129.07  Aligned_cols=87  Identities=39%  Similarity=0.386  Sum_probs=57.6

Q ss_pred             cCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCCCCcccccccccccccCCCCccchhhhhhhhcccc-
Q 044925           12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETK-   90 (103)
Q Consensus        12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee~keeee-   90 (103)
                      .+|+++|.++|.++| +++++.++..++++|+|++|++||++.+.+++++++++++++   ++.++++++++++|++++ 
T Consensus         1 ~pT~~~i~~vl~aag-~~v~~~~~~~~~~~l~~~~i~~li~~~~~~~~~~aaa~aaa~---aa~~~a~a~~e~kkEeeee   76 (88)
T PF00428_consen    1 EPTAENIKKVLKAAG-VEVEAIWLELFAKALEGKDIKELIANGSAGMAAAAAAAAAAA---AAAAAAAAAEEEKKEEEEE   76 (88)
T ss_dssp             S-SCCCHHHHHHHHT-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTSSH---HHHHHHHHHSTTHHHHT--
T ss_pred             CCCHHHHHHHHHHhC-CchhHHHHHHHHHHHcCCcHHHHHhccccccccccccccccc---ccccccccchhcccccccc
Confidence            378999999999999 999999999999999999999999987765321111111100   011111222223333333 


Q ss_pred             cccccCCCCCCC
Q 044925           91 EESDDDMGLSLF  102 (103)
Q Consensus        91 EE~ddDmGFgLF  102 (103)
                      ||+|+|||||||
T Consensus        77 EEed~dmGf~LF   88 (88)
T PF00428_consen   77 EEEDDDMGFGLF   88 (88)
T ss_dssp             SS-SSSSSTTTT
T ss_pred             cccccccCcCCC
Confidence            688999999999

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.

>KOG1762 consensus 60s acidic ribosomal protein P1 [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=6.7e-20  Score=128.93  Aligned_cols=82  Identities=44%  Similarity=0.570  Sum_probs=57.4

Q ss_pred             hhhhcccccccHHHHHHHHH----------------HhcCCChHHHhhhcCCCCccccccccccc-ccCC-CCccchhhh
Q 044925           21 GLVEFSFFTSQPEKIATLIK----------------LFEKRSADELYLNVGSGGAHLAVAAPAVA-SSGL-GGAALAAAV   82 (103)
Q Consensus        21 ~l~~~g~vevdaekI~~li~----------------aL~gk~I~eLIa~v~agg~a~~aaaa~aa-~~~~-~a~a~~~~~   82 (103)
                      ||.--+ |+|+.+||++|+|                +|.+++|.+||+|+++||+++++..++++ ++++ +++++.+++
T Consensus        15 IL~d~~-i~it~dki~tl~kaa~v~ve~~Wp~lfakale~vni~~li~n~gag~~a~a~~~~~~~~aa~~~~aA~~~Ekk   93 (114)
T KOG1762|consen   15 ILHDDE-IEVTADKINTLTKAAGVNVEPYWPGLFAKALEGVNIKELICNVGAGGGALAAGAAAAGGAAAAGGAAAAEEKK   93 (114)
T ss_pred             hccccc-eeeehhhhhhHHHhccCcccccchhHHHHHhccCChHHHHHhcccCCccCCCccccccccccccccccchHHH
Confidence            344456 7777788877665                89999999999999987766544322211 1222 233345556


Q ss_pred             hhhhcccccccccCCCCCCCC
Q 044925           83 EEKKEETKEESDDDMGLSLFD  103 (103)
Q Consensus        83 ee~keeeeEE~ddDmGFgLFD  103 (103)
                      ++.|+|+.||+||||||||||
T Consensus        94 ~eak~EeseesddDmgfGLfd  114 (114)
T KOG1762|consen   94 EEAKKEESEESDDDMGFGLFD  114 (114)
T ss_pred             HHhhhhhhcccccccccCCCC
Confidence            667778889999999999998

>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed

Probab=99.69  E-value=2.7e-17  Score=114.68  Aligned_cols=47  Identities=9%  Similarity=0.099  Sum_probs=44.1

Q ss_pred             ccccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCC
Q 044925            9 VQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGS   56 (103)
Q Consensus         9 ~~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~a   56 (103)
                      -++.||+++|++||+++| ++|+..+++.|+++|+|+||++||.++++
T Consensus        13 ~g~~it~e~I~~IL~AAG-veVee~~~k~~v~aL~GkdIeElI~~a~~   59 (106)
T PRK06402         13 AGKEINEDNLKKVLEAAG-VEVDEARVKALVAALEDVNIEEAIKKAAA   59 (106)
T ss_pred             cCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcCCCHHHHHHhccc
Confidence            356999999999999999 99999999999999999999999988765

>cd05832 Ribosomal_L12p Ribosomal protein L12p

Probab=99.45  E-value=1e-13  Score=96.66  Aligned_cols=47  Identities=11%  Similarity=0.101  Sum_probs=44.3

Q ss_pred             ccccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCC
Q 044925            9 VQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGS   56 (103)
Q Consensus         9 ~~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~a   56 (103)
                      -++.||+++|++||+++| |+++..+++.|++.|+|++|+++|++++.
T Consensus        13 ~G~eITae~I~~IL~AAG-veVd~~~~~ala~aL~gkdIeElIa~~~~   59 (106)
T cd05832          13 AGKEINEENLKKVLEAAG-IEVDEARVKALVAALEEVNIDEAIKKAAV   59 (106)
T ss_pred             cCCCCCHHHHHHHHHHhC-CcccHHHHHHHHHHHcCCCHHHHHHhccc
Confidence            466999999999999999 99999999999999999999999998765

This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera

>TIGR03685 L21P_arch 50S ribosomal protein L12P

Probab=99.44  E-value=1.4e-13  Score=95.61  Aligned_cols=47  Identities=9%  Similarity=0.086  Sum_probs=43.7

Q ss_pred             ccccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCC
Q 044925            9 VQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGS   56 (103)
Q Consensus         9 ~~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~a   56 (103)
                      -++.+|.++|++||+++| |+++..+++.|++.|+|++|+++|.++.+
T Consensus        13 ~g~~iT~e~I~~IL~AAG-v~ve~~~~~~la~~L~gk~i~eli~~~~~   59 (105)
T TIGR03685        13 AGKEINEENLKAVLEAAG-VEVDEARVKALVAALEGVNIEEAIKKAAA   59 (105)
T ss_pred             cCCCCCHHHHHHHHHHhC-CcccHHHHHHHHHHHcCCCHHHHHHhhhc
Confidence            356999999999999999 99999999999999999999999987763

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=98.56  E-value=4.5e-08  Score=78.53  Aligned_cols=18  Identities=56%  Similarity=0.973  Sum_probs=15.4

Q ss_pred             hcccccccccCCCCCCCC
Q 044925           86 KEETKEESDDDMGLSLFD  103 (103)
Q Consensus        86 keeeeEE~ddDmGFgLFD  103 (103)
                      ++||+|||||||||||||
T Consensus       293 ~~~~~ee~~~~~g~~lf~  310 (310)
T PTZ00135        293 PAEEEEEEEDDMGFGLFD  310 (310)
T ss_pred             ccccccCcchhccccCCC
Confidence            356778889999999998

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=97.87  E-value=5.4e-06  Score=67.21  Aligned_cols=17  Identities=53%  Similarity=0.986  Sum_probs=12.8

Q ss_pred             hcccccccccCCCCC-CC
Q 044925           86 KEETKEESDDDMGLS-LF  102 (103)
Q Consensus        86 keeeeEE~ddDmGFg-LF  102 (103)
                      ++|++||+||||||| ||
T Consensus       306 ~~~~~e~~~~d~~~~~~~  323 (323)
T PTZ00240        306 KEEEEESDEDDFGMGALF  323 (323)
T ss_pred             ccCCccCcccccCccccC
Confidence            356677888999997 55

>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p

Probab=97.19  E-value=0.00027  Score=49.14  Aligned_cols=45  Identities=9%  Similarity=-0.063  Sum_probs=27.5

Q ss_pred             eecccccCCchhhHhhhhh-cccccccHHHHHHHHHHhcCCChHHHhhhcCCCCccc
Q 044925            6 MDTVQIFWPHNTIDSGLVE-FSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGAHL   61 (103)
Q Consensus         6 ~~~~~~~~~~~~i~~~l~~-~g~vevdaekI~~li~aL~gk~I~eLIa~v~agg~a~   61 (103)
                      +..++.+|+...++.++++ -| .     +|..||.....|     +.++++||+++
T Consensus        26 L~aaGveVe~~~~~~~~~aLaG-k-----~V~eli~~g~~k-----l~~~~~~~~a~   71 (105)
T cd04411          26 LSAAGAEIEPERVKLFLSALNG-K-----NIDEVISKGKEL-----MSSQAAAAAAP   71 (105)
T ss_pred             HHHcCCCcCHHHHHHHHHHHcC-C-----CHHHHHHHHHhh-----ccCCCCccccc
Confidence            4567888888888888888 45 3     355566544322     34455444443

Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain

>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.00029  Score=49.65  Aligned_cols=26  Identities=4%  Similarity=-0.038  Sum_probs=20.3

Q ss_pred             hhhhcccccccHHHHHHHHHHhcCCChH
Q 044925           21 GLVEFSFFTSQPEKIATLIKLFEKRSAD   48 (103)
Q Consensus        21 ~l~~~g~vevdaekI~~li~aL~gk~I~   48 (103)
                      .|-.+| =+||+++|.+|++.. |.+|+
T Consensus         9 lL~~ag-kei~e~~l~~vl~aa-Gveve   34 (109)
T COG2058           9 LLHLAG-KEITEDNLKSVLEAA-GVEVE   34 (109)
T ss_pred             HHHHcc-CcCCHHHHHHHHHHc-CCCcc
Confidence            466778 699999999999965 55554

>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed

Probab=97.11  E-value=0.00071  Score=47.32  Aligned_cols=27  Identities=11%  Similarity=0.060  Sum_probs=21.7

Q ss_pred             hhhhcccccccHHHHHHHHHHhcCCChHH
Q 044925           21 GLVEFSFFTSQPEKIATLIKLFEKRSADE   49 (103)
Q Consensus        21 ~l~~~g~vevdaekI~~li~aL~gk~I~e   49 (103)
                      +|...| .+||+++|++|+++. |.++++
T Consensus         9 LL~~~g-~~it~e~I~~IL~AA-GveVee   35 (106)
T PRK06402          9 LLHSAG-KEINEDNLKKVLEAA-GVEVDE   35 (106)
T ss_pred             HHHhcC-CCCCHHHHHHHHHHc-CCCccH
Confidence            567778 799999999999976 566654

>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]

Probab=96.89  E-value=0.00072  Score=47.80  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=27.7

Q ss_pred             eeecccccCCchhhHhhhhhcccccccHHHHHHHHH----HhcCCCh
Q 044925            5 YMDTVQIFWPHNTIDSGLVEFSFFTSQPEKIATLIK----LFEKRSA   47 (103)
Q Consensus         5 ~~~~~~~~~~~~~i~~~l~~~g~vevdaekI~~li~----aL~gk~I   47 (103)
                      .+++|+.+++.+.|+.+|+++-     .-+|..||.    .|...+.
T Consensus        26 Il~sVG~E~d~e~i~~visel~-----GK~i~ElIA~G~eklAsvps   67 (112)
T KOG3449|consen   26 ILESVGAEIDDERINLVLSELK-----GKDIEELIAAGREKLASVPS   67 (112)
T ss_pred             HHHHhCcccCHHHHHHHHHHhc-----CCCHHHHHHHhHHHHhcCCC
Confidence            3678999999999999999987     234555555    5544443

>cd05831 Ribosomal_P1 Ribosomal protein P1

Probab=96.65  E-value=0.0035  Score=43.34  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=21.8

Q ss_pred             hhhhcccccccHHHHHHHHHHhcCCChHH
Q 044925           21 GLVEFSFFTSQPEKIATLIKLFEKRSADE   49 (103)
Q Consensus        21 ~l~~~g~vevdaekI~~li~aL~gk~I~e   49 (103)
                      +|...| .+||+++|++|+++. |.+++.
T Consensus        10 iL~d~~-~~~Tae~I~~ilkAa-Gveve~   36 (103)
T cd05831          10 ILHDDG-IEITADNINALLKAA-GVNVEP   36 (103)
T ss_pred             HHccCC-CCCCHHHHHHHHHHc-CCcccH
Confidence            677788 999999999999976 455553

This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=96.55  E-value=0.003  Score=50.94  Aligned_cols=38  Identities=18%  Similarity=0.072  Sum_probs=27.7

Q ss_pred             cCCchhhHhhhhhcccccccHHHHHHHHHHhcC-CChHHHhhhcC
Q 044925           12 FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEK-RSADELYLNVG   55 (103)
Q Consensus        12 ~~~~~~i~~~l~~~g~vevdaekI~~li~aL~g-k~I~eLIa~v~   55 (103)
                      ++|+++++.+|..+      .-++..|...|.+ .+|.+-|.+..
T Consensus       254 ~~t~e~~~~il~kA------~~~~~ala~~~~~~~~~~~~~~~~~  292 (330)
T PRK04019        254 IVTPETADDILSKA------VAQALALAAALADKDALDEELKEVL  292 (330)
T ss_pred             CCChhhHHHHHHHH------HHHHHHHHHHhcCcccccHHHHhhc
Confidence            46677777777666      3566677778988 99999997654

>TIGR03685 L21P_arch 50S ribosomal protein L12P

Probab=96.41  E-value=0.002  Score=44.79  Aligned_cols=26  Identities=12%  Similarity=0.034  Sum_probs=20.3

Q ss_pred             hhhhcccccccHHHHHHHHHHhcCCChH
Q 044925           21 GLVEFSFFTSQPEKIATLIKLFEKRSAD   48 (103)
Q Consensus        21 ~l~~~g~vevdaekI~~li~aL~gk~I~   48 (103)
                      +|.-.| .+||.++|++||+.- |.+++
T Consensus         9 ll~~~g-~~iT~e~I~~IL~AA-Gv~ve   34 (105)
T TIGR03685         9 LLHSAG-KEINEENLKAVLEAA-GVEVD   34 (105)
T ss_pred             HHHhcC-CCCCHHHHHHHHHHh-CCccc
Confidence            566678 799999999999975 44444

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.

>cd05832 Ribosomal_L12p Ribosomal protein L12p

Probab=96.11  E-value=0.0085  Score=41.92  Aligned_cols=26  Identities=12%  Similarity=-0.014  Sum_probs=20.3

Q ss_pred             hhhhcccccccHHHHHHHHHHhcCCChH
Q 044925           21 GLVEFSFFTSQPEKIATLIKLFEKRSAD   48 (103)
Q Consensus        21 ~l~~~g~vevdaekI~~li~aL~gk~I~   48 (103)
                      +|...| .+||+++|++||+.- |.+++
T Consensus         9 LL~~~G-~eITae~I~~IL~AA-GveVd   34 (106)
T cd05832           9 LLHYAG-KEINEENLKKVLEAA-GIEVD   34 (106)
T ss_pred             HHHhcC-CCCCHHHHHHHHHHh-CCccc
Confidence            567778 799999999999965 44444

This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera

>cd05833 Ribosomal_P2 Ribosomal protein P2

Probab=94.79  E-value=0.023  Score=39.76  Aligned_cols=13  Identities=0%  Similarity=0.210  Sum_probs=7.1

Q ss_pred             cccHHHHHHHHHH
Q 044925           29 TSQPEKIATLIKL   41 (103)
Q Consensus        29 evdaekI~~li~a   41 (103)
                      ++|+++|++||++
T Consensus        17 ~pTa~dI~~IL~A   29 (109)
T cd05833          17 SPSAADVKKILGS   29 (109)
T ss_pred             CCCHHHHHHHHHH
Confidence            4555555555554

This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2

>PLN00138 large subunit ribosomal protein LP2; Provisional

Probab=91.14  E-value=0.12  Score=36.38  Aligned_cols=19  Identities=16%  Similarity=0.270  Sum_probs=14.2

Q ss_pred             cccHHHHHHHHHHhcCCChH
Q 044925           29 TSQPEKIATLIKLFEKRSAD   48 (103)
Q Consensus        29 evdaekI~~li~aL~gk~I~   48 (103)
                      ++++++|++|++.. |.+++
T Consensus        17 ~pta~dI~~IL~Aa-Gvevd   35 (113)
T PLN00138         17 CPSAEDLKDILGSV-GADAD   35 (113)
T ss_pred             CCCHHHHHHHHHHc-CCccc
Confidence            68999999999965 34454

>PTZ00373 60S Acidic ribosomal protein P2; Provisional

Probab=89.86  E-value=0.24  Score=34.98  Aligned_cols=14  Identities=0%  Similarity=0.228  Sum_probs=9.6

Q ss_pred             cccHHHHHHHHHHh
Q 044925           29 TSQPEKIATLIKLF   42 (103)
Q Consensus        29 evdaekI~~li~aL   42 (103)
                      .+++++|++||+..
T Consensus        19 ~pTaddI~kIL~Aa   32 (112)
T PTZ00373         19 NPTKKEVKNVLSAV   32 (112)
T ss_pred             CCCHHHHHHHHHHc
Confidence            47777777777754

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=84.47  E-value=0.58  Score=38.25  Aligned_cols=12  Identities=8%  Similarity=0.243  Sum_probs=5.4

Q ss_pred             cccHHHHHHHHH
Q 044925           29 TSQPEKIATLIK   40 (103)
Q Consensus        29 evdaekI~~li~   40 (103)
                      -+|.+.+.-+|.
T Consensus       238 ~pt~~si~~~i~  249 (323)
T PTZ00240        238 IPTAATIGPMLV  249 (323)
T ss_pred             CCcHHHHHHHHH
Confidence            345555544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
3iz5_t	110	60S acidic ribosomal protein P11 - P1 (L12P); euka	99.95
3izc_t	106	60S acidic ribosomal protein RPP11 (P1); eukaryoti	99.94
3iz5_v	113	60S acidic ribosomal protein P21 - P2 (L12P); euka	99.94
3izc_v	106	60S acidic ribosomal protein (P2); eukaryotic ribo	99.93
2lbf_A	69	60S acidic ribosomal protein P1; ribosome, stalk,	99.22
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	99.2
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	99.15
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	99.12
2lbf_B	70	60S acidic ribosomal protein P2; ribosome, stalk,	99.0
3a1y_A	58	50S ribosomal protein P1 (L12P); stalk, helix SPIN	98.98
3iz5_t	110	60S acidic ribosomal protein P11 - P1 (L12P); euka	96.97
3izc_t	106	60S acidic ribosomal protein RPP11 (P1); eukaryoti	96.75
3iz5_v	113	60S acidic ribosomal protein P21 - P2 (L12P); euka	95.4
3izc_v	106	60S acidic ribosomal protein (P2); eukaryotic ribo	93.35

>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}

Probab=99.22  E-value=6.5e-12  Score=80.59  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             cccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhcCCCCc
Q 044925           10 QIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNVGSGGA   59 (103)
Q Consensus        10 ~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v~agg~   59 (103)
                      ++.+|+++|+++|+++| ++++..+++.++++|+||||++||.|+++||+
T Consensus        20 g~~~ta~~I~~il~AaG-veve~~~~~lf~~aL~gk~I~elI~~~g~g~~   68 (69)
T 2lbf_A           20 EVTVTEDKINALIKAAG-VNVEPFWPGLFAKALANVNIGSLICNVGAGGP   68 (69)
T ss_dssp             TCCCCHHHHHHHHHHHT-CCCCTHHHHHHHHHTTTSCGGGGGTTTTCCCC
T ss_pred             CCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHCCCCHHHHHHhccCCCC
Confidence            67999999999999999 99999999999999999999999999987754

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.15  E-value=3.5e-13  Score=106.86  Aligned_cols=59  Identities=32%  Similarity=0.352  Sum_probs=26.5

Q ss_pred             HhcCCChHHHhhhcCCCCcccccccccccccCCCCccchhhhhhhhcccccccccCCCCCCCC
Q 044925           41 LFEKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD  103 (103)
Q Consensus        41 aL~gk~I~eLIa~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee~keeeeEE~ddDmGFgLFD  103 (103)
                      +-++++|+++|.++++++++++++++++    +++++++++++++++||+|||||||||||||
T Consensus       259 ~~ea~~vk~~l~~~~~~~~a~a~~a~~~----~~~~~~~~~~~~~~~ee~ee~d~d~gf~lfd  317 (317)
T 2zkr_g          259 FPLAEKVKAFLADPSAFVAAAPVAAATT----AAPAAAAAPAKVEAKEESEESDEDMGFGLFD  317 (317)
T ss_dssp             --CHHHHHTTTHHHHHHHHHHHHHTTSS----HHHHHHHHHHSTTHHHHTSSCC---------
T ss_pred             hhhhhhHHHHHhccCccccccccccccc----cccccccccccccccCCccccccccCcCCCC
Confidence            3357888999999987754421111110    1111122234455566778899999999998

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=99.12  E-value=5.8e-12  Score=99.70  Aligned_cols=54  Identities=39%  Similarity=0.406  Sum_probs=0.0

Q ss_pred             cCCChHHHhhhcCCCCcccccccccccccCCCCccchhhhhhhhcccccccccCCCCCCCC
Q 044925           43 EKRSADELYLNVGSGGAHLAVAAPAVASSGLGGAALAAAVEEKKEETKEESDDDMGLSLFD  103 (103)
Q Consensus        43 ~gk~I~eLIa~v~agg~a~~aaaa~aa~~~~~a~a~~~~~ee~keeeeEE~ddDmGFgLFD  103 (103)
                      .-.+|+++|+++++++++++++++++      + +++++++++++|++|||||||||||||
T Consensus       259 ~~~~ik~~la~p~a~a~aa~~a~~~~------~-~~~~~~~~~~~e~~ee~d~d~gf~lfd  312 (312)
T 3u5i_q          259 EIEDLVDRIENPEKYAAAAPAATSAA------S-GDAAPAEEAAAEEEEESDDDMGFGLFD  312 (312)
T ss_dssp             -------------------------------------------------------------
T ss_pred             cchhHHHHHhChhhhhcccccccccc------c-ccccccccccccccccccccCCCCCCC
Confidence            46778899999998766544432211      1 112233445567778899999999998

>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A

Probab=99.00  E-value=2.5e-10  Score=73.51  Aligned_cols=43  Identities=7%  Similarity=0.115  Sum_probs=40.9

Q ss_pred             cc-cCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhh
Q 044925           10 QI-FWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLN   53 (103)
Q Consensus        10 ~~-~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~   53 (103)
                      ++ .+|+++|+++|+++| |+++.++++.++++|+||||++||++
T Consensus        15 g~~~~ta~~I~~il~aaG-vevd~~~~~~~~~aL~gk~i~elIa~   58 (70)
T 2lbf_B           15 GNSSPSAKDIKKILDSVG-IEADDDRLNKVISELNGKNIEDVIAQ   58 (70)
T ss_dssp             TCSSCCHHHHHHHHHTTT-CCCCTTHHHHHHHHHSSCCHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcCCCHHHHHHH
Confidence            55 899999999999999 99999999999999999999999964

>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=98.98  E-value=5.9e-10  Score=69.16  Aligned_cols=45  Identities=16%  Similarity=0.160  Sum_probs=42.5

Q ss_pred             ccccCCchhhHhhhhhcccccccHHHHHHHHHHhcCCChHHHhhhc
Q 044925            9 VQIFWPHNTIDSGLVEFSFFTSQPEKIATLIKLFEKRSADELYLNV   54 (103)
Q Consensus         9 ~~~~~~~~~i~~~l~~~g~vevdaekI~~li~aL~gk~I~eLIa~v   54 (103)
                      .++.+|+++|+++|+++| ++++..++..++++|+||||++||+++
T Consensus        13 ~g~~~t~~~I~~il~aaG-veve~~~~~~~~~~L~gk~i~elI~~~   57 (58)
T 3a1y_A           13 VGKEINEENLKAVLQAAG-VEPEEARIKALVAALEGVNIDEVIEKA   57 (58)
T ss_dssp             TTCCCCHHHHHHHHHHTT-CCCCHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHCCCCHHHHHHcc
Confidence            357999999999999999 999999999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00