Citrus Sinensis ID: 044978

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTCHFSASSSLGLGQSHQQTLIYSY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHccccccccEEcccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
MINSKRLIQLARKWQKMAAMKRMrisfprsaaeqnssiankghfvvyttdekrfsvpleclsnNVVIELLRMseeefglpsngpitlpcdsTFLSYVMSLVQRCMPDDLEKALLTSLstchfsassslglgqshqqTLIYSY
Flexible Loop (DISEMBL)
MINSKRLIQLARKWQKMAAMKRMRISFPRsaaeqnssiankGHFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTCHFsassslglgqshqqtliysy
Low Complexity Region (SEG)
MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTCHFsassslglgqshqqtlIYSY
Disordered region (IsUnstruct)
**************************************ANKGHFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTCHFS*******************
Disordered Region (DISOPRED)
***SKRLIQLARKWQ***************************HFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLV*************TSLS********************IYS*
Disordered Region (DISEMBL)
MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTCHF********************
Disordered Region (DISPRO)
*INSKRLIQLARKWQKMAAMK***************SIANKGHFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTCHFSASSS*****SHQQTLIYSY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTCHFSASSSLGLGQSHQQTLIYSY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.549	0.866	0.3	0.0003
P33079	93	Auxin-induced protein 10A	no	no	0.591	0.903	0.340	0.0008

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 24  RISFPRSAAEQNSSIANKGHFVVYTTDE-KRFSVPLECLSNNVVIELLRMSEEEFGLPS- 81
           + SF  + A   +    KG+  VY  ++ +RF +P+  L+     +LL  +EEEFG    
Sbjct: 10  KASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHP 69

Query: 82  NGPITLPCDSTFLSYVMSLV 101
           NG +T+PC      ++ S +
Sbjct: 70  NGGLTIPCSEDVFQHITSFL 89

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 16  KMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDE-KRFSVPLECLSNNVVIELLRMSE 74
           ++A + R R SF  + A        KG+  VY  D+ +RF++P+  L+     ELL  +E
Sbjct: 4   RIAGIVR-RTSFYTTQAASKRVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAE 62

Query: 75  EEFGLPSN-GPITLPC-DSTFLSYVMSL 100
           EEFG     G +T+PC +  FL+    L
Sbjct: 63  EEFGYDHPMGGLTIPCKEEEFLNVTAHL 90

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
356540954	149	PREDICTED: uncharacterized protein LOC10	1.0	0.953	0.590	3e-42
297744512	141	unnamed protein product [Vitis vinifera]	0.992	1.0	0.598	3e-42
225428223	148	PREDICTED: indole-3-acetic acid-induced	0.978	0.939	0.558	4e-40
297744514	142	unnamed protein product [Vitis vinifera]	0.978	0.978	0.586	5e-40
225428233	147	PREDICTED: uncharacterized protein LOC10	1.0	0.965	0.551	2e-39
297744507	254	unnamed protein product [Vitis vinifera]	0.964	0.539	0.540	1e-37
225428217	146	PREDICTED: uncharacterized protein LOC10	0.992	0.965	0.551	4e-37
225428209	178	PREDICTED: uncharacterized protein LOC10	0.971	0.775	0.527	1e-36
225428294	146	PREDICTED: auxin-induced protein 6B-like	0.978	0.952	0.536	3e-36
297744481	290	unnamed protein product [Vitis vinifera]	0.894	0.437	0.568	3e-36

>gi|356540954|ref|XP_003538949.1| PREDICTED: uncharacterized protein LOC100802572 [Glycine max]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 109/149 (73%), Gaps = 7/149 (4%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQN-----SSIANKGHFVVYTTDEKRFS 55
           MI++ RLI++ARKWQKMA   R RIS+P      N     SS ANKGHFVVY+ D KRF 
Sbjct: 1   MISANRLIEMARKWQKMAVGNRKRISYPPRNHNNNVHMHYSSTANKGHFVVYSVDHKRFE 60

Query: 56  VPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLT 115
           VPL+ LS NV  ELL  SEEEFGLPSNGPITLPCDS FL YV+SL++  +P+++EKAL+T
Sbjct: 61  VPLKYLSTNVFRELLNWSEEEFGLPSNGPITLPCDSVFLDYVISLIRERVPEEVEKALIT 120

Query: 116 SLSTCHF--SASSSLGLGQSHQQTLIYSY 142
           S+  CH   S+SSS GL QS++  +IY +
Sbjct: 121 SMVACHHEASSSSSRGLRQSNEPMIIYGF 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744512|emb|CBI37774.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLEC 60
           MIN K+LI++ARKWQK+AAMKR RI+ PR+    ++ +ANKGHFVVYT D++RF +PL  
Sbjct: 1   MINPKKLIKMARKWQKIAAMKRKRITLPRTDEILDADVANKGHFVVYTADQRRFMIPLVF 60

Query: 61  LSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTC 120
           LSNN+  EL RMSEEEFGLPSNGPITLP DS F+ Y++ L+QR M  D+EKALL S++T 
Sbjct: 61  LSNNIFRELFRMSEEEFGLPSNGPITLPYDSVFMEYIIPLIQRGMAKDIEKALLISIATS 120

Query: 121 HFSASSSLGLGQSHQQTLIYSY 142
             S SSS   GQ   Q L+  Y
Sbjct: 121 RCSLSSS-HQGQMGHQLLLCGY 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428223|ref|XP_002279270.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 111/145 (76%), Gaps = 6/145 (4%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQN------SSIANKGHFVVYTTDEKRF 54
           MI++K+LI++ARKWQKMAA++R RIS PR++ E +      SS A KGHFVVY+ DE RF
Sbjct: 1   MISAKKLIKMARKWQKMAAIRRKRISLPRTSREVDAESCSTSSTAEKGHFVVYSADESRF 60

Query: 55  SVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALL 114
            VPL  L++N+  EL +MSEEEFGLPSNGPITLPCD+ F+ Y++SLVQ+ +  DLEKALL
Sbjct: 61  VVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALL 120

Query: 115 TSLSTCHFSASSSLGLGQSHQQTLI 139
           T+++T    ++S++   Q +QQ L+
Sbjct: 121 TAIATGRCLSTSNICQEQGNQQLLV 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744514|emb|CBI37776.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 109/145 (75%), Gaps = 6/145 (4%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSS-IANKGHFVVYTTDEKRFSVPLE 59
           MIN K+LI++ARKWQKMAAM+R RIS PR+    ++  +A+KGHFVVYTTD++RF +PL 
Sbjct: 1   MINPKKLIKMARKWQKMAAMRRKRISLPRTDEVLDADRLADKGHFVVYTTDKRRFMIPLA 60

Query: 60  CLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLST 119
            LSNN++ EL +M+EEEFGL SNGPITLPCDS F+ Y++ L+QR +  D+EKALL SL+T
Sbjct: 61  YLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLAT 120

Query: 120 CHFSASSSLGLGQSH--QQTLIYSY 142
              S  S L   Q H  QQ L+ SY
Sbjct: 121 ---SCCSLLSSHQEHISQQLLVCSY 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428233|ref|XP_002279337.1| PREDICTED: uncharacterized protein LOC100257266 [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 110/147 (74%), Gaps = 5/147 (3%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQN-----SSIANKGHFVVYTTDEKRFS 55
           MI++K+LI++AR WQKMAA++R RI  PR++ E +     +S A KGHFVVY++DE RF 
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADGCSTSTAEKGHFVVYSSDESRFV 60

Query: 56  VPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLT 115
           VPL  L++N+  EL +MSEEEFGLPSNGPITLPCD+ F+ Y++SLVQ+ +  DLEKALLT
Sbjct: 61  VPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALLT 120

Query: 116 SLSTCHFSASSSLGLGQSHQQTLIYSY 142
           +++T    ++S+L   Q  QQ LI  Y
Sbjct: 121 AIATGCCLSTSNLCQEQGSQQLLICGY 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744507|emb|CBI37769.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 100/137 (72%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLEC 60
           MI++K+LI++AR WQKMAA++R RI  PR++ E ++ +A+KGHFVVYT+D  RF VPL  
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADVADKGHFVVYTSDRIRFVVPLVY 60

Query: 61  LSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLSTC 120
           L N +  EL +M+EEEFGLP NGPI LPCD+ F+ Y +SL+QR +  DLEKALL S++  
Sbjct: 61  LDNVIFRELFQMAEEEFGLPGNGPIILPCDAVFMEYAVSLIQRHVAKDLEKALLMSIAAD 120

Query: 121 HFSASSSLGLGQSHQQT 137
             S+SS     QS+  T
Sbjct: 121 RCSSSSYFHQDQSNPHT 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428217|ref|XP_002279209.1| PREDICTED: uncharacterized protein LOC100265824 [Vitis vinifera]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 105/147 (71%), Gaps = 6/147 (4%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNS-----SIANKGHFVVYTTDEKRFS 55
           MI+ K+L ++ARKWQ++AA+ R RIS  R+   +++     S+ANKGHFVVYT D++RF 
Sbjct: 1   MISPKKLNKMARKWQRIAALGRKRISSSRTNNNEDAKSCIASVANKGHFVVYTADQRRFM 60

Query: 56  VPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLT 115
           +PL  LSNN+  EL RMSEEEFGLPSNGPITLP DS F+ Y++ L+QR M  D+EKALL 
Sbjct: 61  IPLVFLSNNIFRELFRMSEEEFGLPSNGPITLPYDSVFMEYIIPLIQRGMAKDIEKALLI 120

Query: 116 SLSTCHFSASSSLGLGQSHQQTLIYSY 142
           S++T   S SSS   GQ   Q L+  Y
Sbjct: 121 SIATSRCSLSSS-HQGQMGHQLLLCGY 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428209|ref|XP_002279108.1| PREDICTED: uncharacterized protein LOC100264057 [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 108/148 (72%), Gaps = 10/148 (6%)

Query: 2   INSKRLIQLARKWQKMAAMKRMRISFPRSAAEQN-----SSIANKGHFVVYTTDEKRFSV 56
           + +K+L+++ARKWQ++AA+ R  IS PR+  + +     +S+A+KGHFVVYTTD++RF +
Sbjct: 34  MRAKKLVKMARKWQRIAALGRKTISSPRTKVDVDADNCSTSVADKGHFVVYTTDKRRFMI 93

Query: 57  PLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTS 116
           PL  LSNN++ EL +M+EEEFGL SNGPITLPCDS F+ Y++ L+QR +  D+EKALL S
Sbjct: 94  PLAYLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFS 153

Query: 117 LSTCHFSASSSLGLGQSH--QQTLIYSY 142
           L+T   S  S L   Q H  QQ L+ SY
Sbjct: 154 LAT---SCCSLLSSHQEHISQQLLVCSY 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428294|ref|XP_002282698.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 106/149 (71%), Gaps = 10/149 (6%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQN-----SSIANKGHFVVYTTDEKRFS 55
           MI+ K+LI++ARKWQ+ AA+ R RIS PR+ A+ +     +S+A+KGHFVVY TD++RF 
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFM 60

Query: 56  VPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLT 115
           +PL  LSNN+  EL +MSEEEFGL S+GPITLPCDS F+ Y++ L+QR +  D+EKAL+ 
Sbjct: 61  IPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIF 120

Query: 116 SLSTCHFSASSSLGLGQSH--QQTLIYSY 142
           SL T   S SSS    Q H  Q  L+  Y
Sbjct: 121 SLVTSRCSQSSS---HQEHISQHLLVCGY 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744481|emb|CBI37743.3| unnamed protein product [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 100/132 (75%), Gaps = 5/132 (3%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQN-----SSIANKGHFVVYTTDEKRFS 55
           MI+ K+LI++ARKWQ+ AA+ R RIS PR+ A+ +     +S+A+KGHFVVY TD++RF 
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFM 60

Query: 56  VPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLT 115
           +PL  LSNN+  EL +MSEEEFGL S+GPITLPCDS F+ Y++ L+QR +  D+EKAL+ 
Sbjct: 61  IPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIF 120

Query: 116 SLSTCHFSASSS 127
           SL T   S SSS
Sbjct: 121 SLVTSRCSQSSS 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.838	0.843	0.608	6.7e-33
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.838	0.843	0.596	2.9e-32
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.859	0.865	0.568	7.7e-32
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.838	0.843	0.575	1.3e-31
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.838	0.838	0.595	2e-31
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.838	0.832	0.575	4.2e-31
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.823	0.866	0.546	7.1e-29
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.838	0.804	0.519	5e-28
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.697	0.970	0.55	3.3e-24
TAIR|locus:2199819	123	AT1G76190 "AT1G76190" [Arabido	0.549	0.634	0.457	7.7e-17

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 73/120 (60%), Positives = 94/120 (78%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIA-NKGHFVVYTTDEKRFSVPLE 59
             MIN+K+L++LA+KWQ+ AA+KR RISF RS+   +S  A  KG FVVYT D+ RFS PL 
Sbjct:     2 MINAKKLMKLAKKWQQRAALKRKRISFQRSSITTSSQTAVEKGCFVVYTADKIRFSFPLS 61

Query:    60 CLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLST 119
              LSN +V ELL++SEEEFGLP+ GPITLP DS FL Y+++L+QR M +D EKALL S+S+
Sbjct:    62 YLSNTIVQELLKISEEEFGLPTEGPITLPFDSAFLEYLINLIQRRMDEDTEKALLLSISS 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 71/119 (59%), Positives = 92/119 (77%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLEC 60
             M+N+K+LI++A+KWQ+ AA+ R RISF RS++  +S+ A KG FVVYTTD  RF+ PL  
Sbjct:     1 MMNTKKLIKMAKKWQQRAALHRKRISFQRSSSATSSTAAEKGCFVVYTTDSTRFAFPLSY 60

Query:    61 LSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLST 119
             LSN+V  ELL++SEEEFGLP+ GPIT P DS FL Y++ LVQR M  D EKALL S+S+
Sbjct:    61 LSNSVFQELLKISEEEFGLPTGGPITSPFDSVFLEYLIKLVQRRMDADTEKALLMSISS 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 71/125 (56%), Positives = 95/125 (76%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAA-EQNSSIANKGHFVVYTTDEKRFSVPLE 59
             MIN+K+L+++A+KWQ+ AA+ R RISF RS+    +SS   KG FVVYT D+ RF+ P+ 
Sbjct:     1 MINAKKLMKMAKKWQQRAALHRKRISFQRSSVFTSSSSTVEKGCFVVYTADKIRFAFPIS 60

Query:    60 CLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLST 119
              LSN+VV ELL++SEE+FGLP+ GPITLP DS FL Y++ L+QR M +D EKALL S+S+
Sbjct:    61 YLSNSVVQELLKISEEDFGLPTEGPITLPFDSAFLEYLVKLIQRRMDEDTEKALLLSISS 120

Query:   120 --CHF 122
               C F
Sbjct:   121 ARCSF 125

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 69/120 (57%), Positives = 94/120 (78%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIA-NKGHFVVYTTDEKRFSVPLE 59
             M+N+K+L+++A+KWQ+ AA++R RISF RS    +SS A  KG FVVYT+D  RF+ P+ 
Sbjct:     1 MMNTKKLLKMAKKWQQRAALRRKRISFHRSTDTTSSSTAAEKGCFVVYTSDRIRFAFPIS 60

Query:    60 CLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLST 119
              LSN+V+ ELL++SEEEFG+P+ GPITLP DS FL Y++ LVQR M  D EKAL+TS+S+
Sbjct:    61 YLSNSVIQELLKISEEEFGIPTEGPITLPFDSVFLEYLIRLVQRRMDGDTEKALITSISS 120

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 72/121 (59%), Positives = 90/121 (74%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSS--IANKGHFVVYTTDEKRFSVPL 58
             MIN+K L++LA+ WQ+ AA+KR RISF RS+    SS     KG FVVYT D+ RFS PL
Sbjct:     2 MINAKTLMKLAKTWQQRAALKRKRISFQRSSITTTSSQTTVEKGCFVVYTADKIRFSFPL 61

Query:    59 ECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLS 118
               LSN +V ELL++SEEEFGLP+ GPITLP DS FL Y++ L+QR M +D EKALL S+S
Sbjct:    62 SYLSNTIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDEDTEKALLWSIS 121

Query:   119 T 119
             +
Sbjct:   122 S 122

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 69/120 (57%), Positives = 91/120 (75%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAA-EQNSSIANKGHFVVYTTDEKRFSVPLE 59
             MIN+K+L+++A+KWQ+ AA+ R RISF RS     +SS   KG FVVYT D+ RF+ P+ 
Sbjct:     2 MINAKKLMKMAKKWQQRAALHRKRISFQRSNVFTSSSSTVEKGCFVVYTADKIRFAFPIS 61

Query:    60 CLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLST 119
              LSN++V ELL++SEEEFGLP+ GPITLP DS FL Y++ L+QR M  D EKALL S+S+
Sbjct:    62 YLSNSIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDGDTEKALLMSISS 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 65/119 (54%), Positives = 86/119 (72%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEKRFSVPLEC 60
             M+N+K+LI++ RKWQ+ AA+ R RISF R +    S+   KG FVVYT D  RF+ P+  
Sbjct:     1 MMNTKKLIKMFRKWQQRAALHRKRISFQRPSTR--STTVEKGCFVVYTADNTRFAFPISY 58

Query:    61 LSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKALLTSLST 119
             LSN+V  E+L +SEEEFGLP+ GPITLP DS FL Y++ L++R M  D EKALL S+S+
Sbjct:    59 LSNSVFQEILEISEEEFGLPTGGPITLPFDSVFLEYLIKLIKRRMDGDTEKALLMSISS 117

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 66/127 (51%), Positives = 89/127 (70%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAE--------QNSSIANKGHFVVYTTDEK 52
             MIN+K+L+++A+KWQ+ AA+KR RISF RS            +S+   KG FVVYT D+ 
Sbjct:     1 MINTKKLLKMAKKWQQRAALKRKRISFQRSTTTTTTTTTTTSSSTAVEKGCFVVYTVDKI 60

Query:    53 RFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRCMPDDLEKA 112
             RF+ PL  L+N+V  ELL++SEEEFGL + GPITLP DS FL Y++  ++R M  D EKA
Sbjct:    61 RFAFPLSYLNNSVFEELLKISEEEFGLRAGGPITLPFDSVFLEYLIKFIERRMDGDTEKA 120

Query:   113 LLTSLST 119
             LL S+S+
Sbjct:   121 LLMSISS 127

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 55/100 (55%), Positives = 78/100 (78%)

Query:     1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIA-NKGHFVVYTTDEKRFSVPLE 59
             M+N+K+L+++A+KWQ+ AA++R RISF RS +  +SS A  KG FVVYT D+ RF+ P+ 
Sbjct:     1 MMNTKKLMKMAKKWQQRAALRRKRISFQRSNSTTSSSSAVEKGCFVVYTADQVRFAFPIS 60

Query:    60 CLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMS 99
              LSN+V+ ELL++SEEEFG+P+ GPITLP DS   S+ +S
Sbjct:    61 YLSNSVIQELLKISEEEFGIPTEGPITLPFDSIRFSWSIS 100

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2199819 AT1G76190 "AT1G76190" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
 Identities = 38/83 (45%), Positives = 59/83 (71%)

Query:    41 KGHFVVYTTDEKRFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSL 100
             KGHF VYT + KRF +PL+ L++ ++  LL+M+E+EFG   +GP+ +PCD + + +++ L
Sbjct:    23 KGHFAVYTNEGKRFVLPLDYLNHPMLQVLLQMAEDEFGTTIDGPLKVPCDGSLMDHIIML 82

Query:   101 VQRCMP---DDLEKALLTSLSTC 120
             V+R M    DD+EK+  TS STC
Sbjct:    83 VRRSMSHDYDDVEKSS-TS-STC 103

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036232001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (142 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	5e-27
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	7e-08
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-05
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	7e-05

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 96.2 bits (240), Expect = 5e-27
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 1   MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDEK-RFSVPLE 59
           M +  +    A+KW   AA  R R S  +S    +S+   KGHF VY  +E  RF VP+ 
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGSSSKS----SSADVPKGHFAVYVGEETRRFVVPIS 56

Query: 60  CLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQ 102
            L++ +  ELL  +EEEFG   +G +T+PCD     +++ +++
Sbjct: 57  YLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 41  KGHFVVYTTDEK-RFSVPLECLSNNVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMS 99
           KGHF VY  + + R+ VP+  L++     LL+ +EEEFG   +  +T+PC+      + S
Sbjct: 42  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTS 101

Query: 100 LV 101
           ++
Sbjct: 102 MI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 5   KRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTDE---KRFSVPLECL 61
           + ++  A++  K  +M+    S   S++   S +  KGH  VY  ++   KRF VP+  L
Sbjct: 5   RSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYL 64

Query: 62  SNNVVIELLRMSEEEFGL-PSNGPITLPC-DSTFLSYVMS 99
           ++ +  E L  +EEE G   S G +T+PC + +FL  + S
Sbjct: 65  NHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 39.3 bits (91), Expect = 7e-05
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 41  KGHFVVYTTDE-----KRFSVPLECLSNNVVIELLRMSEEEFGLPSN-GPITLPC-DSTF 93
           KGH  VY  ++     KRF VP+  L++    E L  +EEEFG     G +T+PC +  F
Sbjct: 37  KGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVF 96

Query: 94  LSYVMSLVQ 102
           L  + S + 
Sbjct: 97  LDLIASRLH 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	85.87
PRK02899	197	adaptor protein; Provisional	82.59

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=5.6e-38  Score=228.75  Aligned_cols=99  Identities=37%  Similarity=0.663  Sum_probs=88.9

Q ss_pred             CCChHHHHHHHHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecC-ceeEEEeccCcCcHHHHHHHHhhhhhcCC
Q 044978            1 MINSKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTD-EKRFSVPLECLSNNVVIELLRMSEEEFGL   79 (142)
Q Consensus         1 mi~~~kL~~~~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~-~~RfvVp~~yL~hp~F~eLL~~aeeEfG~   79 (142)
                      ||+.+|....++||++.++..+++.+..+...   ..++|+||||||||+ ++||+||++|||||+|++||++|+|||||
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~---~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~   77 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSS---ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGF   77 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccc---cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCc
Confidence            99999999999999998877666554433321   368999999999998 89999999999999999999999999999


Q ss_pred             CCCCCeeecCcHHHHHHHHHHHh
Q 044978           80 PSNGPITLPCDSTFLSYVMSLVQ  102 (142)
Q Consensus        80 ~~~G~L~iPC~~~~Fe~vl~~l~  102 (142)
                      +++|+|+||||+++||+++|+|+
T Consensus        78 ~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   78 DQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCCcEEeeCCHHHHHHHHHHhC
Confidence            99999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=4.2e-36  Score=220.98  Aligned_cols=91  Identities=25%  Similarity=0.490  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecC-ceeEEEeccCcCcHHHHHHHHhhhhhcCCCCC
Q 044978            4 SKRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTD-EKRFSVPLECLSNNVVIELLRMSEEEFGLPSN   82 (142)
Q Consensus         4 ~~kL~~~~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~-~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~   82 (142)
                      .++|++|+|||.+++..+..       ..+..+.++|+||||||||+ ++||+||++|||||+|++||++|||||||+++
T Consensus        12 ~~~~kq~l~r~~s~~~~~~~-------~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~   84 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQGY-------DEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD   84 (104)
T ss_pred             HHHHHHHHHHHHHhcccCCc-------ccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            57899999999987543211       01123678999999999997 58999999999999999999999999999999


Q ss_pred             CCeeecCcHHHHHHHHHHH
Q 044978           83 GPITLPCDSTFLSYVMSLV  101 (142)
Q Consensus        83 G~L~iPC~~~~Fe~vl~~l  101 (142)
                      |+|+||||+++|++++|+|
T Consensus        85 G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         85 MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=1.3e-31  Score=197.29  Aligned_cols=86  Identities=33%  Similarity=0.539  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecC-----ceeEEEeccCcCcHHHHHHHHhhhhhcCC
Q 044978            5 KRLIQLARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTD-----EKRFSVPLECLSNNVVIELLRMSEEEFGL   79 (142)
Q Consensus         5 ~kL~~~~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~-----~~RfvVp~~yL~hp~F~eLL~~aeeEfG~   79 (142)
                      .+++|+.|+-. ++.  +.+.+      ...+.+|||||||||||+     ++||+||++|||||+|++||++|||||||
T Consensus        10 ~~~k~~~~~~~-~~~--~~~~~------~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220         10 NATKQILKLNS-LAN--RNRTS------SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             HHHHHHHHHHh-hcc--ccccc------ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            45677777655 321  11111      112568999999999996     69999999999999999999999999999


Q ss_pred             CC-CCCeeecCcHHHHHHHHH
Q 044978           80 PS-NGPITLPCDSTFLSYVMS   99 (142)
Q Consensus        80 ~~-~G~L~iPC~~~~Fe~vl~   99 (142)
                      ++ +|+|+||||++.|++++.
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHH
Confidence            98 699999999999999985

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=1.3e-31  Score=198.14  Aligned_cols=89  Identities=28%  Similarity=0.497  Sum_probs=72.7

Q ss_pred             HHHHhhhhhcccCcccccccccccCCcCCCCCeEEEEecC---ceeEEEeccCcCcHHHHHHHHhhhhhcCCCC-CCCee
Q 044978           11 ARKWQKMAAMKRMRISFPRSAAEQNSSIANKGHFVVYTTD---EKRFSVPLECLSNNVVIELLRMSEEEFGLPS-NGPIT   86 (142)
Q Consensus        11 ~kKWqk~a~~~r~r~S~~~~~~~~~~~~vpkG~~~VyVG~---~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~-~G~L~   86 (142)
                      .+-|+..+-.+++-.+.+..+ .+.+.++||||+|||||+   ++||+||++|||||+|++||++|||||||++ +|+|+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~   90 (108)
T PLN03219         12 KQIFKSQSMRNKNGSSSPSSS-TTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLT   90 (108)
T ss_pred             HHHHHHHHHhcccCCCCCccC-CCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEE
Confidence            356776554455444333222 233678999999999996   7999999999999999999999999999997 69999


Q ss_pred             ecCcHHHHHHHHHH
Q 044978           87 LPCDSTFLSYVMSL  100 (142)
Q Consensus        87 iPC~~~~Fe~vl~~  100 (142)
                      |||+++.|++++..
T Consensus        91 IPCd~~~F~~ll~~  104 (108)
T PLN03219         91 IPCREESFLHLITS  104 (108)
T ss_pred             EeCCHHHHHHHHHh
Confidence            99999999999964

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=85.87  E-value=0.39  Score=33.05  Aligned_cols=55  Identities=11%  Similarity=0.205  Sum_probs=41.0

Q ss_pred             CceeEEEeccCcC-c--HHHHHHHHhhhhhcCCCCCCCeeecCcHHHHHHHHHHHhcc
Q 044978           50 DEKRFSVPLECLS-N--NVVIELLRMSEEEFGLPSNGPITLPCDSTFLSYVMSLVQRC  104 (142)
Q Consensus        50 ~~~RfvVp~~yL~-h--p~F~eLL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~~~  104 (142)
                      .+++|.++.+.|. +  ..|..++........-+.+|.+-|-++...|++||..++.+
T Consensus         6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            3678888887776 4  47888888652222224579999999999999999999984

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=82.59  E-value=1.1  Score=36.12  Aligned_cols=25  Identities=20%  Similarity=0.667  Sum_probs=21.4

Q ss_pred             cHHHHHHHHhhhhhcCCCCCCCeee
Q 044978           63 NNVVIELLRMSEEEFGLPSNGPITL   87 (142)
Q Consensus        63 hp~F~eLL~~aeeEfG~~~~G~L~i   87 (142)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4567788999999999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00