Citrus Sinensis ID: 045063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MLSFIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF
Secondary Structure (PSIPRED)
cEEEEEEcccccccHHHHHHcHHcHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHcccccccEEHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mlsfirmtnfpaktcISIAdalpkryvythqvfdeishgdlsslnsqlfsytrsrnfpaTWALFCYMHstclnltaytftpvlgacsalpapergKQVHALMIkggtdsepVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF
Flexible Loop (DISEMBL)
MLSFIrmtnfpakTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF
Low Complexity Region (SEG)
MLSFIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF
Disordered region (IsUnstruct)
***FIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQA********
Disordered Region (DISOPRED)
MLSFIR*TNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF
Disordered Region (DISEMBL)
MLSFIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF
Disordered Region (DISPRO)
*LSFIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSFIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q9FJY9	532	Pentatricopeptide repeat-	yes	no	0.982	0.323	0.545	3e-39
Q9SIT7	697	Pentatricopeptide repeat-	no	no	0.885	0.222	0.319	3e-19
Q9LU94	701	Putative pentatricopeptid	no	no	0.937	0.233	0.302	1e-17
Q9SY02	781	Pentatricopeptide repeat-	no	no	0.737	0.165	0.326	3e-17
Q9SX45	596	Pentatricopeptide repeat-	no	no	0.84	0.246	0.317	6e-17
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.828	0.167	0.315	8e-17
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.788	0.129	0.312	2e-16
Q9FGL1	576	Putative pentatricopeptid	no	no	0.845	0.256	0.331	3e-16
Q9FK93	710	Pentatricopeptide repeat-	no	no	0.925	0.228	0.3	4e-16
Q9LZ19	635	Pentatricopeptide repeat-	no	no	0.788	0.217	0.312	4e-16

>sp|Q9FJY9|PP448_ARATH Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 118/174 (67%), Gaps = 2/174 (1%)

Query: 4   FIRMTNFPAKTCISIADALPKRYVYTH--QVFDEISHGDLSSLNSQLFSYTRSRNFPATW 61
           FIR+ N   K+   +   +  R   TH   +FDE+   DLSSLNSQL S+ RS N   T 
Sbjct: 10  FIRLGNVTVKSTNLVLRCVFIRNFATHADHLFDELPQRDLSSLNSQLSSHLRSGNPNDTL 69

Query: 62  ALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121
           ALF  +H    +L+++TFTPVLGACS L  PE G+QVHALMIK G ++  + KTAL+DMY
Sbjct: 70  ALFLQIHRASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMY 129

Query: 122 SKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175
           SKYG L +SV  F+ +E KD+V+WNALLS FLR+G  KEA GVF AM RERVE 
Sbjct: 130 SKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEI 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 20  DALPKRYVYT-----------------HQVFDEISHGDLSSLNSQLFSYTRSRNFPATWA 62
           D +P+R +YT                   +F  +   D  + NS +  + +         
Sbjct: 79  DKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALC 138

Query: 63  LFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122
            F  MH     L  Y+F  VL ACS L    +G QVH+L+ K    S+  + +AL+DMYS
Sbjct: 139 YFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYS 198

Query: 123 KYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174
           K G + ++   F E+  ++VV+WN+L++ F ++G A EA  VFQ M   RVE
Sbjct: 199 KCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 11/175 (6%)

Query: 5   IRMTNFPAKTCISIADALPKRYV-----------YTHQVFDEISHGDLSSLNSQLFSYTR 53
           + +T+  A  C SI+D      +           Y + +FDE+   D  S N+ +  YT 
Sbjct: 19  LSLTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTS 78

Query: 54  SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVV 113
                  W LF  M  +  ++  Y+F+ +L   +++   + G+QVH L+IKGG +    V
Sbjct: 79  CGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYV 138

Query: 114 KTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168
            ++L+DMY+K   + ++ EAFKEI   + V+WNAL++ F++    K AF +   M
Sbjct: 139 GSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLM 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%)

Query: 31  QVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90
            +FD++   D  S  + +  Y++S +      LF  M      L   +F+  L  C+ + 
Sbjct: 364 NLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVV 423

Query: 91  APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS 150
           A E GKQ+H  ++KGG ++   V  AL+ MY K G + E+ + FKE+  KD+V+WN +++
Sbjct: 424 ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIA 483

Query: 151 SFLRHGLAKEAFGVFQAMTRE 171
            + RHG  + A   F++M RE
Sbjct: 484 GYSRHGFGEVALRFFESMKRE 504

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%)

Query: 26  YVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA 85
           Y    +VFDE+   ++ +  + +  Y +SR F     +F  M  + +     T + VL A
Sbjct: 256 YDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSA 315

Query: 86  CSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTW 145
           C+ + A  RG++VH  MIK   +      T L+D+Y K G L E++  F+ +  K+V TW
Sbjct: 316 CAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTW 375

Query: 146 NALLSSFLRHGLAKEAFGVFQAMTRERV 173
            A+++ F  HG A++AF +F  M    V
Sbjct: 376 TAMINGFAAHGYARDAFDLFYTMLSSHV 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 31  QVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90
           +VF  I   D+ + ++ L  Y ++    A   +F  +    +    +TF+ +L  C+A  
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN 508

Query: 91  AP-ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALL 149
           A   +GKQ H   IK   DS   V +AL+ MY+K G +  + E FK    KD+V+WN+++
Sbjct: 509 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 568

Query: 150 SSFLRHGLAKEAFGVFQAMTRERVEF 175
           S + +HG A +A  VF+ M + +V+ 
Sbjct: 569 SGYAQHGQAMKALDVFKEMKKRKVKM 594

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 76/141 (53%)

Query: 33  FDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92
           F++   GD  + N+ +  + +S N      +F  M+   ++   +TF   + A S     
Sbjct: 649 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708

Query: 93  ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSF 152
           ++GKQVHA++ K G DSE  V  AL+ MY+K G + ++ + F E+  K+ V+WNA+++++
Sbjct: 709 KQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAY 768

Query: 153 LRHGLAKEAFGVFQAMTRERV 173
            +HG   EA   F  M    V
Sbjct: 769 SKHGFGSEALDSFDQMIHSNV 789

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGL1|PP423_ARATH Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 13  KTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL 72
           KT  S+ DA        H+VFDE+   D+ S NS +  Y +S  F     LF  +H + +
Sbjct: 101 KTSDSLEDA--------HKVFDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDV 152

Query: 73  NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTD-SEPVVKTALMDMYSKYGLLGESV 131
               ++FT  L AC+ L     G  +H+ ++K G +    VV   L+DMY K G + ++V
Sbjct: 153 FPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAV 212

Query: 132 EAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168
             F+ +E KD V+WNA+++S  R+G  +     F  M
Sbjct: 213 LVFQHMEEKDTVSWNAIVASCSRNGKLELGLWFFHQM 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 8/170 (4%)

Query: 6   RMTNFPAKTCISIADALPKRY------VYTHQVFDEISHGDLSSLNSQLF-SYTRSRNFP 58
           RM  F     +    AL   Y      +Y  +VFD+ +H     LN+ +  +Y + ++F 
Sbjct: 262 RMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDD-THAQNIFLNTTIMDAYFQDKSFE 320

Query: 59  ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM 118
               LF  M +  +    YTF  +L + + L   ++G  +H L++K G  +  +V  AL+
Sbjct: 321 EALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALV 380

Query: 119 DMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168
           +MY+K G + ++ +AF  + F+D+VTWN ++S    HGL +EA   F  M
Sbjct: 381 NMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRM 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 75/141 (53%)

Query: 31  QVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90
           QVF+ +      + +S +  Y +++N+     L+       L    +T + V+ ACS L 
Sbjct: 218 QVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLA 277

Query: 91  APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS 150
           A   GKQ+HA++ K G  S   V ++ +DMY+K G L ES   F E++ K++  WN ++S
Sbjct: 278 ALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIIS 337

Query: 151 SFLRHGLAKEAFGVFQAMTRE 171
            F +H   KE   +F+ M ++
Sbjct: 338 GFAKHARPKEVMILFEKMQQD 358

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
255561086	418	pentatricopeptide repeat-containing prot	0.988	0.413	0.655	6e-59
224094823	540	predicted protein [Populus trichocarpa]	0.954	0.309	0.658	8e-55
312190416	527	unknown [Eutrema parvulum]	0.822	0.273	0.563	2e-40
449457630	544	PREDICTED: pentatricopeptide repeat-cont	0.822	0.264	0.561	1e-38
15239977	532	pentatricopeptide repeat-containing prot	0.982	0.323	0.545	2e-37
297794357	532	pentatricopeptide repeat-containing prot	0.988	0.325	0.542	4e-37
78499702	527	hypothetical protein [Eutrema halophilum	0.971	0.322	0.517	2e-36
225439791	498	PREDICTED: pentatricopeptide repeat-cont	0.782	0.275	0.546	2e-33
357448257	516	Pentatricopeptide repeat-containing prot	0.868	0.294	0.411	1e-22
356541437	547	PREDICTED: pentatricopeptide repeat-cont	0.771	0.246	0.475	6e-22

>gi|255561086|ref|XP_002521555.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539233|gb|EEF40826.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 131/174 (75%), Gaps = 1/174 (0%)

Query: 2   LSFIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATW 61
           L  I   NF  K C  I   L  RYV+TH +FDE  H  L SLNSQL S++R  +F ATW
Sbjct: 5   LLVIAYRNFLTKNCRKIVK-LCSRYVHTHHLFDEFPHRSLYSLNSQLASFSRLGDFLATW 63

Query: 62  ALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121
           ALF  MH  CL+L AYTFTPVL ACSALP  ERGKQVHALMIK GTD  P+ KTAL+DMY
Sbjct: 64  ALFYRMHCACLDLDAYTFTPVLSACSALPGAERGKQVHALMIKAGTDLGPIAKTALIDMY 123

Query: 122 SKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175
           SKYG LG+SV+AF+E+EF+DVVTWN+LLSSFLRHGL+ +A G+F AM RE VEF
Sbjct: 124 SKYGYLGDSVKAFEEVEFRDVVTWNSLLSSFLRHGLSNKALGIFGAMRREGVEF 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094823|ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|222853155|gb|EEE90702.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (555), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 132/173 (76%), Gaps = 6/173 (3%)

Query: 9   NFPAKTCI---SIADA---LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWA 62
           NF A+T I   S A+A   L  RYV+T  +FDE+ H DL SLNSQL SY+R  NF ATW 
Sbjct: 19  NFSARTPINGYSEANATIYLQNRYVHTGNLFDELPHRDLYSLNSQLASYSRDGNFLATWD 78

Query: 63  LFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122
           LF  +HS  L+L AYTFTPVL ACSALP  + G+QVHALMIK GTD   + KTA+MDMYS
Sbjct: 79  LFSRIHSAFLDLDAYTFTPVLRACSALPDTKCGRQVHALMIKTGTDLGTITKTAVMDMYS 138

Query: 123 KYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175
           KYG LGESV+ F+E+EF+DVVTWNAL+SSFLRHGLAKEA GVF+AM RE VE 
Sbjct: 139 KYGCLGESVKVFEEMEFRDVVTWNALVSSFLRHGLAKEALGVFRAMRRESVEI 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312190416|gb|ADQ43215.1| unknown [Eutrema parvulum]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 106/149 (71%)

Query: 27  VYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC 86
           V+   VF+E+  GDLS+LNSQL SY R  +   T  LF  MH    +L+++TFTPVLGAC
Sbjct: 30  VHADHVFEELPQGDLSTLNSQLSSYLRRGSPNGTLDLFLKMHRASPDLSSHTFTPVLGAC 89

Query: 87  SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWN 146
           + L  PE G+QVHALM K G ++  + KTAL+DMYSKYG L +SV  F+ +E KDVV+WN
Sbjct: 90  ALLSYPEMGRQVHALMFKQGAETGTISKTALIDMYSKYGQLVDSVTVFESVEDKDVVSWN 149

Query: 147 ALLSSFLRHGLAKEAFGVFQAMTRERVEF 175
           ALLS FLR+G  KEA G+F AM RE+VE 
Sbjct: 150 ALLSGFLRNGKGKEALGLFAAMYREKVEI 178

Source: Eutrema parvulum

Species: Eutrema parvulum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457630|ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like [Cucumis sativus] gi|449529896|ref|XP_004171934.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like [Cucumis sativus]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 102/146 (69%)

Query: 30  HQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89
           HQ+FDE+   D+ SLNS L SY R       W+LF  MH +   LTA+T T VL ACSAL
Sbjct: 46  HQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSAL 105

Query: 90  PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALL 149
           P  + G+ VH L+IK G  S  V KTA++DMYSK GLL +SV+ F+E+E +DVV WN+LL
Sbjct: 106 PTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLL 165

Query: 150 SSFLRHGLAKEAFGVFQAMTRERVEF 175
           SSFLR GLA+EA  VF+ M RE+VEF
Sbjct: 166 SSFLREGLAEEALNVFEEMKREKVEF 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239977|ref|NP_201451.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171135|sp|Q9FJY9.1|PP448_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66500, mitochondrial; Flags: Precursor gi|10177531|dbj|BAB10926.1| unnamed protein product [Arabidopsis thaliana] gi|332010838|gb|AED98221.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 118/174 (67%), Gaps = 2/174 (1%)

Query: 4   FIRMTNFPAKTCISIADALPKRYVYTH--QVFDEISHGDLSSLNSQLFSYTRSRNFPATW 61
           FIR+ N   K+   +   +  R   TH   +FDE+   DLSSLNSQL S+ RS N   T 
Sbjct: 10  FIRLGNVTVKSTNLVLRCVFIRNFATHADHLFDELPQRDLSSLNSQLSSHLRSGNPNDTL 69

Query: 62  ALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121
           ALF  +H    +L+++TFTPVLGACS L  PE G+QVHALMIK G ++  + KTAL+DMY
Sbjct: 70  ALFLQIHRASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMY 129

Query: 122 SKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175
           SKYG L +SV  F+ +E KD+V+WNALLS FLR+G  KEA GVF AM RERVE 
Sbjct: 130 SKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEI 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794357|ref|XP_002865063.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310898|gb|EFH41322.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 118/175 (67%), Gaps = 2/175 (1%)

Query: 3   SFIRMTNFPAKTCISIADALPKRYVYTH--QVFDEISHGDLSSLNSQLFSYTRSRNFPAT 60
            FIR+ +   K+   +   +  R   TH   +FDE+   DLSSLNSQL SY RS N   T
Sbjct: 9   GFIRLGDVIGKSTNLVLRYVFIRNFVTHADHLFDELPQRDLSSLNSQLSSYLRSGNPNGT 68

Query: 61  WALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120
            ALF  MH    +L+++TFTPVLGAC+ L  PE G+QVHALMIK G ++  + KTAL++M
Sbjct: 69  LALFLEMHRASPDLSSHTFTPVLGACALLSYPETGRQVHALMIKQGAETGTISKTALINM 128

Query: 121 YSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175
           YSKYG L +SV  F+ +E KDVV+WNALLS FLR+G  KEA GVF AM RERVE 
Sbjct: 129 YSKYGHLVDSVRVFESVEEKDVVSWNALLSGFLRNGKGKEALGVFAAMCRERVEI 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78499702|gb|ABB45856.1| hypothetical protein [Eutrema halophilum]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 117/172 (68%), Gaps = 2/172 (1%)

Query: 6   RMTNFPAKTCISIADALPKRYVYTH--QVFDEISHGDLSSLNSQLFSYTRSRNFPATWAL 63
           R+ +F  K+   +   +P R +  H   +FDE+S  DLS LNSQL S+ R  N   T AL
Sbjct: 7   RLGDFAGKSTNLLNRFVPVRNLVAHADHLFDELSQRDLSLLNSQLSSHLRCGNPNGTLAL 66

Query: 64  FCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK 123
           F  MH    +L+++TFTPVLGAC+ L +P+ G+QVHALMIK G ++  + KTAL+DMYSK
Sbjct: 67  FLKMHRASPDLSSHTFTPVLGACALLSSPKTGRQVHALMIKQGAETGTISKTALIDMYSK 126

Query: 124 YGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175
           YG L +SV  F+ +E KDVV+WN+LLS FLR+G  KEA GVF AM RE +E 
Sbjct: 127 YGHLVDSVTVFESVEDKDVVSWNSLLSGFLRNGKGKEALGVFAAMYRETIEI 178

Source: Eutrema halophilum

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439791|ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like, partial [Vitis vinifera]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 96/141 (68%), Gaps = 4/141 (2%)

Query: 33  FDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92
           FDE+ H DL +LNS + S+ RS N  A  ++F  +H    +L +YT TPVL    A+  P
Sbjct: 1   FDEMPHRDLYTLNSLIASHVRSGNAVAALSVFRRIHRAGSHLNSYTLTPVL----AVLDP 56

Query: 93  ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSF 152
             GKQVHAL IK G+D+  V KTALMDMYSKYG LG SV  F+E+ FKDVVTWN +LSSF
Sbjct: 57  ICGKQVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSSF 116

Query: 153 LRHGLAKEAFGVFQAMTRERV 173
           +RHG  +EA  VF+ M +E V
Sbjct: 117 VRHGRPEEALAVFREMQKEGV 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448257|ref|XP_003594404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355483452|gb|AES64655.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 6/158 (3%)

Query: 19  ADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT 78
           A A P    ++     ++ H  +S LNS + SY R  +  + + LF  +    ++L ++T
Sbjct: 5   AVAQPLSSFHSQSDHHQLLHRPISELNSLITSYIRRGHPISAFNLFLSLRRIRIDLDSHT 64

Query: 79  FTPVLGACSALPAPER-GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137
           FTP+L      P+P   GKQ+H+ MIK G+DS  V KTAL+DMYS++G L  S++ F E+
Sbjct: 65  FTPLL-----RPSPTSLGKQLHSQMIKTGSDSGTVPKTALLDMYSRHGSLNSSLKVFDEM 119

Query: 138 EFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175
             +DVV WN LLS FLR G   EA  V + M RE VE 
Sbjct: 120 LHRDVVAWNTLLSCFLRCGKPDEAIRVLREMGRENVEM 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541437|ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like [Glycine max]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 82/141 (58%), Gaps = 6/141 (4%)

Query: 40  DLSSLNSQLFSYTRSRNFPATWALFCYM----HSTCLNLTAYTFTPVLGACSALPAPER- 94
           D+S  NS + SY R  +  +   LF  +    HS  +   AYTFT +L A S L    + 
Sbjct: 47  DISQTNSLIASYVRRGDPVSALTLFHSLRRRAHSDVV-ADAYTFTSILRASSLLRVSGQF 105

Query: 95  GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLR 154
           G QVHA M+K G DS  V KTAL+DMYSK G L E+ + F E+  +DVV WNALLS FLR
Sbjct: 106 GTQVHAQMLKTGADSGTVAKTALLDMYSKCGSLDEATKVFDEMRHRDVVAWNALLSCFLR 165

Query: 155 HGLAKEAFGVFQAMTRERVEF 175
                EAFGV + M RE VE 
Sbjct: 166 CDRPVEAFGVLREMGRENVEL 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2154965	532	AT5G66500 "AT5G66500" [Arabido	0.977	0.321	0.549	5.9e-41
TAIR|locus:2054131	697	SLO2 "AT2G13600" [Arabidopsis	0.817	0.205	0.349	5.5e-17
TAIR|locus:2011892	596	AT1G50270 "AT1G50270" [Arabido	0.897	0.263	0.314	1.4e-16
TAIR|locus:2164880	710	EMB2744 "EMBRYO DEFECTIVE 2744	0.908	0.223	0.294	5.2e-16
TAIR|locus:2038603	868	AT2G27610 "AT2G27610" [Arabido	0.954	0.192	0.302	5.6e-16
TAIR|locus:2168963	576	AT5G47460 "AT5G47460" [Arabido	0.794	0.241	0.335	5.9e-16
TAIR|locus:2140235	781	AT4G02750 [Arabidopsis thalian	0.794	0.177	0.340	6.1e-16
TAIR|locus:2122634	527	OTP70 "AT4G25270" [Arabidopsis	0.828	0.275	0.319	8.1e-16
TAIR|locus:2083631	689	AT3G15130 "AT3G15130" [Arabido	0.902	0.229	0.268	1.7e-15
TAIR|locus:2117084	545	AT4G18840 "AT4G18840" [Arabido	0.805	0.258	0.323	1.8e-15

TAIR|locus:2154965 AT5G66500 "AT5G66500" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 95/173 (54%), Positives = 118/173 (68%)

Query:     4 FIRMTNFPAKTCISIADALPKRYVYTH--QVFDEISHGDLSSLNSQLFSYTRSRNFPATW 61
             FIR+ N   K+   +   +  R   TH   +FDE+   DLSSLNSQL S+ RS N   T 
Sbjct:    10 FIRLGNVTVKSTNLVLRCVFIRNFATHADHLFDELPQRDLSSLNSQLSSHLRSGNPNDTL 69

Query:    62 ALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121
             ALF  +H    +L+++TFTPVLGACS L  PE G+QVHALMIK G ++  + KTAL+DMY
Sbjct:    70 ALFLQIHRASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMY 129

Query:   122 SKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174
             SKYG L +SV  F+ +E KD+V+WNALLS FLR+G  KEA GVF AM RERVE
Sbjct:   130 SKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVE 182

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 50/143 (34%), Positives = 76/143 (53%)

Query:    32 VFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91
             +F  +   D  + NS +  + +          F  MH     L  Y+F  VL ACS L  
Sbjct:   108 LFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLND 167

Query:    92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSS 151
               +G QVH+L+ K    S+  + +AL+DMYSK G + ++   F E+  ++VV+WN+L++ 
Sbjct:   168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227

Query:   152 FLRHGLAKEAFGVFQAMTRERVE 174
             F ++G A EA  VFQ M   RVE
Sbjct:   228 FEQNGPAVEALDVFQMMLESRVE 250

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2011892 AT1G50270 "AT1G50270" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 50/159 (31%), Positives = 81/159 (50%)

Query:    17 SIADALPKRYVY--THQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL 74
             S+ D   K   Y    +VFDE+   ++ +  + +  Y +SR F     +F  M  + +  
Sbjct:   245 SLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAP 304

Query:    75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAF 134
                T + VL AC+ + A  RG++VH  MIK   +      T L+D+Y K G L E++  F
Sbjct:   305 NEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVF 364

Query:   135 KEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173
             + +  K+V TW A+++ F  HG A++AF +F  M    V
Sbjct:   365 ERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHV 403

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2164880 EMB2744 "EMBRYO DEFECTIVE 2744" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.2e-16, P = 5.2e-16
 Identities = 48/163 (29%), Positives = 88/163 (53%)

Query:     9 NFPAKTCISIADALPK--RYVYTHQVFDEISHGDLSSLNSQLF-SYTRSRNFPATWALFC 65
             N   + C ++ +   K  + +Y  +VFD+ +H     LN+ +  +Y + ++F     LF 
Sbjct:   269 NAEVEACGALINMYGKCGKVLYAQRVFDD-THAQNIFLNTTIMDAYFQDKSFEEALNLFS 327

Query:    66 YMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG 125
              M +  +    YTF  +L + + L   ++G  +H L++K G  +  +V  AL++MY+K G
Sbjct:   328 KMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSG 387

Query:   126 LLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168
              + ++ +AF  + F+D+VTWN ++S    HGL +EA   F  M
Sbjct:   388 SIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRM 430

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 52/172 (30%), Positives = 88/172 (51%)

Query:     8 TNFPAKTCISIA--DALPK--RYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWAL 63
             TN+   + +  A  DA  K  +     +VF  I   D+ + ++ L  Y ++    A   +
Sbjct:   422 TNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKM 481

Query:    64 FCYMHSTCLNLTAYTFTPVLGACSALPAPE-RGKQVHALMIKGGTDSEPVVKTALMDMYS 122
             F  +    +    +TF+ +L  C+A  A   +GKQ H   IK   DS   V +AL+ MY+
Sbjct:   482 FGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYA 541

Query:   123 KYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174
             K G +  + E FK    KD+V+WN+++S + +HG A +A  VF+ M + +V+
Sbjct:   542 KKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2168963 AT5G47460 "AT5G47460" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 5.9e-16, P = 5.9e-16
 Identities = 47/140 (33%), Positives = 75/140 (53%)

Query:    30 HQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89
             H+VFDE+   D+ S NS +  Y +S  F     LF  +H + +    ++FT  L AC+ L
Sbjct:   110 HKVFDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARL 169

Query:    90 PAPERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNAL 148
                  G  +H+ ++K G +    VV   L+DMY K G + ++V  F+ +E KD V+WNA+
Sbjct:   170 HLSPLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAI 229

Query:   149 LSSFLRHGLAKEAFGVFQAM 168
             ++S  R+G  +     F  M
Sbjct:   230 VASCSRNGKLELGLWFFHQM 249

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 6.1e-16, P = 6.1e-16
 Identities = 48/141 (34%), Positives = 79/141 (56%)

Query:    32 VFDEISHGDLSSLNSQLFSYTRS-RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90
             +FD++   D  S  + +  Y++S  +F A   LF  M      L   +F+  L  C+ + 
Sbjct:   365 LFDKMPKRDPVSWAAMIAGYSQSGHSFEAL-RLFVQMEREGGRLNRSSFSSALSTCADVV 423

Query:    91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS 150
             A E GKQ+H  ++KGG ++   V  AL+ MY K G + E+ + FKE+  KD+V+WN +++
Sbjct:   424 ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIA 483

Query:   151 SFLRHGLAKEAFGVFQAMTRE 171
              + RHG  + A   F++M RE
Sbjct:   484 GYSRHGFGEVALRFFESMKRE 504

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2122634 OTP70 "AT4G25270" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 8.1e-16, P = 8.1e-16
 Identities = 47/147 (31%), Positives = 76/147 (51%)

Query:    30 HQVFDEISHGDLSSL--NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS 87
             H+VFD +S  D S    NS +  Y     +    AL+  M    +    +TF  VL AC 
Sbjct:   147 HEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACG 206

Query:    88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNA 147
              + + + G+ +H  ++K G   +  V  AL+ MY+K G + ++   F  I  KD V+WN+
Sbjct:   207 GIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNS 266

Query:   148 LLSSFLRHGLAKEAFGVFQAMTRERVE 174
             +L+ +L HGL  EA  +F+ M +  +E
Sbjct:   267 MLTGYLHHGLLHEALDIFRLMVQNGIE 293

GO:0008380 "RNA splicing" evidence=IMP

GO:0009451 "RNA modification" evidence=IMP

TAIR|locus:2083631 AT3G15130 "AT3G15130" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 43/160 (26%), Positives = 84/160 (52%)

Query:    17 SIADALPK-RYVYT-HQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL 74
             S+ D   K  Y+++  + FD+I    + S +S +  Y +   F     LF  +      +
Sbjct:   252 SLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI 311

Query:    75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAF 134
              ++  + ++G  +      +GKQ+ AL +K  +  E  V  +++DMY K GL+ E+ + F
Sbjct:   312 DSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCF 371

Query:   135 KEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174
              E++ KDV++W  +++ + +HGL K++  +F  M R  +E
Sbjct:   372 AEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIE 411

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2117084 AT4G18840 "AT4G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 46/142 (32%), Positives = 76/142 (53%)

Query:    31 QVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYM-HSTCLNLTAYTFTPVLGACSAL 89
             +VFD +   D+ S N+ + +Y     +     +F  M   +      +T   VL AC++L
Sbjct:   258 EVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASL 317

Query:    90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALL 149
              +  +G+ VH  + K G + E  + TAL+DMYSK G + +++E F+    +DV TWN+++
Sbjct:   318 GSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSII 377

Query:   150 SSFLRHGLAKEAFGVFQAMTRE 171
             S    HGL K+A  +F  M  E
Sbjct:   378 SDLSVHGLGKDALEIFSEMVYE 399

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-17
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-17
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-15
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-15
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-14
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-10
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
pfam01535	31	pfam01535, PPR, PPR repeat	8e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 15  CISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL 74
           C  I DA          VFD +      + NS L  Y           L+  M  + +++
Sbjct: 272 CGDIEDA--------RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323

Query: 75  TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAF 134
             +TF+ ++   S L   E  KQ HA +I+ G   + V  TAL+D+YSK+G + ++   F
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383

Query: 135 KEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173
             +  K++++WNAL++ +  HG   +A  +F+ M  E V
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 77.6 bits (191), Expect = 4e-17
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 15  CISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL 74
           C  + DA         ++FDE+   +L+S  + +     + N+   +ALF  M     + 
Sbjct: 171 CGMLIDA--------RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

Query: 75  TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAF 134
              TF  +L A + L +   G+Q+H  ++K G   +  V  AL+DMYSK G + ++   F
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282

Query: 135 KEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173
             +  K  V WN++L+ +  HG ++EA  ++  M    V
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 71.8 bits (176), Expect = 4e-15
 Identities = 40/142 (28%), Positives = 68/142 (47%)

Query: 32  VFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91
           VFD +   D  S N+ +  Y  +        LF  M    ++    T T V+ AC  L  
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303

Query: 92  PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSS 151
              G+++H  ++K G   +  V  +L+ MY   G  GE+ + F  +E KD V+W A++S 
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363

Query: 152 FLRHGLAKEAFGVFQAMTRERV 173
           + ++GL  +A   +  M ++ V
Sbjct: 364 YEKNGLPDKALETYALMEQDNV 385

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 71.8 bits (176), Expect = 4e-15
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 31  QVFDEISHGDLSSLNSQLFSYT-RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89
           +VF  I   D+ S  S +      +R F A    F  M  T L   + T    L AC+ +
Sbjct: 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALI-FFRQMLLT-LKPNSVTLIAALSACARI 502

Query: 90  PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALL 149
            A   GK++HA +++ G   +  +  AL+D+Y + G +  +   F   E KDVV+WN LL
Sbjct: 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILL 561

Query: 150 SSFLRHGLAKEAFGVFQAMTRERV 173
           + ++ HG    A  +F  M    V
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGV 585

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 68.7 bits (168), Expect = 4e-14
 Identities = 41/143 (28%), Positives = 69/143 (48%)

Query: 32  VFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91
           VF ++   DL S N  +  Y ++  F     L+  M    +    YTF  VL  C  +P 
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202

Query: 92  PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSS 151
             RG++VHA +++ G + +  V  AL+ MY K G +  +   F  +  +D ++WNA++S 
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262

Query: 152 FLRHGLAKEAFGVFQAMTRERVE 174
           +  +G   E   +F  M    V+
Sbjct: 263 YFENGECLEGLELFFTMRELSVD 285

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 30/91 (32%), Positives = 49/91 (53%)

Query: 78  TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137
           T   VL AC+ L   + G ++H L  + G  S  VV  AL++MYSK   + +++E F  I
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450

Query: 138 EFKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168
             KDV++W ++++    +    EA   F+ M
Sbjct: 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 2/151 (1%)

Query: 23  PKRYVYTHQVFDEIS-HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAYTFT 80
            +         D+        SL SQ+              LF  + + C   L A T+ 
Sbjct: 68  IEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYD 127

Query: 81  PVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK 140
            ++ AC AL +    K V+  +   G + +  +   ++ M+ K G+L ++   F E+  +
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187

Query: 141 DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171
           ++ +W  ++   +  G  +EAF +F+ M  +
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWED 218

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.2 bits (103), Expect = 1e-06
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 140 KDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174
            DVVT+N L+  + + G  +EA  +F  M +  ++
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK 35

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 8e-05
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 143 VTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173
           VT+N+L+S + + G  +EA  +F+ M  + V
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 141 DVVTWNALLSSFLRHGLAKEAFGVFQAM 168
           DVVT+N L+    R G   EA  +   M
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.7 bits (81), Expect = 0.001
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 143 VTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174
           VT+N L+    + G  +EA  +F+ M    +E
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PF13041	50	PPR_2: PPR repeat family	99.69
PF13041	50	PPR_2: PPR repeat family	99.6
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.53
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.41
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.38
PF12854	34	PPR_1: PPR repeat	99.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.2
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.17
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.15
PF12854	34	PPR_1: PPR repeat	99.08
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.06
PF13812	34	PPR_3: Pentatricopeptide repeat domain	99.02
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.97
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.94
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.92
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.91
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.89
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.84
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.75
PRK12370	553	invasion protein regulator; Provisional	98.72
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.72
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.71
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.7
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.68
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.65
PRK12370	553	invasion protein regulator; Provisional	98.65
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.64
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.64
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.63
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.63
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.57
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.54
PRK14574	822	hmsH outer membrane protein; Provisional	98.47
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.44
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.4
PRK14574	822	hmsH outer membrane protein; Provisional	98.37
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.36
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.36
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.35
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.34
PRK11189	296	lipoprotein NlpI; Provisional	98.33
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.32
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.31
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.26
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.25
KOG2003	840	consensus TPR repeat-containing protein [General f	98.24
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.21
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.2
PRK15359	144	type III secretion system chaperone protein SscB;	98.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.17
KOG1126	638	consensus DNA-binding cell division cycle control	98.16
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.15
PRK11189	296	lipoprotein NlpI; Provisional	98.12
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.11
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.11
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.11
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.05
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.03
PRK15359	144	type III secretion system chaperone protein SscB;	98.02
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.01
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.0
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.0
KOG1126	638	consensus DNA-binding cell division cycle control	97.99
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.98
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.97
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.96
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.95
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.94
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.92
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.92
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.88
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.87
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.86
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.84
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.84
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.81
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.8
KOG1129	478	consensus TPR repeat-containing protein [General f	97.78
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.78
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.77
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.77
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.72
KOG1129	478	consensus TPR repeat-containing protein [General f	97.71
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.7
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.67
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.62
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.62
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.59
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.57
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.57
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.54
KOG2076	895	consensus RNA polymerase III transcription factor	97.51
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.48
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.47
KOG3941	406	consensus Intermediate in Toll signal transduction	97.43
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.39
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.38
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.34
PF12688	120	TPR_5: Tetratrico peptide repeat	97.34
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.32
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.32
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.24
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.23
KOG2076	895	consensus RNA polymerase III transcription factor	97.21
PLN02789	320	farnesyltranstransferase	97.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.19
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.19
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.18
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.17
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.16
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.16
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.09
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.06
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.03
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.02
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.99
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.97
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.94
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.93
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.93
KOG2003	840	consensus TPR repeat-containing protein [General f	96.89
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.85
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.85
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.8
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.79
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.76
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.76
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.7
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.67
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.62
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.61
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.59
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.52
PF12688	120	TPR_5: Tetratrico peptide repeat	96.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.46
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.41
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.39
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.39
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.36
PF13371	73	TPR_9: Tetratricopeptide repeat	96.29
PRK10803	263	tol-pal system protein YbgF; Provisional	96.27
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.23
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.21
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.13
PRK04841	903	transcriptional regulator MalT; Provisional	96.1
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.07
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.02
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.01
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.99
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.95
KOG1125	579	consensus TPR repeat-containing protein [General f	95.91
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.87
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.84
PLN02789	320	farnesyltranstransferase	95.74
KOG0553	304	consensus TPR repeat-containing protein [General f	95.71
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.7
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.7
PRK10803	263	tol-pal system protein YbgF; Provisional	95.7
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.63
KOG0553	304	consensus TPR repeat-containing protein [General f	95.61
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	95.48
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.45
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	95.41
PF13371	73	TPR_9: Tetratricopeptide repeat	95.34
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.21
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	95.2
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.2
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.15
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.13
KOG1125	579	consensus TPR repeat-containing protein [General f	95.11
PRK04841	903	transcriptional regulator MalT; Provisional	95.0
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.74
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.71
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.71
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.64
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.45
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.44
PRK15331	165	chaperone protein SicA; Provisional	94.34
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.25
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.23
KOG0547	606	consensus Translocase of outer mitochondrial membr	94.22
PF13929	292	mRNA_stabil: mRNA stabilisation	94.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.05
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	93.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	93.89
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.84
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.84
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.61
PF13762	145	MNE1: Mitochondrial splicing apparatus component	93.58
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.55
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.54
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	93.49
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.4
PF13929	292	mRNA_stabil: mRNA stabilisation	93.37
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.14
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.06
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	93.03
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.97
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	92.84
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	92.77
KOG3941	406	consensus Intermediate in Toll signal transduction	92.59
PF13428	44	TPR_14: Tetratricopeptide repeat	92.58
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	92.31
PF13762	145	MNE1: Mitochondrial splicing apparatus component	92.25
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	92.11
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.91
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.63
PRK15331	165	chaperone protein SicA; Provisional	91.46
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	91.45
KOG4555	175	consensus TPR repeat-containing protein [Function	91.4
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	91.29
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	91.14
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	91.03
PF13428	44	TPR_14: Tetratricopeptide repeat	91.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.99
COG4700	251	Uncharacterized protein conserved in bacteria cont	90.93
COG4700	251	Uncharacterized protein conserved in bacteria cont	90.9
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.89
PF13512	142	TPR_18: Tetratricopeptide repeat	90.85
PF13512	142	TPR_18: Tetratricopeptide repeat	90.78
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.63
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.6
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.37
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.18
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.09
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.05
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.78
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.68
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	89.54
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.31
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.3
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	89.25
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	89.17
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	88.64
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.47
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.4
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.39
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	88.37
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	87.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	87.53
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.46
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.31
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.29
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.28
KOG2610	491	consensus Uncharacterized conserved protein [Funct	86.89
PF09477	116	Type_III_YscG: Bacterial type II secretion system	86.59
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.15
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.09
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	85.77
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	85.75
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	85.44
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.38
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.35
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	85.17
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	84.98
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.79
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	84.39
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.26
KOG2041	1189	consensus WD40 repeat protein [General function pr	84.2
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.09
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	83.86
PRK10564	303	maltose regulon periplasmic protein; Provisional	83.62
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	83.61
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	83.36
KOG0403	645	consensus Neoplastic transformation suppressor Pdc	83.28
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	83.17
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.1
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	82.58
COG5108	1117	RPO41 Mitochondrial DNA-directed RNA polymerase [T	82.47
PF13431	34	TPR_17: Tetratricopeptide repeat	82.28
cd08326	84	CARD_CASP9 Caspase activation and recruitment doma	82.17
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	82.09
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	81.4
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	81.35
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	81.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.97
cd08332	90	CARD_CASP2 Caspase activation and recruitment doma	80.96
PRK11639	169	zinc uptake transcriptional repressor; Provisional	80.74
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.67
KOG2300	629	consensus Uncharacterized conserved protein [Funct	80.43
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	80.25
PRK10564	303	maltose regulon periplasmic protein; Provisional	80.03
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	80.01

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=253.34  Aligned_cols=173  Identities=25%  Similarity=0.366  Sum_probs=165.2

Q ss_pred             hhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh
Q 045063            3 SFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT   78 (175)
Q Consensus         3 ~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t   78 (175)
                      ..+.+.|+.++    ++||++|++.|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|.+|.+.|+.||..|
T Consensus       248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t  327 (697)
T PLN03081        248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT  327 (697)
T ss_pred             HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            34455555444    55999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCCh
Q 045063           79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLA  158 (175)
Q Consensus        79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~  158 (175)
                      |++++.+|++.|++++|.++++.|.+.|+.||..+|++||++|+++|++++|.++|++|.+||+++||+||.+|++.|+.
T Consensus       328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~  407 (697)
T PLN03081        328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG  407 (697)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCC
Q 045063          159 KEAFGVFQAMTRERVEF  175 (175)
Q Consensus       159 ~~a~~~~~~m~~~g~~p  175 (175)
                      ++|.++|++|.+.|+.|
T Consensus       408 ~~A~~lf~~M~~~g~~P  424 (697)
T PLN03081        408 TKAVEMFERMIAEGVAP  424 (697)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999988

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.7e-36  Score=247.78  Aligned_cols=174  Identities=24%  Similarity=0.397  Sum_probs=166.7

Q ss_pred             chhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063            2 LSFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY   77 (175)
Q Consensus         2 ~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~   77 (175)
                      +.++++.|+.|+    ++||.+|++.|+++.|.++|++|+.+|.++||++|.+|++.|+.++|+++|.+|.+.|+.||..
T Consensus       210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~  289 (857)
T PLN03077        210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM  289 (857)
T ss_pred             HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence            445666666554    5599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCC
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGL  157 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~  157 (175)
                      ||++++.+|++.|+++.|.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|.+||.++||+||.+|++.|+
T Consensus       290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~  369 (857)
T PLN03077        290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL  369 (857)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccCC
Q 045063          158 AKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       158 ~~~a~~~~~~m~~~g~~p  175 (175)
                      +++|.++|++|.+.|+.|
T Consensus       370 ~~~A~~lf~~M~~~g~~P  387 (857)
T PLN03077        370 PDKALETYALMEQDNVSP  387 (857)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999999987

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.8e-35  Score=239.81  Aligned_cols=174  Identities=24%  Similarity=0.410  Sum_probs=167.9

Q ss_pred             chhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063            2 LSFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY   77 (175)
Q Consensus         2 ~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~   77 (175)
                      +..+.+.|+.|+    +.|+.+|++.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|++.|+.|+..
T Consensus       146 ~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~  225 (697)
T PLN03081        146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR  225 (697)
T ss_pred             HHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence            566777787776    4499999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCC
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGL  157 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~  157 (175)
                      ||+.++.+|++.|..+.+.+++..+.+.|+.||..+||+||++|+++|++++|.++|+.|.++|+++||+||.+|++.|+
T Consensus       226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~  305 (697)
T PLN03081        226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGY  305 (697)
T ss_pred             hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccCC
Q 045063          158 AKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       158 ~~~a~~~~~~m~~~g~~p  175 (175)
                      .++|.++|++|.+.|+.|
T Consensus       306 ~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        306 SEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHHHHHHHHHcCCCC
Confidence            999999999999999987

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.5e-34  Score=238.81  Aligned_cols=173  Identities=25%  Similarity=0.362  Sum_probs=165.0

Q ss_pred             hhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh
Q 045063            3 SFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT   78 (175)
Q Consensus         3 ~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t   78 (175)
                      +++++.+..++    |+||.+|++.|+++.|+++|++|++||..+||++|.+|++.|++++|+++|++|+..|+.||..|
T Consensus       110 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t  189 (857)
T PLN03077        110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT  189 (857)
T ss_pred             HHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence            44455555443    56999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCCh
Q 045063           79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLA  158 (175)
Q Consensus        79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~  158 (175)
                      |++++++|++.++++.+.+++..+.+.|+.||..+||++|++|++.|++++|.++|++|.+||.++||+||.+|++.|+.
T Consensus       190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~  269 (857)
T PLN03077        190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC  269 (857)
T ss_pred             HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCC
Q 045063          159 KEAFGVFQAMTRERVEF  175 (175)
Q Consensus       159 ~~a~~~~~~m~~~g~~p  175 (175)
                      ++|.++|++|.+.|+.|
T Consensus       270 ~eAl~lf~~M~~~g~~P  286 (857)
T PLN03077        270 LEGLELFFTMRELSVDP  286 (857)
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999987

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.2e-34  Score=238.00  Aligned_cols=174  Identities=17%  Similarity=0.246  Sum_probs=154.2

Q ss_pred             chhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhcc----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC
Q 045063            2 LSFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN   73 (175)
Q Consensus         2 ~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~   73 (175)
                      +.+|.+.|+.|+    ++||.+|++.|+++.|.++|++|.    .||..+||+||.+|++.|++++|+++|++|++.|+.
T Consensus       460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~  539 (1060)
T PLN03218        460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK  539 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence            566777777665    459999999999999999999997    478999999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHhcCCCchhHHHHHHHHHH--hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC----CCchhHHH
Q 045063           74 LTAYTFTPVLGACSALPAPERGKQVHALMIK--GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF----KDVVTWNA  147 (175)
Q Consensus        74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~  147 (175)
                      ||..||+.++++|++.|++++|.++|++|.+  .|+.||..+|+++|++|++.|++++|.++|+.|.+    |+..+||+
T Consensus       540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns  619 (1060)
T PLN03218        540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI  619 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence            9999999999999999999999999999975  57889999999999999999999999999999974    46789999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063          148 LLSSFLRHGLAKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       148 li~~~~~~g~~~~a~~~~~~m~~~g~~p  175 (175)
                      +|.+|++.|++++|.++|++|.+.|+.|
T Consensus       620 LI~ay~k~G~~deAl~lf~eM~~~Gv~P  647 (1060)
T PLN03218        620 AVNSCSQKGDWDFALSIYDDMKKKGVKP  647 (1060)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999988877

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.7e-34  Score=236.43  Aligned_cols=163  Identities=15%  Similarity=0.156  Sum_probs=146.6

Q ss_pred             cchhhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           13 KTCISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      +++||.+|++.|++++|.++|++|.+    |+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus       582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k  661 (1060)
T PLN03218        582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH  661 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            45588888888888888888888874    56788999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHHhcCChHHHHHH
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      .|++++|.+++++|.+.|+.||..+|+++|++|++.|++++|.++|++|.    .||.++||+||.+|++.|++++|.++
T Consensus       662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel  741 (1060)
T PLN03218        662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV  741 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999985    68999999999999999999999999


Q ss_pred             HHHHHhcccCC
Q 045063          165 FQAMTRERVEF  175 (175)
Q Consensus       165 ~~~m~~~g~~p  175 (175)
                      |++|.+.|+.|
T Consensus       742 f~eM~~~Gi~P  752 (1060)
T PLN03218        742 LSEMKRLGLCP  752 (1060)
T ss_pred             HHHHHHcCCCC
Confidence            99999988887

>PF13041 PPR_2: PPR repeat family

Probab=99.69  E-value=6.3e-17  Score=88.38  Aligned_cols=50  Identities=18%  Similarity=0.362  Sum_probs=44.9

Q ss_pred             CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      ||+++||++|.+|++.|++++|+++|++|++.|++||..||++++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68889999999999999999999999999999999999999999998875

>PF13041 PPR_2: PPR repeat family

Probab=99.60  E-value=2.4e-15  Score=82.06  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=47.5

Q ss_pred             CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 045063           74 LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK  123 (175)
Q Consensus        74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  123 (175)
                      ||.++||+++++|++.|++++|.++|++|++.|+.||..||+.+|++|+|
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.53  E-value=3.3e-13  Score=103.49  Aligned_cols=158  Identities=9%  Similarity=0.032  Sum_probs=126.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +...+.+.|++++|.+.|+++.+  | +...+..+...+.+.|++++|.+.|+++.+.+......+++.+..++.+.|++
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~  265 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE  265 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence            44566788999999999988753  3 45567788888999999999999999987653332345678888899999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHh---cCChHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLR---HGLAKEAFGVFQA  167 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~---~g~~~~a~~~~~~  167 (175)
                      ++|...++.+.+.  .|+...+..+...+.+.|++++|..+++.+.  .|+...++.++..+..   .|+.+++..++++
T Consensus       266 ~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~  343 (389)
T PRK11788        266 AEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD  343 (389)
T ss_pred             HHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence            9999999988875  4666677888899999999999999998765  4788888888888775   5588899999999


Q ss_pred             HHhcccCC
Q 045063          168 MTRERVEF  175 (175)
Q Consensus       168 m~~~g~~p  175 (175)
                      |.+++++|
T Consensus       344 ~~~~~~~~  351 (389)
T PRK11788        344 LVGEQLKR  351 (389)
T ss_pred             HHHHHHhC
Confidence            99877665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.41  E-value=1.4e-11  Score=94.49  Aligned_cols=154  Identities=9%  Similarity=0.051  Sum_probs=101.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH----hhHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA----YTFTPVLGACSA   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~----~t~~~ll~~~~~   88 (175)
                      +...|.+.|+++.|..+|+++.+   .+..+++.++..+.+.|++++|.+.|..+.+.+..++.    ..+..+...+.+
T Consensus       113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  192 (389)
T PRK11788        113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA  192 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence            67777777888888888877754   35667777777777777777777777777655432221    134455556667


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC--chhHHHHHHHHHhcCChHHHHHH
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KD--VVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      .|++++|...++++.+.. +.+...+..+...|.+.|++++|.++|+.+.+  |+  ..+++.+..+|.+.|+.++|...
T Consensus       193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~  271 (389)
T PRK11788        193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF  271 (389)
T ss_pred             CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            777777777777776542 22344666666777777777777777777662  32  23466667777777777777777


Q ss_pred             HHHHHh
Q 045063          165 FQAMTR  170 (175)
Q Consensus       165 ~~~m~~  170 (175)
                      ++++.+
T Consensus       272 l~~~~~  277 (389)
T PRK11788        272 LRRALE  277 (389)
T ss_pred             HHHHHH
Confidence            776654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=1.5e-11  Score=92.76  Aligned_cols=127  Identities=14%  Similarity=0.199  Sum_probs=107.2

Q ss_pred             CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063           39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM  118 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  118 (175)
                      +...+|.+||.++||-...+.|.++|++-.....+.+..+||.++.+.+-    ..+..+..+|....+.||..|+|+++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence            35568999999999999999999999999999999999999999987763    44488999999989999999999999


Q ss_pred             HHHHhcCChHHHHH----HHHhcc----CCCchhHHHHHHHHHhcCChHH-HHHHHHHHH
Q 045063          119 DMYSKYGLLGESVE----AFKEIE----FKDVVTWNALLSSFLRHGLAKE-AFGVFQAMT  169 (175)
Q Consensus       119 ~~~~~~g~~~~a~~----~~~~m~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~  169 (175)
                      .+..+.|+++.|..    ++.+|+    +|...+|..+|..++|.++..+ +..++.++.
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~  340 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ  340 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence            99999999988654    555555    7899999999999999988743 444444443

>PF12854 PPR_1: PPR repeat

Probab=99.25  E-value=1.3e-11  Score=61.42  Aligned_cols=34  Identities=32%  Similarity=0.554  Sum_probs=26.2

Q ss_pred             hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          105 GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       105 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +|+.||..+||+||++|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3677888888888888888888888888887774

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.20  E-value=1.1e-09  Score=91.32  Aligned_cols=153  Identities=6%  Similarity=-0.025  Sum_probs=73.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +...+.+.|+++.|..+++.+..   .+...|..+..+|.+.|++++|...|+++.+.. +.+...+..+..++.+.|++
T Consensus       573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  651 (899)
T TIGR02917       573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY  651 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence            44445555555555555555432   234445555555555555555555555554331 12233444455555555555


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...++.+.+.. +.+...+..+...+...|++++|.++++.+.+.   +...|..+...+.+.|++++|...|+++.
T Consensus       652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  730 (899)
T TIGR02917       652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL  730 (899)
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            55555555554421 223344555555555555555555555544321   33344444455555555555555555544


Q ss_pred             h
Q 045063          170 R  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       731 ~  731 (899)
T TIGR02917       731 K  731 (899)
T ss_pred             h
Confidence            3

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.17  E-value=1.9e-09  Score=89.82  Aligned_cols=155  Identities=12%  Similarity=0.043  Sum_probs=78.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +..++.+.|+++.|...|+++.+   .+...+..+..++.+.|++++|.+.|.++.+.. +.+..++..+...+...|++
T Consensus       607 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  685 (899)
T TIGR02917       607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRT  685 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence            55555566666666666665432   234445555555555555555555555554331 12233444444444444444


Q ss_pred             hhHHHHHHHHHHhC--------------------------------CCcchHHHHHHHHHHHhcCChHHHHHHHHhccC-
Q 045063           93 ERGKQVHALMIKGG--------------------------------TDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF-  139 (175)
Q Consensus        93 ~~a~~~~~~m~~~~--------------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-  139 (175)
                      ++|..+++.+.+..                                ..|+..++..+..+|.+.|++++|.+.++.+.+ 
T Consensus       686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  765 (899)
T TIGR02917       686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT  765 (899)
T ss_pred             HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            44444444444332                                123334444445555555555555555544431 


Q ss_pred             -C-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          140 -K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       140 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                       | +...++.+...|.+.|+.++|.+.|+++.+.
T Consensus       766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence             1 3445555555566666666666666665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=4.9e-10  Score=84.71  Aligned_cols=151  Identities=12%  Similarity=0.060  Sum_probs=121.0

Q ss_pred             cchhhhhhcCCCChhHHHHHhhhccCC----CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           13 KTCISIADALPKRYVYTHQVFDEISHG----DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      +.+||.+.|+-...+.|.+++.+-.+.    +..+||.+|.+-.-.    ...++..+|....++||..|||.+++|.++
T Consensus       210 ~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak  285 (625)
T KOG4422|consen  210 VSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAK  285 (625)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence            344999999999999999999998753    778899998765433    238899999999999999999999999999


Q ss_pred             CCCchh----HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH-HHHHHHhcc--------CC----CchhHHHHHHH
Q 045063           89 LPAPER----GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE-SVEAFKEIE--------FK----DVVTWNALLSS  151 (175)
Q Consensus        89 ~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~--------~~----~~~~~~~li~~  151 (175)
                      .|+++.    +.+++.+|++-|+.|...+|.-+|.-+.+.++..+ |..++.++.        +|    |..-|..-++.
T Consensus       286 fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I  365 (625)
T KOG4422|consen  286 FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI  365 (625)
T ss_pred             hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence            997764    56888999999999999999999999999888755 444444332        22    45556677777


Q ss_pred             HHhcCChHHHHHHHHH
Q 045063          152 FLRHGLAKEAFGVFQA  167 (175)
Q Consensus       152 ~~~~g~~~~a~~~~~~  167 (175)
                      |.+..+.+-|.++..-
T Consensus       366 c~~l~d~~LA~~v~~l  381 (625)
T KOG4422|consen  366 CSSLRDLELAYQVHGL  381 (625)
T ss_pred             HHHhhhHHHHHHHHHH
Confidence            8888888888776443

>PF12854 PPR_1: PPR repeat

Probab=99.08  E-value=1.6e-10  Score=57.42  Aligned_cols=31  Identities=39%  Similarity=0.672  Sum_probs=29.8

Q ss_pred             CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          139 FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       139 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      .||.+|||+||++||+.|++++|.++|++|.
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            6899999999999999999999999999984

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.06  E-value=2.3e-08  Score=70.53  Aligned_cols=154  Identities=8%  Similarity=-0.051  Sum_probs=107.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +...+...|+++.|...|++..+  | +...+..+...+...|++++|.+.|.+..+.. +.+...+..+-..+...|++
T Consensus        37 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccH
Confidence            56677778888888888887643  2 45567777778888888888888888776553 23445666667777778888


Q ss_pred             hhHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGT-DSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ++|.+.+++...... ......+..+...|.+.|++++|...++....  | +...|..+...+...|++++|...+++.
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  195 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY  195 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888888887775322 22334566677777788888888887777652  2 3456777777777888888888877776


Q ss_pred             Hh
Q 045063          169 TR  170 (175)
Q Consensus       169 ~~  170 (175)
                      .+
T Consensus       196 ~~  197 (234)
T TIGR02521       196 QQ  197 (234)
T ss_pred             HH
Confidence            54

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=99.02  E-value=6.1e-10  Score=55.32  Aligned_cols=34  Identities=32%  Similarity=0.450  Sum_probs=32.6

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063          142 VVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       142 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  175 (175)
                      +.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999999998

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.97  E-value=8e-08  Score=67.76  Aligned_cols=155  Identities=8%  Similarity=-0.036  Sum_probs=127.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~   91 (175)
                      +...+...|+++.|.+.|++..+   .+...+..+...+...|++++|.+.|.+.......+ ....+..+-.++...|+
T Consensus        71 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  150 (234)
T TIGR02521        71 LALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD  150 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence            77788899999999999998753   355678888899999999999999999997653323 33467777788899999


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +++|...+.+..+.. +.+...+..+...+...|++++|...++...+   .+...+..+...+...|+.+.|..+.+.+
T Consensus       151 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       151 FDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999988753 33466888999999999999999999998752   35567778888889999999999998877


Q ss_pred             Hhc
Q 045063          169 TRE  171 (175)
Q Consensus       169 ~~~  171 (175)
                      ...
T Consensus       230 ~~~  232 (234)
T TIGR02521       230 QKL  232 (234)
T ss_pred             Hhh
Confidence            653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.94  E-value=1.8e-09  Score=53.76  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063          143 VTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  175 (175)
                      ++||++|.+|++.|++++|.++|++|.+.|++|
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p   33 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEP   33 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            489999999999999999999999999999988

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.92  E-value=1.7e-09  Score=53.92  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=30.5

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA   76 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~   76 (175)
                      .+||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37899999999999999999999999988988873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.91  E-value=1.1e-08  Score=75.51  Aligned_cols=150  Identities=10%  Similarity=0.017  Sum_probs=56.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhcc-----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEIS-----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~   90 (175)
                      .+..+.+.++++.+..+++++.     ..+...|..+...+.+.|+.++|.+.|++..+.. +-|......++..+...|
T Consensus       116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~  194 (280)
T PF13429_consen  116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMG  194 (280)
T ss_dssp             --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCC
Confidence            3344444445555444444432     1233344444444445555555555555443321 112334444444444445


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      +.+++.+++....+.. +.|...|..+..+|...|+.++|...|+...+  | |..+...+-..+...|+.++|.++.++
T Consensus       195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred             ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4444444444444332 23334444445555555555555555544431  2 334444444444455555555444443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.89  E-value=2.8e-09  Score=52.86  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=28.9

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL   74 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~   74 (175)
                      +.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3578888888888888888888888888888877

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.84  E-value=3.9e-08  Score=72.47  Aligned_cols=152  Identities=18%  Similarity=0.192  Sum_probs=96.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhcc--CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEIS--HGDLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      ++.. ...++++.|.++++..-  .++...+..++..+.+.|+++++.++++...+. ..+.+...|...-..+.+.|+.
T Consensus        84 l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~  162 (280)
T PF13429_consen   84 LIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP  162 (280)
T ss_dssp             -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred             cccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence            4444 68888999988887753  346677888999999999999999999997654 3455667888888889999999


Q ss_pred             hhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ++|...+++..+.  .| |....+.++..+...|+.+++.+++....   ..|...|..+-.+|...|+.++|..+|++.
T Consensus       163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~  240 (280)
T PF13429_consen  163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA  240 (280)
T ss_dssp             HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence            9999999999885  35 57788999999999999999888877765   347788999999999999999999999987


Q ss_pred             Hh
Q 045063          169 TR  170 (175)
Q Consensus       169 ~~  170 (175)
                      ..
T Consensus       241 ~~  242 (280)
T PF13429_consen  241 LK  242 (280)
T ss_dssp             HH
T ss_pred             cc
Confidence            65

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.81  E-value=6.7e-09  Score=50.29  Aligned_cols=31  Identities=35%  Similarity=0.632  Sum_probs=28.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063          143 VTWNALLSSFLRHGLAKEAFGVFQAMTRERV  173 (175)
Q Consensus       143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  173 (175)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            5899999999999999999999999999885

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.81  E-value=4.3e-07  Score=74.07  Aligned_cols=153  Identities=9%  Similarity=-0.101  Sum_probs=124.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-.++...|++++|...|++..+  | ....|..+...+...|++++|...|++..+.. +-+...|..+-..+...|++
T Consensus       337 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~  415 (615)
T TIGR00990       337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEF  415 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence            44566678999999999998754  4 35578888888999999999999999986652 23456888888889999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...|++..+.. +.+...+..+...+.+.|++++|...|+...+  | +...|+.+-..+...|++++|...|++-.
T Consensus       416 ~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al  494 (615)
T TIGR00990       416 AQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI  494 (615)
T ss_pred             HHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999999988753 33466788888999999999999999998763  3 56788899999999999999999988865


Q ss_pred             h
Q 045063          170 R  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       495 ~  495 (615)
T TIGR00990       495 E  495 (615)
T ss_pred             h
Confidence            4

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.78  E-value=7.1e-07  Score=73.28  Aligned_cols=120  Identities=8%  Similarity=-0.088  Sum_probs=56.3

Q ss_pred             HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchh----HHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063           49 FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPER----GKQVHALMIKGGTDSEPVVKTALMDMYSKY  124 (175)
Q Consensus        49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  124 (175)
                      .++.+.|++++|...|.+..+.. +-+...+..+-..+.+.|++++    |...+++..+.. +.+...+..+...+.+.
T Consensus       220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~  297 (656)
T PRK15174        220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT  297 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence            34444444444444444443321 1122234444444444555443    444444444321 12233555555555555


Q ss_pred             CChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          125 GLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       125 g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      |++++|...++...  .| +...+..+...+.+.|++++|...|+++.+
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~  346 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR  346 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55555555555543  22 233445555555566666666666655543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.75  E-value=9.1e-07  Score=72.64  Aligned_cols=154  Identities=12%  Similarity=0.009  Sum_probs=123.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcch----HHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPA----TWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      +..++.+.|++++|...|++..+   .+...+..+-..+.+.|++++    |...|++..+.. +-+...+..+-..+.+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~  296 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIR  296 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence            34667788999999999988753   356678889999999999986    899999987652 2245588899999999


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchh-HHHHHHHHHhcCChHHHHHHH
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVT-WNALLSSFLRHGLAKEAFGVF  165 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~-~~~li~~~~~~g~~~~a~~~~  165 (175)
                      .|++++|...+++..+.. +.+...+..+...|.+.|++++|...++.+.  .|+... +..+..++...|+.++|...|
T Consensus       297 ~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l  375 (656)
T PRK15174        297 TGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF  375 (656)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999998753 2345577888999999999999999999887  454433 334566788999999999999


Q ss_pred             HHHHhc
Q 045063          166 QAMTRE  171 (175)
Q Consensus       166 ~~m~~~  171 (175)
                      ++..+.
T Consensus       376 ~~al~~  381 (656)
T PRK15174        376 EHYIQA  381 (656)
T ss_pred             HHHHHh
Confidence            987654

>PRK12370 invasion protein regulator; Provisional

Probab=98.72  E-value=1.1e-06  Score=70.80  Aligned_cols=117  Identities=9%  Similarity=-0.026  Sum_probs=50.4

Q ss_pred             hcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHH
Q 045063           20 DALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGK   96 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~   96 (175)
                      +...|++++|...|++..+  | +...|..+-.++...|++++|...+++..+..... ...+..+...+...|++++|.
T Consensus       348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~  426 (553)
T PRK12370        348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAI  426 (553)
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHH
Confidence            3444555555555555432  2 23344444555555555555555555543332111 111111222233344555555


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      ..+++..+...+-+...+..+..+|...|++++|...+..+
T Consensus       427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            55555443221112223444444555555555555555544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.72  E-value=5.2e-07  Score=66.84  Aligned_cols=147  Identities=14%  Similarity=0.021  Sum_probs=110.5

Q ss_pred             hhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh----cCCCch
Q 045063           18 IADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS----ALPAPE   93 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~----~~~~~~   93 (175)
                      ..+...|++++|.+++...  .+.......+..|.+.++++.|.+.++.|.+..  .| .+...+..++.    ....++
T Consensus       110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence            4567789999999988765  566677888999999999999999999997652  33 33344444443    334799


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLA-KEAFGVFQAMT  169 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~-~~a~~~~~~m~  169 (175)
                      +|..+|+++.+. ..+++.+.+.+.-++...|++++|.+++.+....   |..+...+|.+....|+. +.+.+.+.++.
T Consensus       185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            999999998654 6788899999999999999999999999987643   555666677777788877 66777888776


Q ss_pred             h
Q 045063          170 R  170 (175)
Q Consensus       170 ~  170 (175)
                      .
T Consensus       264 ~  264 (290)
T PF04733_consen  264 Q  264 (290)
T ss_dssp             H
T ss_pred             H
Confidence            4

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.71  E-value=4.7e-07  Score=77.01  Aligned_cols=165  Identities=12%  Similarity=0.071  Sum_probs=138.6

Q ss_pred             CCCcchhhhhhcCCCChhHHHHHhhhccCC--CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh
Q 045063           10 FPAKTCISIADALPKRYVYTHQVFDEISHG--DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS   87 (175)
Q Consensus        10 ~~~~~~ll~~~~~~~~~~~a~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~   87 (175)
                      +..|.++++.-..-|.-+...++|++..+-  ....|..|...|.+...+++|-++|+.|.+. +.-....|....+.+.
T Consensus      1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLL 1575 (1710)
T ss_pred             HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHh
Confidence            456777777777778888899999998863  4667999999999999999999999999877 3356678999999999


Q ss_pred             cCCCchhHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHH
Q 045063           88 ALPAPERGKQVHALMIKGGT-DSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      +..+-+.|..++.+..+.-. +-+.....-.+..-.+.|+.+.+..+|+.....   -...|+.+|+.=.+.|+.+.+..
T Consensus      1576 ~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred             cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH
Confidence            99999999999999887421 124556677777778999999999999998733   57789999999999999999999


Q ss_pred             HHHHHHhcccCC
Q 045063          164 VFQAMTRERVEF  175 (175)
Q Consensus       164 ~~~~m~~~g~~p  175 (175)
                      +|++..+.++.|
T Consensus      1656 lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1656 LFERVIELKLSI 1667 (1710)
T ss_pred             HHHHHHhcCCCh
Confidence            999999888765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.70  E-value=1.7e-06  Score=73.63  Aligned_cols=143  Identities=10%  Similarity=-0.042  Sum_probs=61.7

Q ss_pred             cCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHH
Q 045063           21 ALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQ   97 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~   97 (175)
                      ...|++++|...|+++..  ++...+..+...+.+.|+.++|.+.|.+..+..  |+. ..+..+.....+.|++++|..
T Consensus       520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~  597 (987)
T PRK09782        520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN  597 (987)
T ss_pred             HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence            355556666555555432  222233344444455555555555555544332  111 122222222333345555555


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           98 VHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        98 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      .+++..+.  .|+...|..+...+.+.|++++|...++...  .| +...++.+-..+...|+.++|...+++
T Consensus       598 ~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~  668 (987)
T PRK09782        598 DLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER  668 (987)
T ss_pred             HHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55444432  2334444444444445555555544444443  12 223333333444444444444444443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.68  E-value=1.3e-06  Score=71.21  Aligned_cols=150  Identities=7%  Similarity=-0.011  Sum_probs=68.6

Q ss_pred             hhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           19 ADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      ++...|++++|...|++..+  | +...+..+..++.+.|++++|+..|.+..+. .+-+...++.+-..+...|++++|
T Consensus       408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A  486 (615)
T TIGR00990       408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEA  486 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHH
Confidence            34444444444444444321  1 2333444444444555555555555554332 111233444455555555555555


Q ss_pred             HHHHHHHHHhCCCc-----ch-HHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           96 KQVHALMIKGGTDS-----EP-VVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        96 ~~~~~~m~~~~~~~-----~~-~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      ...|++..+.....     +. ..++.....|...|++++|.+.++...  .| +...+..+...+.+.|++++|...|+
T Consensus       487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e  566 (615)
T TIGR00990       487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE  566 (615)
T ss_pred             HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            55555544321100     00 011112222233455555555555432  22 33356666666677777777777666


Q ss_pred             HHH
Q 045063          167 AMT  169 (175)
Q Consensus       167 ~m~  169 (175)
                      +..
T Consensus       567 ~A~  569 (615)
T TIGR00990       567 RAA  569 (615)
T ss_pred             HHH
Confidence            653

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.65  E-value=3e-08  Score=47.95  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCL   72 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~   72 (175)
                      ++||++|++|++.|++++|.++|++|++.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888888888888888888888887764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK12370 invasion protein regulator; Provisional

Probab=98.65  E-value=2.7e-06  Score=68.61  Aligned_cols=146  Identities=8%  Similarity=-0.092  Sum_probs=114.2

Q ss_pred             CCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhHHH
Q 045063           22 LPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERGKQ   97 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a~~   97 (175)
                      ..++++.|...+++..+  | +...+..+-..+...|++++|...|++..+.+  |+ ...+..+-..+...|++++|..
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            44668999999998764  3 66778888888899999999999999987663  44 4477778888999999999999


Q ss_pred             HHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccC---CC-chhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063           98 VHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEF---KD-VVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus        98 ~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .+++..+..  |+. ..+..+...+...|++++|...+++..+   |+ ...+..+-.++...|+.++|...++++...
T Consensus       394 ~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        394 TINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ  470 (553)
T ss_pred             HHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence            999998753  443 2333445556778999999999988752   43 445677778888999999999999887543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.64  E-value=9.7e-07  Score=67.76  Aligned_cols=120  Identities=9%  Similarity=-0.004  Sum_probs=99.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      |+..+...++++.|.++|+++.+.+......+...+...++-.+|.+++++..+. .+-+......-.+.+.+.++.+.|
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence            7788888899999999999998877777778888888888888999999998754 223455555566778889999999


Q ss_pred             HHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           96 KQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ..+.++..+  +.|+.+ +|..|..+|...|+++.|...++.++
T Consensus       254 L~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  254 LEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999887  456665 99999999999999999999988886

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.64  E-value=2.6e-07  Score=75.48  Aligned_cols=149  Identities=13%  Similarity=0.024  Sum_probs=90.3

Q ss_pred             chhhhhhcCCCChhHHHHHhhhccCC----CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063           14 TCISIADALPKRYVYTHQVFDEISHG----DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL   89 (175)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~   89 (175)
                      .++|.-||..|+++.|- +|.-|+-+    +...|+.++.+..++|+.+.+.           .|.+.||+.|+++|..+
T Consensus        29 qsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ayr~h   96 (1088)
T KOG4318|consen   29 QSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAYRIH   96 (1088)
T ss_pred             HHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHHHhc
Confidence            34777777777776666 66666543    3445666666666666666554           57778999999999999


Q ss_pred             CCch---hHHHHHHHHH----HhCCCcchH-H-------------HHHHHHHHHhcCChHHHHHH---------------
Q 045063           90 PAPE---RGKQVHALMI----KGGTDSEPV-V-------------KTALMDMYSKYGLLGESVEA---------------  133 (175)
Q Consensus        90 ~~~~---~a~~~~~~m~----~~~~~~~~~-~-------------~~~li~~~~~~g~~~~a~~~---------------  133 (175)
                      |++.   .+++.+....    ..|+..... .             -.+.+.-....|.++.+.++               
T Consensus        97 GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v  176 (1088)
T KOG4318|consen   97 GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV  176 (1088)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence            8754   3333222222    222211100 0             01111222222333333322               


Q ss_pred             -HHhcc------------------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063          134 -FKEIE------------------FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE  174 (175)
Q Consensus       134 -~~~m~------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  174 (175)
                       ++++.                  .+++.+|.+++.+-...|+.+.|..++.+|.++|+.
T Consensus       177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp  236 (1088)
T KOG4318|consen  177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP  236 (1088)
T ss_pred             HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence             33332                  257889999999999999999999999999999964

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.63  E-value=4e-06  Score=70.13  Aligned_cols=155  Identities=7%  Similarity=-0.031  Sum_probs=106.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCC-------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-----------CCCH-
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGD-------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-----------NLTA-   76 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-----------~~~~-   76 (175)
                      +-.+|...|++++|...|+++.+.+       ......+..++.+.|++++|...+.++.+...           .|+. 
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~  357 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD  357 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence            5567777888888888888764321       12355566677788888888888888765421           1221 


Q ss_pred             --hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHH
Q 045063           77 --YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSS  151 (175)
Q Consensus        77 --~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~  151 (175)
                        ..+..+...+...|+.++|.+.++++... -+-+...+..+...+...|++++|.+.++...  .| +...+-.+...
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~  436 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT  436 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence              23445556677778888888888887764 23456678888888888888888888888766  34 34455566667


Q ss_pred             HHhcCChHHHHHHHHHHHhc
Q 045063          152 FLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       152 ~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +.+.|+++.|..+++++.+.
T Consensus       437 al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        437 ALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHhCCHHHHHHHHHHHHHh
Confidence            77888888888888887653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.63  E-value=2.2e-06  Score=73.00  Aligned_cols=152  Identities=7%  Similarity=-0.111  Sum_probs=122.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHH---HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLN---SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +..++.+.|++++|...|++..+.+....+   .+.....+.|++++|...|.+..+.  .|+...+..+-.++.+.|+.
T Consensus       548 la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~  625 (987)
T PRK09782        548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV  625 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence            455678899999999999988654332233   3333444569999999999998654  35677888999999999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...+++..... +.+...++.+-..+...|++++|.+.++...  .| +...+..+-.++...|+.++|...|++..
T Consensus       626 deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        626 PAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999998753 2345678888889999999999999999876  34 66789999999999999999999999876


Q ss_pred             h
Q 045063          170 R  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       705 ~  705 (987)
T PRK09782        705 D  705 (987)
T ss_pred             h
Confidence            5

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.57  E-value=7.1e-07  Score=55.87  Aligned_cols=81  Identities=7%  Similarity=0.021  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCCHhhHHHHHHHHhcCC--------CchhHHHHHHHHHHhCCCcchHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLTAYTFTPVLGACSALP--------APERGKQVHALMIKGGTDSEPVV  113 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~  113 (175)
                      +-...|..+...+++.....+|...+++|+ .|+..+|+.++.+.++..        ++.....+|+.|...+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            345667777778999999999999999999 899999999999998754        35577889999999999999999


Q ss_pred             HHHHHHHHHh
Q 045063          114 KTALMDMYSK  123 (175)
Q Consensus       114 ~~~li~~~~~  123 (175)
                      |+.++....+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.54  E-value=8.5e-06  Score=71.07  Aligned_cols=157  Identities=6%  Similarity=-0.051  Sum_probs=123.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      +...+...|+.++|.++++.-+ .+...+..+-..+.+.|++++|.+.|++..+.. +-+...+..+...+...|+.++|
T Consensus       579 ~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA  656 (1157)
T PRK11447        579 TANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAA  656 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            4556788999999999998433 355567788899999999999999999987752 23456888999999999999999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-Cc------hhHHHHHHHHHhcCChHHHHHHHH
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DV------VTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~------~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      .+.++...+.. +.+...+..+..++...|++++|.++++....  | +.      ..+..+-..+.+.|+.++|...|+
T Consensus       657 ~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~  735 (1157)
T PRK11447        657 RAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK  735 (1157)
T ss_pred             HHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999877532 23455677788899999999999999999863  2 11      345555677889999999999999


Q ss_pred             HHHh-cccCC
Q 045063          167 AMTR-ERVEF  175 (175)
Q Consensus       167 ~m~~-~g~~p  175 (175)
                      +-.. .|+.|
T Consensus       736 ~Al~~~~~~~  745 (1157)
T PRK11447        736 DAMVASGITP  745 (1157)
T ss_pred             HHHhhcCCCC
Confidence            8754 35543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.47  E-value=1.7e-05  Score=66.42  Aligned_cols=150  Identities=11%  Similarity=-0.000  Sum_probs=111.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCc--hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDL--SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSA   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~   88 (175)
                      -.....+.|+++.|...|++..+  |+.  ..+ .++..+...|+.++|+..+++..    .|+..   ....+-..+..
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN  114 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence            34456789999999999999874  432  234 88888889999999999999986    34333   33333456778


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHh--cCChHHHHHHHH
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLR--HGLAKEAFGVFQ  166 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~a~~~~~  166 (175)
                      .|++++|.++++++.+.. +-+...+..++..|...++.++|.+.++...+.+......+..++..  .++..+|++.++
T Consensus       115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e  193 (822)
T PRK14574        115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASS  193 (822)
T ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            899999999999999864 23456777889999999999999999999885543332224445554  555656999999


Q ss_pred             HHHhc
Q 045063          167 AMTRE  171 (175)
Q Consensus       167 ~m~~~  171 (175)
                      ++.+.
T Consensus       194 kll~~  198 (822)
T PRK14574        194 EAVRL  198 (822)
T ss_pred             HHHHh
Confidence            98775

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.44  E-value=1.6e-05  Score=57.02  Aligned_cols=154  Identities=12%  Similarity=0.093  Sum_probs=114.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CC-c---hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CCH-hhHHHHHHHHh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GD-L---SSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LTA-YTFTPVLGACS   87 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~~-~t~~~ll~~~~   87 (175)
                      +...+.+.|+++.|...|+++..  |+ .   ..+..+-.++.+.|++++|...|++..+.... |.. .++..+-.++.
T Consensus        39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~  118 (235)
T TIGR03302        39 EAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY  118 (235)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence            66678899999999999998754  32 1   35677888999999999999999999765322 221 13444444444


Q ss_pred             cC--------CCchhHHHHHHHHHHhCCCcch-HHH-----------------HHHHHHHHhcCChHHHHHHHHhccC--
Q 045063           88 AL--------PAPERGKQVHALMIKGGTDSEP-VVK-----------------TALMDMYSKYGLLGESVEAFKEIEF--  139 (175)
Q Consensus        88 ~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~--  139 (175)
                      +.        |+.+.|...++...+..  |+. ..+                 -.+...|.+.|++++|...++....  
T Consensus       119 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  196 (235)
T TIGR03302       119 NQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY  196 (235)
T ss_pred             HhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence            33        67888999999988753  332 121                 1445678889999999999998763  


Q ss_pred             C----CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          140 K----DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       140 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      |    ....|..+...+.+.|+.++|..+++++..+
T Consensus       197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       197 PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2    2357889999999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.2e-05  Score=61.81  Aligned_cols=153  Identities=12%  Similarity=0.049  Sum_probs=101.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC------CchhH-------------------------------HHHHHHHHhCCCcc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG------DLSSL-------------------------------NSQLFSYTRSRNFP   58 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~------~~~~~-------------------------------~~li~~~~~~g~~~   58 (175)
                      .-.+.....++|.|+.+|+.+...      |..+|                               .++-+-|+-.++++
T Consensus       268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE  347 (559)
T KOG1155|consen  268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE  347 (559)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence            444566778888899999888642      33333                               33334444456778


Q ss_pred             hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           59 ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        59 ~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      .|...|++.++.+. -....|+.+-+=+....+...|.+-+...++- .+.|-..|=.|=.+|.-.+...-|.-.|+...
T Consensus       348 KAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~  425 (559)
T KOG1155|consen  348 KAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL  425 (559)
T ss_pred             HHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence            88888887755421 23347777777777777777777777777664 24456677777777777777777777776654


Q ss_pred             --CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          139 --FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       139 --~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                        +| |...|.+|-.+|.+.++.++|...|+.-..
T Consensus       426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence              33 677777777777777777777777766544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.37  E-value=4.3e-05  Score=64.10  Aligned_cols=154  Identities=10%  Similarity=0.039  Sum_probs=113.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC---------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-----------CCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG---------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-----------NLT   75 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-----------~~~   75 (175)
                      +-++|...++++.|..+++++..+         +......|..+|...+++++|..+.+++.+...           .||
T Consensus       333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn  412 (822)
T PRK14574        333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN  412 (822)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence            888888889999999998887431         222357788888889999999999998876311           122


Q ss_pred             H--h-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHH
Q 045063           76 A--Y-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALL  149 (175)
Q Consensus        76 ~--~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li  149 (175)
                      .  . .+..+...+.-.|++++|++.++.+.... +-|......+.+.+...|..++|.+.++...  .| |..+.-...
T Consensus       413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~  491 (822)
T PRK14574        413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA  491 (822)
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence            2  1 34445666778888999999999887643 4577788888899999999999988887754  44 455666677


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 045063          150 SSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .++...|+++.|..+.+.+.+
T Consensus       492 ~~al~l~e~~~A~~~~~~l~~  512 (822)
T PRK14574        492 ETAMALQEWHQMELLTDDVIS  512 (822)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh
Confidence            777788888888887766644

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.36  E-value=1.2e-06  Score=71.73  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=59.9

Q ss_pred             HHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 045063           62 ALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD  141 (175)
Q Consensus        62 ~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  141 (175)
                      +++..|...|+.|+.+||..++.-||..|+.+.|. +|..|+-.....+...|+.++.+....++.+.+.       +|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            34555666677777777777777777777776666 6666665556666666777776666666666653       566


Q ss_pred             chhHHHHHHHHHhcCChHH
Q 045063          142 VVTWNALLSSFLRHGLAKE  160 (175)
Q Consensus       142 ~~~~~~li~~~~~~g~~~~  160 (175)
                      ..||+.|..+|.++||+..
T Consensus        83 aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             hhHHHHHHHHHHhccchHH
Confidence            6667777777777766544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.36  E-value=2.9e-05  Score=65.06  Aligned_cols=150  Identities=9%  Similarity=0.025  Sum_probs=121.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-C--CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-G--DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      .+......|+.++|.+++.+... .  +...+..+...+.+.|++++|..+|.+..+. -+.+...+..+...+...|++
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~   99 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQY   99 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCH
Confidence            56677789999999999999764 2  4445899999999999999999999998665 233455677788888999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ++|...+++..+.. +.+.. +..+..++...|+.++|...+++..+  | +...+..+...+...|+.+.|++.++..
T Consensus       100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049        100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            99999999998762 34455 88888999999999999999999873  4 4556677788888889999898887743

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.35  E-value=3e-05  Score=67.71  Aligned_cols=92  Identities=8%  Similarity=0.027  Sum_probs=62.8

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~  154 (175)
                      .+..+-..+.+.|+.++|...++...+.. +.+...+..+...|...|++++|.+.++...+.   +...+..+-..+.+
T Consensus       605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~  683 (1157)
T PRK11447        605 IDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA  683 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence            44445555666777777777777777642 234567777777787888888888777776532   34456666667777


Q ss_pred             cCChHHHHHHHHHHHh
Q 045063          155 HGLAKEAFGVFQAMTR  170 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~~  170 (175)
                      .|+.++|.+++++...
T Consensus       684 ~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        684 LGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            8888888888877654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.34  E-value=1.7e-05  Score=61.45  Aligned_cols=55  Identities=9%  Similarity=0.057  Sum_probs=35.1

Q ss_pred             hhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063           18 IADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL   72 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~   72 (175)
                      ..+...|+++.|...+++..+  | +......+...|.+.|++++|.+++..+.+.+.
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            355566777777777666643  2 455566666777777777777777776665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.33  E-value=6.3e-05  Score=56.06  Aligned_cols=153  Identities=14%  Similarity=0.006  Sum_probs=90.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~   91 (175)
                      +-..+.+.|+.+.|...|++..+  | +...|+.+-..+.+.|++++|.+.|++..+.  .|+ ..+|..+-.++...|+
T Consensus        70 ~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~  147 (296)
T PRK11189         70 RGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGR  147 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence            33456667777777777776543  2 5566777777777777777777777776543  333 3466666666677777


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---C----------------------------
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---K----------------------------  140 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~----------------------------  140 (175)
                      +++|.+.++...+..  |+..........+...++.++|.+.|.....   +                            
T Consensus       148 ~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~  225 (296)
T PRK11189        148 YELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGA  225 (296)
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcC
Confidence            777777777766532  3322111111112334555555555533210   0                            


Q ss_pred             ---------CchhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 045063          141 ---------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRER  172 (175)
Q Consensus       141 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  172 (175)
                               ....|..+-..+.+.|+.++|...|++-.+.+
T Consensus       226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence                     11245556666778888888888888776544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.32  E-value=5.5e-05  Score=53.39  Aligned_cols=155  Identities=10%  Similarity=-0.067  Sum_probs=115.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~   91 (175)
                      |-..|...|++..|...+++..+.   +..+|..+-..|-+.|..+.|.+-|....+.  .|+. .+.|.--..+|..|.
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCC
Confidence            666788889999999888887653   4556788888888889999998888887543  3433 356666666788888


Q ss_pred             chhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      +++|.+.|++....---+ -..+|..+.-+..+.|+++.|...|++-.+.   .....-.+-....+.|+...|...++.
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~  198 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER  198 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence            999998888887643322 2458888888888899999998888887633   445666777777788888888877776


Q ss_pred             HHhcc
Q 045063          168 MTRER  172 (175)
Q Consensus       168 m~~~g  172 (175)
                      ....|
T Consensus       199 ~~~~~  203 (250)
T COG3063         199 YQQRG  203 (250)
T ss_pred             HHhcc
Confidence            65543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.31  E-value=7.8e-06  Score=57.19  Aligned_cols=103  Identities=9%  Similarity=0.110  Sum_probs=87.7

Q ss_pred             hhHHHHHhhhc--cCCCchhHHHHHHHHHhC-----CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC--------
Q 045063           26 YVYTHQVFDEI--SHGDLSSLNSQLFSYTRS-----RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP--------   90 (175)
Q Consensus        26 ~~~a~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~--------   90 (175)
                      +......|++.  ..++..+|..+|..|.+.     |..+=....+..|.+-|+.-|..+|+.||+.+-+..        
T Consensus        30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ  109 (228)
T PF06239_consen   30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ  109 (228)
T ss_pred             ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence            34456777776  567999999999999875     677777888889999999999999999999997743        


Q ss_pred             --------CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063           91 --------APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG  128 (175)
Q Consensus        91 --------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  128 (175)
                              ..+.|..++++|...|+-||..++..+++.|++.+..-
T Consensus       110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~  155 (228)
T PF06239_consen  110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM  155 (228)
T ss_pred             HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence                    35688999999999999999999999999999887643

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.28  E-value=7.8e-05  Score=57.88  Aligned_cols=143  Identities=13%  Similarity=0.026  Sum_probs=114.5

Q ss_pred             CCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063           22 LPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQV   98 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~   98 (175)
                      +..+.+...++++.++.   .+......+...+.+.|+.++|.+++.+..+.  .|+.  -..++.+....++++++.+.
T Consensus       241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~  316 (398)
T PRK10747        241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKV  316 (398)
T ss_pred             HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHH
Confidence            34456667777777764   37778899999999999999999999998774  3333  11234445566899999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           99 HALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        99 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      .+...+.. +-|.....++-..+.+.|++++|.+.|+...  .|+...|-.|-..+.+.|+.++|.+++++=.
T Consensus       317 ~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        317 LRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99888753 3455678889999999999999999999986  6788888999999999999999999998753

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.26  E-value=4.7e-05  Score=58.65  Aligned_cols=120  Identities=8%  Similarity=0.066  Sum_probs=97.2

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063           45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY  124 (175)
Q Consensus        45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  124 (175)
                      ..++..+...++++.|.++|+++.+..  |+.  ...+...+...++..+|.+++.+..+. .+.+........+.+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence            344455555799999999999997765  443  345677777778888888888888864 345677888888999999


Q ss_pred             CChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          125 GLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       125 g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++++.|..+.++..  .| +..+|..|..+|.+.|+++.|+..++.+.
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999987  45 56699999999999999999999998875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.25  E-value=0.00015  Score=48.17  Aligned_cols=125  Identities=13%  Similarity=0.083  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH--hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH--HHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA--YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV--VKTAL  117 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l  117 (175)
                      ..|..++..+ ..++...+...++.+....-.-..  ...-.+-..+...|++++|...|+........|+..  ..-.+
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            3466777777 478888888889998776322212  234445577788999999999999999876333332  44556


Q ss_pred             HHHHHhcCChHHHHHHHHhccCC--CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063          118 MDMYSKYGLLGESVEAFKEIEFK--DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus       118 i~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ...+...|++++|...++....+  ....+...-..|.+.|+.++|...|++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            78888999999999999876543  344667777889999999999998875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=4.6e-05  Score=58.93  Aligned_cols=149  Identities=13%  Similarity=0.181  Sum_probs=87.4

Q ss_pred             CCCChhHHHHHhhhccCCCchhHHHHH---HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063           22 LPKRYVYTHQVFDEISHGDLSSLNSQL---FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQV   98 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~   98 (175)
                      ..|+++.|.+.+++....|...-..|.   -.+-+.|++++|++.|-.+..- +.-+..+.--+-+.|-...++..|.++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            468888888888887766554432222   1344567777777777665321 111222333333444444444444444


Q ss_pred             HHHHHHh---------------------------------CCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCch
Q 045063           99 HALMIKG---------------------------------GTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVV  143 (175)
Q Consensus        99 ~~~m~~~---------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~  143 (175)
                      +-+....                                 =++-+..+...|...|....-++++...|+...  +|+.+
T Consensus       581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence            3332221                                 123344455555555555555666666666543  78999


Q ss_pred             hHHHHHHHHH-hcCChHHHHHHHHHHHhc
Q 045063          144 TWNALLSSFL-RHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       144 ~~~~li~~~~-~~g~~~~a~~~~~~m~~~  171 (175)
                      -|..||..|. |+|+..+|++++++..+.
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            9999987665 789999999999987653

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.21  E-value=2.3e-05  Score=60.77  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=88.5

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL  117 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  117 (175)
                      +.....+++..+....+.+.+.+++.+.+..  ....-..|..+++..|.+.|..+.+..++..=...|+=||..++|.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            4555677777777777778888888888766  33333345668888888888888888888888888888888999999


Q ss_pred             HHHHHhcCChHHHHHHHHhccCC----CchhHHHHHHHHHhc
Q 045063          118 MDMYSKYGLLGESVEAFKEIEFK----DVVTWNALLSSFLRH  155 (175)
Q Consensus       118 i~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~  155 (175)
                      |+.+.+.|++..|.++...|...    +..|+..-+.+|.+-
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999988888888887633    556676666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR00540 hemY_coli hemY protein

Probab=98.20  E-value=0.00017  Score=56.13  Aligned_cols=153  Identities=10%  Similarity=-0.048  Sum_probs=100.0

Q ss_pred             hhhcCCCChhHHHHHhhhccC--CCc--hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           18 IADALPKRYVYTHQVFDEISH--GDL--SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      .+..+.|+++.|.+.+.+..+  |+.  ...-.....+...|+++.|.+.++.+.+.. +-+......+...+.+.|+++
T Consensus       126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence            445566888888888887532  332  233445677777888888888888887664 223346777788888888888


Q ss_pred             hHHHHHHHHHHhCCCcchHH-------HHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVV-------KTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      ++...+..+.+.+..+....       +..+++.-......+...++++..++   .+...+-.+...+...|+.+.|.+
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~  284 (409)
T TIGR00540       205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE  284 (409)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence            88888888887765333222       11112111222333455555555543   367778888888888888888888


Q ss_pred             HHHHHHhc
Q 045063          164 VFQAMTRE  171 (175)
Q Consensus       164 ~~~~m~~~  171 (175)
                      ++++..+.
T Consensus       285 ~l~~~l~~  292 (409)
T TIGR00540       285 IIFDGLKK  292 (409)
T ss_pred             HHHHHHhh
Confidence            88887653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.18  E-value=8.6e-05  Score=49.38  Aligned_cols=106  Identities=10%  Similarity=0.054  Sum_probs=78.0

Q ss_pred             HHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc
Q 045063           31 QVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE  110 (175)
Q Consensus        31 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~  110 (175)
                      .+|++..+-+...+...-.++.+.|++++|...|....... +.+...|..+-.++.+.|++++|...|+...+.. +.+
T Consensus        14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~   91 (144)
T PRK15359         14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASH   91 (144)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence            44555444333345556777788888888888888875542 2355677888888888888888888888888743 346


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          111 PVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ...+..+-.++.+.|++++|...|+...
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al  119 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAI  119 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6788888888888888888888888865

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.17  E-value=0.00018  Score=50.46  Aligned_cols=97  Identities=5%  Similarity=-0.058  Sum_probs=44.0

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH-hcCCC--chhHHHHHHHHHHhCCCcchHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC-SALPA--PERGKQVHALMIKGGTDSEPVVKTA  116 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~-~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~  116 (175)
                      |...|..+-..|...|++++|...|++..+... -+...+..+-.++ .+.|+  .++|.+++++..+.. +-+...+..
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~  149 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALML  149 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHH
Confidence            444455555555555555555555554433211 1222333333332 33333  255555555555432 123344455


Q ss_pred             HHHHHHhcCChHHHHHHHHhcc
Q 045063          117 LMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       117 li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +...+.+.|++++|...|+.+.
T Consensus       150 LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        150 LASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555555555555555543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=2.3e-05  Score=62.49  Aligned_cols=155  Identities=9%  Similarity=-0.009  Sum_probs=109.5

Q ss_pred             CCcchhhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh---HHHHHH
Q 045063           11 PAKTCISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT---FTPVLG   84 (175)
Q Consensus        11 ~~~~~ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t---~~~ll~   84 (175)
                      .+|.++=++|.-.++.+.|.+.|++..+  | ...+|+.+-.-+....+++.|..-|...    +..|...   |--+--
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~  497 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYGLGT  497 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHhhhh
Confidence            4566688899999999999999998764  3 5667777777777788888888888776    3344444   444456


Q ss_pred             HHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHH
Q 045063           85 ACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEA  161 (175)
Q Consensus        85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a  161 (175)
                      .+.+.++.+.|+-.|+...+-+ +.+.+....+-..+-+.|+.|+|.+++++..   ..|+..--.....+...++.++|
T Consensus       498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea  576 (638)
T KOG1126|consen  498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA  576 (638)
T ss_pred             heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence            6778888888888887776532 2345566777777788888888888888754   23555544455556666777777


Q ss_pred             HHHHHHHHh
Q 045063          162 FGVFQAMTR  170 (175)
Q Consensus       162 ~~~~~~m~~  170 (175)
                      ++.++++++
T Consensus       577 l~~LEeLk~  585 (638)
T KOG1126|consen  577 LQELEELKE  585 (638)
T ss_pred             HHHHHHHHH
Confidence            777777654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.15  E-value=0.00013  Score=58.43  Aligned_cols=148  Identities=7%  Similarity=0.031  Sum_probs=94.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~   91 (175)
                      |-..|...|++|.|...+++..+  |+ ...||.|-.++-..|+..+|.+.|...+..  -|+. .+.+.|-+.+...|.
T Consensus       292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~  369 (966)
T KOG4626|consen  292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGK  369 (966)
T ss_pred             eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcc
Confidence            55667788888888888887653  32 446888888888888888888888776543  2332 366677777777777


Q ss_pred             chhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhcc--CCC-chhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIE--FKD-VVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ++.|..+|.....  +.|+. ..++.|...|-..|.+++|...+++..  +|+ ...|+-+-..|-..|+++.|.+.+.+
T Consensus       370 ~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r  447 (966)
T KOG4626|consen  370 IEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR  447 (966)
T ss_pred             chHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence            7777777776655  34443 366777777777777777777777654  232 22344444444444444444444433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.15  E-value=0.00012  Score=58.09  Aligned_cols=155  Identities=11%  Similarity=0.067  Sum_probs=117.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC-------Cchh----HHHHHHHHHhCCCcchHHHHHHHHHhc-----C-CCCCH-h
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG-------DLSS----LNSQLFSYTRSRNFPATWALFCYMHST-----C-LNLTA-Y   77 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~-------~~~~----~~~li~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~-~   77 (175)
                      |...|...|+++.|..+|.+..+-       +...    -+.+-..|...+++.+|..+|.++..-     | ..|.+ .
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            888999999999999999986431       2222    344556788889999999999998642     2 22333 3


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHH---h--CC-CcchH-HHHHHHHHHHhcCChHHHHHHHHhcc-------CC-C-
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIK---G--GT-DSEPV-VKTALMDMYSKYGLLGESVEAFKEIE-------FK-D-  141 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~---~--~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~-------~~-~-  141 (175)
                      +++.|-..|.+.|++++|+..+++..+   .  |. .|.+. .++.+...+...+++++|..+++...       .+ + 
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~  364 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV  364 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence            788888889999999999888877652   1  22 23333 56888888999999999988887654       22 3 


Q ss_pred             --chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          142 --VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       142 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                        ..+++.|-..|...|++++|.+++++...
T Consensus       365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence              24799999999999999999999998754

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.12  E-value=0.00057  Score=50.97  Aligned_cols=150  Identities=6%  Similarity=-0.182  Sum_probs=110.6

Q ss_pred             hhhhcCCCChhHHHHHhhhccC-----C--CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063           17 SIADALPKRYVYTHQVFDEISH-----G--DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL   89 (175)
Q Consensus        17 l~~~~~~~~~~~a~~~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~   89 (175)
                      .......+..+.+..-+.++..     |  ....|..+-..|.+.|+.++|...|.+..+.. +-+...|+.+-..+...
T Consensus        33 ~~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~  111 (296)
T PRK11189         33 AVPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQA  111 (296)
T ss_pred             ccccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC
Confidence            3344445666667776666543     1  23457777788999999999999999987653 23456899999999999


Q ss_pred             CCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC--CCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF--KDVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      |++++|.+.++...+.  .|+ ...|..+..++...|++++|.+.|+...+  |+..........+...++.++|.+.|+
T Consensus       112 g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~  189 (296)
T PRK11189        112 GNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLK  189 (296)
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence            9999999999999874  454 56888899999999999999999998763  433222222333446778999999997


Q ss_pred             HHH
Q 045063          167 AMT  169 (175)
Q Consensus       167 ~m~  169 (175)
                      +..
T Consensus       190 ~~~  192 (296)
T PRK11189        190 QRY  192 (296)
T ss_pred             HHH
Confidence            644

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.11  E-value=0.0001  Score=58.99  Aligned_cols=152  Identities=8%  Similarity=0.037  Sum_probs=91.7

Q ss_pred             chhhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcC
Q 045063           14 TCISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSAL   89 (175)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~   89 (175)
                      +.|-+++-.-|++.+|...+.+...   .-..+-+.|-..|.+.|.+++|..+|....+-  .|. +..++.|-..+-+.
T Consensus       324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqq  401 (966)
T KOG4626|consen  324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQ  401 (966)
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhc
Confidence            3366677777777777777776542   23445666666777777777777776665432  222 23566666666666


Q ss_pred             CCchhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccCCCc---hhHHHHHHHHHhcCChHHHHHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEFKDV---VTWNALLSSFLRHGLAKEAFGVF  165 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~a~~~~  165 (175)
                      |++++|...|.+.++  ++|+. ..++.+=..|-..|+++.|.+.+.....-|.   ...+-|-+.|--.|++.+|.+-+
T Consensus       402 gnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  402 GNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             ccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence            666666666666654  55554 3566666666666666666666655543322   24555566666666666666666


Q ss_pred             HHHH
Q 045063          166 QAMT  169 (175)
Q Consensus       166 ~~m~  169 (175)
                      ++-.
T Consensus       480 ~~aL  483 (966)
T KOG4626|consen  480 RTAL  483 (966)
T ss_pred             HHHH
Confidence            5543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.11  E-value=0.00015  Score=53.67  Aligned_cols=127  Identities=12%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcC-CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM  120 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  120 (175)
                      .+|..++...-+.+.++.|.++|.+.++.+ .........+.+... ..++.+.|..+|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            457777777777777777788887776442 222222333333322 235556677777777765 55666777777777


Q ss_pred             HHhcCChHHHHHHHHhccCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          121 YSKYGLLGESVEAFKEIEFK------DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       121 ~~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+.|+.+.|..+|+.....      -...|..+|.-=.+.|+.+.+..+.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777877788777776632      234677777777777777777777766654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.11  E-value=0.0002  Score=53.08  Aligned_cols=151  Identities=10%  Similarity=0.086  Sum_probs=74.7

Q ss_pred             hcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh----hHHHHHHHHhcCCCc
Q 045063           20 DALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY----TFTPVLGACSALPAP   92 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~----t~~~ll~~~~~~~~~   92 (175)
                      |...|-+|.|+.+|..+.+.+   ...---|+..|-+..+++.|.+.=++..+.+-.+..+    -|.-+-.......++
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            334444444444444444321   1223344444444455555555444443332222211    122222222333444


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDV----VTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +.|..++.+..+.. +..+..--.+-+.+...|+++.|.+.++.+.+.|.    .+-..|..+|.+.|+.++....+.++
T Consensus       197 d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         197 DRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            55555555444322 11122222233555667777777777777665543    25667777888888888888887777


Q ss_pred             Hhc
Q 045063          169 TRE  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       276 ~~~  278 (389)
T COG2956         276 MET  278 (389)
T ss_pred             HHc
Confidence            654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.05  E-value=0.0002  Score=56.87  Aligned_cols=154  Identities=10%  Similarity=0.053  Sum_probs=120.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC----------CCch-hHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCC----Hh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH----------GDLS-SLNSQLFSYTRSRNFPATWALFCYMHST---CLNLT----AY   77 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~----~~   77 (175)
                      |-.+|++.|++++|...++...+          +.+. .++.+...++..+++++|..++..-.+.   -+.++    ..
T Consensus       289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~  368 (508)
T KOG1840|consen  289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK  368 (508)
T ss_pred             HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence            66789999999999998887532          2222 2788888899999999999999886532   12222    24


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHh----CC--Ccc-hHHHHHHHHHHHhcCChHHHHHHHHhcc------CC---C
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKG----GT--DSE-PVVKTALMDMYSKYGLLGESVEAFKEIE------FK---D  141 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~---~  141 (175)
                      +++.+-..+.+.|++++|+.++...++.    +-  .+. ...++.+-..|.+.+..++|.++|.+-.      .|   |
T Consensus       369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~  448 (508)
T KOG1840|consen  369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD  448 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence            8999999999999999999999988843    12  222 3467888899999999999999998854      23   2


Q ss_pred             -chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          142 -VVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       142 -~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                       ..+|--|...|.+.|+++.|.++.....
T Consensus       449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  449 VTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             3468889999999999999999987765

>TIGR00540 hemY_coli hemY protein

Probab=98.03  E-value=0.00068  Score=52.86  Aligned_cols=141  Identities=13%  Similarity=0.001  Sum_probs=104.5

Q ss_pred             hhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH-HHHHHHHhcCCCchhHHHHHHH
Q 045063           26 YVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF-TPVLGACSALPAPERGKQVHAL  101 (175)
Q Consensus        26 ~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~-~~ll~~~~~~~~~~~a~~~~~~  101 (175)
                      .+...+.++..+.   .+...+..+...+.+.|+.++|.+++.+..+.........+ ....-.....++.+.+...++.
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~  324 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK  324 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence            4455556666654   37888999999999999999999999999775332221111 2222222345677888888877


Q ss_pred             HHHhCCCcch---HHHHHHHHHHHhcCChHHHHHHHH--hc--cCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          102 MIKGGTDSEP---VVKTALMDMYSKYGLLGESVEAFK--EI--EFKDVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       102 m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~--~m--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ..+.  .|+.   ....++-..+.+.|++++|.+.|+  ..  ..||...+..+...+.+.|+.++|.+++++-
T Consensus       325 ~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       325 QAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7764  3443   456678888899999999999999  34  2688888999999999999999999999874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.02  E-value=0.00016  Score=48.05  Aligned_cols=93  Identities=10%  Similarity=-0.095  Sum_probs=79.7

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~  154 (175)
                      .+...-..+.+.|++++|...|+...... +.+...|..+-.++.+.|++++|...|+....  | +...|..+-.++.+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            35556677889999999999999998753 34677999999999999999999999999874  3 67789999999999


Q ss_pred             cCChHHHHHHHHHHHhc
Q 045063          155 HGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~~~  171 (175)
                      .|+.++|...|++..+.
T Consensus       105 ~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        105 MGEPGLAREAFQTAIKM  121 (144)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999987653

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.01  E-value=5.7e-05  Score=58.63  Aligned_cols=109  Identities=9%  Similarity=-0.019  Sum_probs=90.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-C-----CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-G-----DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL   89 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~   89 (175)
                      +++.+....++|.+..++-+.+. |     -..+..++|.-|.+.|..+.++.++..=...|+-||..|||.||+.+.+.
T Consensus        72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~  151 (429)
T PF10037_consen   72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK  151 (429)
T ss_pred             HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence            77888888888889888887764 2     12344699999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY  124 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  124 (175)
                      |++..|.++..+|...+...+..|+.--+.++.+.
T Consensus       152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999998766666666666555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.00  E-value=0.0006  Score=47.85  Aligned_cols=146  Identities=8%  Similarity=-0.010  Sum_probs=111.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      -+..|...|+++.+..-...+..+. .       .+...++.+++...+....+. -+.|...|..+-..+...|+.++|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A   92 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNA   92 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3456888899988866654433332 1       122366677777777776554 335666999999999999999999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHH-HHhcCC--hHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDM-YSKYGL--LGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ...+++..+.. +-+...+..+..+ |...|+  .++|.+++++..+  | +...+..+-..+...|++++|...|+++.
T Consensus        93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999998854 3366788888886 467777  5999999999873  3 67789999999999999999999999987


Q ss_pred             hc
Q 045063          170 RE  171 (175)
Q Consensus       170 ~~  171 (175)
                      +.
T Consensus       172 ~l  173 (198)
T PRK10370        172 DL  173 (198)
T ss_pred             hh
Confidence            63

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.00  E-value=0.00053  Score=48.58  Aligned_cols=156  Identities=8%  Similarity=-0.113  Sum_probs=125.2

Q ss_pred             chhhhhhcCCCChhHHHHHhhhcc---CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcC
Q 045063           14 TCISIADALPKRYVYTHQVFDEIS---HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSAL   89 (175)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~   89 (175)
                      ..+-..|-+.|+.+.|.+-|++..   ..+..+-|..-.-+|..|++++|...|++.....--+. ..||..+.-|..+.
T Consensus        73 ~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~  152 (250)
T COG3063          73 LVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA  152 (250)
T ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc
Confidence            348888999999999999999864   34777889999999999999999999999887743333 35899999999999


Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      |.+..|+..+++-.+.. +-.....-.+.....+.|++-.|...++.....   +..+.-..|.---+.|+.+.+.++=.
T Consensus       153 gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~  231 (250)
T COG3063         153 GQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQA  231 (250)
T ss_pred             CCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999998753 223457778888889999999999999887644   44455556776678899888877655


Q ss_pred             HHHh
Q 045063          167 AMTR  170 (175)
Q Consensus       167 ~m~~  170 (175)
                      ++.+
T Consensus       232 qL~r  235 (250)
T COG3063         232 QLQR  235 (250)
T ss_pred             HHHH
Confidence            5543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=2.2e-05  Score=62.56  Aligned_cols=148  Identities=13%  Similarity=0.061  Sum_probs=115.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC------------------------------------C-CchhHHHHHHHHHhCCCcc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH------------------------------------G-DLSSLNSQLFSYTRSRNFP   58 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~------------------------------------~-~~~~~~~li~~~~~~g~~~   58 (175)
                      +=.+|-..++++.|+++|+.+..                                    | ...+|.++-++|.-.++++
T Consensus       359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~  438 (638)
T KOG1126|consen  359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD  438 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence            55677788999999999998753                                    1 3567888888998889999


Q ss_pred             hHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHH---HHHHHHhcCChHHHHHHH
Q 045063           59 ATWALFCYMHSTCLNL-TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTA---LMDMYSKYGLLGESVEAF  134 (175)
Q Consensus        59 ~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~  134 (175)
                      .|++.|++..+  +.| ...+|+.+-.=+....+++.|...|...+    ..|...||+   +--.|.|.++++.|+..|
T Consensus       439 ~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f  512 (638)
T KOG1126|consen  439 TAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHF  512 (638)
T ss_pred             HHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence            99999988743  445 44577777777777788888888888764    455555554   556788999999999999


Q ss_pred             HhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          135 KEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       135 ~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +...+   .|.+.-..+...+-+.|+-++|++++++-.
T Consensus       513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             HhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            98763   367777777778889999999999998854

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.98  E-value=0.00014  Score=45.74  Aligned_cols=78  Identities=15%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCC--------hHHHHHHHHhcc----CCCchh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGT-DSEPVVKTALMDMYSKYGL--------LGESVEAFKEIE----FKDVVT  144 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~----~~~~~~  144 (175)
                      |-..-+..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++...        +-+...+++.|.    +|+..|
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            445667777778999999999999999999 9999999999999887542        334566677665    899999


Q ss_pred             HHHHHHHHHhc
Q 045063          145 WNALLSSFLRH  155 (175)
Q Consensus       145 ~~~li~~~~~~  155 (175)
                      ||+++.++.+.
T Consensus       107 Ynivl~~Llkg  117 (120)
T PF08579_consen  107 YNIVLGSLLKG  117 (120)
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.97  E-value=0.00058  Score=51.86  Aligned_cols=147  Identities=9%  Similarity=0.043  Sum_probs=101.0

Q ss_pred             hhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCC----CcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCC
Q 045063           19 ADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSR----NFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALP   90 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~   90 (175)
                      .+...|+++.|.+.+++..+  | +...++. ...+...|    ....+.+.+..  ..+..|+.. ....+-..+...|
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence            45677899999999988653  3 3334443 22333333    44444444433  122333332 4445556778899


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC-----CCc--hhHHHHHHHHHhcCChHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF-----KDV--VTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~--~~~~~li~~~~~~g~~~~a~~  163 (175)
                      ++++|...+++..+.. +.+...+..+...|...|++++|...++...+     ++.  ..|..+...+...|+.++|..
T Consensus       129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  207 (355)
T cd05804         129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA  207 (355)
T ss_pred             CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999998853 33456788888999999999999999988663     222  346677888899999999999


Q ss_pred             HHHHHH
Q 045063          164 VFQAMT  169 (175)
Q Consensus       164 ~~~~m~  169 (175)
                      ++++..
T Consensus       208 ~~~~~~  213 (355)
T cd05804         208 IYDTHI  213 (355)
T ss_pred             HHHHHh
Confidence            999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.96  E-value=0.0012  Score=50.10  Aligned_cols=149  Identities=12%  Similarity=0.003  Sum_probs=118.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      ++.=....+..+.-...++..+.   .+...-.+++.-+.+.|+.++|.++.++-.+.+..|+    -+.+-.+.+.++.
T Consensus       235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~  310 (400)
T COG3071         235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDP  310 (400)
T ss_pred             HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCc
Confidence            44444555555555556666663   3677778899999999999999999999998888888    4556677888888


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +.-.+..++-.+. .+-+...+.+|=..|.+.+.+.+|.+.|+.-.  .|+..+|+.+-.+|.+.|+..+|.+..++-.
T Consensus       311 ~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         311 EPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            8777777766643 22344788899999999999999999999765  6789999999999999999999999988754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.00058  Score=52.97  Aligned_cols=157  Identities=12%  Similarity=0.008  Sum_probs=133.1

Q ss_pred             CcchhhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           12 AKTCISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      +...+-+-|+-.++.+.|...|+...+   .-...|+.|-.-|....+...|.+-|.....- -+.|...|-.|-++|.-
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHH
Confidence            334477888889999999999998754   46778999999999999999999999998654 33466699999999999


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHH
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVF  165 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~  165 (175)
                      .+.+.-|.-.|++..+.. +-|...|.+|-++|.+.++.++|..-|.....-   +...+..|-+.|-+.++..+|.+.|
T Consensus       411 m~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y  489 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY  489 (559)
T ss_pred             hcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence            999999999999988742 456789999999999999999999999987643   4478999999999999999999988


Q ss_pred             HHHHh
Q 045063          166 QAMTR  170 (175)
Q Consensus       166 ~~m~~  170 (175)
                      ++-.+
T Consensus       490 ek~v~  494 (559)
T KOG1155|consen  490 EKYVE  494 (559)
T ss_pred             HHHHH
Confidence            87654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.94  E-value=0.00064  Score=50.51  Aligned_cols=156  Identities=13%  Similarity=0.030  Sum_probs=100.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-CCchh------HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-GDLSS------LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-~~~~~------~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      |=+.|-+.|.+|.|..+-..+-. ||...      ---|-.-|...|-++.|.++|......|. .-......|+..|-+
T Consensus        75 LGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~  153 (389)
T COG2956          75 LGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQA  153 (389)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHH
Confidence            55667777777777777666544 33322      22344556667777888888877755422 223356667777777


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchH----HHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHH
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPV----VKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEA  161 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a  161 (175)
                      ..++++|..+-+++.+.+-.+...    -|.-|...+.-..+++.|.+++....+  | .+..--++-+.+...|+++.|
T Consensus       154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~A  233 (389)
T COG2956         154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKA  233 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHH
Confidence            888888888877777665444432    456666666677778888777777653  2 222333445556788888888


Q ss_pred             HHHHHHHHhcc
Q 045063          162 FGVFQAMTRER  172 (175)
Q Consensus       162 ~~~~~~m~~~g  172 (175)
                      ++.++...+++
T Consensus       234 V~~~e~v~eQn  244 (389)
T COG2956         234 VEALERVLEQN  244 (389)
T ss_pred             HHHHHHHHHhC
Confidence            88888877665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.94  E-value=0.00072  Score=52.56  Aligned_cols=114  Identities=11%  Similarity=0.010  Sum_probs=70.2

Q ss_pred             hcCCCChhHHHHHhhhcc--CC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhH
Q 045063           20 DALPKRYVYTHQVFDEIS--HG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a   95 (175)
                      +...|+++.|++.++.+.  .| |...+......+.+.|+.++|.+.++.+...  .|+ ....-.+-+++.+.|++.+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence            345566666666666654  24 3444455556666777777777777776443  233 34555556666677777777


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      ..++...... .+-|...|..|..+|...|+..++.....+
T Consensus       394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            7666666554 345666777777777777776666655554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.92  E-value=0.00049  Score=44.79  Aligned_cols=97  Identities=11%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +......+...+.+.|++++|.+.|+.....+ +.+...+..+-.++.+.|++++|...+++..+.. +.+...+-.+-.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~   93 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE   93 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            33445566667777777888887777775543 2345566667777777777777777777766543 334556666677


Q ss_pred             HHHhcCChHHHHHHHHhcc
Q 045063          120 MYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~  138 (175)
                      .|...|++++|...|+...
T Consensus        94 ~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        94 CLLALGEPESALKALDLAI  112 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            7777777777777777665

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.92  E-value=0.00072  Score=55.98  Aligned_cols=127  Identities=14%  Similarity=0.059  Sum_probs=102.0

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTAL  117 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l  117 (175)
                      +...+-.|-....+.|++++|..+++...+  +.|+.. ....+..++.+.+++++|....++....  .|+ ......+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~  160 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE  160 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence            466677788888889999999999998844  456655 7788888899999999999999998874  344 4566777


Q ss_pred             HHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          118 MDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       118 i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      -.++.+.|++++|..+|++...++   ...|-.+-.++-..|+.++|...|++-.+
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            788889999999999999987553   45677777788889999999999988754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.88  E-value=0.00026  Score=52.63  Aligned_cols=121  Identities=8%  Similarity=0.054  Sum_probs=90.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHh----CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTR----SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~   90 (175)
                      .+.+|.+.+++|.|.+.++.|++- +-.+-.-+..++..    ...+.+|..+|+++... ..++..+.+.+..+....|
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~  215 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG  215 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC
Confidence            678889999999999999999863 22333334444333    34799999999998654 6678889999999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh-HHHHHHHHhcc
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL-GESVEAFKEIE  138 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~  138 (175)
                      ++++|.+++.+..... +-+..+...++-+....|+. +.+.+.+.++.
T Consensus       216 ~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  216 HYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             -HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            9999999999876543 44667888888888888887 77888998877

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.87  E-value=0.00084  Score=52.39  Aligned_cols=141  Identities=9%  Similarity=0.082  Sum_probs=80.9

Q ss_pred             CChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063           24 KRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHA  100 (175)
Q Consensus        24 ~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~  100 (175)
                      +++..|+++|+....   .+...|-..+.+=.++..+.-|..+|++....-.+.|- -|---+..=-..|++..|+++|+
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHH
Confidence            455566666666543   35556666666666666666666666666444222222 22222222234566666666666


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063          101 LMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus       101 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      .-.+  ..|+...|.+.|+.-.+-...+.|..+++...  -|++.+|--...-=-++|++..|..+|..
T Consensus       166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer  232 (677)
T KOG1915|consen  166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER  232 (677)
T ss_pred             HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            6554  45666666666666666666666666666654  45666665555555556665555555544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.86  E-value=0.0016  Score=46.87  Aligned_cols=125  Identities=14%  Similarity=0.012  Sum_probs=89.9

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      |...-+..+....+.|++.+|...|.+...- -++|...|+.+--+|-+.|+.+.|+.-|.+..+.- .-+....|.+.-
T Consensus        99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm  176 (257)
T COG5010          99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGM  176 (257)
T ss_pred             cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHH
Confidence            4444555777778888888888888887443 34566688888888888888888888888877642 234456778888


Q ss_pred             HHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063          120 MYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      .|.-.|++++|..++..-.   ..|..+-.-+--.-...|++++|..+-.
T Consensus       177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            8888888888888887754   2266666666666678888888877643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.84  E-value=0.0003  Score=41.65  Aligned_cols=90  Identities=13%  Similarity=0.036  Sum_probs=44.2

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063           45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY  124 (175)
Q Consensus        45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  124 (175)
                      ..+...+...|++++|.+.|.+..+.. +.+...+..+-.++...+++++|...++...+.. +.+...+..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            344445555566666666666554431 1122344444555555555555555555554432 12223445555555555


Q ss_pred             CChHHHHHHHHh
Q 045063          125 GLLGESVEAFKE  136 (175)
Q Consensus       125 g~~~~a~~~~~~  136 (175)
                      |++++|...+..
T Consensus        82 ~~~~~a~~~~~~   93 (100)
T cd00189          82 GKYEEALEAYEK   93 (100)
T ss_pred             HhHHHHHHHHHH
Confidence            555555555544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.84  E-value=0.00073  Score=43.97  Aligned_cols=92  Identities=9%  Similarity=0.009  Sum_probs=61.2

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~  154 (175)
                      ....+...+.+.|+.++|...++.....+ +.+...|..+...|.+.|++++|...++...+  | +...|..+-..|..
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            34455566667777777777777776643 33556777777777777777777777776642  2 44556666667777


Q ss_pred             cCChHHHHHHHHHHHh
Q 045063          155 HGLAKEAFGVFQAMTR  170 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~~  170 (175)
                      .|+.++|...|++..+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            7777777777776554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.00036  Score=50.43  Aligned_cols=117  Identities=11%  Similarity=-0.004  Sum_probs=72.3

Q ss_pred             hhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh----cCCCch
Q 045063           18 IADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS----ALPAPE   93 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~----~~~~~~   93 (175)
                      ..|++.|++++|.+....  -.+......=...+.|..+++.|.+..++|.+.   -+..|.+-|-+++.    ..+...
T Consensus       116 ~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q  190 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ  190 (299)
T ss_pred             HHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence            356677777777777655  223333333344555666677777777777544   23345554444443    334567


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK  140 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  140 (175)
                      .|.-+|++|.+. ..|+..+.+-..-+....|++++|..++++...+
T Consensus       191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            777777777543 5677777777777777777777777777776544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.80  E-value=0.00014  Score=43.55  Aligned_cols=79  Identities=14%  Similarity=0.153  Sum_probs=42.4

Q ss_pred             CCCchhHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHH
Q 045063           89 LPAPERGKQVHALMIKGGT-DSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVF  165 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~  165 (175)
                      .|+++.|..+++++.+... .++...+-.+..+|.+.|++++|.++++...  ..+....-.+-.+|.+.|++++|.+.|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3556666666666665432 1233444446666667777777766665521  112233334455566667777776666


Q ss_pred             HH
Q 045063          166 QA  167 (175)
Q Consensus       166 ~~  167 (175)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.78  E-value=9.8e-05  Score=54.92  Aligned_cols=120  Identities=8%  Similarity=-0.083  Sum_probs=81.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCchhH-HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDLSSL-NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      |-.+|.+..+++.|..+|.+-.+  |.-+|| .-+-..+-..+..++|.++|+...+. -+.+.....++-..+.-.+++
T Consensus       262 LskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~P  340 (478)
T KOG1129|consen  262 LSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNP  340 (478)
T ss_pred             HHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCCh
Confidence            55566666777777776666543  333333 33445555566777777777776544 223444566666667777889


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      |-|...+.++.+.|+ .+...|+.+--++.-.+++|-+..-|++.
T Consensus       341 E~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA  384 (478)
T KOG1129|consen  341 EMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA  384 (478)
T ss_pred             HHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence            999999999999886 47788888888888888888777766654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.78  E-value=0.00051  Score=40.62  Aligned_cols=92  Identities=12%  Similarity=0.109  Sum_probs=74.8

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhc
Q 045063           79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRH  155 (175)
Q Consensus        79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~  155 (175)
                      +..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.++....   .+..+|..+...+...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            4455667778899999999999987753 23447788899999999999999999988653   3556788888999999


Q ss_pred             CChHHHHHHHHHHHhc
Q 045063          156 GLAKEAFGVFQAMTRE  171 (175)
Q Consensus       156 g~~~~a~~~~~~m~~~  171 (175)
                      |+.+.|...+++..+.
T Consensus        82 ~~~~~a~~~~~~~~~~   97 (100)
T cd00189          82 GKYEEALEAYEKALEL   97 (100)
T ss_pred             HhHHHHHHHHHHHHcc
Confidence            9999999999887654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.00058  Score=49.49  Aligned_cols=170  Identities=9%  Similarity=-0.025  Sum_probs=127.2

Q ss_pred             chhHHhhcCCCcchhhhhhcCCCChhHHHHHhhhccCC--C--------chhHHHHHHHHHhCCCcchHHHHHHHHHhcC
Q 045063            2 LSFIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHG--D--------LSSLNSQLFSYTRSRNFPATWALFCYMHSTC   71 (175)
Q Consensus         2 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~   71 (175)
                      |+.+.+..-.||++|...+.-...++.....|+.-..|  .        ...-++++.++.-.|.+.-.++++++.++..
T Consensus       128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~  207 (366)
T KOG2796|consen  128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY  207 (366)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence            45666777788888888887777777777776654332  2        3345777788888899999999999998877


Q ss_pred             CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH-----HHHHhcCChHHHHHHHHhccCC---Cch
Q 045063           72 LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM-----DMYSKYGLLGESVEAFKEIEFK---DVV  143 (175)
Q Consensus        72 ~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~---~~~  143 (175)
                      .+-+.+-...+....-+.|+.+.|...|+...+..-+.|..+++.++     ..|.-.+++..|...++++...   |.+
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            67778888888888999999999999999888765556665555555     4455677888888888887744   444


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .-|.---+..-.|+...|.+.++.|.+.
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4554444455678899999999988765

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.77  E-value=0.00012  Score=54.08  Aligned_cols=123  Identities=12%  Similarity=0.044  Sum_probs=92.1

Q ss_pred             cchhhhhhcCCCChhHHHHHhhhccCCCchhH-----HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh
Q 045063           13 KTCISIADALPKRYVYTHQVFDEISHGDLSSL-----NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS   87 (175)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~   87 (175)
                      |..++...-+.+.++.|+++|.+..+.+..+|     .++|+.+ -.++.+.|.++|+...+. +.-+..-|..-++.+.
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence            44466777778889999999999986543333     3333222 245666799999998776 5566677888889999


Q ss_pred             cCCCchhHHHHHHHHHHhCCCcch---HHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           88 ALPAPERGKQVHALMIKGGTDSEP---VVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +.++.+.++.+|++.... +.++.   ..|...++.=.+.|+.+.+..+.+.+.
T Consensus        82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~  134 (280)
T PF05843_consen   82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE  134 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999865 44443   599999999999999999999888876

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.72  E-value=0.001  Score=44.12  Aligned_cols=118  Identities=8%  Similarity=-0.040  Sum_probs=85.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchh-HH-----HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHh
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSS-LN-----SQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACS   87 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~-~~-----~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~   87 (175)
                      ++..+ ..++.+.+...++.+......+ |.     .+-..+...|++++|...|+........|+..  ....+-..+.
T Consensus        18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~   96 (145)
T PF09976_consen   18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL   96 (145)
T ss_pred             HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            33334 4788899988888887532221 32     34477888999999999999998876444332  4455677788


Q ss_pred             cCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      ..|++++|...++.....  ......+...-+.|.+.|+.++|...|+.
T Consensus        97 ~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   97 QQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999764332  23344666777999999999999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0003  Score=52.44  Aligned_cols=150  Identities=9%  Similarity=-0.071  Sum_probs=110.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhcc--CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH-HHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEIS--HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF-TPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~-~~ll~~~~~~~~~   92 (175)
                      |=.+|.+.|.+.+|.+.|..-.  .|-+.||-.|-++|-+....+.|+.+|.+-... + |-.+|| .-+-...-..+..
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-f-P~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-F-PFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-C-CchhhhhhhhHHHHHHHHhH
Confidence            7778888888888888887753  367778888888888888888888888876544 3 444443 3344455556778


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +++.+++....+.. +.++....++...|.-.++.|-|.+.+.++.   ..+...|+.+--||.-.+++|-++.-|.+-
T Consensus       307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA  384 (478)
T KOG1129|consen  307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA  384 (478)
T ss_pred             HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence            88888888877653 4567778888888888888888888888765   346667777777777888888887777654

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.70  E-value=0.00012  Score=51.38  Aligned_cols=83  Identities=11%  Similarity=0.098  Sum_probs=66.0

Q ss_pred             cCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCC----------------CcchHHHHHHHHHhcCCCCCHhhHH
Q 045063           21 ALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSR----------------NFPATWALFCYMHSTCLNLTAYTFT   80 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g----------------~~~~a~~l~~~m~~~~~~~~~~t~~   80 (175)
                      .+.|.++-....+..|.+    .|..+|+.||.++=+..                .-+-|++++++|...|+.||..|+.
T Consensus        63 ~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~  142 (228)
T PF06239_consen   63 RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQ  142 (228)
T ss_pred             CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            356888888888888874    79999999999998732                2267999999999999999999999


Q ss_pred             HHHHHHhcCCCc-hhHHHHHHHHH
Q 045063           81 PVLGACSALPAP-ERGKQVHALMI  103 (175)
Q Consensus        81 ~ll~~~~~~~~~-~~a~~~~~~m~  103 (175)
                      .|++.+.+.+.+ .+...+.=+|.
T Consensus       143 ~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  143 MLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHH
Confidence            999999988753 44444444444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.70  E-value=0.0012  Score=47.49  Aligned_cols=123  Identities=7%  Similarity=-0.072  Sum_probs=101.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      ......+.|++..|...|++...   +|...|+-+--+|.+.|++++|..-|.+..+-.. -+....+.+--.+.-.|+.
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~  184 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDL  184 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCH
Confidence            44666788999999999999864   5889999999999999999999999999866522 2334667777778888999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK  140 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  140 (175)
                      +.|..++......+ .-|..+-..+.-.-+..|++++|..+...-..+
T Consensus       185 ~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~  231 (257)
T COG5010         185 EDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQELLS  231 (257)
T ss_pred             HHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence            99999999887754 347788888999999999999999988775544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.67  E-value=0.002  Score=53.45  Aligned_cols=131  Identities=10%  Similarity=-0.022  Sum_probs=105.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~   91 (175)
                      |-....+.|.+|+|..+++...+  | +...+-.+..++.+.+++++|+...++....  .|+.. ....+-.++.+.|.
T Consensus        92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~  169 (694)
T PRK15179         92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ  169 (694)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence            66677789999999999999864  5 5666888999999999999999999998654  35544 56666677789999


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALL  149 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li  149 (175)
                      .++|..+|++....+ +-+..++..+-.++-+.|+.++|...|+...   .+...-|+-++
T Consensus       170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            999999999999832 2336799999999999999999999999875   23444555443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.65  E-value=0.003  Score=43.16  Aligned_cols=113  Identities=7%  Similarity=0.000  Sum_probs=78.8

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL  117 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  117 (175)
                      ....|..+-..+...|++++|...|.+..+....+.  ...+..+-..+.+.|+.++|...+.+..+.. +-+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            455678888888899999999999999876543332  3578888888899999999999999888742 2245567777


Q ss_pred             HHHHHhcCC--------------hHHHHHHHHhccCCCchhHHHHHHHHH
Q 045063          118 MDMYSKYGL--------------LGESVEAFKEIEFKDVVTWNALLSSFL  153 (175)
Q Consensus       118 i~~~~~~g~--------------~~~a~~~~~~m~~~~~~~~~~li~~~~  153 (175)
                      ...|...|+              +++|.++++.....+...|..++.-+.
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  162 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK  162 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence            778877776              344555555554444443444444333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.62  E-value=0.0037  Score=48.78  Aligned_cols=122  Identities=14%  Similarity=0.135  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYS  122 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~  122 (175)
                      |..-+..| ..|..++|++.+...... .+-|..-+....+.+.+.++.++|.+.++.+...  .|+ ...+-.+-.+|.
T Consensus       310 YG~A~~~~-~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all  385 (484)
T COG4783         310 YGRALQTY-LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL  385 (484)
T ss_pred             HHHHHHHH-HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence            44444444 668999999999997655 3334445555577888999999999999999874  566 567888889999


Q ss_pred             hcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          123 KYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       123 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +.|+..+|...++.-..  | |...|..|-.+|...|+..++..-.-|..
T Consensus       386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            99999999999998763  3 78899999999999999888887766654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.62  E-value=0.015  Score=44.41  Aligned_cols=129  Identities=14%  Similarity=0.018  Sum_probs=67.8

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch-------HHHHHH
Q 045063           45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEP-------VVKTAL  117 (175)
Q Consensus        45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l  117 (175)
                      -+.-......|+.+.|..-.++..+.+. -+.........++.+.|++.....+...+.+.|.-.+.       .+|+.+
T Consensus       157 ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl  235 (400)
T COG3071         157 LTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL  235 (400)
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence            3333344444444444444444433321 12233444445555555555555555555554443332       234444


Q ss_pred             HHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063          118 MDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE  174 (175)
Q Consensus       118 i~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  174 (175)
                      ++=....+..+.-.+.+++.+   +.++..--+++.-+.+.|+.++|.++.++-.+++..
T Consensus       236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D  295 (400)
T COG3071         236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD  295 (400)
T ss_pred             HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            444444444444444555444   224555667777888999999999998887766544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.59  E-value=0.0036  Score=42.56  Aligned_cols=117  Identities=6%  Similarity=-0.051  Sum_probs=77.5

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL  117 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  117 (175)
                      ....|..+...+...|++++|+..|.+.......+.  ..++..+-..+...|+.++|...++...... +.....+..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence            355678888888889999999999999865533332  3478888888889999999999998887642 2234566666


Q ss_pred             HHHHH-------hcCChHHH-------HHHHHhccCCCchhHHHHHHHHHhcCC
Q 045063          118 MDMYS-------KYGLLGES-------VEAFKEIEFKDVVTWNALLSSFLRHGL  157 (175)
Q Consensus       118 i~~~~-------~~g~~~~a-------~~~~~~m~~~~~~~~~~li~~~~~~g~  157 (175)
                      ...|.       +.|+++.|       ..+++.....+...+...-..+...|+
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~  166 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR  166 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence            66776       77777644       444444444444444444433443443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.57  E-value=0.0082  Score=48.22  Aligned_cols=162  Identities=10%  Similarity=0.038  Sum_probs=118.1

Q ss_pred             hHHhhcCCCcch-hhhhhcCCCChhHHHHHhhhccC------------------CCchhH--HHHHHHHHhCCCcchHHH
Q 045063            4 FIRMTNFPAKTC-ISIADALPKRYVYTHQVFDEISH------------------GDLSSL--NSQLFSYTRSRNFPATWA   62 (175)
Q Consensus         4 ~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~f~~~~~------------------~~~~~~--~~li~~~~~~g~~~~a~~   62 (175)
                      ..++.|+++-=. |-..|....+.+...+++.....                  |.+..|  ..+-..|-..|+.++|++
T Consensus       136 ~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~  215 (517)
T PF12569_consen  136 PQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE  215 (517)
T ss_pred             HHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            345556544322 66777777777777777776421                  122234  555677888999999999


Q ss_pred             HHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 045063           63 LFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD  141 (175)
Q Consensus        63 l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  141 (175)
                      ..++-.+.  .|+.+ -|..--..+.+.|++.+|...++...+... -|..+-+-.+..+.++|++++|.+++....+++
T Consensus       216 ~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  216 YIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            99987665  36644 777778889999999999999999887543 477788888899999999999999999887664


Q ss_pred             ch----------hHHH--HHHHHHhcCChHHHHHHHHHH
Q 045063          142 VV----------TWNA--LLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       142 ~~----------~~~~--li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ..          +|-.  --.+|.+.|+...|+.-|...
T Consensus       293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            21          2322  355788999988887766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.57  E-value=0.0034  Score=39.52  Aligned_cols=96  Identities=7%  Similarity=-0.009  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCC--CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCC--cchHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL--NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTD--SEPVVKTALM  118 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li  118 (175)
                      ++-.....+.+.|++++|.+.|....+..-  ......+..+-.++.+.|+++.|...++........  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344556667777888888888888765421  111335555677777788888888888877753211  1234566666


Q ss_pred             HHHHhcCChHHHHHHHHhcc
Q 045063          119 DMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~  138 (175)
                      .++.+.|+.++|...+++..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHH
Confidence            77777888888877777765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.54  E-value=0.00014  Score=43.60  Aligned_cols=81  Identities=14%  Similarity=0.096  Sum_probs=50.9

Q ss_pred             CCCcchHHHHHHHHHhcCC-CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHH
Q 045063           54 SRNFPATWALFCYMHSTCL-NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVE  132 (175)
Q Consensus        54 ~g~~~~a~~l~~~m~~~~~-~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  132 (175)
                      .|+++.|+.+|+++.+... .++...+-.+-.++.+.|+.++|..+++. .+.+. .+....-.+..+|.+.|++++|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4677888888888766533 23444455577778888888888888877 22211 222333345677788888888888


Q ss_pred             HHHh
Q 045063          133 AFKE  136 (175)
Q Consensus       133 ~~~~  136 (175)
                      +++.
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.51  E-value=0.008  Score=50.14  Aligned_cols=147  Identities=12%  Similarity=0.080  Sum_probs=111.6

Q ss_pred             hhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchh
Q 045063           19 ADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPER   94 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~   94 (175)
                      .|++ |++++|.+++.+...   .....|-+|-..|-+.|++++++..+--.  +-+.|+ ..-|..+-+-..+.|.+.+
T Consensus       149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHH
Confidence            3455 999999999999753   36778999999999999999998776554  334444 4589999999999999999


Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCc----h----hHHHHHHHHHhcCChHHHHHHHH
Q 045063           95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDV----V----TWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      |.-.|.+.++.. +++...+=--+..|-+.|+...|.+-|.++-..+.    .    .--.++..|...++.+.|.+.++
T Consensus       226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le  304 (895)
T KOG2076|consen  226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE  304 (895)
T ss_pred             HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999864 45666666777889999999999888888764322    1    22233455666677777777766


Q ss_pred             HHH
Q 045063          167 AMT  169 (175)
Q Consensus       167 ~m~  169 (175)
                      .-.
T Consensus       305 ~~~  307 (895)
T KOG2076|consen  305 GAL  307 (895)
T ss_pred             HHH
Confidence            544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.50  E-value=0.0033  Score=54.79  Aligned_cols=125  Identities=14%  Similarity=0.030  Sum_probs=61.3

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCC---CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNL---TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTA  116 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  116 (175)
                      ...|-..|....+.++++.|.+++++.+.. +++-   -...|.++++--...|.-+...++|++..+.  .-....|..
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence            334555555555555555555555555433 1111   1124555555444445555555555555442  112334555


Q ss_pred             HHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063          117 LMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus       117 li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      |...|.+.+.+++|-++++.|.++   ...+|..++..+.+..+.+.|.+++++
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence            555555555555555555555432   334555555555555555555554444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.50  E-value=0.0096  Score=42.59  Aligned_cols=133  Identities=11%  Similarity=0.003  Sum_probs=94.6

Q ss_pred             CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCC-cch-HHH
Q 045063           39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTD-SEP-VVK  114 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~  114 (175)
                      .....+-.+...+.+.|++++|...|++...... .|. ..++..+-.++.+.|++++|...++.+.+.... |.. ..+
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3556677888889999999999999999866522 122 236777888999999999999999999875321 111 134


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHhccC--CCc-hhHH-----------------HHHHHHHhcCChHHHHHHHH
Q 045063          115 TALMDMYSKY--------GLLGESVEAFKEIEF--KDV-VTWN-----------------ALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus       115 ~~li~~~~~~--------g~~~~a~~~~~~m~~--~~~-~~~~-----------------~li~~~~~~g~~~~a~~~~~  166 (175)
                      ..+-.++...        |++++|.+.|+...+  |+. ..+.                 .+-..|.+.|+..+|...++
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~  190 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE  190 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4444555543        788999999998863  322 2221                 23455778899999999999


Q ss_pred             HHHhc
Q 045063          167 AMTRE  171 (175)
Q Consensus       167 ~m~~~  171 (175)
                      +..+.
T Consensus       191 ~al~~  195 (235)
T TIGR03302       191 TVVEN  195 (235)
T ss_pred             HHHHH
Confidence            88754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.48  E-value=0.0032  Score=53.36  Aligned_cols=130  Identities=12%  Similarity=0.089  Sum_probs=90.1

Q ss_pred             hHHhhcCCCcch-----hhhhhcCCCChhHHHHHhhhccC--CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC
Q 045063            4 FIRMTNFPAKTC-----ISIADALPKRYVYTHQVFDEISH--GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT   75 (175)
Q Consensus         4 ~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~   75 (175)
                      +..-.++.|.+.     |+..+.+.+++++|.++.+...+  |+ ...|-.+-..+.+.++.+++.-+  .+... +..+
T Consensus        20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~   96 (906)
T PRK14720         20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQN   96 (906)
T ss_pred             hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccc
Confidence            334456667666     99999999999999999886543  32 22233333355566666655555  33222 1122


Q ss_pred             H-------------------hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           76 A-------------------YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        76 ~-------------------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      .                   ..+-.+-.||-+.|..+++.++|+++.+.. +-|....|.+...|+.. ++++|.+++..
T Consensus        97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720         97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            2                   345556677777899999999999999866 45778889999999988 99999888877


Q ss_pred             cc
Q 045063          137 IE  138 (175)
Q Consensus       137 m~  138 (175)
                      ..
T Consensus       175 AV  176 (906)
T PRK14720        175 AI  176 (906)
T ss_pred             HH
Confidence            54

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.47  E-value=0.0047  Score=38.87  Aligned_cols=88  Identities=11%  Similarity=0.017  Sum_probs=45.8

Q ss_pred             hhhcCCCChhHHHHHhhhccC--CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC--CCHhhHHHHHHHHhcC
Q 045063           18 IADALPKRYVYTHQVFDEISH--GD----LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN--LTAYTFTPVLGACSAL   89 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~--~~~~t~~~ll~~~~~~   89 (175)
                      ..+.+.|+++.|.+.|+++..  |+    ...+..+..++.+.|+++.|.+.|++.......  ....++..+-.++.+.
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~   89 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL   89 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh
Confidence            344555666666666665532  21    123444555666666666666666665443111  1123444445555556


Q ss_pred             CCchhHHHHHHHHHHh
Q 045063           90 PAPERGKQVHALMIKG  105 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~  105 (175)
                      ++.++|...+.+..+.
T Consensus        90 ~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        90 GDKEKAKATLQQVIKR  105 (119)
T ss_pred             CChHHHHHHHHHHHHH
Confidence            6666666666666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.43  E-value=0.0017  Score=47.64  Aligned_cols=111  Identities=9%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             HHHHHhhhcc--CCCchhHHHHHHHHHhC-----CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC----------
Q 045063           28 YTHQVFDEIS--HGDLSSLNSQLFSYTRS-----RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP----------   90 (175)
Q Consensus        28 ~a~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~----------   90 (175)
                      ..++.|...+  ++|..+|-..+..|...     +.++=....++.|++-|+.-|..+|+.|++.+-+..          
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence            4566777776  57888999999888764     566777778889999999999999999999997764          


Q ss_pred             ------CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH-HHHHHHHhcc
Q 045063           91 ------APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG-ESVEAFKEIE  138 (175)
Q Consensus        91 ------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~  138 (175)
                            .-+-+..++++|...|+-||-.+-..|+++|++-+..- +..++.-=|+
T Consensus       132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                  23467899999999999999999999999999987643 3444443343

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.39  E-value=0.015  Score=44.12  Aligned_cols=151  Identities=11%  Similarity=0.023  Sum_probs=95.1

Q ss_pred             hhhhcCCCChhHHHHHhhhccC---CCchhH---HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHH---HHHHHh
Q 045063           17 SIADALPKRYVYTHQVFDEISH---GDLSSL---NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTP---VLGACS   87 (175)
Q Consensus        17 l~~~~~~~~~~~a~~~f~~~~~---~~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~---ll~~~~   87 (175)
                      -..+...|+.+.+.+.+....+   ++...+   ..-...+...|++++|.+.+++..+. .+-+...+..   ......
T Consensus        13 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~   91 (355)
T cd05804          13 ALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGD   91 (355)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcc
Confidence            3444455677776666665432   222222   22233456789999999999998765 2223334332   111112


Q ss_pred             cCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHH
Q 045063           88 ALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      ..+....+.+.+..  .....|+ ......+...+...|++++|.+.++...+  | +...+..+-..|...|++++|..
T Consensus        92 ~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~  169 (355)
T cd05804          92 FSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA  169 (355)
T ss_pred             cccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            24455555555544  1122333 33455666788999999999999999863  3 56678888889999999999999


Q ss_pred             HHHHHHh
Q 045063          164 VFQAMTR  170 (175)
Q Consensus       164 ~~~~m~~  170 (175)
                      .+++..+
T Consensus       170 ~l~~~l~  176 (355)
T cd05804         170 FMESWRD  176 (355)
T ss_pred             HHHhhhh
Confidence            9988765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.38  E-value=0.0058  Score=46.08  Aligned_cols=122  Identities=11%  Similarity=0.063  Sum_probs=91.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      .|.-+...|+...|.++-.+..-|+...|-..|.++++.|++++-.++-..      +-+..=|-.++.+|.+.|...+|
T Consensus       183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA  256 (319)
T PF04840_consen  183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA  256 (319)
T ss_pred             HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence            566667788888999998888889999999999999999998877765432      22347788889999999998888


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhc
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRH  155 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~  155 (175)
                      ..+...          ..+..-+..|.++|++.+|.+.--+  .+|.....-+.+.+...
T Consensus       257 ~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~--~kd~~~L~~i~~~~~~~  304 (319)
T PF04840_consen  257 SKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK--EKDIDLLKQILKRCPGN  304 (319)
T ss_pred             HHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH--cCCHHHHHHHHHHCCCC
Confidence            887665          2226678889999999998666443  45666666655544333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.37  E-value=0.0034  Score=40.75  Aligned_cols=27  Identities=11%  Similarity=0.105  Sum_probs=17.5

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYM   67 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m   67 (175)
                      ..++.++|.++++.|+.+...++.+..
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~   28 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSV   28 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence            345666777777777776666666544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0059  Score=44.34  Aligned_cols=120  Identities=16%  Similarity=0.099  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS  122 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  122 (175)
                      .-..-...|++.|++++|++..+..    .....  ...=+.++.+..+++.|++.+..|.+-   -+..|.+.|..++.
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv  180 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLG----ENLEA--AALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV  180 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhcc----chHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH
Confidence            3344456788999999999998872    22233  333345567788899999999999762   24556776777665


Q ss_pred             h----cCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          123 K----YGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       123 ~----~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +    .+.+.+|.-+|++|.++   +..+-|-+..++...|++++|..++++...+
T Consensus       181 ~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  181 KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4    56789999999999975   5555666677888999999999999998754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.34  E-value=0.0094  Score=38.33  Aligned_cols=103  Identities=8%  Similarity=0.024  Sum_probs=71.1

Q ss_pred             HHHHhCCCcchHHHHHHHHHhcCCCCCH--hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc----hHHHHHHHHHHH
Q 045063           49 FSYTRSRNFPATWALFCYMHSTCLNLTA--YTFTPVLGACSALPAPERGKQVHALMIKGGTDSE----PVVKTALMDMYS  122 (175)
Q Consensus        49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~  122 (175)
                      .++-..|+.++|..+|.+-...|+....  ..+..+-..+...|++++|..+++......  |+    ......+.-++.
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence            3455678888888888888888776553  256666677778888888888888877642  32    223333445667


Q ss_pred             hcCChHHHHHHHHhccCCCchhHHHHHHHHH
Q 045063          123 KYGLLGESVEAFKEIEFKDVVTWNALLSSFL  153 (175)
Q Consensus       123 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~  153 (175)
                      ..|+.++|.+.+-....+++..|.--|..|.
T Consensus        87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALAETLPRYRRAIRFYA  117 (120)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888877666666666666666554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.32  E-value=0.0073  Score=46.31  Aligned_cols=85  Identities=11%  Similarity=-0.109  Sum_probs=41.9

Q ss_pred             HhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHH
Q 045063           52 TRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESV  131 (175)
Q Consensus        52 ~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  131 (175)
                      ...|++++|++.|.+..+... -+...|..+-.++.+.|++++|...+++.++.. +.+...|..+-.+|...|++++|.
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence            344555555555555543311 123344444455555555555555555555432 123334555555555555555555


Q ss_pred             HHHHhcc
Q 045063          132 EAFKEIE  138 (175)
Q Consensus       132 ~~~~~m~  138 (175)
                      ..|+...
T Consensus        91 ~~~~~al   97 (356)
T PLN03088         91 AALEKGA   97 (356)
T ss_pred             HHHHHHH
Confidence            5555543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.024  Score=41.05  Aligned_cols=151  Identities=9%  Similarity=0.028  Sum_probs=102.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHH---HHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQ---LFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +..+-...|+.+.|..+++++...=..++...   -.-+-..|++++|.+.|+...+.. +.|.+++--=+...-..|+.
T Consensus        58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~  136 (289)
T KOG3060|consen   58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN  136 (289)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence            66677788899999999998764212221111   112334688999999999998876 45556776666666666766


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcC---ChHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHG---LAKEAFGVFQ  166 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g---~~~~a~~~~~  166 (175)
                      -+|.+.+....+. +..|...|.-+.+.|...|++++|.-.++++.  .| +...+..+-..+.-.|   +...+.++|.
T Consensus       137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~  215 (289)
T KOG3060|consen  137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE  215 (289)
T ss_pred             HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            6666666655553 67899999999999999999999999999987  55 4444444444443333   4445555555


Q ss_pred             HH
Q 045063          167 AM  168 (175)
Q Consensus       167 ~m  168 (175)
                      +-
T Consensus       216 ~a  217 (289)
T KOG3060|consen  216 RA  217 (289)
T ss_pred             HH
Confidence            43

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.24  E-value=0.0019  Score=36.72  Aligned_cols=50  Identities=14%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             cCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +.|++++|.++++...+.. +-+...+-.+..+|.+.|++++|.++++.+.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566777777777776643 2255566667777777777777777777766

...

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.23  E-value=0.0074  Score=48.92  Aligned_cols=141  Identities=9%  Similarity=0.022  Sum_probs=92.2

Q ss_pred             CcchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCCHhhHHHHHHH
Q 045063           12 AKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLTAYTFTPVLGA   85 (175)
Q Consensus        12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~t~~~ll~~   85 (175)
                      .|...+.....-+-++.+..+++.-.+-+...-+-.|..+++.+++++|-+.+.....+      ..+.+..-|.-+-+-
T Consensus       140 IW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl  219 (835)
T KOG2047|consen  140 IWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL  219 (835)
T ss_pred             chHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence            34445555555566666777777665555555777888888888888888888887644      233444577777777


Q ss_pred             HhcCCCchh---HHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhccCC--CchhHHHHHHHHHh
Q 045063           86 CSALPAPER---GKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIEFK--DVVTWNALLSSFLR  154 (175)
Q Consensus        86 ~~~~~~~~~---a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~  154 (175)
                      .+++.+.-.   ..+++..+..  .-+|.  ..|++|.+.|.+.|++|+|..++++-...  .+.-|+.+.++|++
T Consensus       220 is~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~  293 (835)
T KOG2047|consen  220 ISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ  293 (835)
T ss_pred             HHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence            777655433   3444444443  24554  48999999999999999999999986543  33334444444443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.21  E-value=0.016  Score=48.43  Aligned_cols=154  Identities=10%  Similarity=0.121  Sum_probs=96.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc--------------------
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCYMHST--------------------   70 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------------------   70 (175)
                      ++..|...++.+.|.+.++....     -+...+|+++..|.+...++.|.....++.+.                    
T Consensus       286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~  365 (895)
T KOG2076|consen  286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN  365 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence            45556666666777777776543     24555778888888887788887777777661                    


Q ss_pred             -------CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--CcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-
Q 045063           71 -------CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGT--DSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-  140 (175)
Q Consensus        71 -------~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-  140 (175)
                             ++.++... .-++-|+.+....+....+.+.+.+..+  .-+...|.-+.++|.+.|++.+|..+|..+... 
T Consensus       366 ~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~  444 (895)
T KOG2076|consen  366 ALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE  444 (895)
T ss_pred             ccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence                   11122222 2233444555566666666666666553  334457777777777777777777777776522 


Q ss_pred             ---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          141 ---DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       141 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                         +...|--+-.+|-..|..+.|.+.|+....
T Consensus       445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence               455676677777777777777776666543

>PLN02789 farnesyltranstransferase

Probab=97.20  E-value=0.032  Score=42.20  Aligned_cols=131  Identities=5%  Similarity=-0.032  Sum_probs=59.6

Q ss_pred             hcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc--h
Q 045063           20 DALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP--E   93 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~--~   93 (175)
                      +...++.+.|..+.+++.+  | +..+|+.--.++.+.| +++++++.++++.+... -+..+|+.--..+.+.+..  +
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence            3344455555555555432  2 3333444434444444 34556665555544322 1222344333333333331  3


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSF  152 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~  152 (175)
                      ++..+.+.+.+.. +-|...|+..--.+.+.|+++++.+.++.+.+   .|...|+.....+
T Consensus       126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence            4444554554432 23445555555555555556666665555542   2444455444333

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.19  E-value=0.027  Score=45.84  Aligned_cols=158  Identities=13%  Similarity=0.129  Sum_probs=104.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHH-------hCCCcchHHHHHHHHHhcC-----------CCC---
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYT-------RSRNFPATWALFCYMHSTC-----------LNL---   74 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~l~~~m~~~~-----------~~~---   74 (175)
                      +-..|-+.|+++.|+.+|++..+-+-.+-+-|-..+|       +..+++.|+++..+.....           .++   
T Consensus       393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r  472 (835)
T KOG2047|consen  393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR  472 (835)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence            7788899999999999999987755444444444444       4556777777776654321           111   


Q ss_pred             ---CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCc-hhHH
Q 045063           75 ---TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDV-VTWN  146 (175)
Q Consensus        75 ---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~~~~  146 (175)
                         +...|...++---..|-++..+++++.++...+...... -...-.+-...-+++++++++.-.    -|++ ..||
T Consensus       473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~  551 (835)
T KOG2047|consen  473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN  551 (835)
T ss_pred             HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence               122344445555566788889999999987666433332 223333456777899999998754    2343 4788


Q ss_pred             HHHHHHHh---cCChHHHHHHHHHHHhcccCC
Q 045063          147 ALLSSFLR---HGLAKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       147 ~li~~~~~---~g~~~~a~~~~~~m~~~g~~p  175 (175)
                      +.+.-+.+   .-..+.|..+|++..+ |+.|
T Consensus       552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp  582 (835)
T KOG2047|consen  552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPP  582 (835)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence            88776663   2368899999999887 6655

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.0034  Score=52.72  Aligned_cols=148  Identities=14%  Similarity=0.080  Sum_probs=109.8

Q ss_pred             CChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063           24 KRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHA  100 (175)
Q Consensus        24 ~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~  100 (175)
                      +..+.|.++|.+...   .|...=|=+--+++..|++.+|.++|.+.++... -...+|..+-++|...|.+..|.+.|+
T Consensus       626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe  704 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYE  704 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence            456778888887643   3666667777788899999999999999988743 344578899999999999999999999


Q ss_pred             HHHHh-CCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC--CchhHHHHHHHH------------------HhcCC
Q 045063          101 LMIKG-GTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK--DVVTWNALLSSF------------------LRHGL  157 (175)
Q Consensus       101 ~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~--~~~~~~~li~~~------------------~~~g~  157 (175)
                      ...+. .-..+..+.+.|..++-+.|.+.+|.+......  .|  .++.||..+...                  ...+.
T Consensus       705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~  784 (1018)
T KOG2002|consen  705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE  784 (1018)
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            98865 335567788999999999999999877665543  22  445566544321                  12245


Q ss_pred             hHHHHHHHHHHHhcc
Q 045063          158 AKEAFGVFQAMTRER  172 (175)
Q Consensus       158 ~~~a~~~~~~m~~~g  172 (175)
                      .+.|.++|.+|...+
T Consensus       785 le~a~r~F~~ls~~~  799 (1018)
T KOG2002|consen  785 LEEARRLFTELSKNG  799 (1018)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            777888888886543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.012  Score=46.25  Aligned_cols=150  Identities=13%  Similarity=0.061  Sum_probs=92.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~   91 (175)
                      +-.+|....+.++.++.|+....   .+..+|-.=-..+.-.+++++|..=|++-++.  .|.. ..|.-+--+..+.+.
T Consensus       366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k  443 (606)
T KOG0547|consen  366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHK  443 (606)
T ss_pred             HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHH
Confidence            55677777888888888877643   24444443334444445566666666665332  2222 133333333345667


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---------------------------------
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---------------------------------  138 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---------------------------------  138 (175)
                      +++++..|++.+++ ++.....|+-....+...+++++|.+.|+...                                 
T Consensus       444 ~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a  522 (606)
T KOG0547|consen  444 IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQA  522 (606)
T ss_pred             HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHH
Confidence            77777777777664 55556677777777777777777777776643                                 


Q ss_pred             --------CCC---chhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          139 --------FKD---VVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       139 --------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                              +-|   ...|..|-..-.+.|++++|+++|++-
T Consensus       523 ~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  523 ENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                    111   234666666677788888888888763

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.18  E-value=0.0067  Score=46.53  Aligned_cols=87  Identities=7%  Similarity=-0.107  Sum_probs=73.7

Q ss_pred             HHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHH
Q 045063           84 GACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKE  160 (175)
Q Consensus        84 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~  160 (175)
                      ..+...|++++|...+.+.++.. +-+...|..+..+|.+.|++++|...++...+  | +...|..+-.+|.+.|+++.
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            45567899999999999999854 34567889999999999999999999999863  3 56678888889999999999


Q ss_pred             HHHHHHHHHhc
Q 045063          161 AFGVFQAMTRE  171 (175)
Q Consensus       161 a~~~~~~m~~~  171 (175)
                      |...|++..+.
T Consensus        89 A~~~~~~al~l   99 (356)
T PLN03088         89 AKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.17  E-value=0.018  Score=39.27  Aligned_cols=81  Identities=10%  Similarity=0.054  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc--hHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHH
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSE--PVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSS  151 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~  151 (175)
                      ..+..+-..+...|++++|...+++..+....+.  ...+..+...|.+.|++++|...++....  | +...+..+...
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            3677777788889999999999999986543332  46889999999999999999999998763  3 55567777777


Q ss_pred             HHhcCC
Q 045063          152 FLRHGL  157 (175)
Q Consensus       152 ~~~~g~  157 (175)
                      +...|+
T Consensus       116 ~~~~g~  121 (172)
T PRK02603        116 YHKRGE  121 (172)
T ss_pred             HHHcCC
Confidence            777776

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.016  Score=44.77  Aligned_cols=148  Identities=14%  Similarity=0.102  Sum_probs=115.0

Q ss_pred             hcCCCChhHHHHHhhhcc--CC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHH-HHHH-hcCCCchh
Q 045063           20 DALPKRYVYTHQVFDEIS--HG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPV-LGAC-SALPAPER   94 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~l-l~~~-~~~~~~~~   94 (175)
                      +...++++.|.=.|+...  .| +...|.=|+.+|...|++++|..+-.+..+. +.-+..+.+.+ -..| .....-++
T Consensus       344 L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK  422 (564)
T KOG1174|consen  344 LIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK  422 (564)
T ss_pred             HHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence            446788888988888764  34 8889999999999999999999887775444 44456666666 2333 34445688


Q ss_pred             HHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063           95 GKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus        95 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      |..+++.-.+  +.|+ ....+.+...+...|..+++..+++.-.  .+|....+.|-+.++..+...+|.+.|..-.+
T Consensus       423 AKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  423 AKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            8888887654  4565 4577888899999999999999998865  67999999999999999999999888876543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.16  E-value=0.0031  Score=41.81  Aligned_cols=64  Identities=17%  Similarity=0.192  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh-----cccCC
Q 045063          112 VVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR-----ERVEF  175 (175)
Q Consensus       112 ~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p  175 (175)
                      .....++..+...|++++|.+..+...  .| |...|-.+|.+|.+.|+...|.+.|+++.+     -|+.|
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence            466778888889999999999998887  44 677899999999999999999999888743     37766

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.09  E-value=0.015  Score=39.53  Aligned_cols=111  Identities=11%  Similarity=-0.022  Sum_probs=77.3

Q ss_pred             cchHHHHHHHHH-hcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc--chHHHHHHHHHHHhcCChHHHHHH
Q 045063           57 FPATWALFCYMH-STCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDS--EPVVKTALMDMYSKYGLLGESVEA  133 (175)
Q Consensus        57 ~~~a~~l~~~m~-~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~  133 (175)
                      +..+.+.+..+. ..+..-....|..+...+...|++++|...+.........+  ...+|..+-..|...|++++|...
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444555555553 23333334567777788888999999999999987643222  234889999999999999999999


Q ss_pred             HHhccC--C-CchhHHHHHHHHH-------hcCChHHHHHHHHH
Q 045063          134 FKEIEF--K-DVVTWNALLSSFL-------RHGLAKEAFGVFQA  167 (175)
Q Consensus       134 ~~~m~~--~-~~~~~~~li~~~~-------~~g~~~~a~~~~~~  167 (175)
                      ++....  | ....++.+...+.       +.|+++.|...+++
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            998763  2 3445666666666       78888766655544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.013  Score=46.68  Aligned_cols=156  Identities=11%  Similarity=0.044  Sum_probs=102.0

Q ss_pred             CcchhhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHH----------------------------------HHHhC
Q 045063           12 AKTCISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLF----------------------------------SYTRS   54 (175)
Q Consensus        12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~----------------------------------~~~~~   54 (175)
                      ||-++=--|.-.|+.++|++.|.+...-|   ...|-.+-.                                  -|.+.
T Consensus       314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t  393 (611)
T KOG1173|consen  314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT  393 (611)
T ss_pred             chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence            34444444555588888888888764311   112333333                                  34445


Q ss_pred             CCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHh--CCC---c-chHHHHHHHHHHHhcCCh
Q 045063           55 RNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKG--GTD---S-EPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        55 g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~---~-~~~~~~~li~~~~~~g~~  127 (175)
                      ++++.|.+.|.+..  ++-|+. ...+-+--...+.+.+.+|..+|+.....  .+.   + -..+++.|-++|.+.+.+
T Consensus       394 ~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  394 NNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             ccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            55556665555542  333433 34444444455667788888888877722  111   1 223688888999999999


Q ss_pred             HHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          128 GESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       128 ~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...++.-.   ..|..++.++--.|...|+++.|.+.|.+-.
T Consensus       472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            99999998865   4588899999999999999999999887743

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.03  E-value=0.0067  Score=49.61  Aligned_cols=156  Identities=11%  Similarity=0.056  Sum_probs=106.8

Q ss_pred             cchhhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHH-Hhc----CCC------------
Q 045063           13 KTCISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYM-HST----CLN------------   73 (175)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m-~~~----~~~------------   73 (175)
                      |..+|.+|+..|+...|..+..+..+  |+...|..+........-++.|++++++- .+.    |..            
T Consensus       427 w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~  506 (777)
T KOG1128|consen  427 WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADK  506 (777)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHH
Confidence            33478888888888888888877643  56666777666655555555666665552 110    111            


Q ss_pred             ----------CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccCCC-
Q 045063           74 ----------LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEFKD-  141 (175)
Q Consensus        74 ----------~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-  141 (175)
                                ....+|-..-.+..+.++++.+-+.|.....  ..||- ..||++-.+|.+.|+-.+|...+.+-.+-| 
T Consensus       507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence                      1222343444444566678888888877765  45654 589999999999999999999999877554 


Q ss_pred             --chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          142 --VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       142 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                        -..|.-.+-.-...|.++.|.+.+.+|..
T Consensus       585 ~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence              44566667777899999999999888764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.02  E-value=0.003  Score=35.61  Aligned_cols=52  Identities=17%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             HHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          119 DMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+.+.|++++|.+.|+...+.   +...|..+-.++.+.|++++|...|++..+
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556666666666666666532   344555666666666666666666666544

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.99  E-value=0.006  Score=39.60  Aligned_cols=78  Identities=9%  Similarity=0.005  Sum_probs=53.6

Q ss_pred             chhhhhhcCCCChhHHHHHhhhcc-------------------CCCchhHHHHHHHHHhCCCcchHHHHHHHHHh-cCCC
Q 045063           14 TCISIADALPKRYVYTHQVFDEIS-------------------HGDLSSLNSQLFSYTRSRNFPATWALFCYMHS-TCLN   73 (175)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~f~~~~-------------------~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~   73 (175)
                      ..+|.++++.|+++...++.+..=                   .|+..+-.+++.+|+.+|++..|+++.+...+ -+++
T Consensus         6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~   85 (126)
T PF12921_consen    6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP   85 (126)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC
Confidence            458899999999999999987541                   13455566677777777777777777777543 3666


Q ss_pred             CCHhhHHHHHHHHhcCCC
Q 045063           74 LTAYTFTPVLGACSALPA   91 (175)
Q Consensus        74 ~~~~t~~~ll~~~~~~~~   91 (175)
                      .+...|..|++.+....+
T Consensus        86 i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   86 IPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            666677777766654443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.97  E-value=0.045  Score=44.81  Aligned_cols=151  Identities=9%  Similarity=-0.028  Sum_probs=111.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~   92 (175)
                      -+..-..+.+++.|+.+|.+...  +....|-.-+..-.-.+..++|++++++-++. + |+- .-|..+-..+-+.+++
T Consensus       624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f-p~f~Kl~lmlGQi~e~~~~i  701 (913)
T KOG0495|consen  624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-F-PDFHKLWLMLGQIEEQMENI  701 (913)
T ss_pred             HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C-CchHHHHHHHhHHHHHHHHH
Confidence            45556677778888888877653  45556655555555667788888888776554 3 443 3677777777778888


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +.|+..|..=.+. ++..+..|-.|...--+.|.+-+|..+++.-.  .| |...|-..|+.=.|.|+.+.|..++-+-.
T Consensus       702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL  780 (913)
T KOG0495|consen  702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL  780 (913)
T ss_pred             HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8888777654432 45556789999888889999999999999866  33 77889999999999999999987765543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.94  E-value=0.058  Score=43.11  Aligned_cols=141  Identities=8%  Similarity=-0.007  Sum_probs=94.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHH-HHhcCCCCCHhhHHHHHHHHhcC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCY-MHSTCLNLTAYTFTPVLGACSAL   89 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~~~~~~~~t~~~ll~~~~~~   89 (175)
                      .++.--|..-+..|+.+|.+..+     .++..++++|.-||.. |.+-|.++|+- |++-|-.|  .--..-++.++..
T Consensus       372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~l  448 (656)
T KOG1914|consen  372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHL  448 (656)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHh
Confidence            66666677778888888888764     2666778888888764 66888888876 44443222  2233446666777


Q ss_pred             CCchhHHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhcc-------CCCchhHHHHHHHHHhcCChH
Q 045063           90 PAPERGKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIE-------FKDVVTWNALLSSFLRHGLAK  159 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~  159 (175)
                      ++-..++.+|+.....++.||.  .+|..+|+.-...|++..+.++-+++.       ++....-..+++-|.-.+...
T Consensus       449 Ndd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  449 NDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             CcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence            8888888888888877666654  588888888888888888777766654       222234445555555444433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.94  E-value=0.0027  Score=36.05  Aligned_cols=51  Identities=4%  Similarity=-0.043  Sum_probs=27.3

Q ss_pred             hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063           53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  104 (175)
                      +.|++++|.+.|++...... -+...+..+..++.+.|++++|..+++.+..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45556666666666544311 1344445555666666666666666665554

...

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.93  E-value=0.045  Score=43.19  Aligned_cols=148  Identities=10%  Similarity=0.085  Sum_probs=120.8

Q ss_pred             cCCCChhHHHHHhhhccC---CCchhHHHHHHHHH----hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           21 ALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYT----RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      ....+++.++++|....+   ....||..+--.|+    +..++..|.+++-..  -|.-|...+|.--+..=.+.+.++
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efD  454 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFD  454 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHH
Confidence            356788888888876543   46677777766665    457888999888776  477788989999998889999999


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-CC----CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-FK----DVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ..+.+++..++-+ +-|..+|......-...|+.|.|..+|.... +|    -...|-+.|.-=...|.+++|..+++.+
T Consensus       455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl  533 (677)
T KOG1915|consen  455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL  533 (677)
T ss_pred             HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence            9999999999864 3477899999999999999999999999876 44    2456888888888999999999999998


Q ss_pred             Hhc
Q 045063          169 TRE  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       534 L~r  536 (677)
T KOG1915|consen  534 LDR  536 (677)
T ss_pred             HHh
Confidence            765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.93  E-value=0.016  Score=46.59  Aligned_cols=122  Identities=10%  Similarity=0.054  Sum_probs=95.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +--.|...|+++.|.+.+++.-+  |. +..|-.--..+-+.|++.+|.+.++..++... .|...=+-....+.+.|+.
T Consensus       200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~  278 (517)
T PF12569_consen  200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRI  278 (517)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCH
Confidence            45567799999999999998765  32 44578888999999999999999999866532 3445666677888999999


Q ss_pred             hhHHHHHHHHHHhCCCcchH------HH--HHHHHHHHhcCChHHHHHHHHhcc
Q 045063           93 ERGKQVHALMIKGGTDSEPV------VK--TALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~------~~--~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ++|..++....+.+..|-..      .|  ...-.+|.+.|++..|..-|..+.
T Consensus       279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999998776544332      23  566688999999999988777765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.89  E-value=0.049  Score=42.78  Aligned_cols=112  Identities=11%  Similarity=0.038  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH-HHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM-DMY  121 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~  121 (175)
                      ....|-.-|-+-|+-..|++.+-+--+. ++-+..|.-=|-..|....-.+++...|+...  -+.|++.-|-.+| +++
T Consensus       594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~  670 (840)
T KOG2003|consen  594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCF  670 (840)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHH
Confidence            3344444444444444444443332221 22222232222233333334456666666543  3799999998888 555


Q ss_pred             HhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCC
Q 045063          122 SKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGL  157 (175)
Q Consensus       122 ~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~  157 (175)
                      .+.|.+.+|+++++..-++   |+...--|++.+...|.
T Consensus       671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            6799999999999998743   78888888887777763

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.06  Score=46.23  Aligned_cols=113  Identities=12%  Similarity=0.010  Sum_probs=89.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-------------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-------------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHST   70 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~   70 (175)
                      +-......+-+++|..+|++...                         .....|+-+-.+=.+.|...+|.+-|-+.   
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence            55566677888888888887532                         24556888888888888888888877654   


Q ss_pred             CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           71 CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        71 ~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                         -|...|.-+++.+.+.|.+++....+....+..-.|.+.  +.||-+|++.+++.+.++++..
T Consensus      1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~g 1191 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAG 1191 (1666)
T ss_pred             ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcC
Confidence               355689999999999999999999988887766555544  6899999999999998888764

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.85  E-value=0.0096  Score=49.26  Aligned_cols=113  Identities=15%  Similarity=0.122  Sum_probs=62.4

Q ss_pred             hhhcCCCChhHHHHHhhhccCCCchh--HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           18 IADALPKRYVYTHQVFDEISHGDLSS--LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      .+-.+...+..|..+++.++...+.+  |.-+-..|+..|+++-|.++|.+-         .-|+-.+..|.+.|+++.|
T Consensus       740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence            33444555566666666555443333  566666666677777777666552         1234455666667776666


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD  141 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  141 (175)
                      ..+-.+.  .|....+..|-+-..-.-+.|++.+|.+++-.+..||
T Consensus       811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~  854 (1636)
T KOG3616|consen  811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD  854 (1636)
T ss_pred             HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch
Confidence            6654433  2233344455555555555666666666555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.80  E-value=0.0096  Score=39.40  Aligned_cols=69  Identities=10%  Similarity=0.055  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHH-----HhCCCcchHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMI-----KGGTDSEPVV  113 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~  113 (175)
                      ...++..+...|++++|..+....... -+.+...|..+|.++...|+...|.+.|+.+.     +.|+.|+..+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            344555555677777777777777554 22455677777777777777777777777765     2377776654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.79  E-value=0.16  Score=41.70  Aligned_cols=150  Identities=6%  Similarity=-0.095  Sum_probs=72.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      --..|.+.+.++-|+.+|....+   .+...|.-....=-..|..++...+|.+.... .+-...-|....+-.-..|++
T Consensus       522 da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv  600 (913)
T KOG0495|consen  522 DAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDV  600 (913)
T ss_pred             hHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCc
Confidence            33445555555555555555432   13344444444333445555555555555444 222333444444444455555


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ..|+.++.+..+.. +.+...|-+-+..-.....+|.|..+|....  .+....|.--+.----.++.++|.+++++
T Consensus       601 ~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe  676 (913)
T KOG0495|consen  601 PAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE  676 (913)
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence            55555555555432 1234455555555555555555555555543  22334444433333344455555555444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.76  E-value=0.16  Score=40.68  Aligned_cols=143  Identities=10%  Similarity=0.083  Sum_probs=111.0

Q ss_pred             hhHHHHHhhhcc----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063           26 YVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPAPERGKQVHA  100 (175)
Q Consensus        26 ~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~  100 (175)
                      .+.....++++.    ..-+.+|..+|+.--+..-++.|..+|.+.++.+..+ .....+++|..+|. ++.+.|..+|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence            344444555443    2356789999999889888999999999999998888 55688889988774 67788999988


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          101 LMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK------DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       101 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .=.+. ..-+..--...++.+...++-..+..+|+.....      ...+|..+|.-=..-|++..+.++-+++..
T Consensus       426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            65443 2233444578889999999999999999998744      346899999988899999999988777643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.018  Score=45.89  Aligned_cols=138  Identities=12%  Similarity=0.087  Sum_probs=109.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-----CCCC-CHhhHHHHHHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHST-----CLNL-TAYTFTPVLGAC   86 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~~~~-~~~t~~~ll~~~   86 (175)
                      +=-=|.+.++...|.+.|.+...   .|....+-+--...+.+.+.+|...|..-+..     .-++ -..+++.|-.++
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence            44456778899999999988643   37777887777777888999999999987621     1111 234788999999


Q ss_pred             hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHh
Q 045063           87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLR  154 (175)
Q Consensus        87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~  154 (175)
                      .+.+..++|...+++-... .+.|..+++++--.|...|.++.|.+.|..-.  +||-.+-..++..+..
T Consensus       466 Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            9999999999999998875 46788999999999999999999999999865  7777666666665443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.71  E-value=0.008  Score=49.19  Aligned_cols=129  Identities=12%  Similarity=0.071  Sum_probs=99.4

Q ss_pred             CCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHH
Q 045063           23 PKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQV   98 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~   98 (175)
                      .++++++.+.|+.--+  | ...+|-..-.+..+.++++.|.+.|..-..  ..||.. .||.+-.++.+.+.-.+|...
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence            4555555555554221  1 445566666677788899999999988643  456654 999999999999999999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-----CCCchhHHHHHHHHHh
Q 045063           99 HALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-----FKDVVTWNALLSSFLR  154 (175)
Q Consensus        99 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~  154 (175)
                      +.+..+.. .-+...|-+.+....+.|.+++|.+.+.++.     ..|..+-..++..-.+
T Consensus       576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence            99999987 6788899999999999999999999999986     2366666666665443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.70  E-value=0.055  Score=46.21  Aligned_cols=61  Identities=7%  Similarity=-0.050  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  104 (175)
                      ..+-.+-.||-+.|+.++|.++|++..+.. +-|....|.+-..++.. ++++|.+++.+...
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY  177 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence            445556666767777777777777776654 33444666666666655 66666666555543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.67  E-value=0.007  Score=35.42  Aligned_cols=56  Identities=23%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccC---------CC-chhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          113 VKTALMDMYSKYGLLGESVEAFKEIEF---------KD-VVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       113 ~~~~li~~~~~~g~~~~a~~~~~~m~~---------~~-~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +++.+-..|.+.|++++|.+.|++..+         ++ ..+++.+-.+|...|++++|.+.+++-
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            556666666666666666666665431         11 335666666666777777776666654

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.087  Score=40.19  Aligned_cols=84  Identities=8%  Similarity=-0.006  Sum_probs=43.9

Q ss_pred             HHhcCCCchhHHHHHHHHHHhCCCcchHHH-HHHHHHHHhcCChHHHHHHHHhccCC-CchhHHHH-HHHHHhcCChHHH
Q 045063           85 ACSALPAPERGKQVHALMIKGGTDSEPVVK-TALMDMYSKYGLLGESVEAFKEIEFK-DVVTWNAL-LSSFLRHGLAKEA  161 (175)
Q Consensus        85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~l-i~~~~~~g~~~~a  161 (175)
                      +.+..|...+|+++|-+.....++ |..+| ..|..+|.++|+.+-|+.++-.+..| +..+.-.+ -.-|.+.+.+=-|
T Consensus       402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyya  480 (557)
T KOG3785|consen  402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYA  480 (557)
T ss_pred             HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            334445666666666555433332 33444 33446667777777777766666554 22222222 2345556655555


Q ss_pred             HHHHHHHH
Q 045063          162 FGVFQAMT  169 (175)
Q Consensus       162 ~~~~~~m~  169 (175)
                      .+.|.++.
T Consensus       481 aKAFd~lE  488 (557)
T KOG3785|consen  481 AKAFDELE  488 (557)
T ss_pred             HHhhhHHH
Confidence            55555544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.61  E-value=0.0077  Score=33.87  Aligned_cols=54  Identities=4%  Similarity=-0.118  Sum_probs=24.6

Q ss_pred             HHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063           50 SYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        50 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  104 (175)
                      .+.+.|++++|.+.|++.++.. +-+...+..+-.++.+.|++++|...+++..+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555555555555554442 11223444444444555555555555554443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.037  Score=44.50  Aligned_cols=126  Identities=8%  Similarity=0.028  Sum_probs=55.3

Q ss_pred             hhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH-HHHHHHHhcCCCc
Q 045063           17 SIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF-TPVLGACSALPAP   92 (175)
Q Consensus        17 l~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~-~~ll~~~~~~~~~   92 (175)
                      |+.+.+.|++++|.+...++..   .|...+-+=+.+..+.+.+++|+.+.+.-   +..-....| --=.-|..+.+.+
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFFFEKAYCEYRLNKL   95 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhhHHHHHHHHHcccH
Confidence            4445555555555555555432   23444555555555555555555333221   100000111 0111222345555


Q ss_pred             hhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS  150 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~  150 (175)
                      ++|...+.     |+.++. .+...-...+-+.|++++|..+++.+.+.+...+..-+.
T Consensus        96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r  149 (652)
T KOG2376|consen   96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR  149 (652)
T ss_pred             HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            55555544     222222 233333444555555555555555555544444444333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.59  E-value=0.008  Score=50.61  Aligned_cols=112  Identities=9%  Similarity=0.030  Sum_probs=90.0

Q ss_pred             CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063           56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFK  135 (175)
Q Consensus        56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  135 (175)
                      ..+.|+++|.+.++. -+-|...-|-+--+++..|.+.+|..+|.+..+.. .-...+|-.+.++|...|++..|.++|+
T Consensus       627 ~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe  704 (1018)
T KOG2002|consen  627 HQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYE  704 (1018)
T ss_pred             HHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence            456788888877655 23455566666677889999999999999998864 3467799999999999999999999999


Q ss_pred             hccC-----CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          136 EIEF-----KDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       136 ~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ...+     .++.+-+.|-+++.+.|++.+|.+.+..-.
T Consensus       705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            9763     267788899999999999999988765543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.52  E-value=0.019  Score=38.58  Aligned_cols=86  Identities=12%  Similarity=0.097  Sum_probs=40.5

Q ss_pred             HHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063           49 FSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  127 (175)
                      .-+...|++++|.++|.-....  .|... -|-.|--++-..|++++|...|....... +-|...+-.+-.+|...|+.
T Consensus        43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence            3344555555555555554222  22222 33333344444555555555555555433 13344444555555555555


Q ss_pred             HHHHHHHHhc
Q 045063          128 GESVEAFKEI  137 (175)
Q Consensus       128 ~~a~~~~~~m  137 (175)
                      +.|.+.|+..
T Consensus       120 ~~A~~aF~~A  129 (157)
T PRK15363        120 CYAIKALKAV  129 (157)
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.49  E-value=0.066  Score=34.43  Aligned_cols=85  Identities=16%  Similarity=0.115  Sum_probs=64.2

Q ss_pred             HHhcCCCchhHHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhccC--CC----chhHHHHHHHHHhcC
Q 045063           85 ACSALPAPERGKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIEF--KD----VVTWNALLSSFLRHG  156 (175)
Q Consensus        85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g  156 (175)
                      ++-..|+.++|..+|++-...|.....  ..+-.+-..|...|++++|..+++....  |+    ......+--++...|
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence            345679999999999999998876553  3666777899999999999999998763  43    122222334667889


Q ss_pred             ChHHHHHHHHHHH
Q 045063          157 LAKEAFGVFQAMT  169 (175)
Q Consensus       157 ~~~~a~~~~~~m~  169 (175)
                      +.++|.+.+-+..
T Consensus        90 r~~eAl~~~l~~l  102 (120)
T PF12688_consen   90 RPKEALEWLLEAL  102 (120)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999876543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.46  E-value=0.016  Score=32.96  Aligned_cols=58  Identities=19%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 045063          112 VVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHG-LAKEAFGVFQAMT  169 (175)
Q Consensus       112 ~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~  169 (175)
                      ..|..+-..+...|++++|...|++..  .| +...|..+-.+|.+.| ++++|.+.+++-.
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            345555555555556666555555544  22 3344555555555555 4555555555543

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.41  E-value=0.082  Score=35.58  Aligned_cols=86  Identities=12%  Similarity=-0.050  Sum_probs=71.2

Q ss_pred             HHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHH
Q 045063           84 GACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKE  160 (175)
Q Consensus        84 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~  160 (175)
                      .-+...|++++|..+|+.+..-. +-+..-|-.|--++-..|++++|...+....  .| |...+-.+-.++...|+.+.
T Consensus        43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence            34568899999999999998743 2345577888899999999999999999865  34 67788888899999999999


Q ss_pred             HHHHHHHHHh
Q 045063          161 AFGVFQAMTR  170 (175)
Q Consensus       161 a~~~~~~m~~  170 (175)
                      |.+.|+.-++
T Consensus       122 A~~aF~~Ai~  131 (157)
T PRK15363        122 AIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.23  Score=36.12  Aligned_cols=144  Identities=10%  Similarity=0.073  Sum_probs=103.9

Q ss_pred             cCCCChhHHHHHhhhccC--------CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh----hHHHHHHHHh
Q 045063           21 ALPKRYVYTHQVFDEISH--------GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY----TFTPVLGACS   87 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~--------~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~----t~~~ll~~~~   87 (175)
                      ....+.+++.+++.++..        ++ ...|.-++-+-.-.|+...|...+++....-  |.+.    ....++   -
T Consensus        23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~l---E   97 (289)
T KOG3060|consen   23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLL---E   97 (289)
T ss_pred             ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHH---H
Confidence            345778888888888753        11 2235555556666789999999999987763  4432    223333   3


Q ss_pred             cCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHH
Q 045063           88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      ..|..++|.++++.+.+.. +.|..++--=+...-..|+--+|.+-+..-.+   .|...|.-+-.-|...|++++|.-.
T Consensus        98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            4678999999999999876 56777776666666666666666655554442   3889999999999999999999999


Q ss_pred             HHHHHh
Q 045063          165 FQAMTR  170 (175)
Q Consensus       165 ~~~m~~  170 (175)
                      ++||.-
T Consensus       177 lEE~ll  182 (289)
T KOG3060|consen  177 LEELLL  182 (289)
T ss_pred             HHHHHH
Confidence            999864

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.39  E-value=0.086  Score=42.49  Aligned_cols=141  Identities=8%  Similarity=0.028  Sum_probs=72.5

Q ss_pred             hhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHH--hCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCch
Q 045063           17 SIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYT--RSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPE   93 (175)
Q Consensus        17 l~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~   93 (175)
                      +.+..+.+++++|.++.+.-...++...-.+=.+||  +.+..++|+..++     |..++.. +.-.=-..|.+.++++
T Consensus        53 vValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~yd  127 (652)
T KOG2376|consen   53 VVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYD  127 (652)
T ss_pred             HhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHH
Confidence            345556777777776665443211111111233444  5677777777776     3333333 4444455667778888


Q ss_pred             hHHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH---HHHhcCChHHHHHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS---SFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m  168 (175)
                      +|..+|+.+.+.+. ++.  ..-..++.+-..    -.+. +.+..+.-...+|..+.+   .+...|++..|+++++.-
T Consensus       128 ealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA  201 (652)
T KOG2376|consen  128 EALDIYQHLAKNNS-DDQDEERRANLLAVAAA----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA  201 (652)
T ss_pred             HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            88888888866543 222  222233322111    0111 233333323334444433   244667888888777665

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.36  E-value=0.25  Score=39.98  Aligned_cols=130  Identities=8%  Similarity=-0.095  Sum_probs=83.1

Q ss_pred             CCchhHHHHHHHHHhCC-----CcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcC---C-----CchhHHHHHHHHHH
Q 045063           39 GDLSSLNSQLFSYTRSR-----NFPATWALFCYMHSTCLNLTAY-TFTPVLGACSAL---P-----APERGKQVHALMIK  104 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~---~-----~~~~a~~~~~~m~~  104 (175)
                      .+...|...+.+.....     +.+.|.++|++..+.  .|+.. .+..+..++...   .     ....+.+.......
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            46778999998866533     366888898888554  35532 333322222111   1     11222233232222


Q ss_pred             h-CCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          105 G-GTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       105 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      . ....+...|.++.-.+...|++++|...+++..  .|+...|..+-..+...|+.++|.+.+++-.+
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            1 123345677777666677899999999999876  56767788888889999999999999887554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.29  E-value=0.021  Score=32.77  Aligned_cols=54  Identities=11%  Similarity=0.035  Sum_probs=33.6

Q ss_pred             HHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           84 GACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        84 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ..+.+.++++.|.+.++.+.+.+ +.+...|...-.+|.+.|++++|.+.|+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34556666677777766666642 2344566666666666777777766666654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.27  E-value=0.14  Score=37.70  Aligned_cols=92  Identities=9%  Similarity=0.055  Sum_probs=69.8

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch----HHHHHHHHHHHhcCChHHHHHHHHhccC--CC----chhHHH
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEP----VVKTALMDMYSKYGLLGESVEAFKEIEF--KD----VVTWNA  147 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~  147 (175)
                      .|...+.-..+.|++++|...|+.+++.-  |+.    ..+-.+-..|...|++++|...|+.+.+  |+    ...+-.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            46665655566789999999999998753  443    4667788889999999999999999873  32    234444


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhc
Q 045063          148 LLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       148 li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +...+...|+.++|...|++..+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            566677899999999999988764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.23  E-value=0.093  Score=38.89  Aligned_cols=151  Identities=11%  Similarity=0.113  Sum_probs=93.1

Q ss_pred             hhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCCH--hhHHHHH
Q 045063           18 IADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST---CLNLTA--YTFTPVL   83 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~--~t~~~ll   83 (175)
                      ..|-..++++.|...|.+...     .    -...|.....+|-+. ++++|.+.|.+..+.   .-.|+.  ..+.-+-
T Consensus        43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA  121 (282)
T PF14938_consen   43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELA  121 (282)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344444555555555554421     1    123356666666554 888888888876532   222333  3677777


Q ss_pred             HHHhcC-CCchhHHHHHHHHHHh----CCCcc--hHHHHHHHHHHHhcCChHHHHHHHHhccCC----C-----ch-hHH
Q 045063           84 GACSAL-PAPERGKQVHALMIKG----GTDSE--PVVKTALMDMYSKYGLLGESVEAFKEIEFK----D-----VV-TWN  146 (175)
Q Consensus        84 ~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-----~~-~~~  146 (175)
                      ..+-+. |+++.|.+.|++..+.    + .+.  ...+..+...+.+.|++++|.++|++....    +     .. .|-
T Consensus       122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            778887 8999999999887742    3 222  346788889999999999999999987521    1     11 122


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 045063          147 ALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       147 ~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+-++...||.-.|...|++...
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            234466778999999999988764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.21  E-value=0.11  Score=35.75  Aligned_cols=97  Identities=8%  Similarity=-0.002  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      ..+..+...|++.|+.++|++.|.+++.....+...  .+-.++..+.-.+++..+.....+....--.+......+-+.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            458889999999999999999999998886666654  788888999999999999988887774322222122222222


Q ss_pred             HH-----HhcCChHHHHHHHHhcc
Q 045063          120 MY-----SKYGLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~-----~~~g~~~~a~~~~~~m~  138 (175)
                      +|     ...|++..|-+.|-...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            22     35789999888887765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.092  Score=40.09  Aligned_cols=125  Identities=15%  Similarity=0.104  Sum_probs=82.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHH-HHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVL-GACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll-~~~~~~~   90 (175)
                      +.+.+--..++|++...+..+..    .|..-|| +-.+++..|...+|.++|-+...-.+ -|..+|.+++ .|+.+.+
T Consensus       365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nk  442 (557)
T KOG3785|consen  365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNK  442 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcC
Confidence            55555555666666666665553    2444444 56888889999999999988733322 4556776665 6667899


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHH-HHHHHHHHhcCChHHHHHHHHhcc--CCCchhH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVK-TALMDMYSKYGLLGESVEAFKEIE--FKDVVTW  145 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~  145 (175)
                      .++.|+.++-.+   ..+.+..+. -.+.+-+-+++.+.-|-+.|+.+.  +|++.-|
T Consensus       443 kP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW  497 (557)
T KOG3785|consen  443 KPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW  497 (557)
T ss_pred             CchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence            999987765543   333344444 344467778999999999998876  4444333

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.10  E-value=0.32  Score=41.90  Aligned_cols=153  Identities=5%  Similarity=-0.102  Sum_probs=103.1

Q ss_pred             hhhcCCCChhHHHHHhhhccC----CCc----hhHHHHHHHHHhCCCcchHHHHHHHHHhcCC---CCC--HhhHHHHHH
Q 045063           18 IADALPKRYVYTHQVFDEISH----GDL----SSLNSQLFSYTRSRNFPATWALFCYMHSTCL---NLT--AYTFTPVLG   84 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~---~~~--~~t~~~ll~   84 (175)
                      ..+...|+++.|...+++...    .+.    ...+.+-..+...|++++|...+.+.....-   .+.  ..+...+-.
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            345678999999999887532    221    2346666777789999999999999864311   111  224455556


Q ss_pred             HHhcCCCchhHHHHHHHHHHh----CCC--c-chHHHHHHHHHHHhcCChHHHHHHHHhccC------C--CchhHHHHH
Q 045063           85 ACSALPAPERGKQVHALMIKG----GTD--S-EPVVKTALMDMYSKYGLLGESVEAFKEIEF------K--DVVTWNALL  149 (175)
Q Consensus        85 ~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~--~~~~~~~li  149 (175)
                      .+...|++++|...+++....    +..  + ....+..+...+...|++++|...+++...      +  ....+..+-
T Consensus       540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  619 (903)
T PRK04841        540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA  619 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence            678899999999998877642    211  1 223445556667788999999888887531      1  122344455


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 045063          150 SSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+...|+.+.|.+.+.+...
T Consensus       620 ~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        620 KISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            667789999999998887643

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.07  E-value=0.18  Score=38.17  Aligned_cols=79  Identities=9%  Similarity=-0.044  Sum_probs=34.4

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063           48 LFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        48 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  127 (175)
                      |.-+...|....|.++-.+.    =.|+..=|-..+.++++.+++++.+.+...      +-++.-|-.+++++.+.|..
T Consensus       184 i~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~  253 (319)
T PF04840_consen  184 IRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK  253 (319)
T ss_pred             HHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence            33334444444444443333    113444444445555555555444443211      11224444555555555555


Q ss_pred             HHHHHHHHh
Q 045063          128 GESVEAFKE  136 (175)
Q Consensus       128 ~~a~~~~~~  136 (175)
                      .+|...+..
T Consensus       254 ~eA~~yI~k  262 (319)
T PF04840_consen  254 KEASKYIPK  262 (319)
T ss_pred             HHHHHHHHh
Confidence            555544444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.04  E-value=0.049  Score=40.21  Aligned_cols=64  Identities=14%  Similarity=0.230  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHh-----cccCC
Q 045063          112 VVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR-----ERVEF  175 (175)
Q Consensus       112 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p  175 (175)
                      .+++.++..+...|+++.+.+.+++...  | |...|..++.+|.+.|+...|...|+++..     .|+.|
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P  225 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP  225 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence            3567788899999999999999998873  3 788999999999999999999999998855     47766

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.02  E-value=0.37  Score=34.97  Aligned_cols=151  Identities=9%  Similarity=0.085  Sum_probs=95.2

Q ss_pred             hhhhcCCCChhHHHHHhhhccC--CCchh----HHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHhhHHHHHHHHhc-
Q 045063           17 SIADALPKRYVYTHQVFDEISH--GDLSS----LNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAYTFTPVLGACSA-   88 (175)
Q Consensus        17 l~~~~~~~~~~~a~~~f~~~~~--~~~~~----~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~~~-   88 (175)
                      -..+...|+++.|.+.|+++..  |+...    .-.+..++.+.+++++|...|++..+. .-.|+. -+...+.+.+. 
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~  117 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhh
Confidence            3444567999999999999864  33221    134557788999999999999998765 222332 33334444321 


Q ss_pred             ----------------CCCch---hHHHHHHHHHHhCCCcchH------H-----H-------HHHHHHHHhcCChHHHH
Q 045063           89 ----------------LPAPE---RGKQVHALMIKGGTDSEPV------V-----K-------TALMDMYSKYGLLGESV  131 (175)
Q Consensus        89 ----------------~~~~~---~a~~~~~~m~~~~~~~~~~------~-----~-------~~li~~~~~~g~~~~a~  131 (175)
                                      ..+..   .|...++.+++.  -|+..      .     -       -.+...|.+.|.+.-|.
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~  195 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV  195 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence                            11223   455666666654  23311      1     0       12335578888888888


Q ss_pred             HHHHhccCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          132 EAFKEIEFK------DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       132 ~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .=|+.+.+.      .......++.+|...|..++|......+..
T Consensus       196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            888887743      233456788999999999999888766543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.01  E-value=0.039  Score=45.88  Aligned_cols=101  Identities=12%  Similarity=0.107  Sum_probs=71.4

Q ss_pred             hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHH
Q 045063           53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVE  132 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  132 (175)
                      ....+..|+.+++....+..  -..-|..+-+.|+..|+++.|+++|.+-         ..++--|+.|.+.|++++|.+
T Consensus       744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k  812 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK  812 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence            34566777777777654432  3446888899999999999999998642         356778999999999999999


Q ss_pred             HHHhccCC--CchhHHHHHHHHHhcCChHHHHHH
Q 045063          133 AFKEIEFK--DVVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus       133 ~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      +-.+...|  .++.|-+--.-.-..|++.+|.++
T Consensus       813 la~e~~~~e~t~~~yiakaedldehgkf~eaeql  846 (1636)
T KOG3616|consen  813 LAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL  846 (1636)
T ss_pred             HHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence            99888766  334454444444455555555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.99  E-value=0.05  Score=30.80  Aligned_cols=60  Identities=10%  Similarity=-0.061  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC-CchhHHHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP-APERGKQVHALMI  103 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~  103 (175)
                      .|..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|.+.+++..
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            44444445555555555555555543331 112224444444444444 3444444444443

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=0.14  Score=38.32  Aligned_cols=50  Identities=18%  Similarity=0.205  Sum_probs=26.8

Q ss_pred             CCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063           22 LPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL   72 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~   72 (175)
                      +.|+++.|.+-|....+    .+...||.-+-.| +.|+...|++...+..++|+
T Consensus       156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI  209 (459)
T ss_pred             ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence            55666666666655443    2444555555444 34455666666666555443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.91  E-value=0.12  Score=41.47  Aligned_cols=140  Identities=12%  Similarity=0.031  Sum_probs=103.1

Q ss_pred             cCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchh
Q 045063           21 ALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPER   94 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~   94 (175)
                      .....+..+.++|-++..     .|....+.|---|--.|+++.|.+-|+..+.  ++|+.. .||-|-..++...+-++
T Consensus       405 ~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~E  482 (579)
T KOG1125|consen  405 LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEE  482 (579)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHH
Confidence            344455566677766531     4667778888888888999999999998754  456654 89999999999999999


Q ss_pred             HHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhcc---C----------CCchhHHHHHHHHHhcCChHH
Q 045063           95 GKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIE---F----------KDVVTWNALLSSFLRHGLAKE  160 (175)
Q Consensus        95 a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~---~----------~~~~~~~~li~~~~~~g~~~~  160 (175)
                      |.+.|.+.++  ++|+- +.+-.|--+|...|.+++|...|-...   +          ++..+|.+|=.++...++.|.
T Consensus       483 AIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  483 AISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             HHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence            9999999887  56764 355666667899999999988776643   1          123478888777777777775


Q ss_pred             HHHH
Q 045063          161 AFGV  164 (175)
Q Consensus       161 a~~~  164 (175)
                      +.+.
T Consensus       561 l~~a  564 (579)
T KOG1125|consen  561 LQEA  564 (579)
T ss_pred             HHHh
Confidence            5443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.87  E-value=0.12  Score=38.64  Aligned_cols=52  Identities=13%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             HhcCChHHHHHHHHhccCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063          122 SKYGLLGESVEAFKEIEFK----DVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE  174 (175)
Q Consensus       122 ~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  174 (175)
                      .+.|.++.|.+=|+...+-    ....||.-+. ..+.|+.+.|+++..|++++|++
T Consensus       155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             eccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence            4678888888888776532    4567777664 67888999999999999999985

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.42  Score=35.46  Aligned_cols=111  Identities=8%  Similarity=-0.059  Sum_probs=83.7

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL  117 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  117 (175)
                      |...|-.|-..|...|+..+|...|.+-.+. |-.|+.. -|...+-.......-.++..++.+..+.. +-|+..-.-|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lL  233 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLL  233 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHH
Confidence            7888999999999999999999999998554 5445443 34444444444446789999999998743 3456677777


Q ss_pred             HHHHHhcCChHHHHHHHHhccC--CCchhHHHHHHH
Q 045063          118 MDMYSKYGLLGESVEAFKEIEF--KDVVTWNALLSS  151 (175)
Q Consensus       118 i~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~  151 (175)
                      -..+...|++.+|...|+.|.+  |....|-.+|..
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            7889999999999999999973  444556666654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.84  E-value=0.43  Score=37.74  Aligned_cols=125  Identities=8%  Similarity=0.073  Sum_probs=93.6

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhcC-CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHH-HHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVK-TALM  118 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li  118 (175)
                      +.+|...|+.--+..-.+.|..+|.+.++.| +.++...+++.+..++. |+...|..+|+.=...  -||...| .-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            4557888888888888899999999998888 55677788888887764 6777888887754432  3555544 6677


Q ss_pred             HHHHhcCChHHHHHHHHhccCC---C--chhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          119 DMYSKYGLLGESVEAFKEIEFK---D--VVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~~~---~--~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ....+.++-+.|..+|+.-.++   +  ..+|..+|+-=...|++..+..+=+.|
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf  528 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF  528 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence            8888899999999999965533   3  467888998777888887776554444

>PLN02789 farnesyltranstransferase

Probab=95.74  E-value=0.62  Score=35.33  Aligned_cols=128  Identities=13%  Similarity=0.028  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALP-APERGKQVHALMIKGGTDSEPVVKTALMDM  120 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  120 (175)
                      +++.+-..+.+.++.++|+.++.+.++.  .|+ ..+|+.--.++.+.+ .++++...++++.+... -+..+|+..--.
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence            4555556666778889999999988654  233 346665555666666 57889999888887643 345567766555


Q ss_pred             HHhcCCh--HHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063          121 YSKYGLL--GESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV  173 (175)
Q Consensus       121 ~~~~g~~--~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  173 (175)
                      +.+.|..  +++..+++.+.   .+|...|+.-...+.+.|+++++++.+.++++.+.
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~  173 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV  173 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence            5566653  56777776665   34778888888888888999999999999887543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.71  E-value=0.18  Score=37.43  Aligned_cols=81  Identities=16%  Similarity=0.134  Sum_probs=32.4

Q ss_pred             hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHH
Q 045063           53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESV  131 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~  131 (175)
                      +.+++++|++.|.+.++. .+-|.+-|..=-.++++.|..+.|.+=.+.-+.  +.|+ ..+|..|=-+|...|++++|.
T Consensus        93 ~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHH
Confidence            334444444444444332 112223333334444444444444333333222  2222 234444444444444444444


Q ss_pred             HHHHh
Q 045063          132 EAFKE  136 (175)
Q Consensus       132 ~~~~~  136 (175)
                      +.|+.
T Consensus       170 ~aykK  174 (304)
T KOG0553|consen  170 EAYKK  174 (304)
T ss_pred             HHHHh
Confidence            44443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.70  E-value=0.76  Score=36.00  Aligned_cols=49  Identities=18%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             HHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063          119 DMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ......|+.++|.=.|....  .| +..+|.-|+.+|...|.+.+|.-.-++
T Consensus       342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~  393 (564)
T KOG1174|consen  342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW  393 (564)
T ss_pred             HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            44456777788777776644  44 788899999999999988888654433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.70  E-value=0.04  Score=32.10  Aligned_cols=59  Identities=12%  Similarity=0.187  Sum_probs=34.7

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHh----CC-Ccc-hHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKG----GT-DSE-PVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      +++.+-..+...|++++|...+++..+.    |- .|+ ..++..+-..|...|++++|.+.+++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4555555556666666666666655532    11 122 34667777777777777777777765

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.70  E-value=0.35  Score=35.57  Aligned_cols=98  Identities=6%  Similarity=-0.071  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--CcchHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGT--DSEPVVKTAL  117 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l  117 (175)
                      ..|+.-+.-+.+.|++++|...|..+.+.-..-.  ...+--+-.++...|++++|...|..+.+.-.  ......+-.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            3467766666778999999999999976522111  23555667778899999999999999986421  1123345555


Q ss_pred             HHHHHhcCChHHHHHHHHhccC
Q 045063          118 MDMYSKYGLLGESVEAFKEIEF  139 (175)
Q Consensus       118 i~~~~~~g~~~~a~~~~~~m~~  139 (175)
                      ...|...|+.++|...++...+
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            6778889999999999887653

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.68  E-value=0.2  Score=42.32  Aligned_cols=128  Identities=7%  Similarity=-0.007  Sum_probs=94.5

Q ss_pred             cCCCChhHHHHHhhhccC-CCchhHHHHHHHHH--hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHH
Q 045063           21 ALPKRYVYTHQVFDEISH-GDLSSLNSQLFSYT--RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQ   97 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~-~~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~   97 (175)
                      ..++++..|.+..+++.. .+-..|..++.++.  +.|+.++|..+++.....+.. |.-|...+-.+|...+..+++..
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence            466788888888877643 45566888888776  579999999888887554444 66799999999999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHhcCChHH----HHHHHHhccCCCchhHHHHHHHH
Q 045063           98 VHALMIKGGTDSEPVVKTALMDMYSKYGLLGE----SVEAFKEIEFKDVVTWNALLSSF  152 (175)
Q Consensus        98 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~li~~~  152 (175)
                      +|++..+.  -|+......+-.+|.|.+.+.+    |.++++..++. ...+.++|+-.
T Consensus        99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Sli  154 (932)
T KOG2053|consen   99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLI  154 (932)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHH
Confidence            99998864  5777777888888999888776    56666654433 33333444433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.63  E-value=0.23  Score=39.12  Aligned_cols=64  Identities=6%  Similarity=-0.058  Sum_probs=45.9

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH----hhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA----YTFTPVLGACSALPAPERGKQVHALMIKG  105 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~  105 (175)
                      +...|+.+-.+|.+.|++++|+..|++-.+.  .|+.    .+|..+-.++.+.|+.++|.+.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3455777788888888888888888876544  3443    35777777778888888888887777663

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.61  E-value=0.13  Score=38.08  Aligned_cols=85  Identities=14%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             HHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHH
Q 045063           85 ACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEA  161 (175)
Q Consensus        85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a  161 (175)
                      -..+.+++++|...|.+.++. .+.|.+-|..-..+|.+.|.++.|.+--+.-..-   ....|..|-.+|...|++.+|
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            346678899999999999885 2456778899999999999999998887776643   456899999999999999999


Q ss_pred             HHHHHHHHh
Q 045063          162 FGVFQAMTR  170 (175)
Q Consensus       162 ~~~~~~m~~  170 (175)
                      .+.|++-.+
T Consensus       169 ~~aykKaLe  177 (304)
T KOG0553|consen  169 IEAYKKALE  177 (304)
T ss_pred             HHHHHhhhc
Confidence            999887543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.48  E-value=0.018  Score=37.94  Aligned_cols=53  Identities=23%  Similarity=0.377  Sum_probs=25.6

Q ss_pred             HHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063           83 LGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFK  135 (175)
Q Consensus        83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  135 (175)
                      ++.+.+.+.++....+++.+.+.+...+....+.++..|++.+..++..++++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            34444445555555555555544433444455555555555555555555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.45  E-value=0.12  Score=40.66  Aligned_cols=96  Identities=4%  Similarity=-0.099  Sum_probs=67.4

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch----HHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH-
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEP----VVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS-  150 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~-  150 (175)
                      ...++.+-.++.+.|++++|...+++.++.  .|+.    ..|..+..+|...|++++|...++...+-+...|..+.. 
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~D  152 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILND  152 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHhC
Confidence            448889999999999999999999998774  4664    368999999999999999999999877643223332111 


Q ss_pred             -HHHhcCChHHHHHHHHHHHhccc
Q 045063          151 -SFLRHGLAKEAFGVFQAMTRERV  173 (175)
Q Consensus       151 -~~~~~g~~~~a~~~~~~m~~~g~  173 (175)
                       .+....+.+...+++++..+.|.
T Consensus       153 pdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        153 PDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             cchhhhcccHHHHHHHHHHHHhCC
Confidence             01122233466667777766653

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.41  E-value=0.034  Score=36.62  Aligned_cols=126  Identities=12%  Similarity=0.079  Sum_probs=68.2

Q ss_pred             chhhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063           14 TCISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL   89 (175)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~   89 (175)
                      ..++..+.+.+.++...+.++.+..    .+....+.++..|++.++.+...++++..  .+.     -...++..|.+.
T Consensus        11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~y-----d~~~~~~~c~~~   83 (143)
T PF00637_consen   11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NNY-----DLDKALRLCEKH   83 (143)
T ss_dssp             CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SSS------CTHHHHHHHTT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--ccc-----CHHHHHHHHHhc
Confidence            3477777777777777777776652    24666788888888887777777766621  112     223455555555


Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCC
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGL  157 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~  157 (175)
                      +.++++..++.++-...-.         +..+...++++.|.+++..  .+|...|..+++.|...+.
T Consensus        84 ~l~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~--~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKK--VDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             TSHHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGG--CSSSHHHHHHHHHHCTSTC
T ss_pred             chHHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHh--cCcHHHHHHHHHHHHhcCc
Confidence            5555555444432211000         0012223333333333322  2367788888888776654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.34  E-value=0.077  Score=30.35  Aligned_cols=56  Identities=5%  Similarity=-0.107  Sum_probs=33.7

Q ss_pred             HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045063           49 FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG  105 (175)
Q Consensus        49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~  105 (175)
                      ..|.+.++++.|.+.++.+..... -+...+...-.++.+.|++++|.+.++...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            345666667777777776655421 23345555556666667777777776666653

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.21  E-value=0.32  Score=41.20  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=78.8

Q ss_pred             hCCCcchHHHHHHHHHhc-CCCCCHhhHHHHHHHH--hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063           53 RSRNFPATWALFCYMHST-CLNLTAYTFTPVLGAC--SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE  129 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  129 (175)
                      ..+++..|++......+. +-.    .|.-+++++  .+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.|+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            457788899988886544 333    344455554  5789999999998888765544 88899999999999999999


Q ss_pred             HHHHHHhccCC--CchhHHHHHHHHHhcCChHHHH
Q 045063          130 SVEAFKEIEFK--DVVTWNALLSSFLRHGLAKEAF  162 (175)
Q Consensus       130 a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~  162 (175)
                      |..++++....  +..--..+..+|+|.+.+.+-.
T Consensus        96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen   96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998854  4444556677888887765443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=95.20  E-value=0.66  Score=38.08  Aligned_cols=122  Identities=11%  Similarity=0.027  Sum_probs=84.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchh---HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSS---LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +...|-+.|+++.|...++..-....+.   |-.--..+..+|++++|...+++..+-.. ||...=.--.+-..++...
T Consensus       377 laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i  455 (700)
T KOG1156|consen  377 LAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEI  455 (700)
T ss_pred             HHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcccc
Confidence            7778889999999999999887654444   33334778889999999999999855422 3332222445556788899


Q ss_pred             hhHHHHHHHHHHhCCC--cc----hHHHHHH--HHHHHhcCChHHHHHHHHhcc
Q 045063           93 ERGKQVHALMIKGGTD--SE----PVVKTAL--MDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~--~~----~~~~~~l--i~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ++|..+.....+.|..  -|    .-+|=.+  -.+|.+.|++..|.+=|..+.
T Consensus       456 ~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  456 EEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             HHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            9999999988877641  11    1133222  366778888887777666655

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.20  E-value=0.35  Score=39.16  Aligned_cols=120  Identities=12%  Similarity=-0.010  Sum_probs=78.1

Q ss_pred             CChhHHHHHhhhccC--CC-chhHHHHHHHHHhCCC--------cchHHHHHHHHHhc-CCCCCHhhHHHHHHHHhcCCC
Q 045063           24 KRYVYTHQVFDEISH--GD-LSSLNSQLFSYTRSRN--------FPATWALFCYMHST-CLNLTAYTFTPVLGACSALPA   91 (175)
Q Consensus        24 ~~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~--------~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~~~~~~   91 (175)
                      ++.+.|..+|++..+  |+ ...|..+..++.....        ...+.+...+.... ....+...|..+--.....|+
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~  435 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence            347789999999864  53 3445554444433211        12223333322221 122344566666444556799


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTW  145 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~  145 (175)
                      +++|...+++.....  |+...|..+-..|...|+.++|.+.+++..  .|...+|
T Consensus       436 ~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        436 TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            999999999998854  788899999999999999999999998865  4544444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.15  E-value=0.45  Score=35.29  Aligned_cols=134  Identities=9%  Similarity=0.147  Sum_probs=80.7

Q ss_pred             ChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHHHHhcCCCchhHHHHH
Q 045063           25 RYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLGACSALPAPERGKQVH   99 (175)
Q Consensus        25 ~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~   99 (175)
                      ++++|..+|+           -.-..|-..|++++|.+.|.+.-..    +-+.. ...|.....++.+. ++++|...+
T Consensus        30 ~~e~Aa~~y~-----------~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~   97 (282)
T PF14938_consen   30 DYEEAADLYE-----------KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY   97 (282)
T ss_dssp             HHHHHHHHHH-----------HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred             CHHHHHHHHH-----------HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence            5666666554           4455666667777777776665321    11111 12455555555444 777777777


Q ss_pred             HHHHHh---CCCcch--HHHHHHHHHHHhc-CChHHHHHHHHhccC-----CC----chhHHHHHHHHHhcCChHHHHHH
Q 045063          100 ALMIKG---GTDSEP--VVKTALMDMYSKY-GLLGESVEAFKEIEF-----KD----VVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus       100 ~~m~~~---~~~~~~--~~~~~li~~~~~~-g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      ++....   .-.|+.  ..+..+...|-.. |++++|.+.|+...+     ..    ..++.-+...+++.|++++|.++
T Consensus        98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~  177 (282)
T PF14938_consen   98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI  177 (282)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            666631   113333  3667777788887 899999888887651     11    23466677889999999999999


Q ss_pred             HHHHHh
Q 045063          165 FQAMTR  170 (175)
Q Consensus       165 ~~~m~~  170 (175)
                      |++...
T Consensus       178 ~e~~~~  183 (282)
T PF14938_consen  178 YEEVAK  183 (282)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.13  E-value=1.1  Score=35.84  Aligned_cols=153  Identities=13%  Similarity=-0.020  Sum_probs=103.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC-C---------chhHHHHHHHHHhC----CCcchHHHHHHHHHhcCCCCCHhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG-D---------LSSLNSQLFSYTRS----RNFPATWALFCYMHSTCLNLTAYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~-~---------~~~~~~li~~~~~~----g~~~~a~~l~~~m~~~~~~~~~~t~~~   81 (175)
                      +++..+=.||-+.+.+.+.+..+. +         ...|..++..++..    ...+.|.+++.++.+.  -|+..-|..
T Consensus       194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~  271 (468)
T PF10300_consen  194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF  271 (468)
T ss_pred             HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence            899999999999999999886542 2         23466777666654    4667899999998654  367665544


Q ss_pred             HH-HHHhcCCCchhHHHHHHHHHHh---CCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHH-HH
Q 045063           82 VL-GACSALPAPERGKQVHALMIKG---GTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSS-FL  153 (175)
Q Consensus        82 ll-~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~-~~  153 (175)
                      .- ..+...|++++|.+.++.....   --+.....+=-+.-.+.-.+++++|.+.|..+.+.+   ..+|.-+..+ +.
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~  351 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL  351 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            32 3345678999999999976531   112223344455566788999999999999998542   2334333333 23


Q ss_pred             hcCCh-------HHHHHHHHHHHh
Q 045063          154 RHGLA-------KEAFGVFQAMTR  170 (175)
Q Consensus       154 ~~g~~-------~~a~~~~~~m~~  170 (175)
                      ..|+.       ++|.++|++...
T Consensus       352 ~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  352 MLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             hhccchhhhhhHHHHHHHHHHHHH
Confidence            56777       888888888653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.11  E-value=0.34  Score=39.04  Aligned_cols=156  Identities=11%  Similarity=0.035  Sum_probs=109.7

Q ss_pred             cCCCcch-----hhhhhcCCCChhHHHHHhhhc-cCC-----------CchhHHHHHHHHHhCCCcchHHHHHHHHHh-c
Q 045063            9 NFPAKTC-----ISIADALPKRYVYTHQVFDEI-SHG-----------DLSSLNSQLFSYTRSRNFPATWALFCYMHS-T   70 (175)
Q Consensus         9 ~~~~~~~-----ll~~~~~~~~~~~a~~~f~~~-~~~-----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~   70 (175)
                      .+.|.|.     |-..|...|.=..|.+.++.= ...           +...=+.  ..+.....+....++|-++.. .
T Consensus       347 ~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~  424 (579)
T KOG1125|consen  347 ELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL  424 (579)
T ss_pred             hcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC
Confidence            4566665     566677777777777777642 110           1110010  233334455677788888744 4


Q ss_pred             CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCch--hHH
Q 045063           71 CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVV--TWN  146 (175)
Q Consensus        71 ~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~--~~~  146 (175)
                      +.++|...++.|---|--.|++++|...|+..++.. +-|..+||-|=...+...+.++|...+.+..  +|+-+  -||
T Consensus       425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN  503 (579)
T KOG1125|consen  425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN  503 (579)
T ss_pred             CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence            645666666666666888999999999999998743 3456699999999999999999999999987  56533  466


Q ss_pred             HHHHHHHhcCChHHHHHHHHHH
Q 045063          147 ALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       147 ~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      .-|+ |...|.+++|.+.|-+-
T Consensus       504 lgIS-~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  504 LGIS-CMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             hhhh-hhhhhhHHHHHHHHHHH
Confidence            6665 79999999999988764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.00  E-value=1.4  Score=38.08  Aligned_cols=155  Identities=5%  Similarity=-0.121  Sum_probs=98.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-------CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCC--HhhHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-------GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLT--AYTFT   80 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~--~~t~~   80 (175)
                      +-..+...|+++.|...+++...       ++    ...+..+-..+...|++++|...+.+....  ...+.  ...+.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            44566778999999998877532       11    122444555677789999999999887543  12222  22444


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhCCC-cchHHH-----HHHHHHHHhcCChHHHHHHHHhccCCCch-------hHHH
Q 045063           81 PVLGACSALPAPERGKQVHALMIKGGTD-SEPVVK-----TALMDMYSKYGLLGESVEAFKEIEFKDVV-------TWNA  147 (175)
Q Consensus        81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------~~~~  147 (175)
                      .+-......|+.++|...++......-. .....+     ...+..+...|+.+.|.+.+.....+...       .+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            4555667889999999988887642111 111111     11234556689999999988776543211       1345


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHh
Q 045063          148 LLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       148 li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +-..+...|+.++|...+.+...
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNE  719 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            56677888999999998888654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.74  E-value=0.088  Score=37.02  Aligned_cols=142  Identities=12%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             hhcCCCChhHHHHHhhhccC--CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH--hhHHHHHHHHhc-
Q 045063           19 ADALPKRYVYTHQVFDEISH--GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA--YTFTPVLGACSA-   88 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~--~t~~~ll~~~~~-   88 (175)
                      .+...|+++.|.+.|+.+..  |+    ....-.+..++.+.|++++|...|+++.+. .-.|..  ..|..-+..+.. 
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~   93 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI   93 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence            45578999999999999864  32    223456778888999999999999998765 222222  222222221111 


Q ss_pred             ---------CCCchhHHHHHHHHHHhCCCcchH-H-----------------HHHHHHHHHhcCChHHHHHHHHhccC--
Q 045063           89 ---------LPAPERGKQVHALMIKGGTDSEPV-V-----------------KTALMDMYSKYGLLGESVEAFKEIEF--  139 (175)
Q Consensus        89 ---------~~~~~~a~~~~~~m~~~~~~~~~~-~-----------------~~~li~~~~~~g~~~~a~~~~~~m~~--  139 (175)
                               .+....|...|+.+++.-  |+.. .                 --.+...|.+.|.+..|..-++.+.+  
T Consensus        94 ~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y  171 (203)
T PF13525_consen   94 PGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY  171 (203)
T ss_dssp             HHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred             ccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence                     122346666666666542  2211 0                 11234667788888888777777763  


Q ss_pred             CCch----hHHHHHHHHHhcCChHHHH
Q 045063          140 KDVV----TWNALLSSFLRHGLAKEAF  162 (175)
Q Consensus       140 ~~~~----~~~~li~~~~~~g~~~~a~  162 (175)
                      |++.    ..-.++.+|.+.|..+.+.
T Consensus       172 p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  172 PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            3332    4567788888888877443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.71  E-value=0.31  Score=36.64  Aligned_cols=132  Identities=10%  Similarity=0.031  Sum_probs=86.7

Q ss_pred             chhHHhhcCCCc--ch-hhhhhcCCCChhHHHHHhh-hc-------cC-------CCchhHHHHHHHHHhCCCcchHHHH
Q 045063            2 LSFIRMTNFPAK--TC-ISIADALPKRYVYTHQVFD-EI-------SH-------GDLSSLNSQLFSYTRSRNFPATWAL   63 (175)
Q Consensus         2 ~~~~~~~~~~~~--~~-ll~~~~~~~~~~~a~~~f~-~~-------~~-------~~~~~~~~li~~~~~~g~~~~a~~l   63 (175)
                      ..+++.+.++|.  -. |.++|.....++. +..+. ++       ++       ....+-..++..-....+++++...
T Consensus         8 r~~I~~~~l~p~~rr~~LsS~fs~e~~w~~-r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~   86 (418)
T KOG4570|consen    8 RRQIVLPQLSPAGRRYLLSSAFSDEHKWEA-REKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYY   86 (418)
T ss_pred             HHHHhhhcCCchhcchhhHHHhhhhhhhhH-HHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHH
Confidence            346667788773  33 5566666655543 33333 22       11       2444556666666667788888888


Q ss_pred             HHHHHhc---CCCCCH--hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           64 FCYMHST---CLNLTA--YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        64 ~~~m~~~---~~~~~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +-..+.+   -..|+.  ++|.-++..    -+++++..+...=++.|+-||.++++.+|+.+.+.+.+.+|.++.-.|.
T Consensus        87 LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen   87 LYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             HHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            8888765   233333  333333322    3567888887777788999999999999999999999998887776665

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.71  E-value=0.53  Score=35.28  Aligned_cols=117  Identities=11%  Similarity=0.163  Sum_probs=73.2

Q ss_pred             cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc--CC----CchhHHHHHHHHHHhCC---CcchHHHHHHHHHHHhcCCh
Q 045063           57 FPATWALFCYMHSTCLNLTAYTFTPVLGACSA--LP----APERGKQVHALMIKGGT---DSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        57 ~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~  127 (175)
                      +++.+++++.|++.|++-+..+|.+.+-....  ..    ....+.++|+.|++...   .++...+..++..  ..+++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45777888889999999888776664433333  22    35688899999997533   4555677777665  44444


Q ss_pred             H----HHHHHHHhccC-----CCchhHHHHHHHHHhcCC---hHHHHHHHHHHHhcccCC
Q 045063          128 G----ESVEAFKEIEF-----KDVVTWNALLSSFLRHGL---AKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       128 ~----~a~~~~~~m~~-----~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p  175 (175)
                      +    .++..++.+.+     .|..-+-+-|-++.....   ..++.++++.+.+.|+++
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki  215 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI  215 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc
Confidence            3    35555555543     244444444444443222   457788888998888763

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=1.3  Score=32.94  Aligned_cols=145  Identities=11%  Similarity=0.049  Sum_probs=99.2

Q ss_pred             hhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           19 ADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      .....|+...|..+|+...+   .+...--.+..+|...|+.+.|..++..+...--....+....-+.-..+....++.
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            34567888888888887653   345566778899999999999999999985542222223323334455555566665


Q ss_pred             HHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccCC-----CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           96 KQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFK-----DVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        96 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      ..+-+..-.   .| |...=-.+...|.-.|+.+.|.+.+-.+.++     |...-..|++.|.-.|..+.+..-++
T Consensus       223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R  296 (304)
T COG3118         223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR  296 (304)
T ss_pred             HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            555555443   34 5667777888999999999998877777644     56677788888888886555444443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.45  E-value=1.8  Score=33.72  Aligned_cols=132  Identities=10%  Similarity=0.010  Sum_probs=86.3

Q ss_pred             CCCChhHHHHHhhhccC-C-----------------------------------C-chhHHHHHHHHHhCCCcchHHHHH
Q 045063           22 LPKRYVYTHQVFDEISH-G-----------------------------------D-LSSLNSQLFSYTRSRNFPATWALF   64 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~-~-----------------------------------~-~~~~~~li~~~~~~g~~~~a~~l~   64 (175)
                      -.|+++.|.+-|+-|.. |                                   . .-.+...+...|..|++++|+++.
T Consensus       132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv  211 (531)
T COG3898         132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV  211 (531)
T ss_pred             hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence            36999999999998853 1                                   1 112688999999999999999999


Q ss_pred             HHHHhc-CCCCCHh--hHHHHHHHHhcC---CCchhHHHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           65 CYMHST-CLNLTAY--TFTPVLGACSAL---PAPERGKQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        65 ~~m~~~-~~~~~~~--t~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      +.-++. -+.++..  .-..|+.+-...   .++..|+..-.+-.  .+.||.. .--.-..++.+.|+..++-.+++.+
T Consensus       212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~a  289 (531)
T COG3898         212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETA  289 (531)
T ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence            987655 4556654  445555554332   24455554444333  3566654 2233447788899999998888887


Q ss_pred             c--CCCchhHHHHHHHHHhcCC
Q 045063          138 E--FKDVVTWNALLSSFLRHGL  157 (175)
Q Consensus       138 ~--~~~~~~~~~li~~~~~~g~  157 (175)
                      =  +|...+|...+  +.+.|+
T Consensus       290 WK~ePHP~ia~lY~--~ar~gd  309 (531)
T COG3898         290 WKAEPHPDIALLYV--RARSGD  309 (531)
T ss_pred             HhcCCChHHHHHHH--HhcCCC
Confidence            5  44555554444  456665

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.44  E-value=0.59  Score=37.00  Aligned_cols=120  Identities=7%  Similarity=0.030  Sum_probs=89.7

Q ss_pred             cchhhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHH-HHhcCCCCCHhhH-HHHHHH
Q 045063           13 KTCISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCY-MHSTCLNLTAYTF-TPVLGA   85 (175)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~~~~~~~~t~-~~ll~~   85 (175)
                      |...++.-.+-.-++.|+++|-+..+     +++..++++|..++. |+...|..+|+- |+.-   ||+..| .--+..
T Consensus       400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~kyl~f  475 (660)
T COG5107         400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKEKYLLF  475 (660)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHHHHHHH
Confidence            34477777788889999999999875     578889999998865 688999999987 4333   455443 334666


Q ss_pred             HhcCCCchhHHHHHHHHHHhCCCcc--hHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           86 CSALPAPERGKQVHALMIKGGTDSE--PVVKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        86 ~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      +...++-+.|+++|+.-..+ +..+  ..+|..+|+.-...|++..+..+=+.|
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf  528 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF  528 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence            78899999999999966543 3334  468999999999999987665444433

>PRK15331 chaperone protein SicA; Provisional

Probab=94.34  E-value=0.64  Score=31.59  Aligned_cols=82  Identities=9%  Similarity=-0.055  Sum_probs=45.4

Q ss_pred             hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHH
Q 045063           87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      .+.|++++|..+|..+...+. -+..=|-.|-.++-..+.+++|...|...-   ..|....-..-.||...|+.+.|..
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence            345666666666666654332 233345555566666666666666665432   2244444445555666666666666


Q ss_pred             HHHHHH
Q 045063          164 VFQAMT  169 (175)
Q Consensus       164 ~~~~m~  169 (175)
                      .|....
T Consensus       127 ~f~~a~  132 (165)
T PRK15331        127 CFELVN  132 (165)
T ss_pred             HHHHHH
Confidence            655443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.25  E-value=2  Score=33.32  Aligned_cols=154  Identities=9%  Similarity=-0.023  Sum_probs=92.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCC-------chhHHHHHHHHHh---CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGD-------LSSLNSQLFSYTR---SRNFPATWALFCYMHSTCLNLTAYTFTPVLGA   85 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~-------~~~~~~li~~~~~---~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~   85 (175)
                      |+-+|-...++|...++.+.++..+       ...---...++-+   .|+.+.|++++.......-.++..||..+-..
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            6668999999999999999998641       1111123344445   89999999999997766666777788777655


Q ss_pred             HhcC---------CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC-hHHH---HHHH---Hhcc-C-----C--C
Q 045063           86 CSAL---------PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL-LGES---VEAF---KEIE-F-----K--D  141 (175)
Q Consensus        86 ~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a---~~~~---~~m~-~-----~--~  141 (175)
                      +...         ..++.|...|.+--+  +.||...=-+++-...-.|. ++..   .++-   .... +     +  |
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d  304 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD  304 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence            5321         124455555543322  33444321122222222332 2222   2222   1111 1     1  2


Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          142 VVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       142 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      -=-+.+++.+++-.|+.++|.+..++|...
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            224667899999999999999999998765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=1.1  Score=36.03  Aligned_cols=54  Identities=13%  Similarity=0.017  Sum_probs=32.2

Q ss_pred             HHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           83 LGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      -+.+.+.|+++.|...|.++++.. +-|...|+....+|.+.|.+..|..--+..
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            445556666666666666666553 344556666666666666666665544433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.22  E-value=1.3  Score=35.45  Aligned_cols=144  Identities=13%  Similarity=0.037  Sum_probs=102.8

Q ss_pred             CCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcC-CCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063           23 PKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAYTFTPVLGACSALPAPERGKQV   98 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~   98 (175)
                      .|+.-.+..-|+....  | +...|-.+-..|....+.++.+..|.+...-. -.||  +|-.=-....-.+++++|.+=
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHH
Confidence            4666667777776542  2 33337778888999999999999999875542 2233  444333334444567888888


Q ss_pred             HHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063           99 HALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus        99 ~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      |+..+.  +.| +...|-.+--+.-|.+.++++...|++..++   -+-.||..-..+.-.++++.|.+.|+.-++
T Consensus       417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            887765  333 3456666666667888999999999998843   456899999999999999999999887654

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=94.22  E-value=1.6  Score=32.53  Aligned_cols=110  Identities=6%  Similarity=0.070  Sum_probs=79.4

Q ss_pred             cchHHHHHHHHHh-cCCCCCHhhHHHHHHHHhc-CC-CchhHHHHHHHHHH-hCCCcchHHHHHHHHHHHhcCChHHHHH
Q 045063           57 FPATWALFCYMHS-TCLNLTAYTFTPVLGACSA-LP-APERGKQVHALMIK-GGTDSEPVVKTALMDMYSKYGLLGESVE  132 (175)
Q Consensus        57 ~~~a~~l~~~m~~-~~~~~~~~t~~~ll~~~~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~  132 (175)
                      +.+|+++|+..-- ..+--|..+-..+++.... .+ ....-.++...+.. .|-.++..+...+|..+++.+++.+-.+
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            4567777763211 3355677777788887765 22 34444555555553 3467888999999999999999999999


Q ss_pred             HHHhcc-----CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063          133 AFKEIE-----FKDVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus       133 ~~~~m~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      +++.-.     ..|..-|..+|..-..+|+..-...+..
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            999865     3388899999999999999766555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.05  E-value=1.3  Score=35.23  Aligned_cols=130  Identities=9%  Similarity=-0.011  Sum_probs=65.7

Q ss_pred             hcCCCChhHHHHHhh--hc-cCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHH
Q 045063           20 DALPKRYVYTHQVFD--EI-SHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGK   96 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~--~~-~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~   96 (175)
                      ..-.++++.+.++.+  ++ +.-+....+.++.-+-+.|-.+.|+++-.+-...            ++-..+.|+++.|.
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~  338 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIAL  338 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHH
Confidence            334677777544443  11 1223445888888888889888888876553221            22333445555544


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC------------------------CchhHHHHHHHH
Q 045063           97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK------------------------DVVTWNALLSSF  152 (175)
Q Consensus        97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------~~~~~~~li~~~  152 (175)
                      ++..+      ..+...|..|-+...+.|+++-|++.|....+.                        ..--+|.-..++
T Consensus       339 ~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~  412 (443)
T PF04053_consen  339 EIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAA  412 (443)
T ss_dssp             HHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence            44322      123445555555555555555555555554311                        111366666777


Q ss_pred             HhcCChHHHHHHHHH
Q 045063          153 LRHGLAKEAFGVFQA  167 (175)
Q Consensus       153 ~~~g~~~~a~~~~~~  167 (175)
                      .-.|+.+++.+++.+
T Consensus       413 ~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  413 LLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHT-HHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            777888888877765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=93.94  E-value=0.65  Score=40.13  Aligned_cols=151  Identities=9%  Similarity=0.057  Sum_probs=95.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHH--HHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVL--GACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll--~~~~~~~   90 (175)
                      |=..|+...+...|.+.|++..+   .|...+......|++..+++.|..+.-.--+. -+.-...++-+-  -.+.+.+
T Consensus       498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea~  576 (1238)
T KOG1127|consen  498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEAH  576 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCcc
Confidence            44555566677788888888765   36677888999999999999999883222111 111112233222  2234556


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCch-hHHHHHH--HHHhcCChHHHHHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVV-TWNALLS--SFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~li~--~~~~~g~~~~a~~~~~~  167 (175)
                      +...+..-|+.-.+-. +-|...|..+..+|.++|.+..|.++|.....-++. +|.-...  .-+-.|...+|+..+..
T Consensus       577 n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~  655 (1238)
T KOG1127|consen  577 NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL  655 (1238)
T ss_pred             chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            6777777777665532 346679999999999999999999999776633222 2222111  12455666666666555


Q ss_pred             H
Q 045063          168 M  168 (175)
Q Consensus       168 m  168 (175)
                      .
T Consensus       656 i  656 (1238)
T KOG1127|consen  656 I  656 (1238)
T ss_pred             H
Confidence            4

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=93.89  E-value=2.4  Score=35.69  Aligned_cols=122  Identities=15%  Similarity=0.050  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMY  121 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~  121 (175)
                      |...-..+.+.+..++|+.-+.+...  +.|-. ..|...-..+...|..++|.+.|..-..  +.|+ +...+++...+
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence            55666777788888888877777633  33333 3555555566677888899888887665  4455 45889999999


Q ss_pred             HhcCChHHHHH--HHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          122 SKYGLLGESVE--AFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       122 ~~~g~~~~a~~--~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      .+.|+-.-|..  ++.++.+  | +...|-.+-..+-+.|+.+.|.+.|.--.
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            99998777777  7777763  4 66789999999999999999999887654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.84  E-value=1.2  Score=29.13  Aligned_cols=123  Identities=9%  Similarity=0.004  Sum_probs=78.1

Q ss_pred             chhhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063           14 TCISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP   90 (175)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~   90 (175)
                      ..++..+.+.+.+......++.+...   +...+|.+|..|++.+ .+..++.+..      ..+.....-++..|.+.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            33777777778888888888776432   4556888888888763 3444444442      123444555777788878


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc-CChHHHHHHHHhccCCCchhHHHHHHHHHh
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKY-GLLGESVEAFKEIEFKDVVTWNALLSSFLR  154 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~li~~~~~  154 (175)
                      -++++..++..+..         |...++.+... ++++.|.+++..  ..+...|..++..+..
T Consensus        84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~--~~~~~lw~~~~~~~l~  137 (140)
T smart00299       84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK--QNNPELWAEVLKALLD  137 (140)
T ss_pred             cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh--CCCHHHHHHHHHHHHc
Confidence            77777777765421         22233333434 778888887776  3355678777776653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.84  E-value=1.6  Score=30.67  Aligned_cols=123  Identities=15%  Similarity=0.024  Sum_probs=72.2

Q ss_pred             HHHHhCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh---
Q 045063           49 FSYTRSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK---  123 (175)
Q Consensus        49 ~~~~~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---  123 (175)
                      ..+.+.|++.+|.+.|++....-. .|- ....-.+..++.+.|+.+.|...++++++.-......-+.-.+.+.+.   
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence            345578999999999999987622 222 236677788999999999999999999875221111222222222221   


Q ss_pred             ----------cCChHHHHHHHHhccC--CCch-----------hHH-------HHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          124 ----------YGLLGESVEAFKEIEF--KDVV-----------TWN-------ALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       124 ----------~g~~~~a~~~~~~m~~--~~~~-----------~~~-------~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                                .+...+|...|+.+..  |++.           ..+       .+..-|.+.|.+..|..-++.+.+.
T Consensus        93 ~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             CccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                      1223456666666552  2211           111       1244577888888888888887653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.61  E-value=1.1  Score=33.23  Aligned_cols=78  Identities=9%  Similarity=0.016  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH-----hCCCcchHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK-----GGTDSEPVVKTA  116 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~  116 (175)
                      .++.-+++.+...|+++.+...+++.... =+-+...|..+|.++.+.|+...|...|.++.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            34566777888888888888888888655 334666888999999999998888888888875     488888888777


Q ss_pred             HHHH
Q 045063          117 LMDM  120 (175)
Q Consensus       117 li~~  120 (175)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            7766

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=93.58  E-value=1.2  Score=29.70  Aligned_cols=87  Identities=14%  Similarity=0.122  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcC-----CCCCHhhHHHHHHHHhcCCC-chhHHHHHHHHHHhCCCcchHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTC-----LNLTAYTFTPVLGACSALPA-PERGKQVHALMIKGGTDSEPVVKTA  116 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~-----~~~~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~  116 (175)
                      ..|+++.-...-+++.....+++.+..-.     -..+..+|.+++++.++... --.+..+|..|++.+.+++..-|..
T Consensus        41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~  120 (145)
T PF13762_consen   41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC  120 (145)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            36888888888889998888888874321     12455689999999987776 5677889999998888999999999


Q ss_pred             HHHHHHhcCChHHH
Q 045063          117 LMDMYSKYGLLGES  130 (175)
Q Consensus       117 li~~~~~~g~~~~a  130 (175)
                      +|.+..+- ...+.
T Consensus       121 li~~~l~g-~~~~~  133 (145)
T PF13762_consen  121 LIKAALRG-YFHDS  133 (145)
T ss_pred             HHHHHHcC-CCCcc
Confidence            99986554 44433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.55  E-value=0.24  Score=24.27  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +|+.|-..|.+.|++++|.++|++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3566667777777777777777763

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.54  E-value=1.3  Score=28.85  Aligned_cols=115  Identities=11%  Similarity=0.080  Sum_probs=78.0

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +...-..+|..+.+.+..+.....++.....+ ..+....+.++..+++... +.....+..      ..+......++.
T Consensus         6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~   77 (140)
T smart00299        6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGK   77 (140)
T ss_pred             CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHH
Confidence            34456778889988889999999999987776 3667788888888887532 333333331      234455566888


Q ss_pred             HHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhc-CChHHHHHHHHH
Q 045063          120 MYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRH-GLAKEAFGVFQA  167 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~  167 (175)
                      .+.+.+.++++..++..+..     |...+..+... ++.+.|.+.+++
T Consensus        78 ~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~  121 (140)
T smart00299       78 LCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK  121 (140)
T ss_pred             HHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence            88888888888888887653     22233333333 677777776665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=93.49  E-value=1.3  Score=37.12  Aligned_cols=120  Identities=12%  Similarity=0.007  Sum_probs=93.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~   91 (175)
                      .-..+.+.++.+.|...+.+...-   ....|.---..+...|.+++|...|....  -+.|+.+ .-+++-.++.+.|+
T Consensus       656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al--~ldP~hv~s~~Ala~~lle~G~  733 (799)
T KOG4162|consen  656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL--ALDPDHVPSMTALAELLLELGS  733 (799)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHhCC
Confidence            566788889999998888877653   33345555556667889999999998874  3567666 77888888999997


Q ss_pred             chhHHH--HHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           92 PERGKQ--VHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        92 ~~~a~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ...+..  ++..+.+.+ +.+...|=.+-..+-+.|+.+.|.+.|+...
T Consensus       734 ~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  734 PRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             cchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            766666  888888754 3567799999999999999999999998754

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.40  E-value=3.4  Score=33.15  Aligned_cols=126  Identities=13%  Similarity=0.047  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHh-----hHHHHHHHHhcC----CCchhHHHHHHHHHHhCCCcchHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAY-----TFTPVLGACSAL----PAPERGKQVHALMIKGGTDSEPVV  113 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~-----t~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~  113 (175)
                      ...+++...=.||-+.+++++.+-.+. ++.....     +|..++..++..    ...+.+.++++.+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            344445555568889999999886543 4443332     455555555543    4668899999998874  588888


Q ss_pred             HHHHH-HHHHhcCChHHHHHHHHhccCC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          114 KTALM-DMYSKYGLLGESVEAFKEIEFK-------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       114 ~~~li-~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      |...- ..+...|++++|.+.|+.....       ....+--+..++.-.+++++|.+.|.++.+.
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            86665 4456799999999999975531       2334445566688899999999999999864

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=93.37  E-value=2.5  Score=31.49  Aligned_cols=115  Identities=12%  Similarity=0.074  Sum_probs=85.3

Q ss_pred             CCCChhHHHHHhhhccC-----CCchhHHHHHHHHHh-CCC-cchHHHHHHHHH-hcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           22 LPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTR-SRN-FPATWALFCYMH-STCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~-~g~-~~~a~~l~~~m~-~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      +...+.+|.++|+....     .|..+-..+++.... .+. ...-.++.+-+. ..|-.++..+..++++.+++.+++.
T Consensus       140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~  219 (292)
T PF13929_consen  140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN  219 (292)
T ss_pred             hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence            44456678888885432     366666777777766 222 222222333332 2357788999999999999999999


Q ss_pred             hHHHHHHHHHHh-CCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           94 RGKQVHALMIKG-GTDSEPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        94 ~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      .-.++|...... +...|..-|..+|+.-...|+..-...++++
T Consensus       220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            999999988865 6677899999999999999999999988876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.14  E-value=0.2  Score=24.52  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHh
Q 045063          113 VKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus       113 ~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      +|..|-..|.+.|++++|.+++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            477888999999999999999987

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.06  E-value=1.8  Score=32.00  Aligned_cols=124  Identities=7%  Similarity=0.009  Sum_probs=84.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhcc----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH-----H
Q 045063           16 ISIADALPKRYVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA-----C   86 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~-----~   86 (175)
                      ++.++---+.+.-...++.+..    +.++..-..+.+.-.+.||.+.|...|++..+..-+.|..+++.++.-     +
T Consensus       183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~  262 (366)
T KOG2796|consen  183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH  262 (366)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence            4444444455544444444443    346777788888888999999999999998877677777777776532     2


Q ss_pred             hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063           87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK  140 (175)
Q Consensus        87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  140 (175)
                      .-..++..+...+.+..... ..|....|+-.-+..-.|+..+|.+.++.|.+.
T Consensus       263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33456777777777776543 234555555555556678999999999999854

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=93.03  E-value=4.5  Score=33.50  Aligned_cols=122  Identities=10%  Similarity=0.079  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS  122 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  122 (175)
                      +-.++..|-+.|+++.|+...+.....  .|+.+ -|..=-..+...|++++|..++++..+.. .+|...-+--.....
T Consensus       374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL  450 (700)
T KOG1156|consen  374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML  450 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            345677888899999999999987433  45554 45555578889999999999999988754 466666667788888


Q ss_pred             hcCChHHHHHHHHhccCCCc--h--------hHHHH--HHHHHhcCChHHHHHHHHHH
Q 045063          123 KYGLLGESVEAFKEIEFKDV--V--------TWNAL--LSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       123 ~~g~~~~a~~~~~~m~~~~~--~--------~~~~l--i~~~~~~g~~~~a~~~~~~m  168 (175)
                      +....++|.++.....+.+.  +        +|-.+  -.+|.|.|++..|+.-|.+.
T Consensus       451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            99999999998877664321  1        34444  33577777777776655443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.97  E-value=1.9  Score=33.44  Aligned_cols=121  Identities=7%  Similarity=-0.047  Sum_probs=81.5

Q ss_pred             HHHHhCCCcchHHHHHHHHHhc-----CCC---------CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHH
Q 045063           49 FSYTRSRNFPATWALFCYMHST-----CLN---------LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVK  114 (175)
Q Consensus        49 ~~~~~~g~~~~a~~l~~~m~~~-----~~~---------~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  114 (175)
                      +.|.|.|++..|...|++....     +..         +-...++.+.-++.+.+++..|.+.-....... ++|....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            3567888888888888885432     121         123467777788888899998888887777653 4555544


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChH-HHHHHHHHHHh
Q 045063          115 TALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAK-EAFGVFQAMTR  170 (175)
Q Consensus       115 ~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~  170 (175)
                      =---.++...|+++.|+..|+.+.  +| |-.+-+-|+.+--+..+.. +..++|..|..
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445677888899999999999887  45 4445555666544544443 33566777653

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.84  E-value=2.8  Score=36.80  Aligned_cols=135  Identities=10%  Similarity=0.011  Sum_probs=81.9

Q ss_pred             cchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           13 KTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      |+.+-.+-.+.|.+.+|.+-|  ++..|...|--+|....+.|.+++-.+.+.-.++..-.|...  +.|+-++++.+++
T Consensus      1107 WsqlakAQL~~~~v~dAieSy--ikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESY--IKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred             HHHHHHHHHhcCchHHHHHHH--HhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchH
Confidence            444666666677777776655  334577788899999999999988887766555555555443  3677778888776


Q ss_pred             hhHHHHHHHHHHhCCCcchHH--------------------------HHHHHHHHHhcCChHHHHHHHHhccCCCchhHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVV--------------------------KTALMDMYSKYGLLGESVEAFKEIEFKDVVTWN  146 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~--------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  146 (175)
                      .+.+.+..       .||...                          |.-|.......|++..|...-+.  ..+..||-
T Consensus      1183 ~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRK--Ans~ktWK 1253 (1666)
T KOG0985|consen 1183 TELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARK--ANSTKTWK 1253 (1666)
T ss_pred             HHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--ccchhHHH
Confidence            66554432       233333                          34444444445554444332221  23566777


Q ss_pred             HHHHHHHhcCChHH
Q 045063          147 ALLSSFLRHGLAKE  160 (175)
Q Consensus       147 ~li~~~~~~g~~~~  160 (175)
                      .+--+|+..+.+.-
T Consensus      1254 ~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRL 1267 (1666)
T ss_pred             HHHHHHhchhhhhH
Confidence            77777666654443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=92.77  E-value=0.68  Score=37.06  Aligned_cols=100  Identities=14%  Similarity=0.045  Sum_probs=68.1

Q ss_pred             hhcCCCChhHHHHHhhhcc---CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchh
Q 045063           19 ADALPKRYVYTHQVFDEIS---HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPER   94 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~   94 (175)
                      +-...|+++.|..+|-...   .+|.+.|..=..+|.+.|++++|++==.+-  ..+.|+-. -|+-.-.+..-.|++++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~--~~l~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT--RRLNPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHH--HhcCCchhhHHHHhHHHHHhcccHHH
Confidence            3456788888888887643   346777888888888888887776533332  34556643 67777777777788888


Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           95 GKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        95 a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      |...|.+=.+.. +.+...++-+.+++
T Consensus        89 A~~ay~~GL~~d-~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   89 AILAYSEGLEKD-PSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence            888877655432 34456777777777

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.59  E-value=0.95  Score=33.74  Aligned_cols=88  Identities=14%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             CCCCCHhhHHHHHHHHhcC-----CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC----------------ChHH
Q 045063           71 CLNLTAYTFTPVLGACSAL-----PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG----------------LLGE  129 (175)
Q Consensus        71 ~~~~~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~  129 (175)
                      +-+-|-.+|...+..+...     +.++-....+..|.+.|+.-|..+|+.||+.+-+-.                +-.-
T Consensus        62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C  141 (406)
T KOG3941|consen   62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC  141 (406)
T ss_pred             cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence            4456777888888777543     467777888889999999999999999999986543                2334


Q ss_pred             HHHHHHhcc----CCCchhHHHHHHHHHhcCCh
Q 045063          130 SVEAFKEIE----FKDVVTWNALLSSFLRHGLA  158 (175)
Q Consensus       130 a~~~~~~m~----~~~~~~~~~li~~~~~~g~~  158 (175)
                      +..++++|.    .||--+-.+||.+|.+.|-.
T Consensus       142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence            778888887    57888999999999988753

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.58  E-value=0.39  Score=24.62  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          113 VKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       113 ~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +|..+...|.+.|++++|.++|+...
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l   28 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRAL   28 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555566666666666666666654

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=92.31  E-value=1.5  Score=26.36  Aligned_cols=67  Identities=12%  Similarity=0.047  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHH
Q 045063           95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      +.++++.+.+.|+ .+......+-.+-...|..+.|.+++..++ +....|...++++-.+|..+-|.+
T Consensus        21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e   87 (88)
T cd08819          21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE   87 (88)
T ss_pred             HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence            4566677777664 344445555544456788899999999988 888889999999988888776654

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=92.25  E-value=1.9  Score=28.71  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=69.6

Q ss_pred             HHhhcCCCcc------hhhhhhcCCCChhHHHHHhhhccC---------CCchhHHHHHHHHHhCCC-cchHHHHHHHHH
Q 045063            5 IRMTNFPAKT------CISIADALPKRYVYTHQVFDEISH---------GDLSSLNSQLFSYTRSRN-FPATWALFCYMH   68 (175)
Q Consensus         5 ~~~~~~~~~~------~ll~~~~~~~~~~~a~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~   68 (175)
                      +...+..+.+      ++|...+..++..-..++++.+..         .+-.+|.+++.+.++... --.+..+|..|+
T Consensus        28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk  107 (145)
T PF13762_consen   28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK  107 (145)
T ss_pred             hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            3444555543      277777888888888888887742         366779999999977766 457889999999


Q ss_pred             hcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           69 STCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        69 ~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      +.+.+++..-|..+++++.+....+..
T Consensus       108 ~~~~~~t~~dy~~li~~~l~g~~~~~~  134 (145)
T PF13762_consen  108 KNDIEFTPSDYSCLIKAALRGYFHDSL  134 (145)
T ss_pred             HcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence            988999999999999999886444433

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=92.11  E-value=0.26  Score=32.17  Aligned_cols=32  Identities=13%  Similarity=0.091  Sum_probs=25.6

Q ss_pred             hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063           53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC   86 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~   86 (175)
                      +.|+-.+|..+|..|+++|-+||.  |+.|+..+
T Consensus       107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a  138 (140)
T PF11663_consen  107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA  138 (140)
T ss_pred             hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence            446678899999999999998886  67777654

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.91  E-value=3.9  Score=30.10  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCC--CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--CcchHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL--NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGT--DSEPVVKTALM  118 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li  118 (175)
                      .|+.-+..+ +.|++.+|...|....+...  .-....+-=|-.++...|+.+.|..+|..+.+.-.  +--....--|-
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            488777766 67778889888888876521  11222344467888888888888888888886421  11124555666


Q ss_pred             HHHHhcCChHHHHHHHHhccCC
Q 045063          119 DMYSKYGLLGESVEAFKEIEFK  140 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~~~  140 (175)
                      .+..+.|+.++|...|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            7777888888888888877643

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.63  E-value=1.8  Score=31.76  Aligned_cols=88  Identities=10%  Similarity=-0.011  Sum_probs=67.8

Q ss_pred             hhhcCCCChhHHHHHhhhccC--C-C---chhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH-hhHHHHHHHHhcC
Q 045063           18 IADALPKRYVYTHQVFDEISH--G-D---LSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA-YTFTPVLGACSAL   89 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~-~t~~~ll~~~~~~   89 (175)
                      ..+.+.|++..|...|....+  | +   ...+==|-+++...|++++|-..|..+.+. +=.|.. .+.-=|-.+..+.
T Consensus       149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l  228 (262)
T COG1729         149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL  228 (262)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence            345688999999999998864  2 2   223445789999999999999999999765 323333 3555666778889


Q ss_pred             CCchhHHHHHHHHHHh
Q 045063           90 PAPERGKQVHALMIKG  105 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~  105 (175)
                      |+.++|..+|+++.+.
T Consensus       229 ~~~d~A~atl~qv~k~  244 (262)
T COG1729         229 GNTDEACATLQQVIKR  244 (262)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=91.46  E-value=0.88  Score=30.93  Aligned_cols=84  Identities=7%  Similarity=-0.083  Sum_probs=45.7

Q ss_pred             hcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHH
Q 045063           20 DALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGK   96 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~   96 (175)
                      +...|++++|..+|+-+..  + +..-|.-|-.++-..+.++.|.+.|...-..+. -|...+-..-.|+...|+.+.|+
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence            3456777777777766542  2 333344444555555677777777766432211 11222334445566666777777


Q ss_pred             HHHHHHHH
Q 045063           97 QVHALMIK  104 (175)
Q Consensus        97 ~~~~~m~~  104 (175)
                      ..|+..+.
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            76666655

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=91.45  E-value=4.2  Score=29.56  Aligned_cols=127  Identities=6%  Similarity=-0.030  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      |. ....+.+.|++++|.+.|++....-..+...  ..-.+..++.+.++.++|...+++..+.-..-...-+.-.+.+.
T Consensus        36 Y~-~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         36 YA-TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HH-HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            44 3444567899999999999997752222221  22345677789999999999999999753222222333344333


Q ss_pred             Hh-----------------cCCh---HHHHHHHHhccC--CCch-----------h------HHH-HHHHHHhcCChHHH
Q 045063          122 SK-----------------YGLL---GESVEAFKEIEF--KDVV-----------T------WNA-LLSSFLRHGLAKEA  161 (175)
Q Consensus       122 ~~-----------------~g~~---~~a~~~~~~m~~--~~~~-----------~------~~~-li~~~~~~g~~~~a  161 (175)
                      +.                 ..+.   .+|...|+...+  ||+.           .      ... +..-|.+.|.+..|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA  194 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV  194 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            21                 1122   345555555542  2211           1      111 23347788999888


Q ss_pred             HHHHHHHHhc
Q 045063          162 FGVFQAMTRE  171 (175)
Q Consensus       162 ~~~~~~m~~~  171 (175)
                      ..-|+.+.++
T Consensus       195 ~~r~~~v~~~  204 (243)
T PRK10866        195 VNRVEQMLRD  204 (243)
T ss_pred             HHHHHHHHHH
Confidence            8888888753

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.40  E-value=2.9  Score=27.59  Aligned_cols=88  Identities=10%  Similarity=0.021  Sum_probs=62.8

Q ss_pred             HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh-CCCcchH---HHHHHHHHHHhc
Q 045063           49 FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG-GTDSEPV---VKTALMDMYSKY  124 (175)
Q Consensus        49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~---~~~~li~~~~~~  124 (175)
                      -+....|+.++|++.|.+.... .+-....||.--.++.-.|+.++|..=+.+..+. |-+ +..   .|..--..|...
T Consensus        51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence            4567789999999999987665 3345668888888888889988888777776653 322 222   333334567788


Q ss_pred             CChHHHHHHHHhcc
Q 045063          125 GLLGESVEAFKEIE  138 (175)
Q Consensus       125 g~~~~a~~~~~~m~  138 (175)
                      |+.|.|..-|+..-
T Consensus       129 g~dd~AR~DFe~AA  142 (175)
T KOG4555|consen  129 GNDDAARADFEAAA  142 (175)
T ss_pred             CchHHHHHhHHHHH
Confidence            88888888887653

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=91.29  E-value=2.4  Score=26.43  Aligned_cols=79  Identities=14%  Similarity=0.212  Sum_probs=52.2

Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..++|..+-+.+...+-. ...+--+-+......|++++|..+.+...-||...|-+|-.  .|.|..+++..-+.+|..
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~   96 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA   96 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence            356777776666544321 22222333466778899999998888888888888888755  467777777766666655


Q ss_pred             cc
Q 045063          171 ER  172 (175)
Q Consensus       171 ~g  172 (175)
                      .|
T Consensus        97 sg   98 (115)
T TIGR02508        97 SG   98 (115)
T ss_pred             CC
Confidence            44

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.23  E-value=3.9  Score=28.82  Aligned_cols=72  Identities=17%  Similarity=0.115  Sum_probs=32.7

Q ss_pred             chHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh---CCCcchHHHHHHHHHHHhcCChHHH
Q 045063           58 PATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG---GTDSEPVVKTALMDMYSKYGLLGES  130 (175)
Q Consensus        58 ~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a  130 (175)
                      ++|++.|-++...+..-++..... +..+....+.+++.+++-+..+.   +-.+|+..+.+|+..|.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            455555555554443322222222 22233344455555555544421   2234455555555555555555554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=91.14  E-value=5.8  Score=30.62  Aligned_cols=49  Identities=8%  Similarity=0.006  Sum_probs=26.5

Q ss_pred             hhcCCCChhHHHHHhhhccCCCchhHHHHH---HHHHhCCCcchHHHHHHHH
Q 045063           19 ADALPKRYVYTHQVFDEISHGDLSSLNSQL---FSYTRSRNFPATWALFCYM   67 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~a~~l~~~m   67 (175)
                      .+...|++.+|...|....+-|...|-++.   ..|...|+...|+.=+.+.
T Consensus        47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV   98 (504)
T KOG0624|consen   47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRV   98 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence            344566677777777666555554444443   3444455555555544444

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=91.03  E-value=3.3  Score=30.80  Aligned_cols=91  Identities=10%  Similarity=0.078  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      ...=|.++++.|++.+++.-.-+--+.  .++|..--..+++  |++.+.+..+.++-....+.--.-+..-|.++++.|
T Consensus        86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy  163 (309)
T PF07163_consen   86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY  163 (309)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence            344589999999999998877665443  4545444444444  889999999988888877643334455688888888


Q ss_pred             Hh-----cCChHHHHHHHHh
Q 045063          122 SK-----YGLLGESVEAFKE  136 (175)
Q Consensus       122 ~~-----~g~~~~a~~~~~~  136 (175)
                      ..     .|.+++|+++...
T Consensus       164 Ll~VLlPLG~~~eAeelv~g  183 (309)
T PF07163_consen  164 LLHVLLPLGHFSEAEELVVG  183 (309)
T ss_pred             HHHHHhccccHHHHHHHHhc
Confidence            65     7999999988753

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.02  E-value=0.66  Score=23.71  Aligned_cols=28  Identities=25%  Similarity=0.356  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +|..+-..|.+.|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5778889999999999999999998764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.99  E-value=5.1  Score=34.54  Aligned_cols=137  Identities=12%  Similarity=-0.003  Sum_probs=87.1

Q ss_pred             hhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CC--------CCC-HhhHHHHHHHHh
Q 045063           18 IADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST-CL--------NLT-AYTFTPVLGACS   87 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~--------~~~-~~t~~~ll~~~~   87 (175)
                      +.|...|+.|.|.+-++.++  +...|..|-+.|.+.++++-|.--+-.|.+. |.        .|+ ...-..++  ..
T Consensus       736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL--Ai  811 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL--AI  811 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH--HH
Confidence            45778899998887776554  4467999999999998888887777777542 21        122 11212222  34


Q ss_pred             cCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-DVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      ..|.+++|..+|.+.++.         ..|=..|-..|.+++|.++-+.=.+- =-.||...-.-+-..++.+.|++.|+
T Consensus       812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE  882 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE  882 (1416)
T ss_pred             HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            678889999998887653         33445566788888888877653321 11244444444445667777777666


Q ss_pred             H
Q 045063          167 A  167 (175)
Q Consensus       167 ~  167 (175)
                      +
T Consensus       883 K  883 (1416)
T KOG3617|consen  883 K  883 (1416)
T ss_pred             h
Confidence            4

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=90.93  E-value=4.2  Score=28.61  Aligned_cols=97  Identities=8%  Similarity=0.004  Sum_probs=54.3

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC---CCcchHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG---TDSEPVVKTA  116 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~  116 (175)
                      .+..---|-.+..+.|+..+|...|.+...--+--|......+-++....+++..+...++.+-+..   -.||.  .-.
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll  165 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLL  165 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHH
Confidence            3333445556666667777777766665544343444556666666666666666666666665432   12222  223


Q ss_pred             HHHHHHhcCChHHHHHHHHhcc
Q 045063          117 LMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       117 li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +-..|...|..++|+..|+...
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~  187 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAI  187 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHH
Confidence            4455556666666666665543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=90.90  E-value=4.2  Score=28.59  Aligned_cols=117  Identities=14%  Similarity=0.052  Sum_probs=82.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCCHhhHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHST---CLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~t~~~ll~~~~~   88 (175)
                      |-.+....|+..+|...|.+...    .|....-.+-++....+++..|...+++.-+.   +-.||.  -..+-..+..
T Consensus        95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa  172 (251)
T COG4700          95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTLAA  172 (251)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHHHh
Confidence            77888889999999999988654    46666677777788889999999999887554   333443  3344566777


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      .|..+.|+..|+....  +.|+...-.-.-....+.|+.+++..-+..
T Consensus       173 ~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         173 QGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             cCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            8888889999988877  456655444444556677766666544333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.89  E-value=5.8  Score=33.92  Aligned_cols=116  Identities=9%  Similarity=-0.059  Sum_probs=74.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchh---HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSS---LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      -|+...+-..++.|..+-..-..+....   .-..-..+.+.|++++|.+-|.+-... +.|+     .++.-+....+.
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~I  413 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRI  413 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHH
Confidence            3444445555555555544433222222   223334455789999999999886443 3343     345555666666


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ..-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++++...
T Consensus       414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            6777777888888874 56667889999999999998888887765

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=90.85  E-value=3.4  Score=27.42  Aligned_cols=79  Identities=9%  Similarity=-0.066  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhc-CC-CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHST-CL-NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~-~~-~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      |+.-..++ +.|++++|.+.|+....+ .. +-...+...++.++.+.+++++|...+++.++.....--.-|.-.+.++
T Consensus        14 y~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   14 YQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            44433333 667888888888887665 11 1223466677777788888888888888887754322223455555554


Q ss_pred             Hh
Q 045063          122 SK  123 (175)
Q Consensus       122 ~~  123 (175)
                      +.
T Consensus        93 ~~   94 (142)
T PF13512_consen   93 SY   94 (142)
T ss_pred             HH
Confidence            43

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=90.78  E-value=2.7  Score=27.85  Aligned_cols=68  Identities=6%  Similarity=0.052  Sum_probs=50.5

Q ss_pred             cCCCChhHHHHHhhhccCC------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           21 ALPKRYVYTHQVFDEISHG------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      .+.|+++.|.+.|+.+...      ....---++.+|.+.|++++|...+++.++....=..+-|...+.+++.
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            4789999999999998642      3345677899999999999999999998765332222455555555553

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.71  E-value=3.6  Score=33.06  Aligned_cols=111  Identities=11%  Similarity=-0.015  Sum_probs=72.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC------------------------CCch--h--HHHHHHHHHhCCCcchHHHHHHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH------------------------GDLS--S--LNSQLFSYTRSRNFPATWALFCYM   67 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~------------------------~~~~--~--~~~li~~~~~~g~~~~a~~l~~~m   67 (175)
                      +|-+--.+..+.+++++|++..+                        +++.  .  -.-+-.+..+.|+.++|.+.|.+|
T Consensus       206 ILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdL  285 (539)
T PF04184_consen  206 ILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDL  285 (539)
T ss_pred             hhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHH
Confidence            55555566778888888887632                        1211  1  133556677889999999999998


Q ss_pred             HhcCC-CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCC
Q 045063           68 HSTCL-NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGL  126 (175)
Q Consensus        68 ~~~~~-~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~  126 (175)
                      .+..- .-.....-.|+.++...+...++..++.+-.+...+.+ ...|+..+-.+...|+
T Consensus       286 lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d  346 (539)
T PF04184_consen  286 LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGD  346 (539)
T ss_pred             HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcc
Confidence            76532 22334777889999999999999999888754333222 3467776655444443

The molecular function of this protein is uncertain.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.63  E-value=5.2  Score=29.24  Aligned_cols=149  Identities=12%  Similarity=0.125  Sum_probs=98.1

Q ss_pred             hcCCCChhHHHHHhhhccC--C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH--hhHHHHHHHHhcCC
Q 045063           20 DALPKRYVYTHQVFDEISH--G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA--YTFTPVLGACSALP   90 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~--~t~~~ll~~~~~~~   90 (175)
                      -.+.|++++|.+.|+.+..  |    ...+--.++.++.+.+++++|....++..+. +-.||.  +.|.-.+..+....
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~  123 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID  123 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence            3478999999999999864  2    2233456678888999999999999997655 555554  35555555444433


Q ss_pred             ----CchhHHHHHHHHH---Hh----CCCcchHH----H--------HHHHHHHHhcCChHHHHHHHHhccCC---Cc--
Q 045063           91 ----APERGKQVHALMI---KG----GTDSEPVV----K--------TALMDMYSKYGLLGESVEAFKEIEFK---DV--  142 (175)
Q Consensus        91 ----~~~~a~~~~~~m~---~~----~~~~~~~~----~--------~~li~~~~~~g~~~~a~~~~~~m~~~---~~--  142 (175)
                          +...+.+.+..+.   ++    ...||...    .        -.+...|.+.|.+..|..=+++|.+.   ..  
T Consensus       124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~  203 (254)
T COG4105         124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV  203 (254)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence                4455555555554   22    22333321    1        23446778999999888888888743   22  


Q ss_pred             -hhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          143 -VTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       143 -~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                       ...-.|..+|.+.|..++|...-.-+
T Consensus       204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl  230 (254)
T COG4105         204 REALARLEEAYYALGLTDEAKKTAKVL  230 (254)
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence             24556788999999998888764433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.60  E-value=2.9  Score=33.21  Aligned_cols=128  Identities=11%  Similarity=0.070  Sum_probs=77.3

Q ss_pred             CCCChhHHHHHhhhccCC---C------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH--hcCC
Q 045063           22 LPKRYVYTHQVFDEISHG---D------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC--SALP   90 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~---~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~--~~~~   90 (175)
                      +.+++..+.++|.++-+.   +      .+.-+-+|++|... +++.......+..+.  .| ...|-+++.+.  .+.+
T Consensus        18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k   93 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK   93 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence            567888899999887532   2      22246777887654 444444444444333  12 33455555544  4567


Q ss_pred             CchhHHHHHHHHHHh--CCCc------------chHHHHHHHHHHHhcCChHHHHHHHHhccC--------CCchhHHHH
Q 045063           91 APERGKQVHALMIKG--GTDS------------EPVVKTALMDMYSKYGLLGESVEAFKEIEF--------KDVVTWNAL  148 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~l  148 (175)
                      ...+|.+.+......  +..|            |...=+..+++....|.+.+++.+++.|..        -|+.+||-+
T Consensus        94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~  173 (549)
T PF07079_consen   94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA  173 (549)
T ss_pred             hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence            777777776666543  2222            222235667788888999998888888762        277778774


Q ss_pred             HHHHH
Q 045063          149 LSSFL  153 (175)
Q Consensus       149 i~~~~  153 (175)
                      +-.+.
T Consensus       174 vlmls  178 (549)
T PF07079_consen  174 VLMLS  178 (549)
T ss_pred             HHHHh
Confidence            44333

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.37  E-value=2.9  Score=28.79  Aligned_cols=100  Identities=11%  Similarity=-0.007  Sum_probs=68.2

Q ss_pred             hcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhccCC--Cch
Q 045063           69 STCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIEFK--DVV  143 (175)
Q Consensus        69 ~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~  143 (175)
                      ++.++-+.. .+..+-+.+++.|+.+.|.+.+.++.+....+..  ..+-.+|......|++..+...+......  ...
T Consensus        28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~  107 (177)
T PF10602_consen   28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG  107 (177)
T ss_pred             hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence            344444443 7888888999999999999999998876554443  46788888888899999988888776633  111


Q ss_pred             hHHHH-----HHH--HHhcCChHHHHHHHHHH
Q 045063          144 TWNAL-----LSS--FLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       144 ~~~~l-----i~~--~~~~g~~~~a~~~~~~m  168 (175)
                      -|..-     ..|  +...|++..|.+.|-+.
T Consensus       108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             hHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence            13222     222  33667888888887654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.18  E-value=5.3  Score=33.71  Aligned_cols=105  Identities=11%  Similarity=0.069  Sum_probs=70.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      .+.-+...|+...|.++-.+++-||-..|=.=+.+++..+++++-+++=..++.      ..=|...+.+|.+.|+..+|
T Consensus       690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA  763 (829)
T KOG2280|consen  690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEA  763 (829)
T ss_pred             HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHH
Confidence            445555677777788887777777777777777788887777766655554421      33455567778888888777


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFK  135 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  135 (175)
                      ...+.+.     .+..    -.+.+|.+.|++.+|.++--
T Consensus       764 ~KYiprv-----~~l~----ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  764 KKYIPRV-----GGLQ----EKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             hhhhhcc-----CChH----HHHHHHHHhccHHHHHHHHH
Confidence            7776542     1111    56777777777777765443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.09  E-value=0.92  Score=22.36  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=15.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +++.|-..|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            45566666666666666666666654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.05  E-value=0.6  Score=23.08  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=19.8

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMH   68 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~   68 (175)
                      .+++.|-..|...|++++|..++.+..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            456777788888888888888887764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.78  E-value=6.9  Score=29.32  Aligned_cols=143  Identities=13%  Similarity=0.042  Sum_probs=89.4

Q ss_pred             HHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC
Q 045063           28 YTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGT  107 (175)
Q Consensus        28 ~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  107 (175)
                      ...+.+++...+....--.--......|++.+|..+|+......- -+...-..+..++...|+.+.|..++..+...--
T Consensus       121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            444555554433222222223455678999999999999876522 2244566778899999999999999998764322


Q ss_pred             CcchHHHHHHHHHHHhcCChHHHHHHHHhcc-CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          108 DSEPVVKTALMDMYSKYGLLGESVEAFKEIE-FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       108 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .........-|..+.+.....+...+-.... .| |...=-.+-..+...|+.+.|.+.+-.+.++
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2222233344555555555555544444433 45 4445555667788899999999888777654

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.68  E-value=4.9  Score=27.47  Aligned_cols=125  Identities=10%  Similarity=0.021  Sum_probs=89.1

Q ss_pred             CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063           38 HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL  117 (175)
Q Consensus        38 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  117 (175)
                      .++...|..+|+.+.+.|.    ...+..+.+.++-+|.......+-....  ..+.+.++=-.|.++ +   ...+..+
T Consensus        26 ~~~~~L~~lli~lLi~~~~----~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-L---~~~~~~i   95 (167)
T PF07035_consen   26 PVQHELYELLIDLLIRNGQ----FSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-L---GTAYEEI   95 (167)
T ss_pred             CCCHHHHHHHHHHHHHcCC----HHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-h---hhhHHHH
Confidence            4677789999999999887    4456667777888888877766644433  345566665555543 1   1246677


Q ss_pred             HHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 045063          118 MDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRER  172 (175)
Q Consensus       118 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  172 (175)
                      ++.+...|++-+|.++.+....-+...-..++.+-.+.+|...=..+|+-..++|
T Consensus        96 ievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   96 IEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            8889999999999999998766666677788888888888776666666555544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=89.54  E-value=9.5  Score=30.82  Aligned_cols=76  Identities=8%  Similarity=0.059  Sum_probs=55.3

Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHhCCC-cchHHHHHHHHHHHhcCChHHHHHHHHhccC---CC--chhHHHHHHHHHhc
Q 045063           82 VLGACSALPAPERGKQVHALMIKGGTD-SEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KD--VVTWNALLSSFLRH  155 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~--~~~~~~li~~~~~~  155 (175)
                      +-.++-+.|+.++|...+.+|.+.... -+..+.-.|++++...+.+.++..++..-.+   |.  ...|+..+-.+-+.
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav  344 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV  344 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence            445556789999999999999875322 2455889999999999999999999987653   22  34577765544444


Q ss_pred             CC
Q 045063          156 GL  157 (175)
Q Consensus       156 g~  157 (175)
                      |+
T Consensus       345 ~d  346 (539)
T PF04184_consen  345 GD  346 (539)
T ss_pred             cc
Confidence            43

The molecular function of this protein is uncertain.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.31  E-value=2.3  Score=26.49  Aligned_cols=43  Identities=12%  Similarity=0.101  Sum_probs=21.2

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +.-+..+....+.|+..+..+-+.++.|.+++..|.++|+.++
T Consensus        30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333344444455566666666666666666666666665554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.30  E-value=2.2  Score=32.34  Aligned_cols=88  Identities=5%  Similarity=-0.070  Sum_probs=65.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC-------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG-------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      ++..-....+++.+...+=+++..       +...+ +.+.-+. .-+.++++.+...-.+.|+-||-.+++.+|+.+.+
T Consensus        70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk  147 (418)
T KOG4570|consen   70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK  147 (418)
T ss_pred             hhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence            444555567888888887777642       22222 2222222 33678999999998999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHh
Q 045063           89 LPAPERGKQVHALMIKG  105 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~  105 (175)
                      .++..+|.++...|...
T Consensus       148 ~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  148 KENYKDAASVVTEVMMQ  164 (418)
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            99999999888887743

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=89.25  E-value=7.5  Score=29.03  Aligned_cols=96  Identities=11%  Similarity=0.050  Sum_probs=74.0

Q ss_pred             CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc---CChHHHHHHHHhccC--C-CchhHHHH
Q 045063           75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY---GLLGESVEAFKEIEF--K-DVVTWNAL  148 (175)
Q Consensus        75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~--~-~~~~~~~l  148 (175)
                      |...|-.|-..+...|+.+.|..-|..-.+.. .++...+..+..++...   .+-.++..+|++...  | |+..-..|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            44589999999999999999999999988742 34555666665555432   245578999999873  4 56667777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhc
Q 045063          149 LSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       149 i~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      --.+...|++.+|...|+.|...
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc
Confidence            77889999999999999999764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=89.17  E-value=2.9  Score=36.41  Aligned_cols=124  Identities=14%  Similarity=0.047  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc---hHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKGGTDSE---PVVKTAL  117 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l  117 (175)
                      ..|..|-..|+...+...|.+-|...-+  +.|+. ..+..+.+.+++..+++.|..+.-..-+  ..|-   ..-|-..
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~r  568 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQR  568 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhc
Confidence            3477777777766666666666666522  33333 3677777778888888888777222222  1111   1122223


Q ss_pred             HHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          118 MDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       118 i~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      =-.|.+.+.+.+|..-|+.-.  .| |.-.|..+..+|.+.|+...|...|.+..
T Consensus       569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            334556777777777776654  23 77789999999999999999999997643

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.64  E-value=6.3  Score=27.36  Aligned_cols=118  Identities=9%  Similarity=-0.016  Sum_probs=49.5

Q ss_pred             hCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH-HHHHHHHHH--HhcCChH
Q 045063           53 RSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV-VKTALMDMY--SKYGLLG  128 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~--~~~g~~~  128 (175)
                      +.|..++|+.-|.+..+.|..--.+ .-.-.-....+.|+...|-..|++.-...-.|-.. -..-|=.+|  ...|.++
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3444555555555555443322111 11111122344555555555555554433223222 111222222  3455555


Q ss_pred             HHHHHHHhccCC-C---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          129 ESVEAFKEIEFK-D---VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       129 ~a~~~~~~m~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +...-.+.+..+ +   ...-.+|--+-.+.|++..|.++|.++.+
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            555555444322 1   11223344444455555555555555543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.47  E-value=6.1  Score=27.01  Aligned_cols=99  Identities=4%  Similarity=-0.035  Sum_probs=68.8

Q ss_pred             HHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCch
Q 045063           64 FCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVV  143 (175)
Q Consensus        64 ~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  143 (175)
                      .....+.+++|+...+..+++.+.+.|.....    .++.+.++-+|.......+-.+..  .+..+.++=-.|.++=..
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~   90 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT   90 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh
Confidence            33445678999999999999999999986554    444566777887766666644443  233444444444444334


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      .+..+++.+...|++-+|.++.++.
T Consensus        91 ~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   91 AYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            5777888888899999999988774

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.40  E-value=5  Score=26.50  Aligned_cols=63  Identities=11%  Similarity=0.144  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063          111 PVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV  173 (175)
Q Consensus       111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  173 (175)
                      ..-...-++.....|+-|.-.++..++.   +++....-.+-.+|.+.|+..++.+++++--+.|+
T Consensus        86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3444555566666666666666666654   44555555566677777777777777777666665

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.39  E-value=6.7  Score=33.57  Aligned_cols=80  Identities=9%  Similarity=-0.016  Sum_probs=54.0

Q ss_pred             hcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHH
Q 045063           20 DALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVH   99 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~   99 (175)
                      +.+.|++++|-.-+-+--.  ..-=..+|.-|..+.++.+--..++...+.|+ .+...-+.|+++|.+.++.+...++.
T Consensus       378 Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI  454 (933)
T KOG2114|consen  378 LYGKGDFDEATDQYIETIG--FLEPSEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFI  454 (933)
T ss_pred             HHhcCCHHHHHHHHHHHcc--cCChHHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHH
Confidence            3456777777666644321  11124567777777777888888888888877 55566678889999988887777665


Q ss_pred             HHH
Q 045063          100 ALM  102 (175)
Q Consensus       100 ~~m  102 (175)
                      +.-
T Consensus       455 ~~~  457 (933)
T KOG2114|consen  455 SKC  457 (933)
T ss_pred             hcC
Confidence            543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=88.37  E-value=14  Score=31.08  Aligned_cols=57  Identities=18%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhccC--CCch-----------hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          115 TALMDMYSKYGLLGESVEAFKEIEF--KDVV-----------TWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       115 ~~li~~~~~~g~~~~a~~~~~~m~~--~~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      ..+++.....+++++|+.+-+..++  +|+.           -|.---.+|-+.|+-.+|.++++++...
T Consensus       777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence            4567778888999999998888773  3433           2444567899999999999999998654

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=87.60  E-value=2.6  Score=26.50  Aligned_cols=56  Identities=5%  Similarity=-0.082  Sum_probs=38.6

Q ss_pred             cchhhhhhcCCCChhHHHHHhhhccC----------CCchhHHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063           13 KTCISIADALPKRYVYTHQVFDEISH----------GDLSSLNSQLFSYTRSRNFPATWALFCYMHS   69 (175)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~f~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~   69 (175)
                      +++|+.+|... +......+++.-..          ....-|..++.-|...|.+++|++++.+...
T Consensus         2 DTaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen    2 DTALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             cHHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            45667777777 66666666553211          1233588888888888888899988888765

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.53  E-value=7.5  Score=30.34  Aligned_cols=117  Identities=8%  Similarity=0.018  Sum_probs=84.4

Q ss_pred             hhcCCCChhHHHHHhhhccC------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHH
Q 045063           19 ADALPKRYVYTHQVFDEISH------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFT   80 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~   80 (175)
                      .|.+.|++..|...|+....                  .-..+++.+.-++.|.+++..|+..=...+..+ ++|....-
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy  295 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY  295 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence            56788999999998887431                  124568899999999999999998888876542 24444444


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhCCCcchHH-HHHHHHHHHhcCChHH-HHHHHHhcc
Q 045063           81 PVLGACSALPAPERGKQVHALMIKGGTDSEPVV-KTALMDMYSKYGLLGE-SVEAFKEIE  138 (175)
Q Consensus        81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~-a~~~~~~m~  138 (175)
                      -=-.++...|+++.|+..|+.+++  +.|+-.. -+.|+..--+.....+ ..++|..|-
T Consensus       296 RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445778888999999999999998  4566554 4555555555555544 467777775

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.46  E-value=7  Score=26.52  Aligned_cols=110  Identities=9%  Similarity=0.052  Sum_probs=59.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhcc--CCCchhHH-HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEIS--HGDLSSLN-SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~--~~~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +++.-.+.++.+++..+++-+.  .|...... .--.-+.+.|++.+|..+|++..+..  |.......|+..|.....-
T Consensus        16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence            4555567778888888888775  34332221 12233456788999999999875553  3444445566666554433


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGES  130 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  130 (175)
                      ..=+..-++..+.+-.|+..   .++..+....+...|
T Consensus        94 ~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a  128 (160)
T PF09613_consen   94 PSWRRYADEVLESGADPDAR---ALVRALLARADLEPA  128 (160)
T ss_pred             hHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccch
Confidence            33333334444444333332   344444444444333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.31  E-value=2  Score=20.17  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=19.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +|..+-.+|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            566677777777888888777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.29  E-value=9.9  Score=30.41  Aligned_cols=117  Identities=11%  Similarity=0.036  Sum_probs=77.5

Q ss_pred             HhCCCcchHHHHHHHHHhcCCC-C---C-HhhHHHHHHHHhcCCCchhHHHHHHHHHH-hCCCcchHHHHHHHHHHHhcC
Q 045063           52 TRSRNFPATWALFCYMHSTCLN-L---T-AYTFTPVLGACSALPAPERGKQVHALMIK-GGTDSEPVVKTALMDMYSKYG  125 (175)
Q Consensus        52 ~~~g~~~~a~~l~~~m~~~~~~-~---~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g  125 (175)
                      -+.+++.+|..+|.+.-...-. |   . .+.-+-+++++... +.+........+.+ .|-.+....|-.++.  -+.|
T Consensus        17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~--Y~~k   93 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVA--YKQK   93 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHhh
Confidence            3678999999999998554211 1   1 33566788888754 44555555566654 343444444444443  3778


Q ss_pred             ChHHHHHHHHhccCC------------------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          126 LLGESVEAFKEIEFK------------------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       126 ~~~~a~~~~~~m~~~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      ++.+|.+.+..-...                  |..-=++.+.++...|+++++..++++|.++
T Consensus        94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            889888877665421                  2233456788899999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.28  E-value=4.6  Score=30.37  Aligned_cols=91  Identities=11%  Similarity=0.046  Sum_probs=55.8

Q ss_pred             ChhHHHHHhhhccC-------CCchhHHHHHHHHHhCCCc----chHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcC-CC
Q 045063           25 RYVYTHQVFDEISH-------GDLSSLNSQLFSYTRSRNF----PATWALFCYMHSTCLNLTAY-TFTPVLGACSAL-PA   91 (175)
Q Consensus        25 ~~~~a~~~f~~~~~-------~~~~~~~~li~~~~~~g~~----~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~-~~   91 (175)
                      ....|.++|+.|++       ++-..+..++..  ...+.    +.+...|+.+.+.|+..+.. -+.+-+-++... ..
T Consensus       118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~  195 (297)
T PF13170_consen  118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ  195 (297)
T ss_pred             HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence            34558888888875       345556666555  22222    46667777777777776544 333333333332 22


Q ss_pred             --chhHHHHHHHHHHhCCCcchHHHHHH
Q 045063           92 --PERGKQVHALMIKGGTDSEPVVKTAL  117 (175)
Q Consensus        92 --~~~a~~~~~~m~~~~~~~~~~~~~~l  117 (175)
                        ...+.++++.+++.|+++....|..+
T Consensus       196 ~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  196 EKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHcCCccccccccHH
Confidence              34778888888888888777776544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.89  E-value=12  Score=28.81  Aligned_cols=144  Identities=8%  Similarity=-0.023  Sum_probs=90.6

Q ss_pred             CCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHhhHHHHH--HHHhcCCCchhHH
Q 045063           23 PKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAYTFTPVL--GACSALPAPERGK   96 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll--~~~~~~~~~~~a~   96 (175)
                      +|+..+|...++++.+   .|...++..=.+|.-+|+.+.-...+++.... +-...-.+|-.=|  =++...|-+++|+
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE  195 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE  195 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence            3555556666676654   27777888888888888888888888887433 2222222332222  2334667788887


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-------DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ..-++-.+-+ ..|.-...+..+..--.|++.++.++...-...       -.+-|-..--.+...+..+.|+++|..
T Consensus       196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            7766554422 234446677777777888888888887765522       122344444456667888999888865

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=86.59  E-value=6.1  Score=24.93  Aligned_cols=77  Identities=17%  Similarity=0.212  Sum_probs=39.8

Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..++|..+.+.+...+- .....--+-+..+.+.|+|++|...=....-||...|-+|-.  .+.|..+++...+.++..
T Consensus        21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~   97 (116)
T PF09477_consen   21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS   97 (116)
T ss_dssp             -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence            45666666666665443 222222333455566777777744444444566666666543  466666666666665543

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.15  E-value=12  Score=29.91  Aligned_cols=18  Identities=11%  Similarity=-0.230  Sum_probs=11.1

Q ss_pred             hhhhhcCCCChhHHHHHh
Q 045063           16 ISIADALPKRYVYTHQVF   33 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f   33 (175)
                      ++..+-+.|.++.|.++-
T Consensus       301 i~~fL~~~G~~e~AL~~~  318 (443)
T PF04053_consen  301 IARFLEKKGYPELALQFV  318 (443)
T ss_dssp             HHHHHHHTT-HHHHHHHS
T ss_pred             HHHHHHHCCCHHHHHhhc
Confidence            666666667777766664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.09  E-value=1.8  Score=22.39  Aligned_cols=21  Identities=10%  Similarity=0.240  Sum_probs=10.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 045063          150 SSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .+|...|+.+.|.+++++...
T Consensus         7 ~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         7 RAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHcCChHHHHHHHHHHHH
Confidence            345555555555555555443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=85.77  E-value=3.3  Score=26.06  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=12.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          114 KTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       114 ~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      |..|+..|...|..++|.+++....
T Consensus        42 ~~eL~~lY~~kg~h~~AL~ll~~l~   66 (108)
T PF10366_consen   42 YQELVDLYQGKGLHRKALELLKKLA   66 (108)
T ss_pred             HHHHHHHHHccCccHHHHHHHHHHh
Confidence            4444444555555555554444443

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=85.75  E-value=1.7  Score=24.30  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             HHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          128 GESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       128 ~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +...++++.+.  +.|-.-.-.+|.||...|+.++|.++++++.+
T Consensus         7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen    7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33444444443  22444444566777777777777776666543

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=85.44  E-value=1.8  Score=26.12  Aligned_cols=37  Identities=5%  Similarity=-0.032  Sum_probs=20.1

Q ss_pred             CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcch
Q 045063           22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPA   59 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~   59 (175)
                      ..|+.+.|+++.+.++ +...+|...++++-+.|...-
T Consensus        48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L   84 (88)
T cd08819          48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL   84 (88)
T ss_pred             ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence            4455555555555555 555555555555555554433

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.38  E-value=4.1  Score=27.27  Aligned_cols=69  Identities=10%  Similarity=0.077  Sum_probs=44.2

Q ss_pred             hcCCCchhHHHHHHHHHHhCCCcchH---HHHHHHHHHHhcCChHHHHHHHHhccCCC-chhHHHHHHHHH--hcCChH
Q 045063           87 SALPAPERGKQVHALMIKGGTDSEPV---VKTALMDMYSKYGLLGESVEAFKEIEFKD-VVTWNALLSSFL--RHGLAK  159 (175)
Q Consensus        87 ~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~--~~g~~~  159 (175)
                      ...+++.++..+++.|..  +.|...   ++-..  .+...|++++|.++|.+..+.. ...|..-+.++|  ..|+.+
T Consensus        21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             HhcCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            447788888888888875  344433   44433  3568899999999999988654 334554444444  445433

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.35  E-value=6.7  Score=24.26  Aligned_cols=45  Identities=13%  Similarity=0.076  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +++.-+..+....+.|+.....+-+.++.|.+|+..|.++|+.++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444455555555555555555555555555555544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=85.17  E-value=4  Score=21.48  Aligned_cols=31  Identities=10%  Similarity=0.147  Sum_probs=15.8

Q ss_pred             hCCCcchHHHHHHHHHhcCCCCCHhhHHHHH
Q 045063           53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVL   83 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll   83 (175)
                      +.|-+.++..++++|.+.|+..+...+..++
T Consensus        14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L   44 (48)
T PF11848_consen   14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL   44 (48)
T ss_pred             HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence            3445555555555555555555554444443

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=84.98  E-value=16  Score=28.33  Aligned_cols=120  Identities=9%  Similarity=0.052  Sum_probs=74.9

Q ss_pred             HHHhCCCcchHHHHHHHHHhcCCC------------CCHhhH--HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHH
Q 045063           50 SYTRSRNFPATWALFCYMHSTCLN------------LTAYTF--TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKT  115 (175)
Q Consensus        50 ~~~~~g~~~~a~~l~~~m~~~~~~------------~~~~t~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  115 (175)
                      .+.|.|.++.|.+=|+..++....            +....|  -..+..+...|+...+.+....+++- .+-|...+.
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~  193 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ  193 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence            455778888888888777644221            111112  22345556677777777777777763 345677777


Q ss_pred             HHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          116 ALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       116 ~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .-..+|...|++..|..-++...+   -++...--+-.-+...|+.+.++...+|..+
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            778888888888887666665542   2444444445556677777777776666654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.79  E-value=8  Score=27.31  Aligned_cols=75  Identities=9%  Similarity=0.011  Sum_probs=57.4

Q ss_pred             HhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-------CCCchhHHHHHHHHHhcCCh
Q 045063           86 CSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-------FKDVVTWNALLSSFLRHGLA  158 (175)
Q Consensus        86 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~g~~  158 (175)
                      +++.|+ +.|...|-.+...+.--+....-.|...|. ..+.+++..++....       ..|+..+..|.+.|.+.|+.
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            455555 567777777777666667778888887777 667788887777654       44788999999999999999


Q ss_pred             HHHH
Q 045063          159 KEAF  162 (175)
Q Consensus       159 ~~a~  162 (175)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            9885

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=84.39  E-value=7.9  Score=25.62  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=42.8

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      ..-+...+++..+.|+-+....+...+.+. -.++....-.+..+|.+.|+..++.+++.+
T Consensus        86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~  145 (161)
T PF09205_consen   86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE  145 (161)
T ss_dssp             -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            345566678888888888888888888753 367888888899999999999999887765

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.26  E-value=2.7  Score=18.74  Aligned_cols=20  Identities=20%  Similarity=0.129  Sum_probs=10.1

Q ss_pred             HHHHHHHhcCChHHHHHHHH
Q 045063          116 ALMDMYSKYGLLGESVEAFK  135 (175)
Q Consensus       116 ~li~~~~~~g~~~~a~~~~~  135 (175)
                      .+...+...|+.++|.++++
T Consensus         6 ~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    6 ALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHcCCHHHHHHHHh
Confidence            34445555555555555543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=84.20  E-value=16  Score=31.09  Aligned_cols=31  Identities=19%  Similarity=0.438  Sum_probs=16.3

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063          110 EPVVKTALMDMYSKYGLLGESVEAFKEIEFK  140 (175)
Q Consensus       110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  140 (175)
                      +....-.+.+++.+.|.-++|.+.+-+-..|
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p  881 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLRRSLP  881 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence            3444455555555555555555555544433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.09  E-value=3.1  Score=19.33  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=18.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .|..+-..|.+.|++++|.+.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            355566677777788888777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.86  E-value=5.6  Score=32.91  Aligned_cols=125  Identities=12%  Similarity=-0.005  Sum_probs=65.1

Q ss_pred             CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHH
Q 045063           22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHAL  101 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~  101 (175)
                      -.|+++.|..++..+++   ..-+.+..-+.+.|..++|+++-.         |..   .-+....+.|+++.|.++..+
T Consensus       598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s~---------D~d---~rFelal~lgrl~iA~~la~e  662 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELST---------DPD---QRFELALKLGRLDIAFDLAVE  662 (794)
T ss_pred             hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcCC---------Chh---hhhhhhhhcCcHHHHHHHHHh
Confidence            35666666665555542   334555556666666666655422         111   012223345555555554433


Q ss_pred             HHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC------------------------CchhHHHHHHHHHhcCC
Q 045063          102 MIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK------------------------DVVTWNALLSSFLRHGL  157 (175)
Q Consensus       102 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------~~~~~~~li~~~~~~g~  157 (175)
                      .      -+..-|..|-++....|++..|.+.|..-..-                        -.-..|.-.-+|...|+
T Consensus       663 ~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~  736 (794)
T KOG0276|consen  663 A------NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGD  736 (794)
T ss_pred             h------cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCC
Confidence            2      23445566666666666666665555543310                        11124444556777788


Q ss_pred             hHHHHHHHHH
Q 045063          158 AKEAFGVFQA  167 (175)
Q Consensus       158 ~~~a~~~~~~  167 (175)
                      .+++.+++.+
T Consensus       737 ~~~C~~lLi~  746 (794)
T KOG0276|consen  737 YEECLELLIS  746 (794)
T ss_pred             HHHHHHHHHh
Confidence            8888877654

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=83.62  E-value=2.1  Score=32.01  Aligned_cols=30  Identities=13%  Similarity=0.261  Sum_probs=24.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063          145 WNALLSSFLRHGLAKEAFGVFQAMTRERVE  174 (175)
Q Consensus       145 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  174 (175)
                      ||.-|..-++.||+++|+.+++|-++.|++
T Consensus       260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~  289 (303)
T PRK10564        260 FNQAIKQAVKKGDVDKALKLLDEAERLGST  289 (303)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            668888888888888888888888887764

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.61  E-value=12  Score=25.97  Aligned_cols=120  Identities=12%  Similarity=-0.021  Sum_probs=86.2

Q ss_pred             hcCCCChhHHHHHhhhccCCCchhHHHHH-----HHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHH--HhcCCC
Q 045063           20 DALPKRYVYTHQVFDEISHGDLSSLNSQL-----FSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGA--CSALPA   91 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~--~~~~~~   91 (175)
                      .++.+..++|..-|..+.+.+.-.|-.|-     ....+.|+-.+|...|++.-...-.|-.. -..-|=.+  +..+|.
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            46788999999999999987777776654     34556799999999999997665555443 22223222  457888


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF  139 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  139 (175)
                      ++......+.+...+-+.-...-..|--+--+.|++.+|...|..+..
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            888888888776544322223345666667799999999999999764

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=83.36  E-value=4.8  Score=21.16  Aligned_cols=35  Identities=9%  Similarity=0.046  Sum_probs=28.5

Q ss_pred             HhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063           86 CSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM  120 (175)
Q Consensus        86 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  120 (175)
                      ..+.|-.+++..++++|.+.|+..+...+..++.-
T Consensus        12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~   46 (48)
T PF11848_consen   12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR   46 (48)
T ss_pred             HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence            45667778999999999999998888888877653

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]

Probab=83.28  E-value=5  Score=32.00  Aligned_cols=86  Identities=5%  Similarity=-0.049  Sum_probs=65.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC--
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP--   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~--   90 (175)
                      ||.-|...|++.+|..+++++.-|   ..+.+.+++.+..+.|+....++++++--..|    ..|-+-+-++|.+..  
T Consensus       515 LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV~ds  590 (645)
T KOG0403|consen  515 LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERVYDS  590 (645)
T ss_pred             HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhhhcc
Confidence            888999999999999999998766   56679999999999999888888888875554    456667777776643  


Q ss_pred             ------CchhHHHHHHHHHHh
Q 045063           91 ------APERGKQVHALMIKG  105 (175)
Q Consensus        91 ------~~~~a~~~~~~m~~~  105 (175)
                            +++.|.+.|+...+.
T Consensus       591 l~DlsLDvPna~ekf~~~Ve~  611 (645)
T KOG0403|consen  591 LPDLSLDVPNAYEKFERYVEE  611 (645)
T ss_pred             CcccccCCCcHHHHHHHHHHH
Confidence                  345555555555544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=83.17  E-value=1.6  Score=20.16  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=17.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhc
Q 045063          148 LLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       148 li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +-.++.+.|+.++|.+.|+++.++
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            345566778888888888877654

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.10  E-value=2.3  Score=22.02  Aligned_cols=24  Identities=8%  Similarity=0.048  Sum_probs=17.2

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhc
Q 045063           47 QLFSYTRSRNFPATWALFCYMHST   70 (175)
Q Consensus        47 li~~~~~~g~~~~a~~l~~~m~~~   70 (175)
                      +-.+|.+.|+.+.|.+++++....
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            456777777777777777777644

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.90  E-value=4.9  Score=23.77  Aligned_cols=46  Identities=17%  Similarity=0.096  Sum_probs=29.1

Q ss_pred             cCCCchhHHHHHHHHHHhCCCcc-h-HHHHHHHHHHHhcCChHHHHHH
Q 045063           88 ALPAPERGKQVHALMIKGGTDSE-P-VVKTALMDMYSKYGLLGESVEA  133 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~g~~~~a~~~  133 (175)
                      .....++|...|....+.-..+. . .+...++.+|+..|+++++..+
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777777665433332 2 2667777888888887776543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=82.58  E-value=17  Score=26.86  Aligned_cols=149  Identities=9%  Similarity=0.000  Sum_probs=91.9

Q ss_pred             cCCCChhHHHHHhhhccC------CC------chhHHHHHHHHHhCCCcchHHHHHHHHHhc--------CCCCCH----
Q 045063           21 ALPKRYVYTHQVFDEISH------GD------LSSLNSQLFSYTRSRNFPATWALFCYMHST--------CLNLTA----   76 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~------~~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------~~~~~~----   76 (175)
                      .+.|+.+.|..++.+...      |+      ...||+=...+.+..++++|...+++..+-        ...|+.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            467999999999998763      22      234677666665554887777766664322        233333    


Q ss_pred             -hhHHHHHHHHhcCCCch---hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHH
Q 045063           77 -YTFTPVLGACSALPAPE---RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALL  149 (175)
Q Consensus        77 -~t~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li  149 (175)
                       .+...+..++...+..+   +|..+.+.+... ..-...++---++...+.++.+.+.+.+..|...   ....+...+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l  162 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence             36677778887777654   455566666543 2223455555666666789999999999988743   234455555


Q ss_pred             HHH---HhcCChHHHHHHHHHHHhc
Q 045063          150 SSF---LRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       150 ~~~---~~~g~~~~a~~~~~~m~~~  171 (175)
                      ..+   .... .+.|...+.++...
T Consensus       163 ~~i~~l~~~~-~~~a~~~ld~~l~~  186 (278)
T PF08631_consen  163 HHIKQLAEKS-PELAAFCLDYLLLN  186 (278)
T ss_pred             HHHHHHHhhC-cHHHHHHHHHHHHH
Confidence            544   3333 34566666665543

It is also involved in sporulation [].

>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]

Probab=82.47  E-value=6.4  Score=33.07  Aligned_cols=89  Identities=13%  Similarity=0.073  Sum_probs=61.5

Q ss_pred             hhhhhhcCCCChhHHHHHhhhccCC------CchhHHHHHHHHHhCCCcc--hHHHHHHHHH-hcCCCCCHhhHHHHHHH
Q 045063           15 CISIADALPKRYVYTHQVFDEISHG------DLSSLNSQLFSYTRSRNFP--ATWALFCYMH-STCLNLTAYTFTPVLGA   85 (175)
Q Consensus        15 ~ll~~~~~~~~~~~a~~~f~~~~~~------~~~~~~~li~~~~~~g~~~--~a~~l~~~m~-~~~~~~~~~t~~~ll~~   85 (175)
                      +|+.+|..+|++-.+.++++.+-..      =..-||..|..+.+.|+++  +..+-.++.. +..+.-|..||..+..+
T Consensus        33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~  112 (1117)
T COG5108          33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA  112 (1117)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence            3999999999999999999887532      2456999999999999876  3344344432 33566788899888877


Q ss_pred             HhcCCCchhHHHHHHHHH
Q 045063           86 CSALPAPERGKQVHALMI  103 (175)
Q Consensus        86 ~~~~~~~~~a~~~~~~m~  103 (175)
                      ......-..+.-++.+++
T Consensus       113 sln~t~~~l~~pvl~~~i  130 (1117)
T COG5108         113 SLNPTQRQLGLPVLHELI  130 (1117)
T ss_pred             hcChHhHHhccHHHHHHH
Confidence            765444344444444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=82.28  E-value=1.7  Score=20.90  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=18.0

Q ss_pred             cchHHHHHHHHHHHhcCChHHHH
Q 045063          109 SEPVVKTALMDMYSKYGLLGESV  131 (175)
Q Consensus       109 ~~~~~~~~li~~~~~~g~~~~a~  131 (175)
                      -|...|+.+-..|...|++++|.
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhhc
Confidence            35668888888888888888875

>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9

Probab=82.17  E-value=2.9  Score=24.99  Aligned_cols=33  Identities=9%  Similarity=0.073  Sum_probs=16.4

Q ss_pred             CCChhHHHHHhhhccCCCchhHHHHHHHHHhCC
Q 045063           23 PKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSR   55 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g   55 (175)
                      ..+.+.+.++.+.++.++..+|....+++-..|
T Consensus        43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~   75 (84)
T cd08326          43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETG   75 (84)
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            344444555555555555555555555554443

Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=82.09  E-value=34  Score=29.93  Aligned_cols=114  Identities=3%  Similarity=-0.097  Sum_probs=71.3

Q ss_pred             CcchhhhhhcCCCChhHHHHHhhhccC------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH
Q 045063           12 AKTCISIADALPKRYVYTHQVFDEISH------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF   79 (175)
Q Consensus        12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~   79 (175)
                      .|..|.++|.+.+++|-|.-++.+|..            .+..+-..+-.--.+.|.+++|..+|.+-++-         
T Consensus       759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------  829 (1416)
T KOG3617|consen  759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------  829 (1416)
T ss_pred             HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------
Confidence            456689999999999999888888853            12122222333334679999999999987554         


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           80 TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        80 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      -.|=+-|-..|.+++|.++-+.=.+  +. -..||-.....+-..+|.+.|.+.|+.-
T Consensus       830 DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  830 DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence            2233344567888888887553222  21 1235555555555566666666666554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=81.40  E-value=10  Score=23.46  Aligned_cols=60  Identities=7%  Similarity=0.017  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           59 ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        59 ~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      ++.+-+..+-...+.|+.....+.+++|.+.+++..|-.+++-.+.. +..+...|..+++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq   84 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence            45555555556678899999999999999999999999999988732 3335557776664

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=81.35  E-value=13  Score=24.66  Aligned_cols=35  Identities=6%  Similarity=-0.075  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY   77 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~   77 (175)
                      --..++..+.+.++.-.|.++|+++.+.+...+..
T Consensus        22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla   56 (145)
T COG0735          22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLA   56 (145)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence            34444444444444444444444444444444433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=81.30  E-value=11  Score=30.77  Aligned_cols=103  Identities=9%  Similarity=-0.005  Sum_probs=62.2

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH-----
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV-----  112 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----  112 (175)
                      +.....-++.-|.+.+.+++|..++..|-=. ..+.  ..+.+.+.+.+.+..--++.+..++...-.=..|...     
T Consensus       407 G~l~~~eL~~~yl~~~qi~eAi~lL~smnW~-~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~  485 (545)
T PF11768_consen  407 GDLGLVELISQYLRCDQIEEAINLLLSMNWN-TMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDAT  485 (545)
T ss_pred             CcccHHHHHHHHHhcCCHHHHHHHHHhCCcc-ccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHH
Confidence            3344567888999999999999999998322 2222  1355566777777765566666666666443333322     


Q ss_pred             --HHHHHHHHH--------HhcCChHHHHHHHHhccCCCch
Q 045063          113 --VKTALMDMY--------SKYGLLGESVEAFKEIEFKDVV  143 (175)
Q Consensus       113 --~~~~li~~~--------~~~g~~~~a~~~~~~m~~~~~~  143 (175)
                        -|..-|..|        .|.+++++|+.+--.+..+|..
T Consensus       486 ~~ey~d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLF  526 (545)
T PF11768_consen  486 VLEYRDPVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLF  526 (545)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccchHHH
Confidence              333333333        3466666666666655555543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.97  E-value=4.3  Score=18.88  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +|..+-..|...|+.++|...|++-.+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455555666677777777777766543

...

>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2

Probab=80.96  E-value=3  Score=25.29  Aligned_cols=32  Identities=3%  Similarity=0.087  Sum_probs=18.0

Q ss_pred             CCCChhHHHHHhhhccCCCchhHHHHHHHHHh
Q 045063           22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTR   53 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~   53 (175)
                      ...+.+.+.++++.++.++..+|..+..++-.
T Consensus        46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~   77 (90)
T cd08332          46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRE   77 (90)
T ss_pred             CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence            33445555566666665565666665555544

Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and

>PRK11639 zinc uptake transcriptional repressor; Provisional

Probab=80.74  E-value=14  Score=25.18  Aligned_cols=54  Identities=7%  Similarity=-0.150  Sum_probs=31.3

Q ss_pred             CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +.+..-..++..+...++.-.|.+++..+.+.+..++..|.--.|+.+.+.|-+
T Consensus        23 R~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv   76 (169)
T PRK11639         23 RLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV   76 (169)
T ss_pred             CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence            344445556666655555666666666666666555655544455555555543

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.67  E-value=11  Score=26.09  Aligned_cols=52  Identities=13%  Similarity=0.027  Sum_probs=35.9

Q ss_pred             hcCCCchhHHHHHHHHHH-hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           87 SALPAPERGKQVHALMIK-GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        87 ~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ....+.+......+...+ ....|+..+|..++.++...|+.++|.+...++.
T Consensus       119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~  171 (193)
T PF11846_consen  119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR  171 (193)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            355555555555555443 2356888888888888888888888888777765

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.43  E-value=30  Score=28.16  Aligned_cols=122  Identities=11%  Similarity=0.060  Sum_probs=79.8

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhcC-CCCC--Hh-h----HHHHHH-HHhcCCCchhHHHHHHHHHHhCCCcchH--HHHH
Q 045063           48 LFSYTRSRNFPATWALFCYMHSTC-LNLT--AY-T----FTPVLG-ACSALPAPERGKQVHALMIKGGTDSEPV--VKTA  116 (175)
Q Consensus        48 i~~~~~~g~~~~a~~l~~~m~~~~-~~~~--~~-t----~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~  116 (175)
                      +-+-.-.|+..+|++-..+|++.- -.|.  .. .    ...++- .|...+..+.|+.-|....+.--+.|..  .-..
T Consensus       330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln  409 (629)
T KOG2300|consen  330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN  409 (629)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            333344699999999999998862 2233  11 2    222222 2345677888887777666543334443  3356


Q ss_pred             HHHHHHhcCChHHHHHHHHhccCCCchhHHH--------HHHHH--HhcCChHHHHHHHHHHH
Q 045063          117 LMDMYSKYGLLGESVEAFKEIEFKDVVTWNA--------LLSSF--LRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       117 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------li~~~--~~~g~~~~a~~~~~~m~  169 (175)
                      +.-.|.+.|+-+.-.++.+.+..+|..++..        ++.|+  ...+++.+|...++|-.
T Consensus       410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L  472 (629)
T KOG2300|consen  410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL  472 (629)
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            7788999999999999999988776555432        23332  36788999988887743

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=80.25  E-value=28  Score=27.68  Aligned_cols=149  Identities=10%  Similarity=-0.036  Sum_probs=92.6

Q ss_pred             hcCCCChhHHHHHhhhccC-CCchhHHHHHHHHHh--CCCcchHHHHHHHHHhcCCCCCHhhHHH---H----------H
Q 045063           20 DALPKRYVYTHQVFDEISH-GDLSSLNSQLFSYTR--SRNFPATWALFCYMHSTCLNLTAYTFTP---V----------L   83 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~-~~~~~~~~li~~~~~--~g~~~~a~~l~~~m~~~~~~~~~~t~~~---l----------l   83 (175)
                      +.-.|+.+.|.+.--...+ ..+..+..++...|-  .++.+.|..-|.+-++  +.|+...-..   .          -
T Consensus       179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~g  256 (486)
T KOG0550|consen  179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERG  256 (486)
T ss_pred             hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhh
Confidence            3345666666665444332 344455666655443  4666777777776543  3343322111   1          1


Q ss_pred             HHHhcCCCchhHHHHHHHHHH---hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC-chhHHHHHHH--HHhcCC
Q 045063           84 GACSALPAPERGKQVHALMIK---GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD-VVTWNALLSS--FLRHGL  157 (175)
Q Consensus        84 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~--~~~~g~  157 (175)
                      +-..+.|.+..|.+.|.+-+.   .+..|+...|-....+..+.|+.++|...=++...-| ..++..+..+  +.-.++
T Consensus       257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence            334677889999999988874   2456677788888888889999999887776655544 3455555544  335578


Q ss_pred             hHHHHHHHHHHHh
Q 045063          158 AKEAFGVFQAMTR  170 (175)
Q Consensus       158 ~~~a~~~~~~m~~  170 (175)
                      |++|++-|++..+
T Consensus       337 ~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888777544

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=80.03  E-value=3.6  Score=30.86  Aligned_cols=44  Identities=14%  Similarity=0.096  Sum_probs=33.7

Q ss_pred             Cchh-HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHH
Q 045063           40 DLSS-LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVL   83 (175)
Q Consensus        40 ~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll   83 (175)
                      |+.+ ||.-|..-.+.||++.|+++.+|.++.|+.--..||---+
T Consensus       255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V  299 (303)
T PRK10564        255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV  299 (303)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence            4444 6899999999999999999999999888865555554443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=80.01  E-value=12  Score=23.40  Aligned_cols=75  Identities=7%  Similarity=0.045  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhCCCcc--hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFP--ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        44 ~~~li~~~~~~g~~~--~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      |+.=-..|....+++  +..+-+...-...+.|+.....+.+.+|.+.+++..|..+++-.+.. +.+....|..+++
T Consensus        11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            333334444433333  44555555555678899999999999999999999999999988743 3334447776664

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 15/146 (10%), Positives = 37/146 (25%), Gaps = 7/146 (4%)

Query: 37  SHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGK 96
             G+  +L  +L    R  +      L         +        +L       + +  +
Sbjct: 53  QSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQ 112

Query: 97  QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAF-------KEIEFKDVVTWNALL 149
                  +     +     A          L  +           ++ +   +  +NA++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172

Query: 150 SSFLRHGLAKEAFGVFQAMTRERVEF 175
             + R G  KE   V   +    +  
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTP 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.9
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.9
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.72
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.42
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.37
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.34
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.33
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.3
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.27
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.26
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.25
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.24
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.24
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.23
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.2
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.2
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.2
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.19
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.18
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.07
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.02
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.01
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.98
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.95
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.92
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.85
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.81
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.81
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.79
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.79
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.79
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.75
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.74
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.74
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.73
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.72
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.69
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.68
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.68
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.64
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.54
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.54
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.51
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.5
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.48
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.46
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.43
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.42
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.41
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.4
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.39
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.38
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.38
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.38
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.37
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.34
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.33
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.33
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.33
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.32
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.31
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.31
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.31
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.28
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.28
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.28
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.27
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.25
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.24
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.23
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.22
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.22
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.22
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.21
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.2
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.2
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.19
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.16
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.13
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.08
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.07
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.0
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.99
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.99
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.98
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.97
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.95
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.95
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.92
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.91
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.88
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.88
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.86
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.85
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.84
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.82
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.76
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.74
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.7
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.69
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.68
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.64
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.63
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.6
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.57
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.55
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.5
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.5
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.48
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.47
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.44
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.41
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.38
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.27
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.03
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.95
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.78
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.75
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.51
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.39
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.27
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.1
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	95.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.74
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.59
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.46
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.37
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.31
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.99
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.86
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.47
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.46
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	94.2
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.94
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	93.78
2p58_C	116	Putative type III secretion protein YSCG; type III	93.72
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.61
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.87
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.4
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	91.98
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	91.75
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	91.52
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.48
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.22
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.89
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	90.82
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.45
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	89.16
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	88.99
2zu6_B	307	Programmed cell death protein 4; protein-protein c	88.82
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	88.77
3ygs_P	97	Procaspase 9; apoptosis, caspase activation, caspa	88.14
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	88.07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	87.84
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.33
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	86.24
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	84.43
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.98
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	83.92
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	82.94
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	82.37
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.13
2p1h_A	94	APAF-1, apoptotic protease-activating factor 1; fo	81.57
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	81.44
3hra_A	201	Ankyrin repeat family protein; structural protein;	81.44
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.73
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	80.62
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	80.48
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	80.17
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	80.13

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.4e-36  Score=236.60  Aligned_cols=161  Identities=13%  Similarity=0.043  Sum_probs=154.5

Q ss_pred             hhhhhhcCCCChhHHHHHhhhcc----CCCchhHHHHHHHHHhCCC---------cchHHHHHHHHHhcCCCCCHhhHHH
Q 045063           15 CISIADALPKRYVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRN---------FPATWALFCYMHSTCLNLTAYTFTP   81 (175)
Q Consensus        15 ~ll~~~~~~~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~---------~~~a~~l~~~m~~~~~~~~~~t~~~   81 (175)
                      .+|++|++.|++++|.++|++|.    .||..+||+||.+|++.+.         ++.|.++|++|.+.|+.||..||++
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~  110 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN  110 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            38999999999999999999997    4899999999999998765         5779999999999999999999999


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHHhcCC
Q 045063           82 VLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFLRHGL  157 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~g~  157 (175)
                      ++++|++.|++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.    .||..||++||.+|++.|+
T Consensus       111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~  190 (501)
T 4g26_A          111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN  190 (501)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence            999999999999999999999999999999999999999999999999999999997    6799999999999999999


Q ss_pred             hHHHHHHHHHHHhcccCC
Q 045063          158 AKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       158 ~~~a~~~~~~m~~~g~~p  175 (175)
                      +++|.++|++|.+.|+.|
T Consensus       191 ~d~A~~ll~~Mr~~g~~p  208 (501)
T 4g26_A          191 ADKVYKTLQRLRDLVRQV  208 (501)
T ss_dssp             HHHHHHHHHHHHHHTSSB
T ss_pred             HHHHHHHHHHHHHhCCCc
Confidence            999999999999999887

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=8.4e-31  Score=205.27  Aligned_cols=149  Identities=16%  Similarity=0.154  Sum_probs=129.4

Q ss_pred             hHHHHHhhhccCC-----CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC---------c
Q 045063           27 VYTHQVFDEISHG-----DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA---------P   92 (175)
Q Consensus        27 ~~a~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~---------~   92 (175)
                      ..+..+++++.+.     +...++.+|.+|++.|++++|+++|++|++.|++||..|||+||++|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            4455666666542     3456899999999999999999999999999999999999999999998765         5


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +.|.++|++|.+.|+.||..+||++|++|++.|++++|.++|++|.    .||..|||+||.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999997    579999999999999999999999999999


Q ss_pred             HhcccCC
Q 045063          169 TRERVEF  175 (175)
Q Consensus       169 ~~~g~~p  175 (175)
                      .+.|+.|
T Consensus       167 ~~~G~~P  173 (501)
T 4g26_A          167 VESEVVP  173 (501)
T ss_dssp             HHTTCCC
T ss_pred             HhcCCCC
Confidence            9999988

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.90  E-value=4.5e-25  Score=180.61  Aligned_cols=144  Identities=11%  Similarity=0.112  Sum_probs=122.8

Q ss_pred             cchhhhhhcCCCChhHHHHHhhhcc-------CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 045063           13 KTCISIADALPKRYVYTHQVFDEIS-------HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA   85 (175)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~   85 (175)
                      +|+||++||+.|++++|.++|++|.       .||+++||+||.+||+.|++++|.++|++|.+.|+.||.+|||++|++
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g  209 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            5669999999999999999998764       479999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCc-hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-----CchhHHHHHHHHHhcC
Q 045063           86 CSALPAP-ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-----DVVTWNALLSSFLRHG  156 (175)
Q Consensus        86 ~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~g  156 (175)
                      +++.|.. ++|.+++++|.+.|+.||..+|+++++++.+.+-++.+.++...+..+     -+.+.+.|.+-|.+.+
T Consensus       210 lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence            9999875 788999999999999999999999999988887777777766555422     2445556666666555

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.90  E-value=4.8e-24  Score=174.62  Aligned_cols=116  Identities=14%  Similarity=0.057  Sum_probs=107.8

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHH---hcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMH---STCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL  117 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  117 (175)
                      ..+||+||++||+.|++++|.++|.+|.   ..|+.||.+|||+||+++|+.|++++|.++|++|.+.|+.||..|||++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            4479999999999999999999998876   4589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCh-HHHHHHHHhcc----CCCchhHHHHHHHHHhcC
Q 045063          118 MDMYSKYGLL-GESVEAFKEIE----FKDVVTWNALLSSFLRHG  156 (175)
Q Consensus       118 i~~~~~~g~~-~~a~~~~~~m~----~~~~~~~~~li~~~~~~g  156 (175)
                      |+++++.|+. ++|.++|++|.    .||.++|+.+|+++.+.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~  250 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT  250 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence            9999999985 78999999998    689999999998776654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.72  E-value=7.7e-17  Score=127.59  Aligned_cols=152  Identities=10%  Similarity=0.018  Sum_probs=79.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      ++..|.+.|++++|.++|+++.+  ++..+|+.++..|.+.|++++|.++|+++.+.+. .+..+++.+..++.+.|+.+
T Consensus       278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~  356 (597)
T 2xpi_A          278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKN  356 (597)
T ss_dssp             TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHH
Confidence            46666666777777777766655  5666667777777777777777777776655432 13334444444444444444


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--C-CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--F-KDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +|..+++++.+.. +.+..+|+.+..+|.+.|++++|.++|+.+.  . .+..+|+.++.+|.+.|++++|.++|+++.
T Consensus       357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  434 (597)
T 2xpi_A          357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA  434 (597)
T ss_dssp             HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444444321 2234444444444444444444444444432  1 133344444444444444444444444443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.71  E-value=2.9e-16  Score=124.30  Aligned_cols=153  Identities=8%  Similarity=-0.011  Sum_probs=81.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +..+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+.|++++|.++|++|.+.+ +.+..+|+.+..+|.+.|++
T Consensus       379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~  457 (597)
T 2xpi_A          379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI  457 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence            55566666666666666665432   244455556666666666666666665554432 22444555555555555555


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--------CCC--chhHHHHHHHHHhcCChHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--------FKD--VVTWNALLSSFLRHGLAKEAF  162 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~~--~~~~~~li~~~~~~g~~~~a~  162 (175)
                      ++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+.+.        .|+  ..+|+.+..+|.+.|++++|.
T Consensus       458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  536 (597)
T 2xpi_A          458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI  536 (597)
T ss_dssp             HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence            55555555555432 2244455555555555555555555555542        122  345555555555555555555


Q ss_pred             HHHHHHHh
Q 045063          163 GVFQAMTR  170 (175)
Q Consensus       163 ~~~~~m~~  170 (175)
                      +.|+++.+
T Consensus       537 ~~~~~~~~  544 (597)
T 2xpi_A          537 DALNQGLL  544 (597)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.43  E-value=1.6e-11  Score=89.78  Aligned_cols=163  Identities=7%  Similarity=-0.077  Sum_probs=127.6

Q ss_pred             hHHhhcCCCcch-----hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh
Q 045063            4 FIRMTNFPAKTC-----ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT   78 (175)
Q Consensus         4 ~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t   78 (175)
                      +++..+..|.+.     +-.++...|++++|.+.|++  ..+...+..+...|.+.|++++|.+.|+++.+..  |+...
T Consensus        90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~  165 (291)
T 3mkr_A           90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATL  165 (291)
T ss_dssp             HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred             HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHH
Confidence            344445556554     44778899999999999998  4577788999999999999999999999997764  44321


Q ss_pred             H---HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHH
Q 045063           79 F---TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSF  152 (175)
Q Consensus        79 ~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~  152 (175)
                      .   ...+..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|.+.|++..  .| |..+|..++..+
T Consensus       166 ~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          166 TQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS  244 (291)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            1   22334455668999999999999986 45678899999999999999999999999876  34 677899999999


Q ss_pred             HhcCChHH-HHHHHHHHHhc
Q 045063          153 LRHGLAKE-AFGVFQAMTRE  171 (175)
Q Consensus       153 ~~~g~~~~-a~~~~~~m~~~  171 (175)
                      ...|+.++ +.++++++.+.
T Consensus       245 ~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          245 QHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHTTCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHh
Confidence            99999875 56788877653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=1.3e-11  Score=92.85  Aligned_cols=153  Identities=8%  Similarity=0.008  Sum_probs=109.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+...|++++|...|++...  | +..+|..+..+|.+.|++++|.+.|+++.+.. +-+..+|..+..++.+.|++
T Consensus       209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  287 (388)
T 1w3b_A          209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSV  287 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Confidence            33444455555555555554421  2 45667777788888888888888888876642 12345777788888888888


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...++++.+.. +.+..+|..+...|.+.|++++|.+.++.+.+  | +..+|..+...|.+.|++++|...|+++.
T Consensus       288 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  366 (388)
T 1w3b_A          288 AEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI  366 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888888887653 45667888888888888888888888888763  3 45678888888888888888888888876


Q ss_pred             h
Q 045063          170 R  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       367 ~  367 (388)
T 1w3b_A          367 R  367 (388)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=5.6e-11  Score=82.26  Aligned_cols=153  Identities=10%  Similarity=-0.067  Sum_probs=74.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC-CC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL-PA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~-~~   91 (175)
                      +...+...|+++.|.+.|++..+   .+...|..+..+|...|++++|.+.|.+..+.. +.+..++..+...+... |+
T Consensus        14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~   92 (225)
T 2vq2_A           14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNR   92 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCc
Confidence            34444555555555555554432   234445555555555555555555555554431 12333455555555555 55


Q ss_pred             chhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      +++|...++...+.+..| +...+..+...|.+.|++++|...++...  .| +...|..+...+.+.|++++|...+++
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A           93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555555554421112 23445555555555555555555555443  12 344455555555555555555555555


Q ss_pred             HH
Q 045063          168 MT  169 (175)
Q Consensus       168 m~  169 (175)
                      ..
T Consensus       173 ~~  174 (225)
T 2vq2_A          173 YQ  174 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.37  E-value=5.7e-11  Score=84.06  Aligned_cols=155  Identities=8%  Similarity=-0.004  Sum_probs=106.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~   91 (175)
                      +..++...|++++|.+.|++..+   .+...|..+...|.+.|++++|.+.|++..+.+..|+ ...+..+..++.+.|+
T Consensus        77 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  156 (252)
T 2ho1_A           77 LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK  156 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC
Confidence            55666777777777777776542   2556677777777777777777777777766334443 3466667777777777


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +++|...+++..+.. +.+...+..+...|...|++++|...++...+   .+...|..+...+.+.|+.++|.+.++++
T Consensus       157 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          157 PAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            777777777776643 23456777777777777777777777777653   24556677777777778888887777777


Q ss_pred             Hhc
Q 045063          169 TRE  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       236 ~~~  238 (252)
T 2ho1_A          236 KRL  238 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.37  E-value=6.6e-11  Score=79.32  Aligned_cols=153  Identities=13%  Similarity=0.069  Sum_probs=132.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +...+...|+++.|...|+++.+   .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus        14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~   92 (186)
T 3as5_A           14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY   92 (186)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence            56677888999999999999864   367778999999999999999999999987762 34566888888999999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...+++..+.. +.+...+..+...|.+.|++++|.+.++...+   .+...|..+...+...|+.++|...+++..
T Consensus        93 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A           93 DLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999998763 45677899999999999999999999998762   356789999999999999999999999876


Q ss_pred             h
Q 045063          170 R  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       172 ~  172 (186)
T 3as5_A          172 E  172 (186)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.36  E-value=4.3e-11  Score=90.04  Aligned_cols=154  Identities=9%  Similarity=-0.036  Sum_probs=86.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcC---------------------
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTC---------------------   71 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~---------------------   71 (175)
                      +-..+...|++++|.+.|+++.+  | +..+|+.+..++.+.|++++|.+.|+++.+..                     
T Consensus       141 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~  220 (388)
T 1w3b_A          141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD  220 (388)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence            44555566666666666666532  2 34455666666666666666666665554321                     


Q ss_pred             -----------CCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-
Q 045063           72 -----------LNL-TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-  138 (175)
Q Consensus        72 -----------~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-  138 (175)
                                 +.| +..++..+..++.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++|.+.|+.+. 
T Consensus       221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  299 (388)
T 1w3b_A          221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR  299 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                       112 23455555555666666666666666655532 1234456666666666666666666666554 


Q ss_pred             --CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          139 --FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       139 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                        ..+..+|+.+...+.+.|++++|...++++.+
T Consensus       300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              22455666666666666666666666666544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.35  E-value=3.4e-11  Score=91.97  Aligned_cols=152  Identities=4%  Similarity=-0.051  Sum_probs=86.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH----hhHHHHH-----
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA----YTFTPVL-----   83 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~----~t~~~ll-----   83 (175)
                      +..++.+.|+++.|...|+++.+   .+...|..+..+|.+.|++++|.+.|+++.+.  .|+.    ..+..+.     
T Consensus        66 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~  143 (450)
T 2y4t_A           66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM  143 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH
Confidence            44455555555555555555432   23445555555555555555665555555443  1221    2333332     


Q ss_pred             -------HHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHH
Q 045063           84 -------GACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFL  153 (175)
Q Consensus        84 -------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~  153 (175)
                             ..+.+.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|+.+.   ..+..+|..+...|.
T Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  222 (450)
T 2y4t_A          144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY  222 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                   22455556666666666555432 2345566666667777777777777776654   235666777777777


Q ss_pred             hcCChHHHHHHHHHHHh
Q 045063          154 RHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       154 ~~g~~~~a~~~~~~m~~  170 (175)
                      +.|++++|...|+++.+
T Consensus       223 ~~g~~~~A~~~~~~~~~  239 (450)
T 2y4t_A          223 QLGDHELSLSEVRECLK  239 (450)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            77777777777777654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.34  E-value=3e-11  Score=92.30  Aligned_cols=151  Identities=9%  Similarity=-0.035  Sum_probs=124.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHH---------
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPV---------   82 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~l---------   82 (175)
                      +..+|.+.|+++.|...|+++.+   .+..+|..+..+|.+.|++++|...|.++.+.  .|+.. .+..+         
T Consensus       183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~  260 (450)
T 2y4t_A          183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL  260 (450)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence            77888899999999999998753   46788999999999999999999999998754  34333 34333         


Q ss_pred             ---HHHHhcCCCchhHHHHHHHHHHhCCCcc-----hHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHH
Q 045063           83 ---LGACSALPAPERGKQVHALMIKGGTDSE-----PVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSS  151 (175)
Q Consensus        83 ---l~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~  151 (175)
                         ...+.+.|++++|...++.+.+..  |+     ...|..+...|.+.|++++|.+.++.+.  .| +...|..+..+
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  338 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence               678888999999999999998743  43     4478888999999999999999999875  34 67789999999


Q ss_pred             HHhcCChHHHHHHHHHHHh
Q 045063          152 FLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       152 ~~~~g~~~~a~~~~~~m~~  170 (175)
                      |...|++++|...|++..+
T Consensus       339 ~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          339 YLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHH
Confidence            9999999999999998865

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.34  E-value=5.7e-11  Score=84.04  Aligned_cols=155  Identities=6%  Similarity=-0.107  Sum_probs=132.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +...+...|+++.|...|+++.+   .+...|..+..+|.+.|++++|.+.|.+..+.. +.+...+..+...+.+.|++
T Consensus        43 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~  121 (252)
T 2ho1_A           43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRY  121 (252)
T ss_dssp             HHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHH
Confidence            66778899999999999998753   367788999999999999999999999987763 23567888899999999999


Q ss_pred             hhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ++|...+++..+.+..| +...+..+...|.+.|++++|.+.++...+  | +...|..+...|.+.|+.++|...+++.
T Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999998733344 566889999999999999999999998762  3 5778999999999999999999999998


Q ss_pred             Hhc
Q 045063          169 TRE  171 (175)
Q Consensus       169 ~~~  171 (175)
                      .+.
T Consensus       202 ~~~  204 (252)
T 2ho1_A          202 AQG  204 (252)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.33  E-value=9.3e-11  Score=82.25  Aligned_cols=154  Identities=7%  Similarity=0.016  Sum_probs=118.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +...+.+.|+++.|...|++..+   .+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+.+.|++
T Consensus        63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~  141 (243)
T 2q7f_A           63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQP  141 (243)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence            66677788888888888887643   356677888888888888888888888876653 23556777788888888888


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...+++..+.. +.+...+..+...|.+.|++++|...++...+   .+..+|..+...|.+.|+.++|...+++..
T Consensus       142 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  220 (243)
T 2q7f_A          142 KLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI  220 (243)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            88888888887653 34566788888888888888888888887652   256678888888888888888888888876


Q ss_pred             hc
Q 045063          170 RE  171 (175)
Q Consensus       170 ~~  171 (175)
                      +.
T Consensus       221 ~~  222 (243)
T 2q7f_A          221 DI  222 (243)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.30  E-value=2.9e-10  Score=78.61  Aligned_cols=155  Identities=10%  Similarity=-0.102  Sum_probs=132.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhC-CCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRS-RNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~   90 (175)
                      +..++...|+++.|.+.|++..+   .+...+..+...+... |++++|...|++..+.+..|+ ...+..+..++.+.|
T Consensus        48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  127 (225)
T 2vq2_A           48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG  127 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence            77788999999999999998753   3677899999999999 999999999999988444454 458888899999999


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---C-CCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---F-KDVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~-~~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      ++++|...+++..+.. +.+...+..+...|.+.|++++|.+.++...   . .+...|..+...+...|+.+.|..+++
T Consensus       128 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  206 (225)
T 2vq2_A          128 QFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA  206 (225)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            9999999999998763 3457789999999999999999999999876   2 466678888888899999999999999


Q ss_pred             HHHhc
Q 045063          167 AMTRE  171 (175)
Q Consensus       167 ~m~~~  171 (175)
                      .+.+.
T Consensus       207 ~~~~~  211 (225)
T 2vq2_A          207 QLQAN  211 (225)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.30  E-value=2.5e-10  Score=77.23  Aligned_cols=154  Identities=10%  Similarity=0.028  Sum_probs=131.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +=..|.+.|+++.|.+.|++..+  | +...|..+..+|.+.|++++|...+....... +-+...+..+-..+...+++
T Consensus        11 lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   89 (184)
T 3vtx_A           11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEK   89 (184)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCH
Confidence            55677889999999999999753  3 67789999999999999999999999987653 23455777777888899999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +.+...+.+..+.. +.+...+..+-..|.+.|++++|.+.|+...  .| +...|..+-.+|.+.|++++|.+.|++..
T Consensus        90 ~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  168 (184)
T 3vtx_A           90 QAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL  168 (184)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999988753 3467789999999999999999999999876  34 66789999999999999999999999876


Q ss_pred             hc
Q 045063          170 RE  171 (175)
Q Consensus       170 ~~  171 (175)
                      +.
T Consensus       169 ~~  170 (184)
T 3vtx_A          169 EK  170 (184)
T ss_dssp             HT
T ss_pred             hC
Confidence            53

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.29  E-value=3.1e-12  Score=97.99  Aligned_cols=77  Identities=12%  Similarity=0.069  Sum_probs=30.4

Q ss_pred             CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHh
Q 045063           75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLR  154 (175)
Q Consensus        75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~  154 (175)
                      +..+|..+.+.|...|.+++|...|..+         ..|..+++++.+.|++++|.+.+...  .++.+|..++.+|+.
T Consensus       121 n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          121 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD  189 (449)
T ss_dssp             ----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHH
Confidence            3334444444444444444444444432         24455555555555555555555544  245555555555555


Q ss_pred             cCChHHHH
Q 045063          155 HGLAKEAF  162 (175)
Q Consensus       155 ~g~~~~a~  162 (175)
                      .|+++.|.
T Consensus       190 ~~ef~lA~  197 (449)
T 1b89_A          190 GKEFRLAQ  197 (449)
T ss_dssp             TTCHHHHH
T ss_pred             cCcHHHHH
Confidence            55554443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.27  E-value=1e-10  Score=85.55  Aligned_cols=148  Identities=14%  Similarity=0.031  Sum_probs=102.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhcc----CC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEIS----HG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~   90 (175)
                      +...+.+.++.+.|.+.++++.    .| +...+..+-..+.+.|++++|++.|.+      +.+...+..+...+.+.|
T Consensus        71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g  144 (291)
T 3mkr_A           71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLD  144 (291)
T ss_dssp             HHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCC
Confidence            5566667777777777777653    14 344455555777777777777777776      345567777777888888


Q ss_pred             CchhHHHHHHHHHHhCCCcchHH---HHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVV---KTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      ++++|.+.++.+.+..  |+...   ....+..+...|++++|..+|+++.+  | +...|+.+..++.+.|++++|...
T Consensus       145 ~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~  222 (291)
T 3mkr_A          145 RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV  222 (291)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888888887653  44321   12233444455788888888888762  3 666788888888888888888888


Q ss_pred             HHHHHhc
Q 045063          165 FQAMTRE  171 (175)
Q Consensus       165 ~~~m~~~  171 (175)
                      |++..+.
T Consensus       223 l~~al~~  229 (291)
T 3mkr_A          223 LQEALDK  229 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8887653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.27  E-value=1.3e-10  Score=86.61  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=40.1

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          110 EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +..++..+...|.+.|++++|.+.|+...  .| +..+|+.+...|.+.|++++|...|++..+
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  275 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE  275 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45566667777777777777777776654  22 455666677777777777777777666554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.26  E-value=1.6e-10  Score=81.08  Aligned_cols=154  Identities=10%  Similarity=0.013  Sum_probs=122.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+...|+++.|...|++..+   .+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+.+.|++
T Consensus        29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  107 (243)
T 2q7f_A           29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMY  107 (243)
T ss_dssp             -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccH
Confidence            66778899999999999999754   367788999999999999999999999987763 23567888899999999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...+++..+.. +.+...+..+...|.+.|++++|...++...   ..+...|..+...+.+.|++++|...|++..
T Consensus       108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  186 (243)
T 2q7f_A          108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVT  186 (243)
T ss_dssp             HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999998764 3467789999999999999999999999876   2367789999999999999999999999886


Q ss_pred             hc
Q 045063          170 RE  171 (175)
Q Consensus       170 ~~  171 (175)
                      +.
T Consensus       187 ~~  188 (243)
T 2q7f_A          187 EQ  188 (243)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.25  E-value=6.6e-10  Score=70.35  Aligned_cols=127  Identities=12%  Similarity=0.090  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS  122 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  122 (175)
                      .|..+...+...|++++|.+.|.++.+.. +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            56778888889999999999999987653 2355678888888888999999999999988764 345678888899999


Q ss_pred             hcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          123 KYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       123 ~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      ..|++++|.+.++.+.+   .+...|..+...+.+.|+.++|...++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            99999999999988762   35677888999999999999999999988764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.24  E-value=7e-11  Score=90.51  Aligned_cols=140  Identities=9%  Similarity=-0.017  Sum_probs=95.4

Q ss_pred             CCcchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063           11 PAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP   90 (175)
Q Consensus        11 ~~~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~   90 (175)
                      ...+.++.+|.+.|+++++.++++   .|+..+|+.+...|...|++++|...|..+         ..|..+.+++.+.|
T Consensus        95 ~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg  162 (449)
T 1b89_A           95 YVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG  162 (449)
T ss_dssp             --------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred             hhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence            345669999999999999998886   377789999999999999999999999987         48999999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++++|.+.+...      .++.+|..++.+|...|+++.|......+. .+..-...++..|.+.|++++|..+++.-.
T Consensus       163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999987      378999999999999999999988777655 333334468999999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.24  E-value=1.2e-10  Score=81.46  Aligned_cols=150  Identities=13%  Similarity=-0.013  Sum_probs=67.0

Q ss_pred             hhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC-----
Q 045063           18 IADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL-----   89 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~-----   89 (175)
                      ..+.+.|++++|...|++..+  | +...|..+-.++.+.|++++|...|++..+.. +-+...+..+-.++.+.     
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~   91 (217)
T 2pl2_A           13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAE   91 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhh
Confidence            334445555555555554332  1 33444444455555555555555555543331 11223444444444444     


Q ss_pred             ------CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CCchhHHHHHHHHHhcCChHHH
Q 045063           90 ------PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KDVVTWNALLSSFLRHGLAKEA  161 (175)
Q Consensus        90 ------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a  161 (175)
                            |++++|...+++..+.. +-+...|..+-..|...|++++|...|+...+  .+...|..+-..|...|++++|
T Consensus        92 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A  170 (217)
T 2pl2_A           92 DRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEA  170 (217)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHH
Confidence                  45555555554444421 11233444444444555555555444444321  2333444444444445555555


Q ss_pred             HHHHHHHH
Q 045063          162 FGVFQAMT  169 (175)
Q Consensus       162 ~~~~~~m~  169 (175)
                      ...|++..
T Consensus       171 ~~~~~~al  178 (217)
T 2pl2_A          171 LAQYAKAL  178 (217)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.23  E-value=1.6e-10  Score=86.23  Aligned_cols=154  Identities=14%  Similarity=0.001  Sum_probs=121.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcC---------------------
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTC---------------------   71 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~---------------------   71 (175)
                      +-.++.+.|+++.|...|++..+   .+...|..+..+|.+.|++++|...|+++.+..                     
T Consensus       105 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~  184 (365)
T 4eqf_A          105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS  184 (365)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHH
Confidence            66666777777777777776542   245667777777777777777777777664321                     


Q ss_pred             ---------------------CCC---CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063           72 ---------------------LNL---TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        72 ---------------------~~~---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  127 (175)
                                           ..|   +..++..+-..+.+.|++++|...+++..+.. +.+..+|..+..+|.+.|++
T Consensus       185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  263 (365)
T 4eqf_A          185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS  263 (365)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence                                 012   56788889999999999999999999998763 34678999999999999999


Q ss_pred             HHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          128 GESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       128 ~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ++|.+.|+...  .| +...|..+...|.+.|++++|...|++..+
T Consensus       264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS  309 (365)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999876  34 577899999999999999999999999865

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.21  E-value=1.1e-09  Score=81.34  Aligned_cols=154  Identities=9%  Similarity=0.077  Sum_probs=84.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+.+.|+++.|...|+++.+   .+...|..+..++.+.|++++|.+.|.+..+.. +.+..++..+..++...|++
T Consensus        70 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~  148 (368)
T 1fch_A           70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ  148 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence            44555566666666666666532   244455556666666666666666666655442 22344555555555555555


Q ss_pred             hhHHHHHHHHHHhCC-----------------------------------------------Cc---chHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGT-----------------------------------------------DS---EPVVKTALMDMYS  122 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~-----------------------------------------------~~---~~~~~~~li~~~~  122 (175)
                      ++|...++...+...                                               .|   +..++..+...|.
T Consensus       149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~  228 (368)
T 1fch_A          149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN  228 (368)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence            555555554443210                                               11   2445566666666


Q ss_pred             hcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          123 KYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       123 ~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +.|++++|...++...  .| +...|..+...|.+.|++++|...|++..+
T Consensus       229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  279 (368)
T 1fch_A          229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  279 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666554  22 344566666666666666666666665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.2e-09  Score=79.67  Aligned_cols=153  Identities=6%  Similarity=-0.160  Sum_probs=87.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~   91 (175)
                      +..++...|++++|...|+++.+   .+...|..+...+...| ++++|...|.+..+.. +.+...|..+..++...|+
T Consensus        62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  140 (330)
T 3hym_B           62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESE  140 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccC
Confidence            44445555555555555555432   24445555566666666 6666666666654432 1223355556666666666


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +++|...+++..+.. +.+...+..+...|...|++++|.+.++...+  | +...|..+...+.+.|++++|...+++.
T Consensus       141 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          141 HDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             HHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            666666666665542 22344555566666666666666666666542  2 4456666666667777777777766665


Q ss_pred             Hh
Q 045063          169 TR  170 (175)
Q Consensus       169 ~~  170 (175)
                      .+
T Consensus       220 ~~  221 (330)
T 3hym_B          220 LE  221 (330)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.8e-09  Score=78.72  Aligned_cols=152  Identities=7%  Similarity=-0.081  Sum_probs=79.1

Q ss_pred             hhhhhcCCC-ChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPK-RYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~-~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~   91 (175)
                      +-..+...| +++.|...|++..+   .+...|..+..++.+.|++++|...|.+..+... .+...+..+-..+...|+
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence            444555555 56666666665432   2344555555566666666666666665544321 122344445555555555


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC-----------C-CchhHHHHHHHHHhcCChH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF-----------K-DVVTWNALLSSFLRHGLAK  159 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----------~-~~~~~~~li~~~~~~g~~~  159 (175)
                      +++|...+++..+.. +.+...+..+...|.+.|++++|...++...+           + +...|..+...|.+.|+++
T Consensus       175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            555555555555432 22344555555555555555555555554431           1 2335555555555555555


Q ss_pred             HHHHHHHHHH
Q 045063          160 EAFGVFQAMT  169 (175)
Q Consensus       160 ~a~~~~~~m~  169 (175)
                      +|...|++..
T Consensus       254 ~A~~~~~~a~  263 (330)
T 3hym_B          254 EALDYHRQAL  263 (330)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.20  E-value=1.4e-09  Score=80.85  Aligned_cols=154  Identities=9%  Similarity=-0.003  Sum_probs=126.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC--------------------
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL--------------------   72 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~--------------------   72 (175)
                      +..++.+.|+++.|...|++..+   .+..++..+..+|.+.|++++|.+.|.++.+...                    
T Consensus       104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (368)
T 1fch_A          104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP  183 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccH
Confidence            66778888888888888887642   3666788888888888888888888877654321                    


Q ss_pred             ---------------------------CC---CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063           73 ---------------------------NL---TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS  122 (175)
Q Consensus        73 ---------------------------~~---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  122 (175)
                                                 .|   +..++..+...+.+.|++++|...+++..+.. +.+...|..+...|.
T Consensus       184 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~  262 (368)
T 1fch_A          184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLA  262 (368)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence                                       12   45688888999999999999999999998763 345779999999999


Q ss_pred             hcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          123 KYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       123 ~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +.|++++|...|+...  .| +...|..+...|.+.|++++|...|++..+
T Consensus       263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999876  33 567899999999999999999999998765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.1e-09  Score=77.29  Aligned_cols=154  Identities=10%  Similarity=-0.044  Sum_probs=119.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-C-------chhHHHHHHHHHhCCCcchHHHHHHHHHhcC--------------
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-D-------LSSLNSQLFSYTRSRNFPATWALFCYMHSTC--------------   71 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~-------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--------------   71 (175)
                      +-.++...|+++.|...|++..+  | +       ...|..+..++.+.|++++|...|.+..+..              
T Consensus        44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  123 (258)
T 3uq3_A           44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK  123 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence            66778888888888888888653  2 1       4678888888888899999988888887632              


Q ss_pred             ----------CCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--
Q 045063           72 ----------LNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--  138 (175)
Q Consensus        72 ----------~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--  138 (175)
                                ..|+ ...+..+-..+...|++++|...+++..+.. +.+...|..+...|.+.|++++|.+.|+...  
T Consensus       124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence                      2333 3467777788888888889988888888753 3456788888888888999999888888875  


Q ss_pred             CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          139 FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       139 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .| +...|..+...+.+.|+.++|.+.|++..+
T Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          203 DPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            23 566788888888888999999888887754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.19  E-value=8.7e-10  Score=78.62  Aligned_cols=153  Identities=7%  Similarity=-0.163  Sum_probs=117.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC-------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG-------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~   88 (175)
                      +.......|+++.|...|+++.+.       +...|..+..++...|++++|...|.+..+.. +.+..++..+-.++.+
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~   89 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQ   89 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Confidence            444566778899999998887542       45668888888889999999999999887652 2356688888888888


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      .|++++|...+++..+.. +.+...+..+...|.+.|++++|...|+...  .|+...+..++..+...|+.++|...++
T Consensus        90 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  168 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK  168 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999888753 3356788888889999999999999888876  4555555555555667788888888887


Q ss_pred             HHHh
Q 045063          167 AMTR  170 (175)
Q Consensus       167 ~m~~  170 (175)
                      +...
T Consensus       169 ~~~~  172 (275)
T 1xnf_A          169 QHFE  172 (275)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.19  E-value=8.6e-10  Score=77.76  Aligned_cols=156  Identities=8%  Similarity=0.023  Sum_probs=131.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcC--CCCC----HhhHHHHHHHHh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTC--LNLT----AYTFTPVLGACS   87 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~~~----~~t~~~ll~~~~   87 (175)
                      +-..+...|+++.|...|++..+  .+...|..+..++.+.|++++|.+.|.+..+..  ..++    ..++..+-.++.
T Consensus        11 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~   90 (258)
T 3uq3_A           11 EGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH   90 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence            55677889999999999998643  677889999999999999999999999987642  2223    468889999999


Q ss_pred             cCCCchhHHHHHHHHHHhC------------------------CCc-chHHHHHHHHHHHhcCChHHHHHHHHhcc---C
Q 045063           88 ALPAPERGKQVHALMIKGG------------------------TDS-EPVVKTALMDMYSKYGLLGESVEAFKEIE---F  139 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~~------------------------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~  139 (175)
                      +.|++++|...+++..+..                        ..| +...|..+...|...|++++|...++...   .
T Consensus        91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  170 (258)
T 3uq3_A           91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP  170 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence            9999999999999998732                        223 34578889999999999999999999976   2


Q ss_pred             CCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          140 KDVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       140 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .+...|..+...|.+.|++++|...|++..+.
T Consensus       171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            36778999999999999999999999998754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.19  E-value=7.9e-10  Score=77.21  Aligned_cols=152  Identities=12%  Similarity=0.020  Sum_probs=118.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhC-----------CCcchHHHHHHHHHhcCCCCCHhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRS-----------RNFPATWALFCYMHSTCLNLTAYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~-----------g~~~~a~~l~~~m~~~~~~~~~~t~~~   81 (175)
                      +-.++.+.|++++|...|++..+  | +...|..+-.++.+.           |++++|...|.+..+.. +-+...+..
T Consensus        45 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~  123 (217)
T 2pl2_A           45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQ  123 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence            66788899999999999998753  4 667889999999999           99999999999987652 124568888


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCCh
Q 045063           82 VLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLA  158 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~  158 (175)
                      +-.++.+.|++++|...+++..+..  .+...+..+..+|...|++++|...|+...  .| +...+..+...+.+.|+.
T Consensus       124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence            8899999999999999999999877  788899999999999999999999999976  34 667888999999999999


Q ss_pred             HHHHHHHHHHHh
Q 045063          159 KEAFGVFQAMTR  170 (175)
Q Consensus       159 ~~a~~~~~~m~~  170 (175)
                      ++|...|++...
T Consensus       202 ~~A~~~~~~~~~  213 (217)
T 2pl2_A          202 EEAARAAALEHH  213 (217)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHhh
Confidence            999999887643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.18  E-value=6.7e-10  Score=90.57  Aligned_cols=152  Identities=5%  Similarity=-0.046  Sum_probs=132.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~   91 (175)
                      |=.++.+.|++++|.+.|++..+  | +...|+.+-.+|.+.|++++|++.|++..+.  .|+ ...|..+-.++.+.|+
T Consensus        15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~   92 (723)
T 4gyw_A           15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD   92 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            67788899999999999999753  4 6778999999999999999999999998765  344 5589999999999999


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      +++|.+.|++..+.. +-+...|+.+-..|.+.|++++|.+.|++..  .| +...|..+...|...|++++|.+.+++.
T Consensus        93 ~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka  171 (723)
T 4gyw_A           93 VQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL  171 (723)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence            999999999998753 2346799999999999999999999999876  44 5678999999999999999999998886


Q ss_pred             Hh
Q 045063          169 TR  170 (175)
Q Consensus       169 ~~  170 (175)
                      .+
T Consensus       172 l~  173 (723)
T 4gyw_A          172 VS  173 (723)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.14  E-value=7e-09  Score=73.90  Aligned_cols=155  Identities=9%  Similarity=-0.037  Sum_probs=126.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH--hhHHHHHHHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA--YTFTPVLGACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~t~~~ll~~~~~~~   90 (175)
                      .-..+...|+++.|...|++..+  | +...|..+..+|.+.|++++|.+.|.+..+.+-.|+.  .+|..+-.++.+.|
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~   88 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG   88 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence            45677889999999999999753  3 5668999999999999999999999999874422322  34888999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ++++|...++...+.. +.+...|..+...|...|++++|.+.|+...+  | +...|..+-..+...+++++|...|++
T Consensus        89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  167 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK  167 (272)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998853 34567999999999999999999999999874  3 455666666345556699999999998


Q ss_pred             HHhc
Q 045063          168 MTRE  171 (175)
Q Consensus       168 m~~~  171 (175)
                      ..+.
T Consensus       168 a~~~  171 (272)
T 3u4t_A          168 VLEL  171 (272)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8753

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.12  E-value=7.7e-10  Score=80.65  Aligned_cols=148  Identities=10%  Similarity=-0.027  Sum_probs=127.2

Q ss_pred             hhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           19 ADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      .+...|+++.|.+.|+++.+   .+...+..+...+.+.|++++|.+.|.+..+.. +.+..++..+...+.+.|++++|
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence            47888999999999998753   367789999999999999999999999987663 33566899999999999999999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-------------CchhHHHHHHHHHhcCChHH
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-------------DVVTWNALLSSFLRHGLAKE  160 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-------------~~~~~~~li~~~~~~g~~~~  160 (175)
                      ...+++..+.. +.+...|..+...|.+.|++++|.+.++...  .|             +...|..+..++.+.|+.++
T Consensus       226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (327)
T 3cv0_A          226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL  304 (327)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence            99999998753 3457789999999999999999999999875  23             35689999999999999999


Q ss_pred             HHHHHHHH
Q 045063          161 AFGVFQAM  168 (175)
Q Consensus       161 a~~~~~~m  168 (175)
                      |..++++.
T Consensus       305 A~~~~~~~  312 (327)
T 3cv0_A          305 VELTYAQN  312 (327)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHHHH
Confidence            99988754

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.12  E-value=6.2e-09  Score=75.82  Aligned_cols=91  Identities=7%  Similarity=-0.097  Sum_probs=47.0

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~  154 (175)
                      .+..+...+.+.|++++|...+++..+.. +.+...|..+...|.+.|++++|.+.|+...  .| +...|..+...|.+
T Consensus       174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            44444445555555555555555555432 2234455555555555555555555555543  12 34455555555555


Q ss_pred             cCChHHHHHHHHHHH
Q 045063          155 HGLAKEAFGVFQAMT  169 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~  169 (175)
                      .|++++|.+.|++..
T Consensus       253 ~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAI  267 (327)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHH
Confidence            566666655555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.09  E-value=3e-09  Score=82.28  Aligned_cols=153  Identities=7%  Similarity=-0.061  Sum_probs=132.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      +...+...|+++.|...|++..+  |+...|..+..++.+.|++++|...|.+..+.. +.+..++..+...+...|+++
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence            77788899999999999998753  447778999999999999999999999997653 235568889999999999999


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +|...+++..+.. +.+...+..+...|.+.|++++|...++...+  | +...|..+...|.+.|++++|...+++..+
T Consensus       322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999998753 34677899999999999999999999998762  3 677899999999999999999999998865

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.08  E-value=5.6e-09  Score=81.33  Aligned_cols=153  Identities=14%  Similarity=0.017  Sum_probs=132.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhcc--CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           16 ISIADALPKRYVYTHQVFDEIS--HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      +-..+...|+++.|...|++..  .|+...|..+...+.+.|++++|...|.+..+.. +.+..++..+-..+.+.|+++
T Consensus       249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          249 TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence            4467788899999999999975  3667788999999999999999999999997763 235668999999999999999


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +|...+++..+.. +.+...|..+...|...|++++|...++...  .| +...|..+...+.+.|++++|...|++..+
T Consensus       328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999864 3356789999999999999999999999876  33 667899999999999999999999999765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.07  E-value=5.8e-09  Score=76.75  Aligned_cols=152  Identities=4%  Similarity=-0.082  Sum_probs=103.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC----CHhhHHHH------
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL----TAYTFTPV------   82 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~----~~~t~~~l------   82 (175)
                      +-.++...|+++.|...|++..+  | +...|..+..++.+.|++++|...|.+..+.  .|    +...+..+      
T Consensus        43 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~  120 (359)
T 3ieg_A           43 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEM  120 (359)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHH
Confidence            55666677777777777776542  2 4566777777777777777777777777544  23    22233333      


Q ss_pred             ------HHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHH
Q 045063           83 ------LGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFL  153 (175)
Q Consensus        83 ------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~  153 (175)
                            ...+...|++++|...++...+.. +.+...+..+...|...|++++|...++...+   .+...|..+...|.
T Consensus       121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  199 (359)
T 3ieg_A          121 QRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY  199 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                  356667777777777777777653 34556777777778888888888877777653   25567777777788


Q ss_pred             hcCChHHHHHHHHHHHh
Q 045063          154 RHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       154 ~~g~~~~a~~~~~~m~~  170 (175)
                      ..|++++|...|++..+
T Consensus       200 ~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          200 QLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHh
Confidence            88888888888777654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.07  E-value=2.3e-09  Score=82.90  Aligned_cols=147  Identities=9%  Similarity=-0.019  Sum_probs=127.7

Q ss_pred             CCCChhHHHHHhhhccC----------------C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHH
Q 045063           22 LPKRYVYTHQVFDEISH----------------G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLG   84 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~   84 (175)
                      +.|+++.|...|+++.+                | +...|..+..++.+.|++++|...|++..+....  ...+..+..
T Consensus       201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~  278 (514)
T 2gw1_A          201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMAL  278 (514)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHH
Confidence            58999999999998754                2 3567888999999999999999999999876543  778999999


Q ss_pred             HHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHH
Q 045063           85 ACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEA  161 (175)
Q Consensus        85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a  161 (175)
                      ++...|++++|...++...+.. +.+...|..+...|...|++++|...++...   ..+...|..+...|...|++++|
T Consensus       279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  357 (514)
T 2gw1_A          279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC  357 (514)
T ss_dssp             HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999998753 3467789999999999999999999999875   23677899999999999999999


Q ss_pred             HHHHHHHHhc
Q 045063          162 FGVFQAMTRE  171 (175)
Q Consensus       162 ~~~~~~m~~~  171 (175)
                      ...+++..+.
T Consensus       358 ~~~~~~~~~~  367 (514)
T 2gw1_A          358 ETLFSEAKRK  367 (514)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.07  E-value=6.1e-09  Score=76.36  Aligned_cols=154  Identities=10%  Similarity=0.039  Sum_probs=123.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-Cch-hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH-hcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLS-SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC-SALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~-~~~~   90 (175)
                      +...+.+.|+++.|..+|++..+  | +.. .|..+...+.+.|++++|.++|.+..+... .+...|....... ...|
T Consensus       105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~  183 (308)
T 2ond_A          105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK  183 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcC
Confidence            67778889999999999999754  3 343 799999999999999999999999977632 3344454333332 2379


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-------CchhHHHHHHHHHhcCChHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-------DVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      +.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|+.....       ....|..++....+.|+.+.|..
T Consensus       184 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~  262 (308)
T 2ond_A          184 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999998752 346779999999999999999999999998651       34579999999999999999999


Q ss_pred             HHHHHHhc
Q 045063          164 VFQAMTRE  171 (175)
Q Consensus       164 ~~~~m~~~  171 (175)
                      ++++..+.
T Consensus       263 ~~~~a~~~  270 (308)
T 2ond_A          263 VEKRRFTA  270 (308)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.07  E-value=2.3e-09  Score=77.58  Aligned_cols=155  Identities=15%  Similarity=0.110  Sum_probs=126.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-------C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCC-Hh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-------G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLT-AY   77 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~-~~   77 (175)
                      +-..|...|++++|...|++...       +    ....+..+...|...|++++|...|.+..+.      +-.|. ..
T Consensus        75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (311)
T 3nf1_A           75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK  154 (311)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            77788899999999999998642       1    3556889999999999999999999998754      22333 34


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHh------CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC-----------
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKG------GTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF-----------  139 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----------  139 (175)
                      .+..+-..+...|++++|...+++..+.      +-.|+ ...+..+...|.+.|++++|.+.++...+           
T Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  234 (311)
T 3nf1_A          155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD  234 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            7888889999999999999999999864      22333 45789999999999999999999988652           


Q ss_pred             ----------------------------------------C-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          140 ----------------------------------------K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       140 ----------------------------------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                                                              | +..+|..+...|.+.|++++|.+.|++..+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                                    1 345688899999999999999999998765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.06  E-value=6.7e-09  Score=76.43  Aligned_cols=153  Identities=7%  Similarity=-0.042  Sum_probs=129.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+.+.|+++.|...|++..+   .+...|..+..++.+.|++++|...|++..+.. +-+...+..+-.++.+.|++
T Consensus         9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~   87 (359)
T 3ieg_A            9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL   87 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence            45677889999999999998753   367789999999999999999999999997762 23456899999999999999


Q ss_pred             hhHHHHHHHHHHhCCCc----chHHHHHH------------HHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDS----EPVVKTAL------------MDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFL  153 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~  153 (175)
                      ++|...++...+.  .|    +...+..+            ...+...|++++|.+.++...  .| +...|..+...+.
T Consensus        88 ~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (359)
T 3ieg_A           88 DEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI  165 (359)
T ss_dssp             HHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            9999999999874  34    44455555            588999999999999999976  23 6778999999999


Q ss_pred             hcCChHHHHHHHHHHHhc
Q 045063          154 RHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       154 ~~g~~~~a~~~~~~m~~~  171 (175)
                      ..|++++|...+++..+.
T Consensus       166 ~~~~~~~A~~~~~~~~~~  183 (359)
T 3ieg_A          166 KEGEPRKAISDLKAASKL  183 (359)
T ss_dssp             HTTCHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHh
Confidence            999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.05  E-value=4.4e-09  Score=76.08  Aligned_cols=155  Identities=14%  Similarity=0.060  Sum_probs=127.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--------C---CchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCC-Hh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--------G---DLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLT-AY   77 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~-~~   77 (175)
                      +-..+...|+++.|...|++..+        .   ....+..+..+|...|++++|...|.+..+.      +-.|. ..
T Consensus        33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  112 (311)
T 3nf1_A           33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA  112 (311)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence            77888899999999999998754        1   3456888999999999999999999998754      22333 45


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHh------CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-------C---
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKG------GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-------K---  140 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~---  140 (175)
                      ++..+-..+...|++++|...+++..+.      +-.| ....+..+...|...|++++|.+.++...+       +   
T Consensus       113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  192 (311)
T 3nf1_A          113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP  192 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            8888899999999999999999998864      2223 345788999999999999999999988752       1   


Q ss_pred             -CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          141 -DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       141 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                       ...+|..+...|.+.|++++|...+++..+
T Consensus       193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          193 NVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             244688899999999999999999999875

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.04  E-value=5.8e-09  Score=74.30  Aligned_cols=153  Identities=11%  Similarity=-0.046  Sum_probs=113.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-.++...|+++.|...|++..+   .+...|..+..+|.+.|++++|.+.|.+..+.. +.+..++..+-.++.+.|++
T Consensus        49 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~  127 (275)
T 1xnf_A           49 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRD  127 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccH
Confidence            77778888999999999988753   357778888899999999999999999887652 23456788888888899999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc---------------------------------cC
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI---------------------------------EF  139 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---------------------------------~~  139 (175)
                      ++|...+++..+..  |+.......+..+...|++++|...++..                                 ..
T Consensus       128 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  205 (275)
T 1xnf_A          128 KLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT  205 (275)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence            99999998888743  44443333444445556666666666432                                 21


Q ss_pred             C-------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          140 K-------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       140 ~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .       +...|..+...|.+.|++++|...|++..+.
T Consensus       206 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            1       1467788888899999999999999988754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.04  E-value=4.3e-09  Score=81.89  Aligned_cols=152  Identities=10%  Similarity=0.012  Sum_probs=132.5

Q ss_pred             hhhhhcCCCCh-hHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC--
Q 045063           16 ISIADALPKRY-VYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL--   89 (175)
Q Consensus        16 ll~~~~~~~~~-~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~--   89 (175)
                      +-.++...|++ ++|.+.|++..+  | +...|..+-.+|.+.|++++|.+.|.+..+..  |+...+..+-..+...  
T Consensus       108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~  185 (474)
T 4abn_A          108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQT  185 (474)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhcc
Confidence            66778899999 999999998753  3 57789999999999999999999999987654  6678889999999999  


Q ss_pred             -------CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc--------CChHHHHHHHHhcc--CC----CchhHHHH
Q 045063           90 -------PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY--------GLLGESVEAFKEIE--FK----DVVTWNAL  148 (175)
Q Consensus        90 -------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~--~~----~~~~~~~l  148 (175)
                             |++++|...+++..+.. +.+...|..+..+|...        |++++|.+.|+...  .|    +...|..+
T Consensus       186 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l  264 (474)
T 4abn_A          186 DSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNR  264 (474)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred             CChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence                   99999999999998863 34577999999999998        99999999999876  33    66789999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 045063          149 LSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       149 i~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      -..|.+.|++++|.+.|++..+
T Consensus       265 g~~~~~~g~~~~A~~~~~~al~  286 (474)
T 4abn_A          265 ATLHKYEESYGEALEGFSQAAA  286 (474)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999998765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.02  E-value=4.6e-09  Score=66.38  Aligned_cols=122  Identities=9%  Similarity=0.003  Sum_probs=104.1

Q ss_pred             hhhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063           15 CISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA   91 (175)
Q Consensus        15 ~ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~   91 (175)
                      .+...+...|+++.|...|+++.+   .+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|+
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~   84 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD   84 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence            356678888999999999998753   366778889999999999999999999997763 3456688888999999999


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +++|...++++.+.. +.+...+..+...|.+.|++++|...++.+.
T Consensus        85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            999999999998764 3457788999999999999999999998865

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.01  E-value=6.2e-09  Score=74.11  Aligned_cols=155  Identities=15%  Similarity=0.128  Sum_probs=126.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC----------C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCC-Hh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH----------G-DLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLT-AY   77 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~-~~   77 (175)
                      +-..|...|+++.|...|++..+          + ...+|..+-.+|...|++++|.+.|.+..+.      .-.|+ ..
T Consensus        49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  128 (283)
T 3edt_B           49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK  128 (283)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            77888899999999999998642          1 3556899999999999999999999998654      11233 45


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHh------CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-----------
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKG------GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-----------  139 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----------  139 (175)
                      ++..+-..+...|++++|...+++..+.      +-.| ...++..+...|.+.|++++|.+.++...+           
T Consensus       129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  208 (283)
T 3edt_B          129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN  208 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            8888999999999999999999999864      1133 346889999999999999999999987652           


Q ss_pred             ----------------------------------------C-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          140 ----------------------------------------K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       140 ----------------------------------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                                                              | ...+|..+...|.+.|++++|...|++..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                                                    1 123678888999999999999999998765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.98  E-value=4.2e-08  Score=70.29  Aligned_cols=143  Identities=10%  Similarity=-0.033  Sum_probs=83.0

Q ss_pred             CCChhHHHHHhhhccC-CCchhHHHHHHHHHh----CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc----CCCch
Q 045063           23 PKRYVYTHQVFDEISH-GDLSSLNSQLFSYTR----SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA----LPAPE   93 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~----~~~~~   93 (175)
                      .++++.|...|++..+ .+...+..+-..|..    .+++++|...|++..+.+   +...+..+-..+.+    .++++
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~  131 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFK  131 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHH
Confidence            5666666666665443 244555556666666    666666666666655543   44455555555555    66666


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CchhHHHHHHHHHh----cCChHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFK-DVVTWNALLSSFLR----HGLAKEAFGV  164 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~a~~~  164 (175)
                      +|...+++..+.+   +...+..+-..|..    .+++++|.+.|+...+. +...+..+-..|..    .++.++|...
T Consensus       132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~  208 (273)
T 1ouv_A          132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR  208 (273)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            6666666665543   34455555555555    66666666666655433 44455555666666    6666666666


Q ss_pred             HHHHHhc
Q 045063          165 FQAMTRE  171 (175)
Q Consensus       165 ~~~m~~~  171 (175)
                      |++..+.
T Consensus       209 ~~~a~~~  215 (273)
T 1ouv_A          209 YSKACEL  215 (273)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            6665544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.95  E-value=2.6e-08  Score=66.39  Aligned_cols=128  Identities=13%  Similarity=0.011  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      ..|..+...+.+.|++++|.+.|++..+. .+.+...+..+...+...|++++|...++...+.. +.+...+..+...|
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            45777888899999999999999998654 22356688889999999999999999999998763 34677899999999


Q ss_pred             HhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          122 SKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       122 ~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      ...|++++|.+.++...   ..+...|..+...+...|++++|...+++..+.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            99999999999999876   336778888999999999999999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.94  E-value=1.8e-08  Score=71.64  Aligned_cols=150  Identities=11%  Similarity=-0.007  Sum_probs=120.0

Q ss_pred             cCCCChhHHHHHhhhccC-------C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCC-HhhHHHH
Q 045063           21 ALPKRYVYTHQVFDEISH-------G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLT-AYTFTPV   82 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~-~~t~~~l   82 (175)
                      ...|+++.|...|++..+       +    ...++..+-.+|...|++++|...|.+..+.      +-.|. ..++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            456788888888776532       2    3556889999999999999999999998754      22333 3488999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHh------CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-------C----Cchh
Q 045063           83 LGACSALPAPERGKQVHALMIKG------GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-------K----DVVT  144 (175)
Q Consensus        83 l~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~----~~~~  144 (175)
                      -.++...|++++|...+.+..+.      .-.| ....+..+...|...|++++|.+.++...+       +    ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998864      1123 356889999999999999999999988752       1    2457


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          145 WNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       145 ~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      |..+...|.+.|++++|...+++..+
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88899999999999999999998865

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.93  E-value=5.7e-08  Score=75.60  Aligned_cols=145  Identities=10%  Similarity=0.004  Sum_probs=123.6

Q ss_pred             CChhHHHHHhhhccC--CC--------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           24 KRYVYTHQVFDEISH--GD--------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        24 ~~~~~a~~~f~~~~~--~~--------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      |+++.|..+|+++.+  |+        ..+|..+-..+...|++++|...|.+..+.  .|+..++..+-..+...|+++
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~  293 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ  293 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence            478899999998764  32        224777778888999999999999999775  355778999999999999999


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +|...++...+.. +.+..+|..+...|...|++++|.+.|+...  .| +...|..+...|.+.|++++|...+++..+
T Consensus       294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  372 (537)
T 3fp2_A          294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL  372 (537)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999998764 3467789999999999999999999999876  33 677899999999999999999999999876


Q ss_pred             c
Q 045063          171 E  171 (175)
Q Consensus       171 ~  171 (175)
                      .
T Consensus       373 ~  373 (537)
T 3fp2_A          373 K  373 (537)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.92  E-value=4.8e-08  Score=77.34  Aligned_cols=147  Identities=7%  Similarity=-0.130  Sum_probs=111.0

Q ss_pred             CCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHH
Q 045063           23 PKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVH   99 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~   99 (175)
                      .|++++|.+.|++..+  | +...|..+-..+.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4788999999998754  3 56778999999999999999999999987652 234568888899999999999999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 045063          100 ALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRH---GLAKEAFGVFQAMTRE  171 (175)
Q Consensus       100 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  171 (175)
                      ++..+.. +.+...+..+..+|.+.|++++|.+.++...  .| +...|..+...+...   |+.++|.+.+++..+.
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9998763 3456789999999999999999999999876  33 567888899999999   9999999999988764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.92  E-value=1.1e-07  Score=68.14  Aligned_cols=146  Identities=11%  Similarity=-0.005  Sum_probs=72.3

Q ss_pred             hhcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHh----CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc----C
Q 045063           19 ADALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTR----SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA----L   89 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~----~   89 (175)
                      .+...|++++|.+.|++..++ +...+..+-..|..    .|++++|.+.|.+..+.+   +...+..+-..+..    .
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~   91 (273)
T 1ouv_A           15 KSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVS   91 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcc
Confidence            344445555555555554433 33444445555555    555555555555554443   33444444444544    5


Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CchhHHHHHHHHHh----cCChHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFK-DVVTWNALLSSFLR----HGLAKE  160 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~  160 (175)
                      +++++|...+++..+.+   +...+..+-..|..    .|++++|.+.|+...+. +...+..+-..|..    .++.++
T Consensus        92 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~  168 (273)
T 1ouv_A           92 QNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKK  168 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHH
Confidence            55555555555555432   34445555555555    55555555555554432 33344444444444    555555


Q ss_pred             HHHHHHHHHh
Q 045063          161 AFGVFQAMTR  170 (175)
Q Consensus       161 a~~~~~~m~~  170 (175)
                      |...|++..+
T Consensus       169 A~~~~~~a~~  178 (273)
T 1ouv_A          169 ALASYDKACD  178 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555554433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.92  E-value=1.1e-07  Score=63.98  Aligned_cols=130  Identities=6%  Similarity=-0.068  Sum_probs=110.9

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      ++..|..+-.+|.+.|++++|.+.|++..+.. +-+..++..+-.++.+.|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            46679999999999999999999999987652 2245588899999999999999999999988764 345668888889


Q ss_pred             HHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          120 MYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .+...++++.|.+.+....  .| +...|..+-..|.+.|++++|.+.|++..+.
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~  136 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI  136 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence            9999999999999998876  33 6778999999999999999999999988763

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=5.3e-08  Score=71.33  Aligned_cols=147  Identities=4%  Similarity=-0.078  Sum_probs=119.0

Q ss_pred             CCCCh-------hHHHHHhhhccC---C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-h-hHHHHHHHHhc
Q 045063           22 LPKRY-------VYTHQVFDEISH---G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-Y-TFTPVLGACSA   88 (175)
Q Consensus        22 ~~~~~-------~~a~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~-t~~~ll~~~~~   88 (175)
                      +.|++       ++|..+|++...   | +...|..+...+.+.|++++|.++|++..+  +.|+. . .|..+...+.+
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~  146 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR  146 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHH
T ss_pred             hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHH
Confidence            35776       899999998653   3 556899999999999999999999999977  34543 3 79999999999


Q ss_pred             CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH-hcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHH
Q 045063           89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS-KYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      .|++++|..+|++..+.. +++...|........ ..|++++|..+|+...+  | +...|..++..+.+.|+.++|..+
T Consensus       147 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~  225 (308)
T 2ond_A          147 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL  225 (308)
T ss_dssp             HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999998753 234455554443322 36999999999998763  3 677899999999999999999999


Q ss_pred             HHHHHhc
Q 045063          165 FQAMTRE  171 (175)
Q Consensus       165 ~~~m~~~  171 (175)
                      |++....
T Consensus       226 ~~~al~~  232 (308)
T 2ond_A          226 FERVLTS  232 (308)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhc
Confidence            9998875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.91  E-value=8.8e-08  Score=66.76  Aligned_cols=140  Identities=11%  Similarity=0.045  Sum_probs=112.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~   90 (175)
                      .-..+.+.|+++.|...|++..+    ++...+..+-.++.+.|++++|...|.+..+.  .| +...+..+-.++.+.|
T Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~   90 (228)
T 4i17_A           13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMK   90 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcc
Confidence            44567788999999999998642    56667777899999999999999999998764  34 4458888999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcch-------HHHHHHHHHHHhcCChHHHHHHHHhccCC--C---chhHHHHHHHHHhcCCh
Q 045063           91 APERGKQVHALMIKGGTDSEP-------VVKTALMDMYSKYGLLGESVEAFKEIEFK--D---VVTWNALLSSFLRHGLA  158 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~---~~~~~~li~~~~~~g~~  158 (175)
                      ++++|...+++..+... .+.       ..|..+-..+.+.|++++|.+.|+...+.  +   ...|..+-..|...|+.
T Consensus        91 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A           91 NNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999987532 233       45777788889999999999999998743  3   34677777778777777

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.85  E-value=2.4e-07  Score=64.51  Aligned_cols=131  Identities=11%  Similarity=0.034  Sum_probs=110.9

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      |...|...-..+.+.|++++|...|.+..+...+++...+..+-.++.+.|++++|...+++..+.. +.+...|..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence            4567778888999999999999999999887554677777778899999999999999999998753 235678999999


Q ss_pred             HHHhcCChHHHHHHHHhcc--CC-Cc-------hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          120 MYSKYGLLGESVEAFKEIE--FK-DV-------VTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~--~~-~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .|...|++++|...++...  .| +.       ..|..+-..+...|++++|.+.|++..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  146 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV  146 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence            9999999999999999876  34 33       45777778889999999999999988754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.85  E-value=7.1e-08  Score=64.85  Aligned_cols=152  Identities=8%  Similarity=-0.043  Sum_probs=115.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH-HhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA-CSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~-~~~~~~   91 (175)
                      .-..+.+.|+++.|...|++..+   .+...+..+-.++.+.|++++|...|++..+..  |+...+...... +.+.+.
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~   89 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA   89 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence            55677889999999999999764   367789999999999999999999999975542  333322221111 122223


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC---chhHHHHHHHHHhcCChHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KD---VVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      ...+...+++..+.. +-+...+..+...|...|++++|...|+...+  |+   ...|..+...+...|+.++|...|+
T Consensus        90 ~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~  168 (176)
T 2r5s_A           90 ESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR  168 (176)
T ss_dssp             SCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            345677888877643 23577899999999999999999999998763  32   4579999999999999999999998


Q ss_pred             HHHh
Q 045063          167 AMTR  170 (175)
Q Consensus       167 ~m~~  170 (175)
                      +...
T Consensus       169 ~al~  172 (176)
T 2r5s_A          169 RQLY  172 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.81  E-value=1.2e-07  Score=71.96  Aligned_cols=153  Identities=7%  Similarity=-0.008  Sum_probs=126.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCC-cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRN-FPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~   91 (175)
                      +-.++.+.|++++|...|++...  | +...|+.+-.++.+.|+ +++|+..|++..+... -+...|..+-.++.+.|+
T Consensus       103 lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~  181 (382)
T 2h6f_A          103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRD  181 (382)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccC
Confidence            55567778999999999998753  3 67789999999999996 9999999999977532 255689999999999999


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh-cCChHHH-----H
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR-HGLAKEA-----F  162 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~-~g~~~~a-----~  162 (175)
                      +++|...+++.++.. +-+...|..+-.++.+.|++++|...|+...  .| +...|+.+-..+.+ .|..++|     +
T Consensus       182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el  260 (382)
T 2h6f_A          182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV  260 (382)
T ss_dssp             CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            999999999999864 3467799999999999999999999999987  33 67789999999998 6665777     4


Q ss_pred             HHHHHHHh
Q 045063          163 GVFQAMTR  170 (175)
Q Consensus       163 ~~~~~m~~  170 (175)
                      +.|++..+
T Consensus       261 ~~~~~Al~  268 (382)
T 2h6f_A          261 QYTLEMIK  268 (382)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66766554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.81  E-value=7.1e-08  Score=65.63  Aligned_cols=150  Identities=9%  Similarity=-0.014  Sum_probs=112.0

Q ss_pred             cCCCChhHHHH---HhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHHHHhcCCCc
Q 045063           21 ALPKRYVYTHQ---VFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLGACSALPAP   92 (175)
Q Consensus        21 ~~~~~~~~a~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~~~~~~~~~   92 (175)
                      ...|++++|.+   .+..-+......+..+-..+...|++++|...|.+....    +..+. ..++..+-..+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            46799999999   554433345667899999999999999999999998652    22222 34778888889999999


Q ss_pred             hhHHHHHHHHHHh----CCCc--chHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC----chhHHHHHHHHHhcCC
Q 045063           93 ERGKQVHALMIKG----GTDS--EPVVKTALMDMYSKYGLLGESVEAFKEIEF-----KD----VVTWNALLSSFLRHGL  157 (175)
Q Consensus        93 ~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~  157 (175)
                      ++|...+++..+.    +-.+  ....+..+-..|...|++++|.+.+++..+     .+    ..++..+-..+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999988753    2122  234678888999999999999999888651     12    2245777888999999


Q ss_pred             hHHHHHHHHHHHh
Q 045063          158 AKEAFGVFQAMTR  170 (175)
Q Consensus       158 ~~~a~~~~~~m~~  170 (175)
                      +++|...+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.80  E-value=2.2e-07  Score=63.84  Aligned_cols=123  Identities=11%  Similarity=-0.087  Sum_probs=98.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      +-..+...|+++.|...|++...++...|..+..+|.+.|++++|.+.|.+..+.. +.+...+..+-.++.+.|++++|
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A   90 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA   90 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence            34556678999999999999887888888999999999999999999999887653 33456888888888999999999


Q ss_pred             HHHHHHHHHhCC--------------Cc-chHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063           96 KQVHALMIKGGT--------------DS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF  139 (175)
Q Consensus        96 ~~~~~~m~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  139 (175)
                      ...++...+...              .| +...+..+..+|.+.|++++|.+.|+...+
T Consensus        91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            999998886421              11 226788888889999999999999888763

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.79  E-value=2.2e-07  Score=63.84  Aligned_cols=124  Identities=10%  Similarity=0.013  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS  122 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  122 (175)
                      .+..+-..+.+.|++++|...|.+.    +.|+...+..+-.++.+.|++++|...+++..+.. +.+...|..+..+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            4556677888999999999999987    46788899999999999999999999999998764 346678999999999


Q ss_pred             hcCChHHHHHHHHhccC--C-Cc----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          123 KYGLLGESVEAFKEIEF--K-DV----------------VTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       123 ~~g~~~~a~~~~~~m~~--~-~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +.|++++|.+.|+...+  | +.                ..|..+-.+|.+.|+.++|.+.|++..+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            99999999999998763  2 22                67888999999999999999999987654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.79  E-value=1.1e-07  Score=67.77  Aligned_cols=155  Identities=6%  Similarity=0.037  Sum_probs=120.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-C---chhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-D---LSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACS   87 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~   87 (175)
                      +-..+.+.|+++.|...|+++..  | +   ...+..+-.+|.+.|++++|...|++..+... .|. ...+..+-.++.
T Consensus        21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~  100 (261)
T 3qky_A           21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY  100 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence            56677789999999999999864  3 3   45678888999999999999999999977532 233 346667777777


Q ss_pred             c--------CCCchhHHHHHHHHHHhCCCcchHHH-----------------HHHHHHHHhcCChHHHHHHHHhccC--C
Q 045063           88 A--------LPAPERGKQVHALMIKGGTDSEPVVK-----------------TALMDMYSKYGLLGESVEAFKEIEF--K  140 (175)
Q Consensus        88 ~--------~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~--~  140 (175)
                      +        .|++++|...+++..+... -+...+                 -.+...|.+.|++++|...|+...+  |
T Consensus       101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  179 (261)
T 3qky_A          101 KLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP  179 (261)
T ss_dssp             HHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            7        9999999999999987532 222333                 4557889999999999999999863  4


Q ss_pred             C----chhHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 045063          141 D----VVTWNALLSSFLRH----------GLAKEAFGVFQAMTRE  171 (175)
Q Consensus       141 ~----~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~  171 (175)
                      +    ...+..+..+|...          |++++|...|++..+.
T Consensus       180 ~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          180 DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            3    23577777778766          8899999999988753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.79  E-value=2.1e-07  Score=76.01  Aligned_cols=129  Identities=9%  Similarity=-0.025  Sum_probs=112.4

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM  118 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  118 (175)
                      +...|+.+-..|.+.|++++|.+.|++..+.  .|+ ..++..+-.++.+.|++++|.+.|++..+.. +-+...|..+-
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            4567999999999999999999999998765  344 5689999999999999999999999998853 23467999999


Q ss_pred             HHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          119 DMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .+|.+.|++++|.+.|++..  .| +...|+.+-..|.+.|++++|++.|++..+.
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999876  34 6678999999999999999999999987653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.76  E-value=2.4e-07  Score=67.24  Aligned_cols=154  Identities=8%  Similarity=-0.041  Sum_probs=118.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC-----C----chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CC----HhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG-----D----LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LT----AYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~-----~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~----~~t~~~   81 (175)
                      .+..+.+.|+++.|.+.+++....     +    ...+..+...+...|++++|+..|.+..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            366778899999999999987542     1    123445777777888999999999999874322 22    226899


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHh-----CCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccC----C-C----chhHH
Q 045063           82 VLGACSALPAPERGKQVHALMIKG-----GTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEF----K-D----VVTWN  146 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~----~~~~~  146 (175)
                      +-.++...|++++|...+++..+.     +..+.. .++..+...|.+.|++++|.+.++...+    . +    ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999998841     222222 3789999999999999999999887652    1 1    45788


Q ss_pred             HHHHHHHhcCC-hHHHHHHHHHHH
Q 045063          147 ALLSSFLRHGL-AKEAFGVFQAMT  169 (175)
Q Consensus       147 ~li~~~~~~g~-~~~a~~~~~~m~  169 (175)
                      .+-.+|.+.|+ .++|.+.+++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH
Confidence            88889999995 699998888754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.75  E-value=1.8e-07  Score=73.43  Aligned_cols=153  Identities=10%  Similarity=0.021  Sum_probs=119.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CC--chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHH-HHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GD--LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVL-GACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll-~~~~~~~   90 (175)
                      +...+.+.|+++.|..+|++..+  |+  ...|..+...+.+.|++++|.++|.+..+... .+...|.... -.+...|
T Consensus       327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~  405 (530)
T 2ooe_A          327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK  405 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence            66777889999999999998753  33  24799999999999999999999999877522 1222222211 1233589


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-C----chhHHHHHHHHHhcCChHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-D----VVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      +.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|+....  | +    ...|...+.-....|+.+.+..
T Consensus       406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~  484 (530)
T 2ooe_A          406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  484 (530)
T ss_dssp             CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999988752 34578999999999999999999999999763  2 2    2379888998889999999999


Q ss_pred             HHHHHHh
Q 045063          164 VFQAMTR  170 (175)
Q Consensus       164 ~~~~m~~  170 (175)
                      +++++.+
T Consensus       485 ~~~r~~~  491 (530)
T 2ooe_A          485 VEKRRFT  491 (530)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.74  E-value=2.3e-07  Score=65.91  Aligned_cols=128  Identities=9%  Similarity=0.022  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc--hHHHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE--PVVKTALMDM  120 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~  120 (175)
                      .+-..-..+.+.|++++|.+.|.+..+... -+...+..+-.++.+.|++++|...+++..+..-.++  ...|..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            445566788899999999999999976522 2344888888899999999999999999988432222  2348999999


Q ss_pred             HHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          121 YSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       121 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      |...|++++|.+.|+...+  | +...|..+-..|...|++++|...|++..+.
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence            9999999999999998762  3 6678999999999999999999999887653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.74  E-value=1.8e-08  Score=78.38  Aligned_cols=152  Identities=11%  Similarity=-0.054  Sum_probs=127.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhC---------CCcchHHHHHHHHHhcCCCCCHhhHHHHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRS---------RNFPATWALFCYMHSTCLNLTAYTFTPVLG   84 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~---------g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~   84 (175)
                      +-.+|.+.|++++|.+.|++..+  |+...+..+-.+|.+.         |++++|.+.|++..+.. +-+...|..+-.
T Consensus       143 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~  221 (474)
T 4abn_A          143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGN  221 (474)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            77888899999999999999753  6778889999999999         99999999999987753 234568888888


Q ss_pred             HHhcC--------CCchhHHHHHHHHHHhCCC--cchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHH
Q 045063           85 ACSAL--------PAPERGKQVHALMIKGGTD--SEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSS  151 (175)
Q Consensus        85 ~~~~~--------~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~  151 (175)
                      ++...        |++++|...+++..+....  -+...|..+..+|.+.|++++|.+.|+...  .| +...|..+-..
T Consensus       222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~  301 (474)
T 4abn_A          222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL  301 (474)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88888        8999999999999985311  367899999999999999999999999876  34 55678888899


Q ss_pred             HHhcCChHHHHHHHHHH
Q 045063          152 FLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       152 ~~~~g~~~~a~~~~~~m  168 (175)
                      +...|++++|.+.+.++
T Consensus       302 ~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          302 LEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999998765544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.74  E-value=1.3e-07  Score=76.81  Aligned_cols=147  Identities=8%  Similarity=-0.097  Sum_probs=121.2

Q ss_pred             cCCCChhHHHHHhhhcc-----------CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063           21 ALPKRYVYTHQVFDEIS-----------HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL   89 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~   89 (175)
                      ...|++++|.+.|++..           ..+...|..+-.++.+.|++++|.+.|++..+.. +-+...|..+-.++.+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            77899999999999876           2366778888899999999999999999987652 23456888888889999


Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      |++++|.+.|++..+.. +-+...|..+-.+|.+.|++++ .+.|+...  .| +...|..+-.++.+.|+.++|.+.|+
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999988753 2356788899999999999999 88888865  34 56788889999999999999999998


Q ss_pred             HHHh
Q 045063          167 AMTR  170 (175)
Q Consensus       167 ~m~~  170 (175)
                      +..+
T Consensus       559 ~al~  562 (681)
T 2pzi_A          559 EVPP  562 (681)
T ss_dssp             TSCT
T ss_pred             hhcc
Confidence            7654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.73  E-value=3e-07  Score=60.37  Aligned_cols=137  Identities=4%  Similarity=-0.074  Sum_probs=106.4

Q ss_pred             hhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           19 ADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      ++...|+++.|...+......   +...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.++.+.|++++|
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            455678999999999887643   45556678899999999999999999987652 23456899999999999999999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHH-HHhcc--CC-CchhHHHHHHHHHhcCC
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEA-FKEIE--FK-DVVTWNALLSSFLRHGL  157 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~--~~-~~~~~~~li~~~~~~g~  157 (175)
                      ...|++..+.. +-+...|..+...|.+.|++++|.+. ++...  .| +..+|+..-..+.+.|+
T Consensus        85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999998853 23567899999999999999876655 45543  44 66677776666666664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.72  E-value=6.2e-07  Score=62.62  Aligned_cols=155  Identities=7%  Similarity=0.062  Sum_probs=115.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CCH-hhHHHHHHHHh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GD----LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LTA-YTFTPVLGACS   87 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~~-~t~~~ll~~~~   87 (175)
                      +-..+.+.|+++.|...|+++..  |+    ...+..+..+|.+.|++++|.+.|++..+.... +.. ..+-.+-.++.
T Consensus        10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~   89 (225)
T 2yhc_A           10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM   89 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence            44567788999999999999863  43    246777889999999999999999998765322 221 13333333332


Q ss_pred             ------------------cCCCchhHHHHHHHHHHhCCCcch-HHH-----------------HHHHHHHHhcCChHHHH
Q 045063           88 ------------------ALPAPERGKQVHALMIKGGTDSEP-VVK-----------------TALMDMYSKYGLLGESV  131 (175)
Q Consensus        88 ------------------~~~~~~~a~~~~~~m~~~~~~~~~-~~~-----------------~~li~~~~~~g~~~~a~  131 (175)
                                        ..|+.++|...++..++.  .|+. ..+                 -.+...|.+.|++++|.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~  167 (225)
T 2yhc_A           90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV  167 (225)
T ss_dssp             HHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence                              357889999999999874  2432 222                 24456788999999999


Q ss_pred             HHHHhcc--CCCc----hhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 045063          132 EAFKEIE--FKDV----VTWNALLSSFLRHGLAKEAFGVFQAMTRER  172 (175)
Q Consensus       132 ~~~~~m~--~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  172 (175)
                      ..|+.+.  .|+.    ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus       168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            9999987  3433    458888999999999999999999887754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.72  E-value=9.7e-07  Score=64.85  Aligned_cols=140  Identities=9%  Similarity=-0.026  Sum_probs=107.4

Q ss_pred             HHHHhhhcc---CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063           29 THQVFDEIS---HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        29 a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  104 (175)
                      |...|++..   .++..++..+-.++...|++++|++.+.+-...+..+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            455566543   2445556688899999999999999999986665433 445888889999999999999999999987


Q ss_pred             hCCCc-----chHHHHHHHHHHH--hcC--ChHHHHHHHHhccCCCc--hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          105 GGTDS-----EPVVKTALMDMYS--KYG--LLGESVEAFKEIEFKDV--VTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       105 ~~~~~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .  .|     +..+...+..++.  ..|  ++.+|..+|+++.+...  .+-..++.++.+.|++++|.+.++.+.+
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4  56     4667777777743  334  99999999999975433  3445566689999999999999987654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.71  E-value=1.8e-07  Score=67.96  Aligned_cols=151  Identities=7%  Similarity=-0.097  Sum_probs=119.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh-HHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT-FTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t-~~~ll~~~~~~~~   91 (175)
                      +-..+.+.|+++.|...|++..+  | +...+..+...+.+.|++++|...+++....  .|+... .......+.+.+.
T Consensus       123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~  200 (287)
T 3qou_A          123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAA  200 (287)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcc
Confidence            55567788999999999998753  4 6677888999999999999999999988554  344432 2222333556777


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC---chhHHHHHHHHHhcCChHHHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KD---VVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      .+.+.+.+++..... +.+...+..+...|...|++++|.+.+....+  |+   ...+..+...|...|+.++|...++
T Consensus       201 ~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r  279 (287)
T 3qou_A          201 DTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR  279 (287)
T ss_dssp             SCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence            888888888888753 34677999999999999999999999999873  42   5689999999999999999999888


Q ss_pred             HHH
Q 045063          167 AMT  169 (175)
Q Consensus       167 ~m~  169 (175)
                      +-.
T Consensus       280 ~al  282 (287)
T 3qou_A          280 RQL  282 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.69  E-value=1e-06  Score=57.78  Aligned_cols=127  Identities=7%  Similarity=-0.050  Sum_probs=98.0

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM  120 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  120 (175)
                      ...|..+-..+.+.|++++|...|.+..+.. +.+..++..+-.++.+.|++++|...+.+..+.. +.+...|..+..+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3457778888889999999999999987652 2356678888888889999999999999888753 3456788888899


Q ss_pred             HHhcCChHHHHHHHHhccC--C-CchhHHHHHHH--HHhcCChHHHHHHHHHHH
Q 045063          121 YSKYGLLGESVEAFKEIEF--K-DVVTWNALLSS--FLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       121 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~--~~~~g~~~~a~~~~~~m~  169 (175)
                      |...|++++|.+.|+...+  | +...+..+..+  +.+.|++++|...+.+..
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            9999999999999988762  3 44455443333  778899999998887654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.68  E-value=5.8e-07  Score=70.52  Aligned_cols=146  Identities=4%  Similarity=-0.046  Sum_probs=116.5

Q ss_pred             CCChh-------HHHHHhhhccC---C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH--hhHHHHHHHHhcC
Q 045063           23 PKRYV-------YTHQVFDEISH---G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA--YTFTPVLGACSAL   89 (175)
Q Consensus        23 ~~~~~-------~a~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~t~~~ll~~~~~~   89 (175)
                      .|+++       .|..+|++..+   | +...|..+...+.+.|++++|.++|++..+.  .|+.  ..|........+.
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~  369 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA  369 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence            68887       89999998753   4 5778999999999999999999999999874  4542  4788888888899


Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHH-HHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMD-MYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVF  165 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~  165 (175)
                      |+.++|.++|++..+.. +.+...|-.... .|...|+.++|..+|+...  .| +...|..++..+.+.|+.++|..+|
T Consensus       370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~  448 (530)
T 2ooe_A          370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF  448 (530)
T ss_dssp             HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence            99999999999998742 122233322221 2346899999999999875  34 6788999999999999999999999


Q ss_pred             HHHHhc
Q 045063          166 QAMTRE  171 (175)
Q Consensus       166 ~~m~~~  171 (175)
                      ++....
T Consensus       449 ~~al~~  454 (530)
T 2ooe_A          449 ERVLTS  454 (530)
T ss_dssp             HHHHHS
T ss_pred             HHHHhc
Confidence            998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.68  E-value=1.9e-07  Score=67.97  Aligned_cols=155  Identities=8%  Similarity=-0.142  Sum_probs=118.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-------C--CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-------G--DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~   81 (175)
                      ....|...|++++|...|++..+       +  ...+|+.+-.+|.+.|++++|...|.+..+.    |-... ..+++.
T Consensus        43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  122 (292)
T 1qqe_A           43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (292)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45567778888888888887642       1  1457899999999999999999999987643    21111 347888


Q ss_pred             HHHHHhcC-CCchhHHHHHHHHHHhCC---Cc-c-hHHHHHHHHHHHhcCChHHHHHHHHhccC--CCc-h-------hH
Q 045063           82 VLGACSAL-PAPERGKQVHALMIKGGT---DS-E-PVVKTALMDMYSKYGLLGESVEAFKEIEF--KDV-V-------TW  145 (175)
Q Consensus        82 ll~~~~~~-~~~~~a~~~~~~m~~~~~---~~-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~-------~~  145 (175)
                      +-..+... |++++|...+++..+...   .+ . ..++..+...|.+.|++++|...|+...+  |+. .       .|
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  202 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            88889986 999999999999875311   11 1 35788899999999999999999998763  221 1       46


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          146 NALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       146 ~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+..++...|+.++|...|++..+
T Consensus       203 ~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          203 LKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7777889999999999999988654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.66  E-value=1.2e-06  Score=54.31  Aligned_cols=110  Identities=9%  Similarity=-0.016  Sum_probs=80.3

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM  120 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  120 (175)
                      ...|..+...+.+.|++++|.+.|.++.+.. +.+..++..+..++.+.|++++|...+++..+.. +.+...+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4567777888888888888888888887652 2345677788888888888888888888887653 3456678888888


Q ss_pred             HHhcCChHHHHHHHHhccC--C-CchhHHHHHHHH
Q 045063          121 YSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSF  152 (175)
Q Consensus       121 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~  152 (175)
                      |...|++++|...|+...+  | +...+..+-..+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            8888888888888887652  3 333444444333

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.64  E-value=9.3e-07  Score=67.03  Aligned_cols=130  Identities=8%  Similarity=-0.079  Sum_probs=112.5

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-chhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-PERGKQVHALMIKGGTDSEPVVKTALM  118 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li  118 (175)
                      +...|+.+-..+.+.|++++|++.|.+..+.. +-+...|+.+-.++.+.|+ +++|...+++.++.. +-+...|..+-
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            34568889999999999999999999987652 2345689999999999996 999999999999864 33677999999


Q ss_pred             HHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          119 DMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .+|.+.|++++|...|+...  .| +...|..+-.++.+.|++++|+..|++.++.
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            99999999999999999987  33 7788999999999999999999999998764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.63  E-value=3.9e-07  Score=66.98  Aligned_cols=150  Identities=8%  Similarity=-0.040  Sum_probs=113.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-----CHhhHHHHHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-----TAYTFTPVLGA   85 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-----~~~t~~~ll~~   85 (175)
                      +-.++...|++++|.+++.+...     .+...+...+..+.+.|+.+.|.+.+++|.+.  .|     +..+...+..+
T Consensus       106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAES  183 (310)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHH
Confidence            66777888999999999998733     25667889999999999999999999999664  45     35666666666


Q ss_pred             Hhc----CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC------------C-CchhHHHH
Q 045063           86 CSA----LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF------------K-DVVTWNAL  148 (175)
Q Consensus        86 ~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------~-~~~~~~~l  148 (175)
                      +..    .++.+.|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+            | |..+.-.+
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~  261 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ  261 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence            332    34899999999998764  35533444455589999999999999986543            3 56667555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhc
Q 045063          149 LSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       149 i~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      |......|+  +|.+++.++.+.
T Consensus       262 i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          262 ITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHHHhCh--HHHHHHHHHHHh
Confidence            655666776  888998888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.63  E-value=3.9e-07  Score=68.43  Aligned_cols=153  Identities=7%  Similarity=-0.081  Sum_probs=120.5

Q ss_pred             hhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CC---CCC-HhhHHHH
Q 045063           18 IADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST--CL---NLT-AYTFTPV   82 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~---~~~-~~t~~~l   82 (175)
                      ..+...|+++.|...|++..+     +    ...+|..+-.+|...|+++.|...+.+..+.  ..   .+. ..+++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            356778999999999998743     2    3456889999999999999999999997653  11   111 3478888


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC----chhHHHH
Q 045063           83 LGACSALPAPERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF-----KD----VVTWNAL  148 (175)
Q Consensus        83 l~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~l  148 (175)
                      -.++...|++++|...+.+..+.    +-.+. ..++..+-..|...|++++|.+.++...+     .+    ..++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            89999999999999999988753    11111 24788899999999999999999988753     22    3468888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 045063          149 LSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       149 i~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      -..|.+.|+.++|...+++..+
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~  292 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMA  292 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8999999999999999988654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.63  E-value=5.3e-07  Score=67.70  Aligned_cols=155  Identities=8%  Similarity=-0.052  Sum_probs=122.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc----CC-CCCHhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST----CL-NLTAYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~-~~~~~t~~~   81 (175)
                      +-.+|...|+++.|...|++..+     ++    ..++..+-.+|.+.|++++|.+.|.+..+.    +. +....++..
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  269 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL  269 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            66788889999999999998642     11    246888999999999999999999998762    33 233458889


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHh----CCCcchHHHHHHHHHHHhcCC---hHHHHHHHHhccCC--CchhHHHHHHHH
Q 045063           82 VLGACSALPAPERGKQVHALMIKG----GTDSEPVVKTALMDMYSKYGL---LGESVEAFKEIEFK--DVVTWNALLSSF  152 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~--~~~~~~~li~~~  152 (175)
                      +-.++.+.|++++|...+++..+.    +-+.....+..+-..|...|+   +++|...++....+  ....+..+-..|
T Consensus       270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y  349 (383)
T 3ulq_A          270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY  349 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            999999999999999999988753    122223346778888889999   88899999887533  234677888899


Q ss_pred             HhcCChHHHHHHHHHHHh
Q 045063          153 LRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       153 ~~~g~~~~a~~~~~~m~~  170 (175)
                      .+.|++++|...|++..+
T Consensus       350 ~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          350 HERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            999999999999998764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.60  E-value=5.2e-07  Score=62.34  Aligned_cols=152  Identities=8%  Similarity=-0.032  Sum_probs=114.8

Q ss_pred             hhhcCCCChhHHHHHhhhccC--C-CchhHHH----------------HHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh
Q 045063           18 IADALPKRYVYTHQVFDEISH--G-DLSSLNS----------------QLFSYTRSRNFPATWALFCYMHSTCLNLTAYT   78 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t   78 (175)
                      ..+.+.|+++.|...|++...  | +...|..                +-.+|.+.|++++|...|++..+.. +-+...
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~   90 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDC   90 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHH
Confidence            345678999999999999764  3 3445666                8899999999999999999987652 234568


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC--hHHHHHHHHhccCCCchh--HHHHHHHHHh
Q 045063           79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL--LGESVEAFKEIEFKDVVT--WNALLSSFLR  154 (175)
Q Consensus        79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~--~~~li~~~~~  154 (175)
                      +..+-.++...|++++|...|++..+.. +-+...|..+-..|...|.  .+.+...++....++...  |...-.++..
T Consensus        91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~  169 (208)
T 3urz_A           91 LEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF  169 (208)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            8899999999999999999999999853 3356788888888866554  455677777776665443  3334455667


Q ss_pred             cCChHHHHHHHHHHHhc
Q 045063          155 HGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~~~  171 (175)
                      .|++++|...|++..+.
T Consensus       170 ~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          170 TTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHTHHHHHHHHHHHTTT
T ss_pred             ccCHHHHHHHHHHHHHh
Confidence            89999999999987653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.59  E-value=1.9e-06  Score=53.84  Aligned_cols=117  Identities=15%  Similarity=-0.031  Sum_probs=91.0

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +...+..+...+...|++++|...|.+..+.. +.+...+..+-.++...|++++|...+....+.. +.+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            44567778888888999999999999887652 2356678888888888999999999999888753 335678888888


Q ss_pred             HHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCCh
Q 045063          120 MYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLA  158 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~  158 (175)
                      .|.+.|++++|...|+...  .| +...+..+...+.+.|+.
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999988865  33 556777777777777654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.58  E-value=3.3e-06  Score=53.04  Aligned_cols=115  Identities=4%  Similarity=-0.104  Sum_probs=90.1

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +...|..+...+.+.|++++|...|++..+.. +.+...+..+-.++...|++++|...+++..+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            45568888889999999999999999986652 2356688888888899999999999999988753 345678888899


Q ss_pred             HHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcC
Q 045063          120 MYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHG  156 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g  156 (175)
                      +|.+.|++++|.+.|+...+  | +...+..+-..+.+.|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999999999999988753  3 4556666666666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.54  E-value=4.2e-07  Score=62.11  Aligned_cols=155  Identities=8%  Similarity=-0.049  Sum_probs=105.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC--------------Hh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT--------------AY   77 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~--------------~~   77 (175)
                      ........|+++.+.+.|+.-..   .....+..+-..+.+.|++++|...|.+..+... .|+              ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            55566677888888888775443   2455678888899999999999999999876421 121              26


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~  154 (175)
                      .+..+-.++.+.|++++|...++...+.. +.+...+..+..+|...|++++|.+.|+...  .| +...+..+-.++..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            78888888999999999999999998863 3466789999999999999999999999875  34 56678888888888


Q ss_pred             cCChHHHH-HHHHHHHhc
Q 045063          155 HGLAKEAF-GVFQAMTRE  171 (175)
Q Consensus       155 ~g~~~~a~-~~~~~m~~~  171 (175)
                      .++..++. ..|..|...
T Consensus       169 ~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            88777776 556665543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.54  E-value=4.6e-06  Score=54.95  Aligned_cols=92  Identities=10%  Similarity=-0.068  Sum_probs=56.1

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~  154 (175)
                      .+..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|.+.|+...  .| +...|..+-.+|.+
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            45555555666666666666666666542 2345566666666666666666666666654  23 45566666666666


Q ss_pred             cCChHHHHHHHHHHHh
Q 045063          155 HGLAKEAFGVFQAMTR  170 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~~  170 (175)
                      .|++++|...|++..+
T Consensus       117 lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQ  132 (151)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666666544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.51  E-value=2.6e-06  Score=63.26  Aligned_cols=146  Identities=7%  Similarity=-0.043  Sum_probs=116.3

Q ss_pred             CChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--------------HhhHHHHHHHH
Q 045063           24 KRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--------------AYTFTPVLGAC   86 (175)
Q Consensus        24 ~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--------------~~t~~~ll~~~   86 (175)
                      ++++.|...|+...+  | +...|..+-..|.+.|++++|...|.+..+......              ...|..+-.++
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555554432  2 466788899999999999999999999876633222              47899999999


Q ss_pred             hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHH-H
Q 045063           87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEA-F  162 (175)
Q Consensus        87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a-~  162 (175)
                      .+.|++++|...+++..+.. +.+...|..+-.+|...|++++|...|+...  .| +...|..+-..+.+.|+.++| .
T Consensus       207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999864 3467799999999999999999999999876  34 667888899999999999988 4


Q ss_pred             HHHHHHHh
Q 045063          163 GVFQAMTR  170 (175)
Q Consensus       163 ~~~~~m~~  170 (175)
                      ..++.|..
T Consensus       286 ~~~~~~~~  293 (336)
T 1p5q_A          286 KLYANMFE  293 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            56777643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.50  E-value=2e-07  Score=70.19  Aligned_cols=155  Identities=12%  Similarity=-0.006  Sum_probs=108.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CC-c----hhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCC-CHhhHHHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GD-L----SSLNSQLFSYTRSRNFPATWALFCYMHST----CLNL-TAYTFTPVL   83 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~-~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~-~~~t~~~ll   83 (175)
                      +-..+...|++++|...|++..+  |+ .    ..|..+..+|...|++++|...|++..+.    +-.| ...++..+-
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  133 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG  133 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            44566778899999999888653  32 2    46788888888889999999988887543    2122 234777778


Q ss_pred             HHHhcCCCchhHHHHHHHHHHh----CCCc-chHHHHHHHHHHHhcCC-----------------hHHHHHHHHhccC--
Q 045063           84 GACSALPAPERGKQVHALMIKG----GTDS-EPVVKTALMDMYSKYGL-----------------LGESVEAFKEIEF--  139 (175)
Q Consensus        84 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~--  139 (175)
                      ..+...|++++|...+++..+.    +-.+ ....+..+...|...|+                 +++|.+.+++..+  
T Consensus       134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            8888888888888888877643    1112 23477778888888888                 8888777776531  


Q ss_pred             -----C--CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          140 -----K--DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       140 -----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                           +  ....|..+-..|...|++++|...+++..+
T Consensus       214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (411)
T 4a1s_A          214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR  251 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence                 1  233667777777888888888887777643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.48  E-value=3.7e-06  Score=52.02  Aligned_cols=95  Identities=15%  Similarity=0.135  Sum_probs=82.5

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHH
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSF  152 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~  152 (175)
                      ...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...++.+.+   .+...|..+...|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            4578888889999999999999999998763 34677899999999999999999999998762   3677899999999


Q ss_pred             HhcCChHHHHHHHHHHHhc
Q 045063          153 LRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       153 ~~~g~~~~a~~~~~~m~~~  171 (175)
                      ...|++++|...|++..+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            9999999999999998754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.48  E-value=3e-06  Score=61.97  Aligned_cols=153  Identities=5%  Similarity=-0.083  Sum_probs=115.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCC--HhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST---CLNLT--AYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~--~~t~~~   81 (175)
                      ....|...|+++.|...|.+..+     .+    ..+|+.+..+|.+.|++++|...|.+..+.   .-.+.  ..++..
T Consensus        42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  121 (307)
T 2ifu_A           42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR  121 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45567777888888888877542     11    447888999999999999999999987543   11122  347778


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHhCC---Cc--chHHHHHHHHHHHhcCChHHHHHHHHhccCC-----C----chhHHH
Q 045063           82 VLGACSALPAPERGKQVHALMIKGGT---DS--EPVVKTALMDMYSKYGLLGESVEAFKEIEFK-----D----VVTWNA  147 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~----~~~~~~  147 (175)
                      +-..+.+ |++++|...+++..+...   .+  ...++..+...|.+.|++++|.+.|+...+-     +    ...|..
T Consensus       122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (307)
T 2ifu_A          122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA  200 (307)
T ss_dssp             HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            8888888 999999999998875311   11  1457888999999999999999999987631     1    125666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHH
Q 045063          148 LLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       148 li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +..++...|+.++|...|++..
T Consensus       201 ~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          201 QVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHh
Confidence            7777888899999999999865

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.47  E-value=2e-06  Score=57.43  Aligned_cols=119  Identities=6%  Similarity=-0.048  Sum_probs=92.2

Q ss_pred             hhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH-HhcCCCc-
Q 045063           18 IADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA-CSALPAP-   92 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~-~~~~~~~-   92 (175)
                      ..+...|+++.|...|++...   .+...|..+-.+|...|++++|...|.+..+.. +.+...+..+-.+ +.+.|++ 
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence            345678899999999987642   366788999999999999999999999987652 2345577777777 6788998 


Q ss_pred             -hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           93 -ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        93 -~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                       ++|...++...+.. +.+...+..+...|...|++++|...|+...
T Consensus        97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A           97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             99999999998763 3356788889999999999999999999876

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.46  E-value=2.3e-06  Score=57.16  Aligned_cols=118  Identities=8%  Similarity=-0.048  Sum_probs=94.6

Q ss_pred             HhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH-HHhcCCh--H
Q 045063           52 TRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM-YSKYGLL--G  128 (175)
Q Consensus        52 ~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~  128 (175)
                      ...|++++|...|.+..+.. +.+...|..+-.++...|++++|...+++..+.. +.+...+..+..+ |...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            46789999999999987652 3456688899999999999999999999998753 3356788888888 8899998  9


Q ss_pred             HHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          129 ESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       129 ~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +|...++...  .| +...|..+...|...|++++|...|++..+.
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999999876  34 5677888899999999999999999998764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.46  E-value=1.1e-05  Score=58.48  Aligned_cols=153  Identities=7%  Similarity=-0.062  Sum_probs=113.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CC-------chhHHHHHHHHHhCCCcchHHHHHHHHHhcC---CCCC--HhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GD-------LSSLNSQLFSYTRSRNFPATWALFCYMHSTC---LNLT--AYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~-------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~---~~~~--~~t~~~   81 (175)
                      .+..+...|+++.|.+.+.+..+  +.       ...+..+...+...|++++|+..|.+..+..   ..+.  ..+++.
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            46667788999999998876532  11       1224456667778899999999999987532   1222  348888


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHH---hC-CCc--chHHHHHHHHHHHhcCChHHHHHHHHhccC--C---C----chhHH
Q 045063           82 VLGACSALPAPERGKQVHALMIK---GG-TDS--EPVVKTALMDMYSKYGLLGESVEAFKEIEF--K---D----VVTWN  146 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~---~----~~~~~  146 (175)
                      +-..+...|++++|...+++..+   .. -.+  ...++..+...|.+.|++++|.+.++...+  +   +    ..+|.
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~  240 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            89999999999999999998873   21 111  125889999999999999999999987642  1   1    45688


Q ss_pred             HHHHHHHhcCChHHH-HHHHHHH
Q 045063          147 ALLSSFLRHGLAKEA-FGVFQAM  168 (175)
Q Consensus       147 ~li~~~~~~g~~~~a-~~~~~~m  168 (175)
                      .+-..|.+.|+.++| ...+++-
T Consensus       241 ~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          241 QRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHH
Confidence            888899999999999 7767664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.45  E-value=2.3e-06  Score=62.13  Aligned_cols=154  Identities=6%  Similarity=-0.117  Sum_probs=114.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----CC----chhHHHHHHHHHhC-CCcchHHHHHHHHHhcC----CCCC-HhhHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----GD----LSSLNSQLFSYTRS-RNFPATWALFCYMHSTC----LNLT-AYTFT   80 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~----~~~~-~~t~~   80 (175)
                      +-.+|.+.|++++|...|++..+     .+    ..+|+.+-..|.+. |++++|+..|.+..+..    -.+. ..++.
T Consensus        83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~  162 (292)
T 1qqe_A           83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            77788899999999999998653     12    45788999999996 99999999999986531    1111 34688


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhCCCcch------HHHHHHHHHHHhcCChHHHHHHHHhccC--CCc------hhHH
Q 045063           81 PVLGACSALPAPERGKQVHALMIKGGTDSEP------VVKTALMDMYSKYGLLGESVEAFKEIEF--KDV------VTWN  146 (175)
Q Consensus        81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~------~~~~  146 (175)
                      .+-..+.+.|++++|...+++..+.......      ..|..+..+|...|++++|...|+...+  |+.      ..+.
T Consensus       163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~  242 (292)
T 1qqe_A          163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK  242 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence            8889999999999999999999875432222      1577888899999999999999999864  321      1234


Q ss_pred             HHHHHHH--hcCChHHHHHHHHHHH
Q 045063          147 ALLSSFL--RHGLAKEAFGVFQAMT  169 (175)
Q Consensus       147 ~li~~~~--~~g~~~~a~~~~~~m~  169 (175)
                      .++.+|.  ..+++++|+..|+++.
T Consensus       243 ~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          243 SLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHcCCHHHHHHHHHHhccCC
Confidence            4556554  3467888888876653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.44  E-value=3.3e-06  Score=63.35  Aligned_cols=152  Identities=11%  Similarity=0.050  Sum_probs=119.8

Q ss_pred             hhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CC---CC-CHhhHHHHH
Q 045063           19 ADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST--CL---NL-TAYTFTPVL   83 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~---~~-~~~t~~~ll   83 (175)
                      .+...|+++.|...|++..+     +    ....+..+-.+|...|+++.|...+.+..+.  ..   .+ ...+++.+-
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            34678999999999998643     2    2446888999999999999999999997643  11   12 234788888


Q ss_pred             HHHhcCCCchhHHHHHHHHHHh----CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-----C---CchhHHHHHH
Q 045063           84 GACSALPAPERGKQVHALMIKG----GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-----K---DVVTWNALLS  150 (175)
Q Consensus        84 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~---~~~~~~~li~  150 (175)
                      .++...|++++|...+.+..+.    +-.+ ...++..+-..|...|++++|.+.++...+     .   ...++..+-.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            9999999999999999988752    1111 234788899999999999999999988763     2   3456778888


Q ss_pred             HHHhcCChHHHHHHHHHHHh
Q 045063          151 SFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       151 ~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .|.+.|+.++|...+++..+
T Consensus       270 ~~~~~g~~~~A~~~~~~al~  289 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLD  289 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999998765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.43  E-value=1.5e-05  Score=56.48  Aligned_cols=133  Identities=11%  Similarity=-0.008  Sum_probs=104.0

Q ss_pred             CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC-C-cchHHH
Q 045063           39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LT-AYTFTPVLGACSALPAPERGKQVHALMIKGGT-D-SEPVVK  114 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~-~~~~~~  114 (175)
                      .+...+-..-..+.+.|++++|...|.+..+.... |. ...+..+-.++.+.|++++|...++...+... . .....+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            35556667778888999999999999999775321 11 45788888899999999999999999998532 1 224567


Q ss_pred             HHHHHHHHh--------cCChHHHHHHHHhcc--CCC-chhH-----------------HHHHHHHHhcCChHHHHHHHH
Q 045063          115 TALMDMYSK--------YGLLGESVEAFKEIE--FKD-VVTW-----------------NALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus       115 ~~li~~~~~--------~g~~~~a~~~~~~m~--~~~-~~~~-----------------~~li~~~~~~g~~~~a~~~~~  166 (175)
                      ..+..+|.+        .|++++|...|+...  .|+ ...+                 ..+-..|.+.|++++|...|+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            778888888        999999999999987  343 3344                 445777899999999999999


Q ss_pred             HHHhc
Q 045063          167 AMTRE  171 (175)
Q Consensus       167 ~m~~~  171 (175)
                      +..+.
T Consensus       173 ~~l~~  177 (261)
T 3qky_A          173 AVFDA  177 (261)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.43  E-value=3.3e-06  Score=63.32  Aligned_cols=155  Identities=11%  Similarity=-0.035  Sum_probs=120.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCCHhhHHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLTAYTFTPV   82 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~t~~~l   82 (175)
                      +-.+|...|+++.|.+.|++..+     +    ...+++.+-.+|.+.|++++|.+.|.+..+.    +-+....++..+
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  267 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence            67788899999999999988643     1    2346888899999999999999999998761    222235688888


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHhC----CCcchHHHHHHHHHHHhcCC---hHHHHHHHHhccCC--CchhHHHHHHHHH
Q 045063           83 LGACSALPAPERGKQVHALMIKGG----TDSEPVVKTALMDMYSKYGL---LGESVEAFKEIEFK--DVVTWNALLSSFL  153 (175)
Q Consensus        83 l~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~--~~~~~~~li~~~~  153 (175)
                      -..+.+.|++++|...+++..+..    -+.....+..+-..|...|+   +.+|...++.....  ....+..+-..|.
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~  347 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE  347 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            999999999999999999988642    22234466777777888888   88888888875432  2335677888899


Q ss_pred             hcCChHHHHHHHHHHHh
Q 045063          154 RHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       154 ~~g~~~~a~~~~~~m~~  170 (175)
                      ..|++++|...|++..+
T Consensus       348 ~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          348 SSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            99999999999998754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.42  E-value=5.8e-06  Score=52.54  Aligned_cols=95  Identities=7%  Similarity=-0.023  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      ..+...-..|.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|...+++.++.. +.+...|..+-.+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            346666677777777777777777765542 2345567777777777777777777777777643 23455777777777


Q ss_pred             HhcCChHHHHHHHHhcc
Q 045063          122 SKYGLLGESVEAFKEIE  138 (175)
Q Consensus       122 ~~~g~~~~a~~~~~~m~  138 (175)
                      ...|++++|.+.|+...
T Consensus        92 ~~~~~~~~A~~~~~~al  108 (126)
T 4gco_A           92 VAMREWSKAQRAYEDAL  108 (126)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            77777777777777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.41  E-value=1.4e-06  Score=63.10  Aligned_cols=84  Identities=7%  Similarity=-0.089  Sum_probs=38.0

Q ss_pred             hcCCCChhHHHHHhhhccC--C-C----chhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHHHHh
Q 045063           20 DALPKRYVYTHQVFDEISH--G-D----LSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLGACS   87 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~~~~   87 (175)
                      +...|+++.|...|++..+  | +    ...|..+...+...|++++|.+.+.+..+.    +-.|. ..++..+-..+.
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            3444555555555555421  1 1    233445555555555555555555543321    11111 224444444555


Q ss_pred             cCCCchhHHHHHHHHH
Q 045063           88 ALPAPERGKQVHALMI  103 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~  103 (175)
                      ..|++++|...+++..
T Consensus        95 ~~g~~~~A~~~~~~al  110 (338)
T 3ro2_A           95 VLGNFDEAIVCCQRHL  110 (338)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHH
Confidence            5555555555555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.40  E-value=6.2e-07  Score=67.53  Aligned_cols=155  Identities=9%  Similarity=-0.062  Sum_probs=120.6

Q ss_pred             hhhhhcCCCC-----------------hhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063           16 ISIADALPKR-----------------YVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHS   69 (175)
Q Consensus        16 ll~~~~~~~~-----------------~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~   69 (175)
                      +-..|...|+                 ++.|...|++..+     .    ....+..+-..|...|++++|...|.+..+
T Consensus       172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (411)
T 4a1s_A          172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR  251 (411)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6667777888                 8888888877532     1    234688889999999999999999999765


Q ss_pred             cCC-CCC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--C---cchHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063           70 TCL-NLT----AYTFTPVLGACSALPAPERGKQVHALMIKGGT--D---SEPVVKTALMDMYSKYGLLGESVEAFKEIEF  139 (175)
Q Consensus        70 ~~~-~~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  139 (175)
                      ... .++    ..++..+-..+...|++++|...+++..+...  .   ....++..+...|...|++++|.+.++....
T Consensus       252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            311 111    23788888999999999999999998875311  1   1246788899999999999999999998752


Q ss_pred             C---------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          140 K---------DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       140 ~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      -         ...+|..+...|.+.|+.++|.+.|++..+
T Consensus       332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            1         234788889999999999999999998754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.39  E-value=1.2e-05  Score=51.07  Aligned_cols=98  Identities=4%  Similarity=-0.103  Sum_probs=69.9

Q ss_pred             CCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHH
Q 045063           72 LNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNA  147 (175)
Q Consensus        72 ~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~  147 (175)
                      +.|+.. .+...-+.+.+.|++++|...|++.++.. +.+...|..+-.+|.+.|++++|...|+...  .| +...|..
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            444443 56667777778888888888888777643 3456677777788888888888888777765  23 5567777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHh
Q 045063          148 LLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       148 li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +-.+|...|++++|.+.|++..+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            77778888888888888777654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.38  E-value=1.1e-06  Score=65.73  Aligned_cols=155  Identities=8%  Similarity=-0.072  Sum_probs=119.4

Q ss_pred             hhhhhcCCCC--------------------hhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHH
Q 045063           16 ISIADALPKR--------------------YVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCY   66 (175)
Q Consensus        16 ll~~~~~~~~--------------------~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~   66 (175)
                      +-..|...|+                    ++.|...|++...     +    ....+..+-..|...|++++|...|.+
T Consensus       133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (406)
T 3sf4_A          133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ  212 (406)
T ss_dssp             HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred             HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5566777788                    8888888876532     1    244688889999999999999999999


Q ss_pred             HHhcC-CCCC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           67 MHSTC-LNLT----AYTFTPVLGACSALPAPERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        67 m~~~~-~~~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      ..+.. -.++    ..++..+-..+...|++++|...+++..+.    +-.+. ..++..+...|...|++++|.+.++.
T Consensus       213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  292 (406)
T 3sf4_A          213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK  292 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            86431 1112    237888888999999999999999988743    11111 45788899999999999999999988


Q ss_pred             ccC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          137 IEF-----KD----VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       137 m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+     .+    ..+|..+-..|.+.|++++|...+++..+
T Consensus       293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            752     12    45788888999999999999999988653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.38  E-value=1.5e-06  Score=70.47  Aligned_cols=139  Identities=8%  Similarity=-0.075  Sum_probs=111.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-.++.+.|++++|...|++..+   .+...|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++
T Consensus       439 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~  517 (681)
T 2pzi_A          439 EVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNT  517 (681)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCh
Confidence            56678889999999999999764   367789999999999999999999999987652 22455788888899999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCC
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGL  157 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~  157 (175)
                      ++ .+.|++..+.. +.+...|..+-.+|.+.|++++|.+.|+...+-   +...|..+..++...|+
T Consensus       518 ~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          518 DE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             CT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99 99999998754 335678999999999999999999999998743   34567667677655444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.38  E-value=6.5e-07  Score=64.86  Aligned_cols=145  Identities=10%  Similarity=-0.049  Sum_probs=112.3

Q ss_pred             hhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCC-CHhhHHHHHHHHhcCCC
Q 045063           26 YVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNL-TAYTFTPVLGACSALPA   91 (175)
Q Consensus        26 ~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~-~~~t~~~ll~~~~~~~~   91 (175)
                      ++.|...+++...     +    ....+..+...+...|++++|.+.+.+..+.    +..+ ...++..+-..+...|+
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            8888888877532     1    2446888889999999999999999997643    1111 12378888888999999


Q ss_pred             chhHHHHHHHHHHhC----CCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC----chhHHHHHHHHHhcCC
Q 045063           92 PERGKQVHALMIKGG----TDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF-----KD----VVTWNALLSSFLRHGL  157 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~  157 (175)
                      +++|...+++..+..    -.+. ..++..+...|...|++++|...++...+     .+    ..+|..+-..|.+.|+
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN  318 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            999999999887431    1111 45788889999999999999999988652     12    4478888999999999


Q ss_pred             hHHHHHHHHHHHh
Q 045063          158 AKEAFGVFQAMTR  170 (175)
Q Consensus       158 ~~~a~~~~~~m~~  170 (175)
                      +++|...+++..+
T Consensus       319 ~~~A~~~~~~a~~  331 (338)
T 3ro2_A          319 HDQAMHFAEKHLE  331 (338)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999998765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.38  E-value=6.4e-06  Score=59.74  Aligned_cols=147  Identities=12%  Similarity=0.040  Sum_probs=111.9

Q ss_pred             CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHH
Q 045063           22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHAL  101 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~  101 (175)
                      .....+...+.++.....+...+-.+-..+.+.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...+++
T Consensus        98 g~~~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~  176 (287)
T 3qou_A           98 GPQPEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXT  176 (287)
T ss_dssp             SCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            33445556666666554556667778888899999999999999987652 23455888888999999999999999998


Q ss_pred             HHHhCCCcchHHH-HHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          102 MIKGGTDSEPVVK-TALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       102 m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      ....  .|+.... ......+.+.++.++|.+.++...  .| +...+..+-..+...|++++|...|++..+.
T Consensus       177 ~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          177 IPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             SCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Cchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            8764  3554433 223334667888888888888765  44 6778999999999999999999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.37  E-value=6e-06  Score=53.97  Aligned_cols=120  Identities=8%  Similarity=-0.041  Sum_probs=96.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+...|+++.|...|++...   .+...|..+..++.+.|++++|...|.+..+.. +.+...+..+-.++.+.|++
T Consensus        19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~   97 (166)
T 1a17_A           19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   97 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccH
Confidence            56677889999999999998653   367788999999999999999999999987663 33566888888999999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHH--HHHHHHHHhcCChHHHHHHHHhc
Q 045063           93 ERGKQVHALMIKGGTDSEPVVK--TALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      ++|...+++..+... .+...+  -.....+.+.|++++|.+.+...
T Consensus        98 ~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           98 RAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            999999999987532 234444  34444577889999999888764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.34  E-value=1.6e-06  Score=64.76  Aligned_cols=155  Identities=10%  Similarity=-0.017  Sum_probs=114.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCC-CHhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNL-TAYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~-~~~t~~~   81 (175)
                      +-..+...|+++.|...|++...     .    ....+..+-..|...|++++|...|.+..+.    +-.+ ...++..
T Consensus        53 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  132 (406)
T 3sf4_A           53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN  132 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            66788889999999999887532     1    2456788888999999999999999887543    1111 1337777


Q ss_pred             HHHHHhcCCC--------------------chhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           82 VLGACSALPA--------------------PERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        82 ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      +-..+...|+                    +++|...+.+..+.    +-.|. ...+..+...|...|++++|...++.
T Consensus       133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (406)
T 3sf4_A          133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ  212 (406)
T ss_dssp             HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred             HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            7788888888                    88888888776532    11222 34778888899999999999988887


Q ss_pred             ccC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          137 IEF-----KD----VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       137 m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+     ++    ..+|..+...|...|++++|...+++..+
T Consensus       213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  255 (406)
T 3sf4_A          213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  255 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            652     12    23788888888999999999998887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.33  E-value=1.4e-05  Score=69.00  Aligned_cols=136  Identities=10%  Similarity=0.028  Sum_probs=86.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      +-.++.+.|++++|...|.+.  .|...|.-++.++.+.|++++|.+.|...++..  ++....+.+..++++.+++++.
T Consensus      1111 LAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A         1111 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH
Confidence            667777778888888887553  566677778888888888888888887654433  2322233466666666665543


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ..+.    +   .++...|..+-+.|...|++++|..+|...     ..|..+..+|++.|+++.|.+.+++
T Consensus      1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A         1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred             HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3321    1   234445555666666666666666666653     3666666667777777666666654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.33  E-value=1.5e-06  Score=56.96  Aligned_cols=118  Identities=7%  Similarity=-0.062  Sum_probs=93.3

Q ss_pred             HHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063           50 SYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG  128 (175)
Q Consensus        50 ~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  128 (175)
                      .+...|+++.|++.+......  .|+ ...+-.+-..+.+.|++++|...+++..+.. +-+...|..+-.+|.+.|+++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence            344567888898888886432  233 3467778889999999999999999999853 346779999999999999999


Q ss_pred             HHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 045063          129 ESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGV-FQAMTR  170 (175)
Q Consensus       129 ~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~  170 (175)
                      +|...|+...  .| +...|..+-..|.+.|+.++|.+. +++..+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999876  45 567899999999999999877665 465543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.33  E-value=1.2e-05  Score=48.70  Aligned_cols=95  Identities=14%  Similarity=-0.071  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc--chHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDS--EPVVKTALMD  119 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~  119 (175)
                      ..|..+...+.+.|++++|...|++..+.. +.+...+..+-.++.+.|++++|...+++..+.. +.  +...|..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            344445555555555555555555554431 1223344444455555555555555555554421 11  2344555555


Q ss_pred             HHHhc-CChHHHHHHHHhcc
Q 045063          120 MYSKY-GLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~~~~-g~~~~a~~~~~~m~  138 (175)
                      .|.+. |++++|.+.++...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHhCCHHHHHHHHHHHh
Confidence            55555 55555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.32  E-value=4.4e-06  Score=54.00  Aligned_cols=129  Identities=9%  Similarity=-0.062  Sum_probs=93.5

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCc-ch
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LT----AYTFTPVLGACSALPAPERGKQVHALMIKG----GTDS-EP  111 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~  111 (175)
                      .++..+-..+...|++++|...+.+..+.... ++    ..++..+-..+...|++++|...+++..+.    +-.+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            35677778888889999999988887543111 11    136777778888889999999888887642    1111 13


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHhccC-----C----CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          112 VVKTALMDMYSKYGLLGESVEAFKEIEF-----K----DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       112 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+..+...|...|++++|.+.++...+     .    ....+..+-..|...|+.++|.+.+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4677888888999999999888887651     1    134577778888899999999999888654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.31  E-value=7.1e-06  Score=53.61  Aligned_cols=97  Identities=13%  Similarity=0.054  Sum_probs=78.4

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +...+..+-..+.+.|++++|...|.+..... +.+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            45567777888889999999999999886652 2355678888888889999999999999988753 335678888889


Q ss_pred             HHHhcCChHHHHHHHHhcc
Q 045063          120 MYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~  138 (175)
                      +|...|++++|...|+...
T Consensus        98 ~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            9999999999999998765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.31  E-value=2.4e-05  Score=54.09  Aligned_cols=154  Identities=9%  Similarity=-0.080  Sum_probs=120.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHhCC----CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc--
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTRSR----NFPATWALFCYMHSTCLNLTAYTFTPVLGACSA--   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~--   88 (175)
                      |=..|...++++.|...|++..+. +...+..|-..|.. +    ++++|...|++..+.|   +...+..|-..+..  
T Consensus        24 lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~   99 (212)
T 3rjv_A           24 LADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQ   99 (212)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGG
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence            455666789999999999997654 66778888888877 6    8999999999987664   45566677777776  


Q ss_pred             --CCCchhHHHHHHHHHHhCCC-cchHHHHHHHHHHHh----cCChHHHHHHHHhccC--CCchhHHHHHHHHHhc-C--
Q 045063           89 --LPAPERGKQVHALMIKGGTD-SEPVVKTALMDMYSK----YGLLGESVEAFKEIEF--KDVVTWNALLSSFLRH-G--  156 (175)
Q Consensus        89 --~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~-g--  156 (175)
                        .+++++|...+++..+.|.. .+...+..|-..|..    .+++++|...|+...+  .+...+..|-..|... |  
T Consensus       100 g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~  179 (212)
T 3rjv_A          100 AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGF  179 (212)
T ss_dssp             GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTT
T ss_pred             CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCC
Confidence              78999999999988775532 126788888888888    8899999999998753  4666777777777643 3  


Q ss_pred             ---ChHHHHHHHHHHHhccc
Q 045063          157 ---LAKEAFGVFQAMTRERV  173 (175)
Q Consensus       157 ---~~~~a~~~~~~m~~~g~  173 (175)
                         +.++|..+|++-.+.|.
T Consensus       180 ~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          180 IEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             BCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHcCC
Confidence               89999999999877664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.31  E-value=1e-05  Score=50.33  Aligned_cols=110  Identities=7%  Similarity=-0.060  Sum_probs=91.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+...|+++.|...|++...   .+...|..+..++.+.|++++|...+.+..+.. +.+...+..+-.++.+.|++
T Consensus        18 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   96 (131)
T 2vyi_A           18 EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKH   96 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCH
Confidence            66778889999999999998753   367788999999999999999999999987752 23466888888999999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  127 (175)
                      ++|...++...+.. +.+...+..+..++.+.|++
T Consensus        97 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           97 VEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            99999999998763 33567888888888888775

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.30  E-value=1.2e-05  Score=48.69  Aligned_cols=95  Identities=11%  Similarity=-0.073  Sum_probs=81.6

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C---CchhHHHHHH
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K---DVVTWNALLS  150 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~---~~~~~~~li~  150 (175)
                      ...+..+-..+.+.|++++|...+++..+.. +.+...|..+...|...|++++|.+.++...+  |   +...|..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            4467778888899999999999999998764 34667899999999999999999999998762  3   4668888999


Q ss_pred             HHHhc-CChHHHHHHHHHHHhc
Q 045063          151 SFLRH-GLAKEAFGVFQAMTRE  171 (175)
Q Consensus       151 ~~~~~-g~~~~a~~~~~~m~~~  171 (175)
                      .+.+. |++++|.+.+++....
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhhc
Confidence            99999 9999999999998875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.28  E-value=2e-05  Score=63.92  Aligned_cols=154  Identities=8%  Similarity=-0.034  Sum_probs=118.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-------------CC------------chhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-------------GD------------LSSLNSQLFSYTRSRNFPATWALFCYMHST   70 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~   70 (175)
                      .+...-+.|+++.|+++|+.+..             |+            ...|...+....+.|..+.|.++|.+.++.
T Consensus       384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44456678999999999998753             21            235777888777889999999999999776


Q ss_pred             -C-CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC------c
Q 045063           71 -C-LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD------V  142 (175)
Q Consensus        71 -~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~  142 (175)
                       + ..+......+.+.... .++.+.|+.+|+...+. ++-+...|...++.....|+.+.|..+|+......      .
T Consensus       464 ~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~  541 (679)
T 4e6h_A          464 KKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK  541 (679)
T ss_dssp             GGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred             cCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence             2 2222223333333222 35699999999999986 55567788899999999999999999999987543      3


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          143 VTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      ..|..++.--.+.|+.+.+..+.+++.+.
T Consensus       542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          542 MIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            57999999888999999999999998764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.28  E-value=1.9e-05  Score=49.41  Aligned_cols=96  Identities=10%  Similarity=-0.008  Sum_probs=82.3

Q ss_pred             CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHH
Q 045063           75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSS  151 (175)
Q Consensus        75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~  151 (175)
                      +...+..+-..+.+.|++++|...+++..+.. +.+...+..+...|...|++++|.+.++...  .| +...|..+...
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            44578888899999999999999999998753 3367789999999999999999999999876  23 56788889999


Q ss_pred             HHhcCChHHHHHHHHHHHhc
Q 045063          152 FLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       152 ~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +.+.|++++|.+.|++..+.
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999987653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.28  E-value=4.3e-05  Score=56.84  Aligned_cols=155  Identities=5%  Similarity=-0.132  Sum_probs=112.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC----------C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC--C--CHhhHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH----------G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN--L--TAYTFT   80 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~--~--~~~t~~   80 (175)
                      +-..+...|+++.|...+++...          + ....+..+-..+...|++++|...+.+.......  +  ...++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            55677889999999999987642          1 1234666778889999999999999997654221  1  234677


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhCCCcch-HHHH-----HHHHHHHhcCChHHHHHHHHhccCCCc-------hhHHH
Q 045063           81 PVLGACSALPAPERGKQVHALMIKGGTDSEP-VVKT-----ALMDMYSKYGLLGESVEAFKEIEFKDV-------VTWNA  147 (175)
Q Consensus        81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~-------~~~~~  147 (175)
                      .+-..+...|++++|...+++.....-.++. ..+.     ..+..+...|++++|...++....++.       ..+..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            7778888999999999999988753211111 1222     234557899999999999998875421       24567


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHh
Q 045063          148 LLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       148 li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +...+...|+.++|...+++...
T Consensus       259 la~~~~~~g~~~~A~~~l~~a~~  281 (373)
T 1hz4_A          259 IARAQILLGEFEPAEIVLEELNE  281 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            77888899999999999988653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.28  E-value=1.4e-05  Score=52.63  Aligned_cols=97  Identities=6%  Similarity=-0.005  Sum_probs=82.8

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +...+..+-..+.+.|++++|...|++..... +-+...|..+-.++.+.|++++|...|++..+.. +-+...|..+-.
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence            55567888889999999999999999987652 2356688899999999999999999999999854 335678999999


Q ss_pred             HHHhcCChHHHHHHHHhcc
Q 045063          120 MYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~  138 (175)
                      +|.+.|++++|...|+...
T Consensus       113 ~~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.28  E-value=5.9e-05  Score=54.55  Aligned_cols=127  Identities=9%  Similarity=0.055  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcC-CCCCHh----hHHHHHHHHhcCCCchhHHHHHHHHHHhCCC-cc----hHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAY----TFTPVLGACSALPAPERGKQVHALMIKGGTD-SE----PVV  113 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~  113 (175)
                      +...+..+...|++++|.+++.+..+.. ..|+..    .+..+...+...+++++|...+.+..+.... ++    ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            3344778889999999999999987642 233321    3334666677788999999999999873222 22    236


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccC------C----CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          114 KTALMDMYSKYGLLGESVEAFKEIEF------K----DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       114 ~~~li~~~~~~g~~~~a~~~~~~m~~------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ++.+-..|...|++++|...|+...+      .    ...+|..+...|.+.|++++|...+++..+
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            89999999999999999999988762      1    234788889999999999999999988653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.27  E-value=4.8e-05  Score=52.53  Aligned_cols=137  Identities=7%  Similarity=-0.010  Sum_probs=111.6

Q ss_pred             HHHHHhhhccC-CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC----CchhHHHHHHHH
Q 045063           28 YTHQVFDEISH-GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP----APERGKQVHALM  102 (175)
Q Consensus        28 ~a~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~----~~~~a~~~~~~m  102 (175)
                      +|.+.|++..+ .+...+..+-..|...+++++|...|++..+.|   +...+..+-..+.. +    +.++|...|++.
T Consensus         4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            45666766554 577888889999999999999999999997775   45566677677777 6    899999999998


Q ss_pred             HHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCCC-----chhHHHHHHHHHh----cCChHHHHHHHHHHH
Q 045063          103 IKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFKD-----VVTWNALLSSFLR----HGLAKEAFGVFQAMT  169 (175)
Q Consensus       103 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~  169 (175)
                      .+.|   +...+..|-..|..    .+++++|.+.|+...+.+     ...+..|-..|..    .++.++|..+|++-.
T Consensus        80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            7754   56677788888877    889999999999988654     4788888888888    789999999999987


Q ss_pred             hc
Q 045063          170 RE  171 (175)
Q Consensus       170 ~~  171 (175)
                      +.
T Consensus       157 ~~  158 (212)
T 3rjv_A          157 SL  158 (212)
T ss_dssp             HT
T ss_pred             Hc
Confidence            65

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.27  E-value=3.4e-05  Score=48.86  Aligned_cols=98  Identities=12%  Similarity=0.032  Sum_probs=79.3

Q ss_pred             CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063           39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM  118 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  118 (175)
                      .+...|..+-..+.+.|++++|...|.+..+.. +.+...|..+-.++.+.|++++|...++...+.. +.+...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            456678888888999999999999999876653 2345688888888889999999999999888754 33567888888


Q ss_pred             HHHHhcCChHHHHHHHHhcc
Q 045063          119 DMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~  138 (175)
                      .+|...|++++|...|+...
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHH
Confidence            99999999999998888765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.25  E-value=2.7e-05  Score=50.13  Aligned_cols=97  Identities=14%  Similarity=0.050  Sum_probs=77.8

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +...+..+-..+.+.|++++|...|.+..... +-+...|..+-.++.+.|++++|...++...+.. +.+...+..+-.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            44456667788889999999999999987652 2355678888888899999999999999988764 345667888889


Q ss_pred             HHHhcCChHHHHHHHHhcc
Q 045063          120 MYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~  138 (175)
                      +|...|++++|...|+...
T Consensus        95 ~~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            9999999999999998865

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.24  E-value=1e-05  Score=50.44  Aligned_cols=96  Identities=6%  Similarity=-0.014  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--Ccc----hHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGT--DSE----PVVKT  115 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~  115 (175)
                      ..|..+...+.+.|++++|...|.+..+.. +.+...+..+-.++...|++++|...+....+...  .++    ...+.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            346667777777888888888888876552 23455677777777778888888888877775421  111    55677


Q ss_pred             HHHHHHHhcCChHHHHHHHHhcc
Q 045063          116 ALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       116 ~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      .+...|.+.|++++|.+.|+...
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHH
Confidence            77778888888888888877765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.23  E-value=7.9e-05  Score=57.80  Aligned_cols=13  Identities=8%  Similarity=-0.020  Sum_probs=5.2

Q ss_pred             CCcchHHHHHHHH
Q 045063           55 RNFPATWALFCYM   67 (175)
Q Consensus        55 g~~~~a~~l~~~m   67 (175)
                      +++++|...|++.
T Consensus       129 ~~~~~A~~~~~~a  141 (490)
T 2xm6_A          129 VDKAESVKWFRLA  141 (490)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            3344444444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.23  E-value=2.2e-06  Score=66.37  Aligned_cols=145  Identities=6%  Similarity=-0.059  Sum_probs=110.9

Q ss_pred             CChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--------------HhhHHHHHHHH
Q 045063           24 KRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--------------AYTFTPVLGAC   86 (175)
Q Consensus        24 ~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--------------~~t~~~ll~~~   86 (175)
                      ++++.|...|+...+   .....|..+-..+.+.|++++|...|.+..+....-.              ...|..+-.++
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555554432   2455688888999999999999999999876422111              46888999999


Q ss_pred             hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHH
Q 045063           87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      .+.|++++|...+++.++.. +.+...|..+-.+|...|++++|...|+...+  | +...|..+-..+.+.|+.+++..
T Consensus       328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999864 34677899999999999999999999999763  3 56788888888989998887764


Q ss_pred             -HHHHHH
Q 045063          164 -VFQAMT  169 (175)
Q Consensus       164 -~~~~m~  169 (175)
                       .++.|.
T Consensus       407 ~~~~~~f  413 (457)
T 1kt0_A          407 RIYANMF  413 (457)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence             455553

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.22  E-value=9.9e-06  Score=52.90  Aligned_cols=91  Identities=9%  Similarity=-0.110  Sum_probs=49.8

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~  154 (175)
                      .+..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|+...  .| +...|..+-.+|..
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            44444555555666666666666555432 2244455555556666666666666665543  22 44455555555666


Q ss_pred             cCChHHHHHHHHHHH
Q 045063          155 HGLAKEAFGVFQAMT  169 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~  169 (175)
                      .|++++|...|++..
T Consensus       102 ~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          102 XGELAEAESGLFLAQ  116 (148)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            666666666555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.22  E-value=3e-05  Score=48.63  Aligned_cols=95  Identities=8%  Similarity=-0.026  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      ..|..+-..+.+.|++++|...|.+..+.. +.+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.+|
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            346666777888888888888888876652 2345677788888888888888888888887753 23466778888888


Q ss_pred             HhcCChHHHHHHHHhcc
Q 045063          122 SKYGLLGESVEAFKEIE  138 (175)
Q Consensus       122 ~~~g~~~~a~~~~~~m~  138 (175)
                      ...|++++|.+.|+...
T Consensus        83 ~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           83 IAVKEYASALETLDAAR   99 (126)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHH
Confidence            88888888888887765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.22  E-value=4.8e-05  Score=46.36  Aligned_cols=96  Identities=5%  Similarity=-0.124  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      ..+..+...+...|++++|...|.+..... +.+...+..+-.++.+.|++++|...+++..+.. +.+...+..+..+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            456667777778888888888888876542 2345567777777778888888888888877653 23466777788888


Q ss_pred             HhcCChHHHHHHHHhccC
Q 045063          122 SKYGLLGESVEAFKEIEF  139 (175)
Q Consensus       122 ~~~g~~~~a~~~~~~m~~  139 (175)
                      ...|++++|.+.++...+
T Consensus        83 ~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            888888888888877653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.21  E-value=4e-05  Score=46.72  Aligned_cols=95  Identities=11%  Similarity=-0.053  Sum_probs=81.1

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHH
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSF  152 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~  152 (175)
                      ...+..+-..+...|++++|...++...+.. +.+...+..+...|.+.|++++|...++...  .| +...|..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4567777888889999999999999998753 3467789999999999999999999999876  33 567888899999


Q ss_pred             HhcCChHHHHHHHHHHHhc
Q 045063          153 LRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       153 ~~~g~~~~a~~~~~~m~~~  171 (175)
                      ...|++++|...+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            9999999999999987654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.21  E-value=1.6e-05  Score=58.02  Aligned_cols=126  Identities=8%  Similarity=-0.029  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhC--C-Ccc--hHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGG--T-DSE--PVV  113 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~-~~~--~~~  113 (175)
                      |+.....|...|++++|...|.+..+.    +-.+. ..+|+.+-.++.+.|++++|...+++..+.-  . .+.  ..+
T Consensus        39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  118 (307)
T 2ifu_A           39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA  118 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            455577888999999999999987543    21111 3488888999999999999999999877431  1 122  357


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccCC-----C----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          114 KTALMDMYSKYGLLGESVEAFKEIEFK-----D----VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       114 ~~~li~~~~~~g~~~~a~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +..+-..|.+ |++++|.+.++...+-     +    ..+|+.+-..|.+.|++++|...|++..+
T Consensus       119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888899988 9999999999876521     1    35788889999999999999999998764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.20  E-value=4.7e-05  Score=48.18  Aligned_cols=93  Identities=13%  Similarity=-0.099  Sum_probs=48.7

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHH
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSF  152 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~  152 (175)
                      ...+..+-..+.+.|++++|...+....+.. +.+...|..+..+|...|++++|...++...  .| +...|..+-.+|
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            3445555555555555555555555555432 2234455555555555555555555555543  12 344555555555


Q ss_pred             HhcCChHHHHHHHHHHH
Q 045063          153 LRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       153 ~~~g~~~~a~~~~~~m~  169 (175)
                      ...|++++|...|++..
T Consensus        88 ~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           88 LEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            55555555555555543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.20  E-value=0.00011  Score=57.03  Aligned_cols=144  Identities=9%  Similarity=0.001  Sum_probs=109.4

Q ss_pred             CCChhHHHHHhhhccC-CCchhHHHHHHHHHh----CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc----CCCch
Q 045063           23 PKRYVYTHQVFDEISH-GDLSSLNSQLFSYTR----SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA----LPAPE   93 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~----~~~~~   93 (175)
                      .++++.|...|++..+ .+...+..|-..|..    .++.++|...|.+..+.|   +...+..+-..+..    .++++
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~  132 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA  132 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            7899999999998754 467778888888888    889999999999987765   44556666666666    67889


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CchhHHHHHHHHHh----cCChHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFK-DVVTWNALLSSFLR----HGLAKEAFGV  164 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~a~~~  164 (175)
                      +|...+++..+.|   +...+..|-..|..    .+++++|.+.|+...+. +...+..|-..|..    .++.++|..+
T Consensus       133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  209 (490)
T 2xm6_A          133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW  209 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence            9999998887765   45667777777776    77888888888876544 55667777777766    6788888888


Q ss_pred             HHHHHhcc
Q 045063          165 FQAMTRER  172 (175)
Q Consensus       165 ~~~m~~~g  172 (175)
                      |++-.+.|
T Consensus       210 ~~~a~~~~  217 (490)
T 2xm6_A          210 YRKSATSG  217 (490)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHCC
Confidence            77765543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.19  E-value=3.7e-05  Score=50.64  Aligned_cols=97  Identities=12%  Similarity=-0.005  Sum_probs=82.4

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +...|..+-..+.+.|++++|...|.+..+.. +-+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            45568888899999999999999999987653 2356688889999999999999999999998864 335778999999


Q ss_pred             HHHhcCChHHHHHHHHhcc
Q 045063          120 MYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~  138 (175)
                      +|.+.|++++|.+.|+...
T Consensus        88 ~~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHH
Confidence            9999999999999999876

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=5.7e-05  Score=48.20  Aligned_cols=97  Identities=10%  Similarity=0.068  Sum_probs=80.6

Q ss_pred             CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHH
Q 045063           39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT----AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVK  114 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  114 (175)
                      .+...+..+...+.+.|++++|...|++..+.  .|+    ...+..+-.++.+.|++++|...++...+.. +.+...|
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            35667888889999999999999999998664  355    5678888888899999999999999988753 3356788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcc
Q 045063          115 TALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       115 ~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ..+..+|...|++++|...|+...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888899999999999999998865

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.18  E-value=2.3e-05  Score=61.98  Aligned_cols=121  Identities=7%  Similarity=-0.100  Sum_probs=104.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+.+.|++++|.+.|++..+   .+...|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++
T Consensus        29 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~  107 (568)
T 2vsy_A           29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQA  107 (568)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence            66778889999999999999754   357788999999999999999999999987652 23456888999999999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc---CChHHHHHHHHhcc
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKY---GLLGESVEAFKEIE  138 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~  138 (175)
                      ++|.+.+++..+.. +.+...+..+...|...   |++++|.+.+++..
T Consensus       108 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A          108 EAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99999999998764 34567889999999999   99999999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.16  E-value=4.6e-05  Score=47.73  Aligned_cols=91  Identities=9%  Similarity=-0.095  Sum_probs=48.2

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~  154 (175)
                      .+..+-..+.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|...++...  .| +...|..+-.++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34444445555555666665555555432 2234455555555555666666555555543  22 34455555555555


Q ss_pred             cCChHHHHHHHHHHH
Q 045063          155 HGLAKEAFGVFQAMT  169 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~  169 (175)
                      .|++++|...|++..
T Consensus        85 ~~~~~~A~~~~~~al   99 (126)
T 3upv_A           85 VKEYASALETLDAAR   99 (126)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHH
Confidence            566666555555543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.13  E-value=1.9e-05  Score=58.60  Aligned_cols=120  Identities=10%  Similarity=-0.049  Sum_probs=99.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CC----------------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GD----------------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY   77 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~----------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~   77 (175)
                      +-..+.+.|+++.|...|++...  |+                ...|..+-.+|.+.|++++|+..|.+..+.. +-+..
T Consensus       153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~  231 (336)
T 1p5q_A          153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEK  231 (336)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence            55677888999999999998753  33                4789999999999999999999999997763 23566


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHH-HHHHHhc
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGES-VEAFKEI  137 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m  137 (175)
                      .+..+-.++...|++++|...|++..+.. +.+...+..+..++.+.|+.++| ...+..|
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999998853 33567889999999999999988 4455554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.13  E-value=5.1e-05  Score=48.82  Aligned_cols=90  Identities=8%  Similarity=-0.089  Sum_probs=48.8

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhc
Q 045063           79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRH  155 (175)
Q Consensus        79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~  155 (175)
                      +..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|+...  .| +...|..+-.+|...
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            3344445555566666666666555432 2244455555556666666666666665544  22 444555555556666


Q ss_pred             CChHHHHHHHHHHH
Q 045063          156 GLAKEAFGVFQAMT  169 (175)
Q Consensus       156 g~~~~a~~~~~~m~  169 (175)
                      |++++|...|++..
T Consensus       100 g~~~~A~~~~~~al  113 (142)
T 2xcb_A          100 GDLDGAESGFYSAR  113 (142)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            66666666555543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.12  E-value=5.3e-05  Score=47.08  Aligned_cols=94  Identities=9%  Similarity=0.011  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-C-------chhHH
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-D-------VVTWN  146 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~-------~~~~~  146 (175)
                      ..+..+-..+...|++++|...+++..+.. +.+...+..+...|...|++++|...++....  | +       ...|.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            467777888899999999999999998764 34677899999999999999999999998762  2 2       66788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          147 ALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       147 ~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .+...+.+.|++++|.+.|++..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            8899999999999999999988764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.12  E-value=5.2e-05  Score=49.87  Aligned_cols=89  Identities=10%  Similarity=-0.030  Sum_probs=64.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+.+.|+++.|...|++..+  | +...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.++.+.|++
T Consensus        17 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~   95 (164)
T 3sz7_A           17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADY   95 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCH
Confidence            45566677888888888877642  3 56667777788888888888888888776552 22355777777777788888


Q ss_pred             hhHHHHHHHHHHh
Q 045063           93 ERGKQVHALMIKG  105 (175)
Q Consensus        93 ~~a~~~~~~m~~~  105 (175)
                      ++|...+++..+.
T Consensus        96 ~~A~~~~~~al~~  108 (164)
T 3sz7_A           96 KGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888877753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.09  E-value=4.8e-05  Score=59.23  Aligned_cols=120  Identities=8%  Similarity=-0.032  Sum_probs=93.9

Q ss_pred             chhhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063           14 TCISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP   90 (175)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~   90 (175)
                      ..+-..+.+.|++++|.+.|++..+  | +...|..+-.+|.+.|++++|.+.|++..+.. +-+..++..+-.++.+.|
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            3356678899999999999998753  3 67789999999999999999999999987762 234568888999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHH--HHhcCChHHHHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDM--YSKYGLLGESVEAFK  135 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  135 (175)
                      ++++|.+.+++..+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999998753 2234456666555  888999999999998

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=0.00018  Score=45.80  Aligned_cols=93  Identities=9%  Similarity=-0.112  Sum_probs=52.5

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc----hHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHH
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE----PVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNAL  148 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~l  148 (175)
                      ...+..+-..+.+.|++++|...+++..+.  .|+    ...|..+...|...|++++|...++...  .| +...|..+
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            335555555566666666666666665542  233    4455556666666666666666665543  22 34455555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 045063          149 LSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       149 i~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      -.+|...|++++|...|++..+
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            5566666666666666665543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.07  E-value=0.00021  Score=51.57  Aligned_cols=130  Identities=10%  Similarity=0.057  Sum_probs=98.4

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-----hhHHHHHHHHhcCCCchhHHHHHHHHHHhCC---Ccc--
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-----YTFTPVLGACSALPAPERGKQVHALMIKGGT---DSE--  110 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--  110 (175)
                      ...+...+..+...|++++|.+.+.+..+.....+.     ..+..+...+...|++++|...+.+..+...   .+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            345667788899999999999999988765322211     2234455566788999999999998875321   111  


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHhcc-----CCC-----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          111 PVVKTALMDMYSKYGLLGESVEAFKEIE-----FKD-----VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+|+.+-..|...|++++|...|+...     .++     ..+|+.+...|.+.|++++|...+++..+
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3488999999999999999999998865     222     25788899999999999999999988653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.07  E-value=0.00016  Score=50.18  Aligned_cols=129  Identities=7%  Similarity=-0.042  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCC-cch-HHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTD-SEP-VVKTALM  118 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~li  118 (175)
                      .+-.+...+.+.|++++|...|++..+... .|. ...+..+-.++.+.|++++|...+++..+.... +.. ..+-.+-
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence            344556778899999999999999977532 222 347778889999999999999999999975322 111 1333333


Q ss_pred             HHHH------------------hcCChHHHHHHHHhccC--CCc-hhHH-----------------HHHHHHHhcCChHH
Q 045063          119 DMYS------------------KYGLLGESVEAFKEIEF--KDV-VTWN-----------------ALLSSFLRHGLAKE  160 (175)
Q Consensus       119 ~~~~------------------~~g~~~~a~~~~~~m~~--~~~-~~~~-----------------~li~~~~~~g~~~~  160 (175)
                      .+|.                  ..|++++|...|+...+  |+. ..+.                 .+-..|.+.|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  165 (225)
T 2yhc_A           86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA  165 (225)
T ss_dssp             HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            4443                  35789999999999874  332 2332                 34456789999999


Q ss_pred             HHHHHHHHHhc
Q 045063          161 AFGVFQAMTRE  171 (175)
Q Consensus       161 a~~~~~~m~~~  171 (175)
                      |...|+++.+.
T Consensus       166 A~~~~~~~l~~  176 (225)
T 2yhc_A          166 VVNRVEGMLRD  176 (225)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.06  E-value=5.8e-05  Score=56.13  Aligned_cols=153  Identities=6%  Similarity=-0.095  Sum_probs=112.8

Q ss_pred             hhhcCCCChhHHHHHhhhccC--C--Cc----hhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCCH----hhHHHHHH
Q 045063           18 IADALPKRYVYTHQVFDEISH--G--DL----SSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLTA----YTFTPVLG   84 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~--~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~~----~t~~~ll~   84 (175)
                      ..+...|+++.|...+++...  |  +.    ..++.+-..+...|++++|.+.+.+.....- ..+.    .++..+-.
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            345678999999999887532  2  22    2466777888899999999999999764311 1111    24566677


Q ss_pred             HHhcCCCchhHHHHHHHHHHh----CCC--cc-hHHHHHHHHHHHhcCChHHHHHHHHhccC--C------CchhHHHHH
Q 045063           85 ACSALPAPERGKQVHALMIKG----GTD--SE-PVVKTALMDMYSKYGLLGESVEAFKEIEF--K------DVVTWNALL  149 (175)
Q Consensus        85 ~~~~~~~~~~a~~~~~~m~~~----~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~------~~~~~~~li  149 (175)
                      .+...|++++|...+++..+.    +..  |. ...+..+...|...|++++|...++....  +      ....|..+-
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            788999999999999988753    221  32 34677788899999999999999987641  1      124577788


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 045063          150 SSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+...|++++|...+++...
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~  202 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLEN  202 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            888999999999999988754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.05  E-value=0.0001  Score=63.78  Aligned_cols=142  Identities=11%  Similarity=0.018  Sum_probs=108.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-------------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-------------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHST   70 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~   70 (175)
                      +-..+...|.+++|..+|++...                         .+..+|..+-.++.+.|++++|.+.|.+-   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            34455566667777666665532                         24567888889999999999999999663   


Q ss_pred             CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH
Q 045063           71 CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS  150 (175)
Q Consensus        71 ~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~  150 (175)
                         -|...|.-+..++.+.|+++++.+.+....+..  ++....+.++.+|++.+++++...+.   ..++...|..+-.
T Consensus      1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A         1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence               455678889999999999999999998877643  44444556999999999988755554   4566677778888


Q ss_pred             HHHhcCChHHHHHHHHHH
Q 045063          151 SFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       151 ~~~~~g~~~~a~~~~~~m  168 (175)
                      .|...|++++|..+|...
T Consensus      1204 ~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1204 RCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHhcCCHHHHHHHHHhh
Confidence            899999999999988864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.05  E-value=6.8e-05  Score=47.47  Aligned_cols=94  Identities=9%  Similarity=-0.020  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC--CCcc----hHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG--TDSE----PVVKTA  116 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~~~~~~  116 (175)
                      .+..+-..+.+.|++++|++.|.+..+.. +-+...|..+-.++.+.|++++|...+++.++..  ..++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            45566677777777777777777765542 1234466677777777777777777777766421  1111    124555


Q ss_pred             HHHHHHhcCChHHHHHHHHhc
Q 045063          117 LMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus       117 li~~~~~~g~~~~a~~~~~~m  137 (175)
                      +-.+|...|++++|.+.|+..
T Consensus        89 lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            666667777777777776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.05  E-value=1.8e-05  Score=61.56  Aligned_cols=118  Identities=7%  Similarity=-0.066  Sum_probs=92.2

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC
Q 045063           47 QLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL  126 (175)
Q Consensus        47 li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  126 (175)
                      +-..+.+.|++++|.+.|++..+. -+-+..+|..+-.++.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            334566789999999999998765 22346789999999999999999999999998853 3356789999999999999


Q ss_pred             hHHHHHHHHhcc--CC-CchhHHHHHHH--HHhcCChHHHHHHHH
Q 045063          127 LGESVEAFKEIE--FK-DVVTWNALLSS--FLRHGLAKEAFGVFQ  166 (175)
Q Consensus       127 ~~~a~~~~~~m~--~~-~~~~~~~li~~--~~~~g~~~~a~~~~~  166 (175)
                      +++|.+.|++..  .| +...+..+-.+  +.+.|++++|.+.++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999876  34 45566666655  888899999999887

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.04  E-value=6.6e-05  Score=51.60  Aligned_cols=108  Identities=7%  Similarity=-0.032  Sum_probs=86.7

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHH----------------HHHHHhcCCCchhHHHHHHHHHHhCCCc
Q 045063           47 QLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTP----------------VLGACSALPAPERGKQVHALMIKGGTDS  109 (175)
Q Consensus        47 li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~  109 (175)
                      ....+.+.|++++|...|.+..+.  .|+. ..|..                +-.++.+.|++++|...+++..+.. +-
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~   86 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN   86 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence            345677899999999999998664  2433 35555                7888899999999999999999864 34


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCC
Q 045063          110 EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGL  157 (175)
Q Consensus       110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~  157 (175)
                      +...|..+-..|...|++++|...|+...  .| +...|..+-..|...|+
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            67799999999999999999999999986  44 56678888877766553

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.00  E-value=0.00012  Score=48.69  Aligned_cols=119  Identities=11%  Similarity=0.013  Sum_probs=89.0

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHH-HHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFS-YTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~   91 (175)
                      +-.++.+.|++++|...|++...  |+...+..+... +.+.+...+|...|++..+.  .| +...+..+-.++.+.|+
T Consensus        46 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~  123 (176)
T 2r5s_A           46 KADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGR  123 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence            67788899999999999999864  333222222111 22333445678888887654  34 45688888999999999


Q ss_pred             chhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           92 PERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      +++|...+++..+....+ +...+..+...|...|+.++|...|+.
T Consensus       124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            999999999998754332 356899999999999999999988875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.00  E-value=2.3e-05  Score=48.76  Aligned_cols=85  Identities=12%  Similarity=0.005  Sum_probs=63.4

Q ss_pred             hCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHH
Q 045063           53 RSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGES  130 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  130 (175)
                      ..|++++|...|.+..+.+. .|+ ...+..+-.++.+.|++++|...+++..+.. +-+...+..+..+|.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            46888999999999877542 133 3478888888889999999999999988764 23466888888899999999999


Q ss_pred             HHHHHhcc
Q 045063          131 VEAFKEIE  138 (175)
Q Consensus       131 ~~~~~~m~  138 (175)
                      ...++...
T Consensus        81 ~~~~~~al   88 (117)
T 3k9i_A           81 VELLLKII   88 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.99  E-value=8.6e-05  Score=46.98  Aligned_cols=93  Identities=11%  Similarity=-0.031  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-C-------chhHH
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-D-------VVTWN  146 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~-------~~~~~  146 (175)
                      .++..+-+.+.+.|++++|...|++.++.. +.+...|..+-.+|.+.|++++|.+.++...+  | +       ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            367778889999999999999999998753 34567899999999999999999999988752  2 1       13577


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 045063          147 ALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       147 ~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .+-.++...|++++|.+.|++-..
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            777888899999999999988654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.99  E-value=8.4e-05  Score=46.64  Aligned_cols=93  Identities=6%  Similarity=-0.126  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK  123 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  123 (175)
                      +-.+-..+.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|...+++..+.. +-+...+..+..+|.+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            3344455556666666666666654431 1233455555556666666666666666665532 1234455566666666


Q ss_pred             cCChHHHHHHHHhcc
Q 045063          124 YGLLGESVEAFKEIE  138 (175)
Q Consensus       124 ~g~~~~a~~~~~~m~  138 (175)
                      .|++++|...++...
T Consensus        98 ~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           98 EHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            666666666665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.98  E-value=6.2e-05  Score=54.60  Aligned_cols=132  Identities=8%  Similarity=-0.049  Sum_probs=94.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~   91 (175)
                      ...++...|++++|.++|+.+..  |+....-.+-..+.+.+++++|+..|+...+.. .|.  ...+..+-.++.+.|+
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence            44567788999999999998864  432244445557788999999999998553332 121  2367777888899999


Q ss_pred             chhHHHHHHHHHHhCCCc--chHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHH
Q 045063           92 PERGKQVHALMIKGGTDS--EPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNAL  148 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~l  148 (175)
                      +++|...|++.......|  ....+...-.++.+.|+.++|..+|+++.  .|+...+..|
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL  247 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            999999999887433224  34467777888889999999999999886  4443334333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.97  E-value=8.9e-05  Score=46.53  Aligned_cols=93  Identities=12%  Similarity=-0.042  Sum_probs=78.8

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR  154 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~  154 (175)
                      .+..+-..+.+.|++++|...+++..+.. +.+...|..+-.++...|++++|...|+...  .| +...|..+-.+|.+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45556677889999999999999999853 3467789999999999999999999999876  34 56788899999999


Q ss_pred             cCChHHHHHHHHHHHhc
Q 045063          155 HGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       155 ~g~~~~a~~~~~~m~~~  171 (175)
                      .|++++|...|++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999998753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.95  E-value=0.00014  Score=55.02  Aligned_cols=152  Identities=9%  Similarity=-0.121  Sum_probs=110.9

Q ss_pred             hhhcCCCChhHHHHHhhhccC--C---Cc---------------hhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH
Q 045063           18 IADALPKRYVYTHQVFDEISH--G---DL---------------SSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA   76 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~---~~---------------~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~   76 (175)
                      ..+.+.|++++|.+.|.++.+  +   +.               ..+..+...|.+.|++++|.+.+.+.... +-.++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            345678999999999998742  1   11               13678899999999999999999997653 111222


Q ss_pred             h----hHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhcc----C----
Q 045063           77 Y----TFTPVLGACSALPAPERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIE----F----  139 (175)
Q Consensus        77 ~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~----~----  139 (175)
                      .    +.+.+-..+...|+.+.+..++......    +..+. ..++..+...|...|++++|...++...    .    
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence            1    2333333444568889999888887632    22222 4578899999999999999999988764    1    


Q ss_pred             C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          140 K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       140 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      + ....|..++..|...|++++|..++++..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            1 23478889999999999999999988764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.95  E-value=6.8e-05  Score=58.63  Aligned_cols=122  Identities=8%  Similarity=-0.058  Sum_probs=94.3

Q ss_pred             HHHhCCCcchHHHHHHHHHhc---CCC---CC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHh-----C-CCcch-HHHH
Q 045063           50 SYTRSRNFPATWALFCYMHST---CLN---LT-AYTFTPVLGACSALPAPERGKQVHALMIKG-----G-TDSEP-VVKT  115 (175)
Q Consensus        50 ~~~~~g~~~~a~~l~~~m~~~---~~~---~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~-~~~~  115 (175)
                      .+...|++++|..++++.++.   -+-   |+ ..+++.|...|...|++++|..++++...-     | -.|++ .+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            455789999999999987643   122   22 348999999999999999999999987732     2 24444 4889


Q ss_pred             HHHHHHHhcCChHHHHHHHHhcc-------CCC----chhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          116 ALMDMYSKYGLLGESVEAFKEIE-------FKD----VVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       116 ~li~~~~~~g~~~~a~~~~~~m~-------~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .|...|...|++++|..++++..       .||    ..+.+.+-.++...|..+.|+.+++++.++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888765       232    234667777888889999999999998763

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.92  E-value=0.00033  Score=43.64  Aligned_cols=93  Identities=9%  Similarity=-0.055  Sum_probs=71.5

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc---hHHHHHHHH
Q 045063           45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE---PVVKTALMD  119 (175)
Q Consensus        45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~  119 (175)
                      -.+-..+.+.|++++|.+.|.+..+......  ...+..+-.++.+.|++++|...++...+... .+   ...+..+..
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~   84 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence            3456677889999999999999876532111  13677777888899999999999999887532 22   456778888


Q ss_pred             HHHhcCChHHHHHHHHhcc
Q 045063          120 MYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~  138 (175)
                      +|.+.|++++|...|+...
T Consensus        85 ~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            8999999999999998876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.91  E-value=0.00032  Score=43.68  Aligned_cols=89  Identities=16%  Similarity=0.003  Sum_probs=60.2

Q ss_pred             hhhhcCCCChhHHHHHhhhccC--CCc----hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhc
Q 045063           17 SIADALPKRYVYTHQVFDEISH--GDL----SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSA   88 (175)
Q Consensus        17 l~~~~~~~~~~~a~~~f~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~   88 (175)
                      -..+.+.|+++.|...|++...  |+.    ..+..+-.++.+.|++++|...|.+..+......  ...+..+-.++.+
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            3455667888888888877643  332    3566677777788888888888888765422111  3456666677777


Q ss_pred             CCCchhHHHHHHHHHHh
Q 045063           89 LPAPERGKQVHALMIKG  105 (175)
Q Consensus        89 ~~~~~~a~~~~~~m~~~  105 (175)
                      .|++++|...++...+.
T Consensus        89 ~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           89 EGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            88888888888877764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.89  E-value=3.1e-05  Score=48.13  Aligned_cols=83  Identities=6%  Similarity=-0.123  Sum_probs=56.6

Q ss_pred             CCCChhHHHHHhhhccCC------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           22 LPKRYVYTHQVFDEISHG------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      ..|++++|...|++..+-      +...|..+-.+|.+.|++++|...|++..+... -+...+..+-.++.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence            457778888888776432      345577777888888888888888888766522 2345677777778888888888


Q ss_pred             HHHHHHHHHh
Q 045063           96 KQVHALMIKG  105 (175)
Q Consensus        96 ~~~~~~m~~~  105 (175)
                      ...+++..+.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888877754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.88  E-value=2.4e-05  Score=52.83  Aligned_cols=123  Identities=11%  Similarity=0.029  Sum_probs=94.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCC--CHhhHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---------GDLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNL--TAYTFT   80 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~--~~~t~~   80 (175)
                      +-..+...|+++.|...|++..+         .....+..+-..+...|++++|.+.|.+..+.    +-.|  ....+.
T Consensus        32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  111 (203)
T 3gw4_A           32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY  111 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence            66778889999999999998653         13456888889999999999999999997643    2122  133677


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHh---CCCcc--hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           81 PVLGACSALPAPERGKQVHALMIKG---GTDSE--PVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        81 ~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      .+-..+...|++++|...+++..+.   .-.+.  ..++..+...|...|++++|.+.+++..
T Consensus       112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            7888888999999999999988742   11122  2356788899999999999998887643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.88  E-value=0.00037  Score=50.20  Aligned_cols=97  Identities=12%  Similarity=0.038  Sum_probs=76.7

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      +...+..+-..+.+.|++++|...|.+..+.. +-+...|..+-.++.+.|++++|...+++..+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34556777788889999999999999887652 2256678888888889999999999998887642 234668888888


Q ss_pred             HHHhcCChHHHHHHHHhcc
Q 045063          120 MYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~  138 (175)
                      +|...|++++|...|+...
T Consensus        81 ~~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            9999999999999888765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.86  E-value=8.3e-05  Score=50.48  Aligned_cols=120  Identities=8%  Similarity=-0.098  Sum_probs=91.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCc----------------hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDL----------------SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA   76 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~----------------~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~   76 (175)
                      +-..+.+.|+++.|...|++...   .+.                ..|..+-.+|.+.|++++|...+.+..+. -+.+.
T Consensus        44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~  122 (198)
T 2fbn_A           44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNV  122 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccH
Confidence            45567789999999999998753   222                67888999999999999999999998776 23456


Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHH-HHHHhc
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESV-EAFKEI  137 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m  137 (175)
                      ..+..+-.++...|++++|...+++..+.. +-+...+..+..++...++.+++. ..|..+
T Consensus       123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688888899999999999999999998753 335668888888888887777765 444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.85  E-value=6.8e-05  Score=48.20  Aligned_cols=122  Identities=11%  Similarity=-0.005  Sum_probs=93.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~   81 (175)
                      +-..+...|+++.|...|++..+     ++    ...+..+-..+...|++++|.+.|++..+.    +-.+. ...+..
T Consensus        15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   94 (164)
T 3ro3_A           15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS   94 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            55677789999999999998653     12    246888999999999999999999997643    11111 346777


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHh----CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           82 VLGACSALPAPERGKQVHALMIKG----GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      +-.++...|++++|...+++..+.    +-.+ ....+..+...|...|++++|.+.+++.
T Consensus        95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            888889999999999999888743    2111 1346788889999999999999988764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.84  E-value=0.00017  Score=58.56  Aligned_cols=151  Identities=7%  Similarity=-0.057  Sum_probs=109.1

Q ss_pred             cCCCChhHHH-HHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC---------CCC------------
Q 045063           21 ALPKRYVYTH-QVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL---------NLT------------   75 (175)
Q Consensus        21 ~~~~~~~~a~-~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~---------~~~------------   75 (175)
                      -+.|+.+.|. ++|+....  | +...|-..+....+.|+++.|.++|+.......         .|+            
T Consensus       354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~  433 (679)
T 4e6h_A          354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL  433 (679)
T ss_dssp             HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence            3457777886 88887643  3 555677788888889999999999999876410         132            


Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc-CChHHHHHHHHhccC---CCchhHHHHHHH
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY-GLLGESVEAFKEIEF---KDVVTWNALLSS  151 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~---~~~~~~~~li~~  151 (175)
                      ...|...++...+.|..+.|+++|....+.........|...+..-.+. ++.+.|..+|+...+   .+...|...+.-
T Consensus       434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f  513 (679)
T 4e6h_A          434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF  513 (679)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            2368888888888899999999999998751112233443333333344 458999999998763   366678888888


Q ss_pred             HHhcCChHHHHHHHHHHHhc
Q 045063          152 FLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       152 ~~~~g~~~~a~~~~~~m~~~  171 (175)
                      ....|+.+.|..+|+.....
T Consensus       514 e~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          514 LIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             HHHHTCHHHHHHHHHHHTTT
T ss_pred             HHhCCCHHHHHHHHHHHHHh
Confidence            88899999999999987654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.82  E-value=0.00023  Score=52.82  Aligned_cols=128  Identities=6%  Similarity=0.039  Sum_probs=79.9

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh------------------hHHHHHHHHhcCCCchhHHHHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY------------------TFTPVLGACSALPAPERGKQVHALM  102 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~m  102 (175)
                      ...+..+-..+.+.|++++|...|.+..+.  .|+..                  .|..+-.++.+.|++++|...+++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445777788888999999999999997654  23332                  7888888999999999999999999


Q ss_pred             HHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHH-HHhcCChHHHHHHHHHHHhc
Q 045063          103 IKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSS-FLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       103 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .+.. +.+...|..+-.+|...|++++|...|+...+  | +...+..+-.. ....+..+++...|+.|...
T Consensus       257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            8753 34677999999999999999999999999863  3 44555555544 33456677888888887643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.80  E-value=0.00012  Score=55.90  Aligned_cols=51  Identities=14%  Similarity=0.006  Sum_probs=29.6

Q ss_pred             hhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063           19 ADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHS   69 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~   69 (175)
                      .+...+++++|.+.+++...   .+...+..+-..|.+.|++++|...|.+..+
T Consensus       222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  275 (472)
T 4g1t_A          222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE  275 (472)
T ss_dssp             CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            34455667777777776532   3455567777777777777777777776654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.76  E-value=0.00021  Score=51.77  Aligned_cols=123  Identities=9%  Similarity=-0.135  Sum_probs=93.1

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc--hHHHHHHHHHHHh
Q 045063           46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE--PVVKTALMDMYSK  123 (175)
Q Consensus        46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~  123 (175)
                      .+...+...|++++|.++|......+  |+....-.+-..+.+.+++++|...++...+.. .|.  ...+-.+-.++..
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence            45677888999999999999986543  544455555557889999999999998543321 121  2367777788999


Q ss_pred             cCChHHHHHHHHhccC----C--CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          124 YGLLGESVEAFKEIEF----K--DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       124 ~g~~~~a~~~~~~m~~----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      .|++++|...|++...    |  ....+...-.++.+.|+.++|..+|+++...
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            9999999999998852    2  1235566677788999999999999998764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.74  E-value=4.7e-05  Score=46.22  Aligned_cols=92  Identities=11%  Similarity=-0.029  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-------hHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-------PVVK  114 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~  114 (175)
                      ..|..+-..+.+.|++++|.+.|.+..+.. +.+...+..+-.++.+.|++++|...+++..+.  .|+       ...+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence            345555666666677777777776665441 223445666666666666666666666666542  233       3344


Q ss_pred             HHHHHHHHhcCChHHHHHHHHh
Q 045063          115 TALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus       115 ~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      ..+-.++...|+++.|.+.++.
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHH
Confidence            4444555555555555444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.71  E-value=0.00055  Score=44.73  Aligned_cols=97  Identities=6%  Similarity=-0.011  Sum_probs=73.7

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhc--------CC--------CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHST--------CL--------NLT-AYTFTPVLGACSALPAPERGKQVHALMI  103 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------~~--------~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~  103 (175)
                      ...+...-..+.+.|++++|...|.+....        ..        .|. ...|..+-.++.+.|++++|...++..+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345777778889999999999999997654        00        122 2467777788888888888888888888


Q ss_pred             HhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          104 KGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       104 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +.. +.+...|..+-.+|...|++++|...|+...
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            753 3456688888888888888888888888765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.70  E-value=0.00094  Score=51.00  Aligned_cols=149  Identities=9%  Similarity=-0.062  Sum_probs=79.4

Q ss_pred             cCCCChhHHHHHhhhccC--C-CchhHHHHHHH---HHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh----cCC
Q 045063           21 ALPKRYVYTHQVFDEISH--G-DLSSLNSQLFS---YTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS----ALP   90 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~----~~~   90 (175)
                      ...++++.|...|++..+  | +...+..+..+   +...++.++|++.|++..+... .+..++..+-..+.    ..+
T Consensus       149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~  227 (472)
T 4g1t_A          149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGE  227 (472)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC----
T ss_pred             HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhh
Confidence            345677888888887642  3 33333333333   3345666667776666544321 12223333333332    234


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC----------------------------
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK----------------------------  140 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~----------------------------  140 (175)
                      +.++|.+.+++..... +.+...+..+...|.+.|++++|...++...  .|                            
T Consensus       228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~  306 (472)
T 4g1t_A          228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM  306 (472)
T ss_dssp             --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            5566666666655432 2344456666666666666666665555432  11                            


Q ss_pred             --------------------------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          141 --------------------------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       141 --------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                                                +...|..+-..|...|++++|.+.|++..+.
T Consensus       307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence                                      2334555666777788888888888776543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.69  E-value=0.00034  Score=52.62  Aligned_cols=121  Identities=8%  Similarity=-0.027  Sum_probs=95.5

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhc--------------CCCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHST--------------CLNL-TAYTFTPVLGACSALPAPERGKQVHALMIKGG  106 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------------~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~  106 (175)
                      ..|..+-..+.+.|++++|.+.|.+..+.              ...| +...|..+-.++.+.|++++|...+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            34778888999999999999999998751              1223 34578888899999999999999999998743


Q ss_pred             CCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHH
Q 045063          107 TDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus       107 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                       +.+...|..+-.+|.+.|++++|.+.|+...  .| +...+..+-..+.+.++.+++..
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             2356788999999999999999999999876  34 55677777777777777766654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.68  E-value=0.00014  Score=56.92  Aligned_cols=121  Identities=8%  Similarity=-0.076  Sum_probs=95.1

Q ss_pred             hhcCCCChhHHHHHhhhccC-------C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc-----C-CCCCH-hhHH
Q 045063           19 ADALPKRYVYTHQVFDEISH-------G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST-----C-LNLTA-YTFT   80 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~-~t~~   80 (175)
                      .+...|++++|..++++..+       +    -..+++.|...|...|++++|..++.+.+.-     | -.|+. .+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            35688999999999987642       1    2446999999999999999999999997642     2 22443 4899


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHh-----CC-Ccch-HHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063           81 PVLGACSALPAPERGKQVHALMIKG-----GT-DSEP-VVKTALMDMYSKYGLLGESVEAFKEIEF  139 (175)
Q Consensus        81 ~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~  139 (175)
                      .|-..+...|++++|..++++...-     |- .|++ .+.+.+-.++...|.+++|+.++..+.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987732     32 3443 3667788899999999999999998863

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.67  E-value=0.0082  Score=44.00  Aligned_cols=146  Identities=6%  Similarity=-0.053  Sum_probs=116.8

Q ss_pred             CCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcc--hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC------
Q 045063           23 PKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFP--ATWALFCYMHSTCLNLTAYTFTPVLGACSALPA------   91 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~------   91 (175)
                      .++++++..+++++.+   ++..+|+.--.++.+.|+++  ++++.++++.+... -|...|+.-...+.+.+.      
T Consensus       123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence            3789999999998863   58888988888888889988  99999999987643 466688777777777766      


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH-HHHHHHhccC------CCchhHHHHHHHHHhcCChHHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE-SVEAFKEIEF------KDVVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      ++++.+.+...++.. +-|...|+-+-..+.+.|.... +..+.....+      ++...+..+...|.+.|+.++|.++
T Consensus       202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            788888888888764 4577899998888888888555 5556665442      3667889999999999999999999


Q ss_pred             HHHHHh
Q 045063          165 FQAMTR  170 (175)
Q Consensus       165 ~~~m~~  170 (175)
                      ++.+.+
T Consensus       281 ~~~l~~  286 (306)
T 3dra_A          281 YDLLKS  286 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.64  E-value=0.00067  Score=48.84  Aligned_cols=89  Identities=3%  Similarity=-0.140  Sum_probs=75.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+.+.|++++|...|++...  | +...|..+-.+|.+.|++++|...+.+..+.. +-+...+..+-.++.+.|++
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~   88 (281)
T 2c2l_A           10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESY   88 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence            45677789999999999998753  4 67789999999999999999999999986542 23456888889999999999


Q ss_pred             hhHHHHHHHHHHh
Q 045063           93 ERGKQVHALMIKG  105 (175)
Q Consensus        93 ~~a~~~~~~m~~~  105 (175)
                      ++|...++...+.
T Consensus        89 ~~A~~~~~~al~l  101 (281)
T 2c2l_A           89 DEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.63  E-value=0.00033  Score=54.12  Aligned_cols=121  Identities=8%  Similarity=-0.010  Sum_probs=96.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-C---------------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-D---------------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY   77 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~   77 (175)
                      +-..+.+.|+++.|...|++..+  | +               ...|..+-.+|.+.|++++|+..|.+..+.. +-+..
T Consensus       274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~  352 (457)
T 1kt0_A          274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK  352 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHH
Confidence            45667889999999999998753  3 2               4789999999999999999999999987763 23566


Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHH-HHHhcc
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVE-AFKEIE  138 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~  138 (175)
                      .|..+-.++.+.|++++|...|++..+.. +-+...+..+..++.+.|+.+++.+ .+..|-
T Consensus       353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          353 GLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999998742 2345688999999999999888764 445443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.60  E-value=0.002  Score=49.66  Aligned_cols=148  Identities=10%  Similarity=0.011  Sum_probs=85.0

Q ss_pred             hhhhhcCCC---ChhHHHHHhhhccCC---CchhHHHHHHHHHhC----CCcchHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 045063           16 ISIADALPK---RYVYTHQVFDEISHG---DLSSLNSQLFSYTRS----RNFPATWALFCYMHSTCLNLTAYTFTPVLGA   85 (175)
Q Consensus        16 ll~~~~~~~---~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~----g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~   85 (175)
                      |-..|.+.|   +.++|.+.|++..+.   +...+..+-..|...    +++++|.+.|++.. .   -+...+..+-..
T Consensus       182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~  257 (452)
T 3e4b_A          182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHH
T ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHH
Confidence            333444455   666666666665431   222234455555443    56667777776664 2   222233333333


Q ss_pred             -H--hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC-----ChHHHHHHHHhccCC-CchhHHHHHHHHHh--
Q 045063           86 -C--SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG-----LLGESVEAFKEIEFK-DVVTWNALLSSFLR--  154 (175)
Q Consensus        86 -~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~-~~~~~~~li~~~~~--  154 (175)
                       +  ...++.++|...|++..+.|   +...+..|-..|. .|     ++++|.+.|+... + +...+..|-..|..  
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~  332 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGY  332 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTT
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCC
Confidence             2  34667777777777776655   4555556666665 44     7777877777777 5 44455555555544  


Q ss_pred             --cCChHHHHHHHHHHHhcc
Q 045063          155 --HGLAKEAFGVFQAMTRER  172 (175)
Q Consensus       155 --~g~~~~a~~~~~~m~~~g  172 (175)
                        ..+.++|..+|++-.+.|
T Consensus       333 g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          333 LGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             TSSCCHHHHHHHHHHHHTTT
T ss_pred             CCCcCHHHHHHHHHHHHhhC
Confidence              237778888877766655

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.57  E-value=0.0004  Score=52.27  Aligned_cols=115  Identities=5%  Similarity=-0.052  Sum_probs=93.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA   76 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~   76 (175)
                      +-..+.+.|+++.|.+.|++..+                   .+...|..+-.+|.+.|++++|++.+++..+.. +-+.
T Consensus       229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~  307 (370)
T 1ihg_A          229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT  307 (370)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhH
Confidence            55677889999999999998653                   145678999999999999999999999987652 2345


Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHH
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVE  132 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  132 (175)
                      ..+..+-.++.+.|++++|...+++..+.. +.+...+..+...+.+.++.+++.+
T Consensus       308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          308 KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            688888899999999999999999998753 2356678888888888888877754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.00099  Score=50.28  Aligned_cols=155  Identities=6%  Similarity=-0.192  Sum_probs=113.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----CCc----hhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----GDL----SSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~   81 (175)
                      |...|.+.|++++|.+.+.++..     ++.    ...+.+-..+...|+.+.|..++.+....    +..+. ..++..
T Consensus        61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (434)
T 4b4t_Q           61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK  140 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            77889999999999999988753     111    12333334444568999999999887542    33333 347788


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHh--CC--Cc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC-----chhHH
Q 045063           82 VLGACSALPAPERGKQVHALMIKG--GT--DS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-----KD-----VVTWN  146 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-----~~~~~  146 (175)
                      +-..+...|++++|..+++.....  +.  .+ ....+..++..|...|++++|...++....     ++     ...|.
T Consensus       141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  220 (434)
T 4b4t_Q          141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL  220 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence            889999999999999999988753  11  22 235889999999999999999999887541     22     23566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 045063          147 ALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       147 ~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .+...+...|+++.|...|.+..+
T Consensus       221 ~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          221 MSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            677777888999999888877643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.50  E-value=0.0013  Score=40.31  Aligned_cols=79  Identities=8%  Similarity=-0.162  Sum_probs=62.1

Q ss_pred             chHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           58 PATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        58 ~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      ++|+..|.+..+.. +-+...+..+-..+.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|+..
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56778888876542 2345678888888899999999999999988753 334668888889999999999999988876


Q ss_pred             c
Q 045063          138 E  138 (175)
Q Consensus       138 ~  138 (175)
                      .
T Consensus        80 l   80 (115)
T 2kat_A           80 L   80 (115)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.50  E-value=0.0012  Score=43.06  Aligned_cols=87  Identities=7%  Similarity=-0.027  Sum_probs=63.3

Q ss_pred             hhhcCCCChhHHHHHhhhccCC---------------------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063           18 IADALPKRYVYTHQVFDEISHG---------------------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA   76 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~~---------------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~   76 (175)
                      ..+.+.|+++.|...|.+...-                     +...|..+-.+|.+.|++++|+..+.+..+.. +-+.
T Consensus        19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~   97 (162)
T 3rkv_A           19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNE   97 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccch
Confidence            4566778888888888775321                     23467777888888888888888888876652 2345


Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKG  105 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~  105 (175)
                      ..|..+-.++...|++++|...+....+.
T Consensus        98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           98 KALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            57777888888888888888888887764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.48  E-value=7.8e-05  Score=45.23  Aligned_cols=92  Identities=8%  Similarity=-0.128  Sum_probs=70.3

Q ss_pred             CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC-------chhH
Q 045063           75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KD-------VVTW  145 (175)
Q Consensus        75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-------~~~~  145 (175)
                      +...+..+-..+.+.|++++|...+++..+.. +.+...|..+-.+|.+.|++++|.+.++...+  |+       ...+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            45577788888999999999999999998763 34677899999999999999999999998763  43       3345


Q ss_pred             HHHHHHHHhcCChHHHHHHHHH
Q 045063          146 NALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus       146 ~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ..+-.++...|+.+.|...+++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHH
Confidence            5555666666666666554443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.47  E-value=0.0013  Score=50.61  Aligned_cols=151  Identities=9%  Similarity=0.016  Sum_probs=63.9

Q ss_pred             hhhhhcCCCCh---hHHHHHhhhccCCCchhHHHHHHHHHhCC-----CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh
Q 045063           16 ISIADALPKRY---VYTHQVFDEISHGDLSSLNSQLFSYTRSR-----NFPATWALFCYMHSTCLNLTAYTFTPVLGACS   87 (175)
Q Consensus        16 ll~~~~~~~~~---~~a~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~   87 (175)
                      |=..|...|+.   ++|...|++..+.+...+..+-..+...|     +.++|...|++..+.|...   .+..|-..+.
T Consensus        41 Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~  117 (452)
T 3e4b_A           41 LADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYL  117 (452)
T ss_dssp             CC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHH
T ss_pred             HHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHH
Confidence            33444456666   77777777766555566666666455544     5667888887776654322   3444444444


Q ss_pred             cCCCch---hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh----HHHHHHHHhccCCCchhHHHHHHHHHhcC---C
Q 045063           88 ALPAPE---RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL----GESVEAFKEIEFKDVVTWNALLSSFLRHG---L  157 (175)
Q Consensus        88 ~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~li~~~~~~g---~  157 (175)
                      ..+..+   .+.+.+......|   +...+..+-..|...+.+    +.+..+++.....+...+..|-..|...|   +
T Consensus       118 ~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~  194 (452)
T 3e4b_A          118 QYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQ  194 (452)
T ss_dssp             HCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHH
T ss_pred             hCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Confidence            433322   2333333332222   233444455555555533    33334444444445556666666666666   6


Q ss_pred             hHHHHHHHHHHHhcc
Q 045063          158 AKEAFGVFQAMTRER  172 (175)
Q Consensus       158 ~~~a~~~~~~m~~~g  172 (175)
                      .++|.+.|++-.+.|
T Consensus       195 ~~~A~~~~~~aa~~g  209 (452)
T 3e4b_A          195 QAELLKQMEAGVSRG  209 (452)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            666666666655544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.44  E-value=0.0043  Score=39.65  Aligned_cols=109  Identities=10%  Similarity=-0.064  Sum_probs=71.7

Q ss_pred             CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHH
Q 045063           56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESV  131 (175)
Q Consensus        56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~  131 (175)
                      ++++|++.|++..+.| .|...    +-..+...+.+++|...|++..+.|   +...+..|-..|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5567777777776665 23332    4444555556667777777766653   45666666666766    67778887


Q ss_pred             HHHHhccCC-CchhHHHHHHHHHh----cCChHHHHHHHHHHHhcc
Q 045063          132 EAFKEIEFK-DVVTWNALLSSFLR----HGLAKEAFGVFQAMTRER  172 (175)
Q Consensus       132 ~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  172 (175)
                      +.|+..-+. +...+..|-..|..    .++.++|..+|++-.+.|
T Consensus        82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            777776543 55666666666666    678888888887776655

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.44  E-value=0.0024  Score=39.05  Aligned_cols=76  Identities=5%  Similarity=-0.063  Sum_probs=55.4

Q ss_pred             HHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063           28 YTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        28 ~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  104 (175)
                      .|...|++..+   .+...|..+-.+|.+.|++++|...|.+..+.. +.+...|..+-.++.+.|+.++|...++...+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45566665432   356677888888888888888888888876652 23345777778888888888888888888765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.41  E-value=0.0028  Score=41.92  Aligned_cols=95  Identities=8%  Similarity=-0.028  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-C-----CH-----hhHHHHHHHHhcCCCchhHHHHHHHHHHh-----C
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLN-L-----TA-----YTFTPVLGACSALPAPERGKQVHALMIKG-----G  106 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~-----~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~  106 (175)
                      .+...-..+.+.|++++|.+.|++..+.... |     +.     ..|..+-.++.+.|++++|...+++.++.     .
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            3555667777889999999999987654222 1     11     15555666666666666666666665552     1


Q ss_pred             CCcc-hHHH----HHHHHHHHhcCChHHHHHHHHhc
Q 045063          107 TDSE-PVVK----TALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus       107 ~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      +.|+ ...|    ...-.++...|++++|...|+..
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            1333 2345    55555555666666665555554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.39  E-value=0.0025  Score=42.13  Aligned_cols=94  Identities=9%  Similarity=0.046  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc------c-----hHHHHHHHHHHHhcCChHHHHHHHHhcc-------
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDS------E-----PVVKTALMDMYSKYGLLGESVEAFKEIE-------  138 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~-------  138 (175)
                      ..+...-+.+.+.|++++|...|++.++.....      +     ...|..+-.++.+.|++++|...++...       
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            345566677888999999999999998743220      2     2389999999999999999999888865       


Q ss_pred             --CC-CchhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          139 --FK-DVVTW----NALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       139 --~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                        .| +...|    ...-.++...|++++|+..|++-.+
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence              34 34567    8888899999999999999998754

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.38  E-value=0.0018  Score=48.02  Aligned_cols=92  Identities=9%  Similarity=-0.097  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH------------------HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV------------------VKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------------------~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ..+..+-..+.+.|++++|...|.+..+.  .|+..                  .|..+..+|.+.|++++|...++...
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35667778889999999999999998764  34433                  78999999999999999999999876


Q ss_pred             --CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          139 --FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       139 --~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                        .| +...|..+-.+|...|++++|...|++..+
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              34 677899999999999999999999998754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.27  E-value=0.0022  Score=38.40  Aligned_cols=62  Identities=6%  Similarity=0.068  Sum_probs=45.5

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ...+..+-.++.+.|++++|...+++..+.. +.+...|..+-.+|.+.|++++|.+.|+...
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4467777777788888888888888877653 2345577778888888888888888777643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.24  E-value=0.0089  Score=46.70  Aligned_cols=124  Identities=10%  Similarity=0.091  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHH--HHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFT--PVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      ..|-..+....+.+.++.|.++|.+. +. ...+...|.  +.+.... .++++.|+.+|+...+.- +-+...|...++
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid  362 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            34555666666678899999999998 32 112333443  3333322 236999999999998753 223456777888


Q ss_pred             HHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          120 MYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ...+.|+.+.|..+|+... .....|...+.-=...|+.+.+..++++...
T Consensus       363 ~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          363 FLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8889999999999999984 3577899999877888999999998888764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.24  E-value=0.0047  Score=35.54  Aligned_cols=61  Identities=5%  Similarity=-0.062  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  104 (175)
                      .|..+-..+.+.|++++|...|.+..+.. +.+...+..+-.++.+.|++++|...+++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34455555555666666666666554431 12233455555555555555555555555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.03  E-value=0.0083  Score=34.43  Aligned_cols=78  Identities=12%  Similarity=0.003  Sum_probs=55.9

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHH
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSF  152 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~  152 (175)
                      ...+..+-..+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...|+...  .| +...+..+-..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3466677777888889999998888888753 3356678888888888999999988888765  23 444555555544


Q ss_pred             Hh
Q 045063          153 LR  154 (175)
Q Consensus       153 ~~  154 (175)
                      .+
T Consensus        88 ~~   89 (91)
T 1na3_A           88 QK   89 (91)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.95  E-value=0.0045  Score=47.56  Aligned_cols=92  Identities=10%  Similarity=0.050  Sum_probs=70.5

Q ss_pred             HHHHHHhCCCcchHHHHHHHHHhc--C-CCCC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHh-----C-CCcch-H
Q 045063           47 QLFSYTRSRNFPATWALFCYMHST--C-LNLT----AYTFTPVLGACSALPAPERGKQVHALMIKG-----G-TDSEP-V  112 (175)
Q Consensus        47 li~~~~~~g~~~~a~~l~~~m~~~--~-~~~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~-~  112 (175)
                      .+..+.+.|++++|..++++..+.  . +-|+    ..+++.+...|...|++++|..++++...-     | -.|++ .
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            355666789999999999998753  1 2222    248888999999999999999999988732     2 24444 3


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          113 VKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       113 ~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +++.|-..|...|++++|..++++..
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            78999999999999999998888754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.95  E-value=0.006  Score=46.91  Aligned_cols=84  Identities=11%  Similarity=0.049  Sum_probs=60.6

Q ss_pred             CCCcchHHHHHHHHHhc---CCCCC---H-hhHHHHHHHHhcCCCchhHHHHHHHHHHh-----C-CCcch-HHHHHHHH
Q 045063           54 SRNFPATWALFCYMHST---CLNLT---A-YTFTPVLGACSALPAPERGKQVHALMIKG-----G-TDSEP-VVKTALMD  119 (175)
Q Consensus        54 ~g~~~~a~~l~~~m~~~---~~~~~---~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~-~~~~~li~  119 (175)
                      .|++++|..++++.++.   -+-|+   . .+++.|...|...|++++|..++++...-     | -.|++ .+++.|-.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            47788888888886542   22222   2 47888888888888888888888887732     2 24444 37888888


Q ss_pred             HHHhcCChHHHHHHHHhc
Q 045063          120 MYSKYGLLGESVEAFKEI  137 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m  137 (175)
                      .|...|++++|..++++.
T Consensus       391 ~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHH
Confidence            888888888888888764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.91  E-value=0.0053  Score=36.69  Aligned_cols=85  Identities=15%  Similarity=-0.035  Sum_probs=59.0

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC-CCcchHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG-TDSEPVVKTALM  118 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li  118 (175)
                      +...|..+-.+|.+.|++++|...|++..+... -+...|..+-.++.+.|++++|...+++..+.. -.++......+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~   84 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ   84 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence            456677888888889999999999998876532 234578888888888999999988888877531 123444444444


Q ss_pred             HHHHhcC
Q 045063          119 DMYSKYG  125 (175)
Q Consensus       119 ~~~~~~g  125 (175)
                      ..+.+.+
T Consensus        85 ~~l~~~~   91 (100)
T 3ma5_A           85 DAKLKAE   91 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            4444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.78  E-value=0.0078  Score=46.30  Aligned_cols=83  Identities=7%  Similarity=-0.038  Sum_probs=66.3

Q ss_pred             cCCCchhHHHHHHHHHHh--C-C---Ccch-HHHHHHHHHHHhcCChHHHHHHHHhcc-------CC---C-chhHHHHH
Q 045063           88 ALPAPERGKQVHALMIKG--G-T---DSEP-VVKTALMDMYSKYGLLGESVEAFKEIE-------FK---D-VVTWNALL  149 (175)
Q Consensus        88 ~~~~~~~a~~~~~~m~~~--~-~---~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~---~-~~~~~~li  149 (175)
                      ..|++++|..++++..+.  . +   .|++ .+++.|..+|...|++++|..++++..       .+   + ..+++.|-
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999999887742  1 1   3333 589999999999999999999998875       22   2 34699999


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 045063          150 SSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..|...|++++|..++++-.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999988643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.75  E-value=0.014  Score=37.13  Aligned_cols=112  Identities=6%  Similarity=-0.129  Sum_probs=85.3

Q ss_pred             hcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc----CCCchh
Q 045063           20 DALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA----LPAPER   94 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~----~~~~~~   94 (175)
                      .+-.++++.|.+.|++..+. +....  +-..|...+..+.|.+.|++..+.|   +...+..|-..+..    .+++++
T Consensus         5 ~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            5 GTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            33446788899999987653 44444  6677777778888999999987764   45566666666666    789999


Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccC
Q 045063           95 GKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEF  139 (175)
Q Consensus        95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~  139 (175)
                      |...+++..+.|   +...+..|-..|..    .+++++|.+.|+.--+
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence            999999988765   56677888888888    8999999999987543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.51  E-value=0.15  Score=37.33  Aligned_cols=142  Identities=6%  Similarity=-0.056  Sum_probs=80.2

Q ss_pred             hHHHHHhhhccC--C-CchhHHHHHHHHHhCC--CcchHHHHHHHHHhcCCCCCHhhHHHHHHHH----hcC---CCchh
Q 045063           27 VYTHQVFDEISH--G-DLSSLNSQLFSYTRSR--NFPATWALFCYMHSTCLNLTAYTFTPVLGAC----SAL---PAPER   94 (175)
Q Consensus        27 ~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~----~~~---~~~~~   94 (175)
                      ++|..+++++..  | +...|+.=-.++...|  +++++++.++....... -+..+|+.--..+    .+.   +++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            466666666542  3 4445666666666666  77777777777655422 1222444333333    333   56667


Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH--HHHHHHHhccC---CCchhHHHHHHHHHhcCC------hHHHHH
Q 045063           95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG--ESVEAFKEIEF---KDVVTWNALLSSFLRHGL------AKEAFG  163 (175)
Q Consensus        95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~---~~~~~~~~li~~~~~~g~------~~~a~~  163 (175)
                      +..+++.+.+.. +-+...|+.---...+.|.++  ++.++++.+.+   .|...|+.--..+.+.|+      ++++++
T Consensus       129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~  207 (306)
T 3dra_A          129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN  207 (306)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence            777777776543 345566666666666666666  66666666652   255556554444444454      566666


Q ss_pred             HHHHHHh
Q 045063          164 VFQAMTR  170 (175)
Q Consensus       164 ~~~~m~~  170 (175)
                      .+++.+.
T Consensus       208 ~~~~aI~  214 (306)
T 3dra_A          208 YVKDKIV  214 (306)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.42  E-value=0.012  Score=45.25  Aligned_cols=87  Identities=16%  Similarity=-0.003  Sum_probs=69.2

Q ss_pred             HHHHhcCCCchhHHHHHHHHHHh--C-C---Ccc-hHHHHHHHHHHHhcCChHHHHHHHHhcc-------CC----Cchh
Q 045063           83 LGACSALPAPERGKQVHALMIKG--G-T---DSE-PVVKTALMDMYSKYGLLGESVEAFKEIE-------FK----DVVT  144 (175)
Q Consensus        83 l~~~~~~~~~~~a~~~~~~m~~~--~-~---~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~----~~~~  144 (175)
                      +.-+.+.|++++|..++++..+.  . +   .|+ ..+++.+...|...|++++|..++++..       .+    -..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            45566788999999999988742  1 1   222 3589999999999999999999988765       22    2346


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          145 WNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       145 ~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++.|-..|...|++++|..++++-.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            8999999999999999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.39  E-value=0.16  Score=40.31  Aligned_cols=146  Identities=8%  Similarity=-0.061  Sum_probs=109.2

Q ss_pred             CCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCC----------cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063           23 PKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRN----------FPATWALFCYMHSTCLNLTAYTFTPVLGACSAL   89 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~   89 (175)
                      ...-++|.+.++++..  | +...|+.==.++.+.|+          ++++++.++.+.+... -+..+|..--..+.+.
T Consensus        42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence            3344567888887753  3 55667766666666666          8999999999977532 3566888888888888


Q ss_pred             C--CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC-ChHHHHHHHHhccCC---CchhHHHHHHHHHhc--------
Q 045063           90 P--APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG-LLGESVEAFKEIEFK---DVVTWNALLSSFLRH--------  155 (175)
Q Consensus        90 ~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~--------  155 (175)
                      +  +++++.+.++.+.+.. +-+-..|+.--....+.| .++++.+.++.+.+.   |...|+..-..+.+.        
T Consensus       121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence            8  5699999999999865 347778888888888888 899999999998754   666788776666653        


Q ss_pred             ------CChHHHHHHHHHHHh
Q 045063          156 ------GLAKEAFGVFQAMTR  170 (175)
Q Consensus       156 ------g~~~~a~~~~~~m~~  170 (175)
                            +.++++.+.+++...
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHh
Confidence                  456788887777654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.27  E-value=0.028  Score=37.01  Aligned_cols=71  Identities=8%  Similarity=0.036  Sum_probs=40.8

Q ss_pred             chhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhc-----------CChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCC
Q 045063           92 PERGKQVHALMIKGGTDS-EPVVKTALMDMYSKY-----------GLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGL  157 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~  157 (175)
                      +++|...|++.++.  .| +...|..+-.+|...           |++++|.+.|+...  .|+...|..-+..      
T Consensus        62 ~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------  133 (158)
T 1zu2_A           62 IQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------  133 (158)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------
Confidence            44666666666653  23 344666666666655           37777777777765  5655555444443      


Q ss_pred             hHHHHHHHHHHHh
Q 045063          158 AKEAFGVFQAMTR  170 (175)
Q Consensus       158 ~~~a~~~~~~m~~  170 (175)
                      .++|.++.-+...
T Consensus       134 ~~ka~el~~~~~~  146 (158)
T 1zu2_A          134 TAKAPQLHAEAYK  146 (158)
T ss_dssp             HHTHHHHHHHHHH
T ss_pred             HHhCHhccCcccc
Confidence            3445555444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.19  E-value=0.23  Score=36.78  Aligned_cols=144  Identities=6%  Similarity=-0.030  Sum_probs=104.9

Q ss_pred             hhHHHHHhhhccC---CCchhHHHHHHHHHhCCC--cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-chhHHHHH
Q 045063           26 YVYTHQVFDEISH---GDLSSLNSQLFSYTRSRN--FPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-PERGKQVH   99 (175)
Q Consensus        26 ~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-~~~a~~~~   99 (175)
                      ++++...++.+..   .+..+|+.=-..+.+.|+  ++++++.++.+.+.. +-|...|+.---.+.+.|. .+++.+.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            5677777777643   477788887777878774  789999999998763 3467788887777778887 48999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHHHHhc--------------CChHHHHHHHHhcc--CC-CchhHHHHHHHHHhc-------
Q 045063          100 ALMIKGGTDSEPVVKTALMDMYSKY--------------GLLGESVEAFKEIE--FK-DVVTWNALLSSFLRH-------  155 (175)
Q Consensus       100 ~~m~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~-------  155 (175)
                      ..+++..+ -|...|+..-..+.+.              +.++++.+.++...  .| |...|+-+-..+.+.       
T Consensus       169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            99998653 4666777766666554              45777888887765  45 777787655544444       


Q ss_pred             ----CChHHHHHHHHHHHhc
Q 045063          156 ----GLAKEAFGVFQAMTRE  171 (175)
Q Consensus       156 ----g~~~~a~~~~~~m~~~  171 (175)
                          +.++++++.++++.+.
T Consensus       248 ~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhh
Confidence                4577888888887653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.15  E-value=0.025  Score=46.19  Aligned_cols=41  Identities=10%  Similarity=0.063  Sum_probs=24.0

Q ss_pred             cCCCChhHHHH-Hhhhcc-CCCchhHHHHHHHHHhCCCcchHHHHH
Q 045063           21 ALPKRYVYTHQ-VFDEIS-HGDLSSLNSQLFSYTRSRNFPATWALF   64 (175)
Q Consensus        21 ~~~~~~~~a~~-~f~~~~-~~~~~~~~~li~~~~~~g~~~~a~~l~   64 (175)
                      ...+++++|.+ ++..++ ..   ....++..+.+.|..+.|+++.
T Consensus       610 ~~~~~~~~a~~~~l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~  652 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNVEGKD---SLTKIARFLEGQEYYEEALNIS  652 (814)
T ss_dssp             HHTTCHHHHHHHTGGGCCCHH---HHHHHHHHHHHTTCHHHHHHHC
T ss_pred             HHhCCHHHHHHHHHhcCCchH---HHHHHHHHHHhCCChHHheecC
Confidence            35677888877 654433 21   2266666666666666666544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.11  E-value=0.025  Score=46.20  Aligned_cols=44  Identities=5%  Similarity=-0.093  Sum_probs=20.7

Q ss_pred             hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHH
Q 045063           53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALM  102 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m  102 (175)
                      +.|++++|+++.+.+      .+...|..+-..+.+.++++.|...|.++
T Consensus       664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            344555555443322      23344555555555555555555555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.10  E-value=0.28  Score=36.54  Aligned_cols=144  Identities=9%  Similarity=-0.058  Sum_probs=95.9

Q ss_pred             ChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcc--------hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC--
Q 045063           25 RYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFP--------ATWALFCYMHSTCLNLTAYTFTPVLGACSALPA--   91 (175)
Q Consensus        25 ~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~--   91 (175)
                      +++++.+.++++.+   +|..+|+.--.++.+.|.++        ++++.++++.+... -|...|+.--..+.+.+.  
T Consensus       140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence            56778888887764   36667766666666655566        88888888877632 466678777777777765  


Q ss_pred             -----chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh--------------------HHHHHHHHhccC-------
Q 045063           92 -----PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL--------------------GESVEAFKEIEF-------  139 (175)
Q Consensus        92 -----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~-------  139 (175)
                           ++++.+.+.+.+... +-|...|+-+-..+.+.|.-                    .+..++...+..       
T Consensus       219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT  297 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred             cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence                 466777777776643 34666787777666666653                    334444444432       


Q ss_pred             --CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          140 --KDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       140 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                        +....+..|...|...|+.++|.++++.+.+
T Consensus       298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence              3455678888999999999999999999853

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.06  E-value=0.12  Score=40.30  Aligned_cols=43  Identities=5%  Similarity=-0.290  Sum_probs=27.4

Q ss_pred             HHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063           28 YTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHST   70 (175)
Q Consensus        28 ~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~   70 (175)
                      .+..+|++...  | ....|-..+.-+.+.|+.+.|.++|++....
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            35556666543  2 3445666666666777777888777777665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.00  E-value=0.031  Score=32.69  Aligned_cols=54  Identities=7%  Similarity=-0.052  Sum_probs=26.4

Q ss_pred             HHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063           50 SYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        50 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~  104 (175)
                      .+.+.|++++|...|++..+.. +-+.. .+..+-.++.+.|++++|...+++..+
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445555555555555554431 11223 444444555555555555555555554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=95.83  E-value=0.38  Score=35.85  Aligned_cols=127  Identities=8%  Similarity=-0.049  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP-APERGKQVHALMIKGGTDSEPVVKTALMDMYS  122 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  122 (175)
                      ++.+-....+....++|+++++++...+. -+..+|+.--..+...+ .++++..+++.+.+.. +-+..+|+.---.+.
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~  134 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            34444444455666799999999976532 34457777777777777 5899999999998754 346678888777777


Q ss_pred             hc-C-ChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChH--------HHHHHHHHHHhcc
Q 045063          123 KY-G-LLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAK--------EAFGVFQAMTRER  172 (175)
Q Consensus       123 ~~-g-~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g  172 (175)
                      +. + +++++.++++.+.+.   |...|+.-...+.+.|..+        ++++.++++.+.+
T Consensus       135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d  197 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD  197 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence            76 7 889999999998854   5566776555555555555        8888888887754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.74  E-value=0.047  Score=31.90  Aligned_cols=55  Identities=9%  Similarity=0.038  Sum_probs=46.1

Q ss_pred             HHHHhcCCCchhHHHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           83 LGACSALPAPERGKQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      -..+.+.|++++|...+++..+.. +.+.. .|..+-.+|.+.|++++|.+.|+...
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455678899999999999998764 23556 88889999999999999999999876

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.067  Score=43.98  Aligned_cols=121  Identities=8%  Similarity=-0.055  Sum_probs=74.8

Q ss_pred             hhhhhcCCCC-hhHHHHHhhhccCCCc--hh--HHHHHHHHHhCCCcc-hHHHHHHHHHhc------CCCCCHh------
Q 045063           16 ISIADALPKR-YVYTHQVFDEISHGDL--SS--LNSQLFSYTRSRNFP-ATWALFCYMHST------CLNLTAY------   77 (175)
Q Consensus        16 ll~~~~~~~~-~~~a~~~f~~~~~~~~--~~--~~~li~~~~~~g~~~-~a~~l~~~m~~~------~~~~~~~------   77 (175)
                      |+..+...++ ++.|..+|+++.+.+.  .+  ...+|..+.+.++-+ +|.++..+..+.      ...+...      
T Consensus       254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~  333 (754)
T 4gns_B          254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM  333 (754)
T ss_dssp             HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence            5666666666 5788889988865322  22  233444444443222 555666554321      1222111      


Q ss_pred             h-HHHHH----HHHhcCCCchhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           78 T-FTPVL----GACSALPAPERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        78 t-~~~ll----~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      . -..|+    +.|.+.|+++.|..+-.+...  +.|+. .+|-.|..+|.+.|+++.|.-.+..++
T Consensus       334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             CcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            0 01122    334567889999998888776  45664 599999999999999999999988886

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.46  E-value=0.011  Score=38.90  Aligned_cols=97  Identities=8%  Similarity=-0.071  Sum_probs=72.6

Q ss_pred             hcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCc----------chHHHHHHHHHhcCCCCC-HhhHHHHHHH
Q 045063           20 DALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNF----------PATWALFCYMHSTCLNLT-AYTFTPVLGA   85 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~----------~~a~~l~~~m~~~~~~~~-~~t~~~ll~~   85 (175)
                      ..+.+.+++|.+.++...+   .+...|+.+-.++.+.+++          ++|...|++..+.  .|+ ..+|..+-++
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a   89 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence            3455678888888888653   3777888888888888765          4888888887654  344 4588888888


Q ss_pred             HhcCC-----------CchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063           86 CSALP-----------APERGKQVHALMIKGGTDSEPVVKTALMDM  120 (175)
Q Consensus        86 ~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  120 (175)
                      +.+.|           ++++|.+.|++..+  +.|+...|..-+..
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~  133 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            88764           89999999999987  46777666555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.46  E-value=0.13  Score=30.34  Aligned_cols=64  Identities=6%  Similarity=-0.089  Sum_probs=43.6

Q ss_pred             CHhhHHHHHHHHhcCCC---chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063           75 TAYTFTPVLGACSALPA---PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF  139 (175)
Q Consensus        75 ~~~t~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  139 (175)
                      |...+..+-.++...++   .++|..++++..+.. +-+......+-..+.+.|++++|...|+.+.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44455555555543332   688888888887753 23455677777888888888888888888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.37  E-value=0.56  Score=37.26  Aligned_cols=118  Identities=6%  Similarity=-0.069  Sum_probs=89.8

Q ss_pred             hCCC-cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC----------chhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           53 RSRN-FPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA----------PERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        53 ~~g~-~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      +.|+ .++|++.++++..... -+...|+.-=.++.+.++          ++++.+.++.+.+.. +-+..+|+.---.+
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            4444 4588999999976522 234467665555555555          889999999998864 34677898888888


Q ss_pred             HhcC--ChHHHHHHHHhccC---CCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhcc
Q 045063          122 SKYG--LLGESVEAFKEIEF---KDVVTWNALLSSFLRHG-LAKEAFGVFQAMTRER  172 (175)
Q Consensus       122 ~~~g--~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g  172 (175)
                      .+.|  +++++.+.++.+.+   +|...|+.--..+.+.| ..+++++.+.++.+.+
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence            8899  67999999999873   47788888888888888 8899999998887654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.31  E-value=0.32  Score=32.53  Aligned_cols=126  Identities=7%  Similarity=-0.091  Sum_probs=70.1

Q ss_pred             cCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063           21 ALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHA  100 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~  100 (175)
                      ...|+++.|.++-+++  .+...|..|-....+.|+++-|...|....       .  |..+.--+...|+.+....+-.
T Consensus        16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D--~~~L~~Ly~~tg~~e~L~kla~   84 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH-------S--FDKLSFLYLVTGDVNKLSKMQN   84 (177)
T ss_dssp             HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C--HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C--HHHHHHHHHHhCCHHHHHHHHH
Confidence            3567777777776555  345567777777777777777777777651       1  1122222333444444333322


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          101 LMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       101 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      .-...|      -++.--..+.-.|+++++.+++.+..+..     .-.-.....|..+.|.++..++
T Consensus        85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence            222222      34555556667788888888887654322     1111123356667777777665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.99  E-value=0.26  Score=40.54  Aligned_cols=127  Identities=8%  Similarity=0.010  Sum_probs=78.8

Q ss_pred             hHHHHHHHHH----hCCC-cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC--CchhHHHHHHHHHH-----hCCCcc
Q 045063           43 SLNSQLFSYT----RSRN-FPATWALFCYMHSTCLNLTAYTFTPVLGACSALP--APERGKQVHALMIK-----GGTDSE  110 (175)
Q Consensus        43 ~~~~li~~~~----~~g~-~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~-----~~~~~~  110 (175)
                      +-|.|..++.    -.|+ .+.|.++|+++.......+.....+++..+.+.+  +++.+.-+.+.+..     ....+.
T Consensus       246 v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~  325 (754)
T 4gns_B          246 VNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPR  325 (754)
T ss_dssp             SSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence            3455544443    3455 4779999999876533222222334444444443  22333333333321     011111


Q ss_pred             -----------hHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          111 -----------PVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       111 -----------~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                                 ......-.+.+...|+++-|.++-+...  .| +-.+|..|..+|...|+++.|+-.++.+.
T Consensus       326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                       1233444566778999999999999876  45 67799999999999999999999999874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.86  E-value=0.19  Score=32.78  Aligned_cols=80  Identities=6%  Similarity=-0.103  Sum_probs=54.1

Q ss_pred             cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC---CchhHHHHHHHHHHhCCCc--chHHHHHHHHHHHhcCChHHHH
Q 045063           57 FPATWALFCYMHSTCLNLTAYTFTPVLGACSALP---APERGKQVHALMIKGGTDS--EPVVKTALMDMYSKYGLLGESV  131 (175)
Q Consensus        57 ~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~  131 (175)
                      +..+.+.|.+-...|. ++..+...+-.++++++   +.+++..+++...+.. .|  +...+=.+--+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3455566666555544 56666666677777777   5568888888888764 24  2333444555668899999999


Q ss_pred             HHHHhcc
Q 045063          132 EAFKEIE  138 (175)
Q Consensus       132 ~~~~~m~  138 (175)
                      +.++...
T Consensus        92 ~y~~~lL   98 (152)
T 1pc2_A           92 KYVRGLL   98 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.47  E-value=0.22  Score=29.81  Aligned_cols=67  Identities=13%  Similarity=-0.105  Sum_probs=51.0

Q ss_pred             CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC------CCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063           74 LTAYTFTPVLGACSALPAPERGKQVHALMIKGG------TDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK  140 (175)
Q Consensus        74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  140 (175)
                      .+..-+..|-..+.+.++++.|...++...+.-      -.+....+..+..+|.+.|+++.|...+++..+-
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            355566677788888899999999888877531      1245567888888888999999998888887654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.46  E-value=0.38  Score=28.68  Aligned_cols=25  Identities=12%  Similarity=0.133  Sum_probs=11.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHH
Q 045063          144 TWNALLSSFLRHGLAKEAFGVFQAM  168 (175)
Q Consensus       144 ~~~~li~~~~~~g~~~~a~~~~~~m  168 (175)
                      ++..|-.+|.+.|+++.|...+++.
T Consensus        48 i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A           48 VLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3444444444444444444444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.37  E-value=0.2  Score=37.77  Aligned_cols=61  Identities=11%  Similarity=0.265  Sum_probs=50.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh-----cccCC
Q 045063          115 TALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR-----ERVEF  175 (175)
Q Consensus       115 ~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p  175 (175)
                      ..+++.+...|+++++........  .| +...|..+|.++.+.|+..+|++.|++..+     -|+.|
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            456677788999999988777765  34 677999999999999999999999988744     37776

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=94.20  E-value=1.2  Score=32.89  Aligned_cols=148  Identities=8%  Similarity=-0.054  Sum_probs=99.1

Q ss_pred             cCCCChh-HHHHHhhhccC--C-CchhHHHHHHHHHhCCC----------cchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063           21 ALPKRYV-YTHQVFDEISH--G-DLSSLNSQLFSYTRSRN----------FPATWALFCYMHSTCLNLTAYTFTPVLGAC   86 (175)
Q Consensus        21 ~~~~~~~-~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~   86 (175)
                      .+.|.++ +|..+++.+..  | +...||.==..+...|.          +++++.+++.+... -+-+..+|+.--..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~PKny~aW~hR~wlL  118 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence            3445555 68888888754  3 34445443333333222          57888888888765 223566777777677


Q ss_pred             hcCCC--chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC-hHHHHHHHHhccC---CCchhHHHHHHHHHhc-----
Q 045063           87 SALPA--PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL-LGESVEAFKEIEF---KDVVTWNALLSSFLRH-----  155 (175)
Q Consensus        87 ~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-----  155 (175)
                      .+.+.  ++++.++++.+.+.. +-|-..|+----.....|. ++++.+.++.+.+   .|...|+..-..+.+.     
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred             hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence            77774  689999999998764 3577788877777778887 5888888888763   3667787766555544     


Q ss_pred             ---------CChHHHHHHHHHHHh
Q 045063          156 ---------GLAKEAFGVFQAMTR  170 (175)
Q Consensus       156 ---------g~~~~a~~~~~~m~~  170 (175)
                               +.++++++.+.+...
T Consensus       198 ~~~~~~~~~~~~~eEle~~~~ai~  221 (331)
T 3dss_A          198 SGPQGRLPENVLLKELELVQNAFF  221 (331)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHHH
Confidence                     346777777777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.94  E-value=0.47  Score=30.92  Aligned_cols=78  Identities=8%  Similarity=-0.081  Sum_probs=56.9

Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC---ChHHHHHHHHhccCCC-----chhHHHHHHHHHhcCChHHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG---LLGESVEAFKEIEFKD-----VVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      ...+++-|.+-.+.+. ++..+.-.+.-++++++   +++++..+++...+.+     ...+-.|--+|.+.|+.++|.+
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3455556665555444 78888888888899988   6778998888876443     2234445556799999999999


Q ss_pred             HHHHHHh
Q 045063          164 VFQAMTR  170 (175)
Q Consensus       164 ~~~~m~~  170 (175)
                      .++.+.+
T Consensus        93 y~~~lL~   99 (152)
T 1pc2_A           93 YVRGLLQ   99 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998865

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=93.78  E-value=0.62  Score=28.08  Aligned_cols=79  Identities=11%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      -..++|..+-+.+...+.  ...+--+-+....+.|++++|..+.+...-||...|-+|-.  .|.|..+++...+.++.
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG   95 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            356788888777776543  22233334466788999999999999888899999988865  47888888888777776


Q ss_pred             hcc
Q 045063          170 RER  172 (175)
Q Consensus       170 ~~g  172 (175)
                      ..|
T Consensus        96 ~sg   98 (115)
T 2uwj_G           96 GSS   98 (115)
T ss_dssp             TCS
T ss_pred             hCC
Confidence            554

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=93.72  E-value=0.64  Score=28.06  Aligned_cols=79  Identities=16%  Similarity=0.252  Sum_probs=56.3

Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      -..++|.-+-+.+...+.  ...+--+-+....+.|++++|..+.+...-||...|-+|-.  .|.|..+++...+.++.
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   96 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA   96 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            356778888777776543  22233333466778999999999999888889999988765  47787788777776665


Q ss_pred             hcc
Q 045063          170 RER  172 (175)
Q Consensus       170 ~~g  172 (175)
                      ..|
T Consensus        97 ~sg   99 (116)
T 2p58_C           97 RSQ   99 (116)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.61  E-value=0.94  Score=29.59  Aligned_cols=112  Identities=10%  Similarity=0.093  Sum_probs=73.3

Q ss_pred             CCCchhHHHHHHHHHhCCCc------chHHHHHHHHHhcCCCCCHh----hHHHHHH---HHhcCCCchhHHHHHHHHHH
Q 045063           38 HGDLSSLNSQLFSYTRSRNF------PATWALFCYMHSTCLNLTAY----TFTPVLG---ACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        38 ~~~~~~~~~li~~~~~~g~~------~~a~~l~~~m~~~~~~~~~~----t~~~ll~---~~~~~~~~~~a~~~~~~m~~  104 (175)
                      ..|..+|=..+.-.-+.|+.      +...++|++...+ ++|+..    .|.-|.-   .+...+++++|+++|+.+++
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34667777777777777888      7778888877665 666532    1221111   11223788899999998876


Q ss_pred             hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHH
Q 045063          105 GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSS  151 (175)
Q Consensus       105 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~  151 (175)
                      .+-.- ...|......-.+.|++..|.+++..-.   ..+....++.|+.
T Consensus        89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n  137 (161)
T 4h7y_A           89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN  137 (161)
T ss_dssp             HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred             HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence            53333 6778888888888999999988888754   2244445555544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.87  E-value=0.021  Score=44.66  Aligned_cols=142  Identities=10%  Similarity=0.005  Sum_probs=103.9

Q ss_pred             CcchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063           12 AKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA   91 (175)
Q Consensus        12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~   91 (175)
                      .|+-|-.+..+.+.+.+|.+.|  ++..|...|.-+|.+..+.|.+++-...+.-.++..  -+...=+.|+-++++.++
T Consensus        56 VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~r  131 (624)
T 3lvg_A           56 VWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR  131 (624)
T ss_dssp             CSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCS
T ss_pred             HHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCc
Confidence            4455666777777777766655  345677888999999999999988887665554442  233344588889999998


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc------------------------CCCchhHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE------------------------FKDVVTWNA  147 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~------------------------~~~~~~~~~  147 (175)
                      +.+-++++.       .||..-...+-+-+...|.++.|.-+|..+.                        ..++.||-.
T Consensus       132 L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe  204 (624)
T 3lvg_A          132 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE  204 (624)
T ss_dssp             SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred             HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence            877665532       4676667777788888888888888887765                        127889999


Q ss_pred             HHHHHHhcCChHHHHHH
Q 045063          148 LLSSFLRHGLAKEAFGV  164 (175)
Q Consensus       148 li~~~~~~g~~~~a~~~  164 (175)
                      +-.+|+..+.+.-|...
T Consensus       205 V~~ACvd~~EfrLAqic  221 (624)
T 3lvg_A          205 VCFACVDGKEFRLAQMC  221 (624)
T ss_dssp             HTHHHHHSCTTTTTTHH
T ss_pred             HHHHHhCchHHHHHHHh
Confidence            99999999988776543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.40  E-value=0.79  Score=34.54  Aligned_cols=67  Identities=10%  Similarity=-0.031  Sum_probs=44.8

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH-----hCCCcchHH
Q 045063           46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK-----GGTDSEPVV  113 (175)
Q Consensus        46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~  113 (175)
                      .++..+...|++++|.......... -+.+...+..+|.++.+.|+..+|.+.|+.+.+     .|+.|+..+
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3445566677777777777776544 334556777777777777777777777777653     377776654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=91.98  E-value=3  Score=31.31  Aligned_cols=130  Identities=8%  Similarity=-0.059  Sum_probs=79.9

Q ss_pred             CCchhHHHHHHHHHhC--C---CcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHh----cCC-CchhHHHHHHHHHH---
Q 045063           39 GDLSSLNSQLFSYTRS--R---NFPATWALFCYMHSTCLNLTAY-TFTPVLGACS----ALP-APERGKQVHALMIK---  104 (175)
Q Consensus        39 ~~~~~~~~li~~~~~~--g---~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~----~~~-~~~~a~~~~~~m~~---  104 (175)
                      .+...|...+.+....  +   ++.+|..+|++..+.  .|+.. .|..+--++.    ..+ .......+-..+..   
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            4777888888776542  2   346889999988654  34422 3332222221    111 11122221111111   


Q ss_pred             -hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          105 -GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       105 -~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                       ..-+.+...|..+...+...|++++|...+++..  .|+...|..+-..+.-.|+.++|.+.|++-.+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence             1225566788888777777899999999999876  45555566666777889999999999887654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=91.75  E-value=1.3  Score=32.13  Aligned_cols=79  Identities=9%  Similarity=-0.026  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHhCCCcc---hHHHHHHHHHHHhc-----CChHHHHHHHHhcc--CC--CchhHHHHHHHHHhc-CChH
Q 045063           93 ERGKQVHALMIKGGTDSE---PVVKTALMDMYSKY-----GLLGESVEAFKEIE--FK--DVVTWNALLSSFLRH-GLAK  159 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~--~~--~~~~~~~li~~~~~~-g~~~  159 (175)
                      +.+...+++..+  +.|+   -..|+.+...|.+.     |+.++|.+.|++-.  .|  +..++..+-..+++. |+.+
T Consensus       180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            455555555555  3455   45788888888884     89999999988875  44  477788888888774 8888


Q ss_pred             HHHHHHHHHHhccc
Q 045063          160 EAFGVFQAMTRERV  173 (175)
Q Consensus       160 ~a~~~~~~m~~~g~  173 (175)
                      .+.+.+++-.....
T Consensus       258 ~a~~~L~kAL~a~p  271 (301)
T 3u64_A          258 GFDEALDRALAIDP  271 (301)
T ss_dssp             HHHHHHHHHHHCCG
T ss_pred             HHHHHHHHHHcCCC
Confidence            88888888776543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=91.52  E-value=0.9  Score=34.14  Aligned_cols=72  Identities=13%  Similarity=-0.031  Sum_probs=57.5

Q ss_pred             CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHH
Q 045063           73 NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWN  146 (175)
Q Consensus        73 ~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~  146 (175)
                      +.+..+|..+-..+...|++++|.+.+++....+  |+...|..+-..+.-.|++++|.+.+++..  .|...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence            4566677777666666799999999999999875  787788788888899999999999998865  56555543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.48  E-value=2  Score=28.10  Aligned_cols=98  Identities=9%  Similarity=0.008  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHhcCCCc------hhHHHHHHHHHHhCCCcchH-HHHHHHHHH------HhcCChHHHHHHHHhccC---C
Q 045063           77 YTFTPVLGACSALPAP------ERGKQVHALMIKGGTDSEPV-VKTALMDMY------SKYGLLGESVEAFKEIEF---K  140 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~li~~~------~~~g~~~~a~~~~~~m~~---~  140 (175)
                      .+|-..+.-.-+.|++      ++.+.+|++.... ++|+.. .|...|..+      ...++.++|.++|+.+..   .
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKk   92 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKK   92 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHH
Confidence            3666666666666777      7778888877764 566532 233333222      345899999999998852   2


Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063          141 DVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF  175 (175)
Q Consensus       141 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  175 (175)
                      =...|-..-.--.+.|++.+|.+++..-...|-+|
T Consensus        93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            24456666666678999999999998776655443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.22  E-value=1.2  Score=28.01  Aligned_cols=81  Identities=7%  Similarity=-0.080  Sum_probs=52.2

Q ss_pred             CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchh---HHHHHHHHHHhCCCc-chH-HHHHHHHHHHhcCChHHH
Q 045063           56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPER---GKQVHALMIKGGTDS-EPV-VKTALMDMYSKYGLLGES  130 (175)
Q Consensus        56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~~-~~~-~~~~li~~~~~~g~~~~a  130 (175)
                      .+..+.+.|.+....|. |+..+-..+-.++.++.....   +..+++.+.+.+ .| ... ..=.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            34455566665555444 666666666677777776655   777777776643 23 222 223344677899999999


Q ss_pred             HHHHHhcc
Q 045063          131 VEAFKEIE  138 (175)
Q Consensus       131 ~~~~~~m~  138 (175)
                      .+.++.+.
T Consensus        94 ~~~~~~lL  101 (126)
T 1nzn_A           94 LKYVRGLL  101 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888876

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.89  E-value=1.7  Score=26.29  Aligned_cols=45  Identities=9%  Similarity=0.116  Sum_probs=24.2

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +.+.-+..+....+.|+..+..+-+.++.|.+++..|.++|+.++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            334444444444455555555555555555555555555555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=90.82  E-value=1.7  Score=31.57  Aligned_cols=76  Identities=8%  Similarity=-0.033  Sum_probs=39.8

Q ss_pred             chhHHHHHHHHHhC-----CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc-CCCchhHHHHHHHHHHhCCC--cchH
Q 045063           41 LSSLNSQLFSYTRS-----RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA-LPAPERGKQVHALMIKGGTD--SEPV  112 (175)
Q Consensus        41 ~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~--~~~~  112 (175)
                      -..|..+...|.+.     |+.+.|.+.|++-++-+..-+..++...-..++. .++.+++.+.+++.......  |+..
T Consensus       199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~  278 (301)
T 3u64_A          199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK  278 (301)
T ss_dssp             HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred             CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence            34566666666663     6666666666665443221123333344444555 36666666666666654443  4444


Q ss_pred             HHHH
Q 045063          113 VKTA  116 (175)
Q Consensus       113 ~~~~  116 (175)
                      ..+.
T Consensus       279 lan~  282 (301)
T 3u64_A          279 LLVI  282 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.45  E-value=3  Score=36.08  Aligned_cols=143  Identities=9%  Similarity=0.030  Sum_probs=89.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC---------------------
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL---------------------   74 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~---------------------   74 (175)
                      ++..+.+.+.++.+.++..-.++..... =.+-.+|...|++++|.+.|.+.-. |+..                     
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~~~~~~~~-yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~  895 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ  895 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHSCCCHHHH-HHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred             HHHHHHHhhhHHHHHHHhhhccCCcHHH-HHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccc
Confidence            4445555666666666554444333222 2344667788999999999977421 1111                     


Q ss_pred             --CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc----hHHHHHHHHHHHhcCChHHHHHHHHhccCCCc--hhHH
Q 045063           75 --TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE----PVVKTALMDMYSKYGLLGESVEAFKEIEFKDV--VTWN  146 (175)
Q Consensus        75 --~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~  146 (175)
                        -..=|.-++.-+.+.+.++.+.++-...++..-.-+    ...|..+..++...|++++|...+-.++.+..  ....
T Consensus       896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr  975 (1139)
T 4fhn_B          896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL  975 (1139)
T ss_dssp             CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence              112366677778888888888887776665422111    23688999999999999999999887764422  2355


Q ss_pred             HHHHHHHhcCChHH
Q 045063          147 ALLSSFLRHGLAKE  160 (175)
Q Consensus       147 ~li~~~~~~g~~~~  160 (175)
                      .||...|..|..+.
T Consensus       976 ~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          976 DFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHHHHHHCCHHH
T ss_pred             HHHHHHHhCCChhh
Confidence            56666665555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.16  E-value=2.2  Score=24.93  Aligned_cols=64  Identities=5%  Similarity=-0.077  Sum_probs=40.3

Q ss_pred             CchhHHHHHHHHHhCCC---cchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045063           40 DLSSLNSQLFSYTRSRN---FPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKG  105 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~  105 (175)
                      +...+..+-.++...++   .++|..++++..+.  .|+. .....+-..+.+.|++++|...|+.+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44455555555543333   57777777777553  3333 35666666777788888888888877764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=88.99  E-value=3.7  Score=27.41  Aligned_cols=143  Identities=8%  Similarity=-0.055  Sum_probs=76.6

Q ss_pred             hhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHH
Q 045063           18 IADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQ   97 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~   97 (175)
                      ..+++.+..+....+.+.+..++...-...+.++.+.|+. ++...+.++.+.   ++...-...+.++.+.++.+....
T Consensus        41 ~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~  116 (211)
T 3ltm_A           41 YALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVALGQIGDERAVEP  116 (211)
T ss_dssp             HHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHH
T ss_pred             HHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHHHH
Confidence            3333344444444444444455555555566666666553 334444444322   455555555666666666444433


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           98 VHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        98 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +.. +.+   .++..+-...+.+.++.|..+....+...+..+|..+-...+.++.+.+. +.+...+.++.
T Consensus       117 L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l  183 (211)
T 3ltm_A          117 LIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA  183 (211)
T ss_dssp             HHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred             HHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence            333 222   35555666666777777766555555555556666666666666676665 44555555544

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A

Probab=88.82  E-value=5.4  Score=29.09  Aligned_cols=61  Identities=16%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHHHHhcCC--hHHHHHHHHHHHhccc
Q 045063          113 VKTALMDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSSFLRHGL--AKEAFGVFQAMTRERV  173 (175)
Q Consensus       113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~  173 (175)
                      ..+.++.=|...|+.++|.+.++++..|.   .+++.++..++-+.++  .+.+..++.++...|+
T Consensus       168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~  233 (307)
T 2zu6_B          168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST  233 (307)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence            45788888889999999999999998772   3345556666555543  4556778888876664

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=88.77  E-value=0.91  Score=28.60  Aligned_cols=61  Identities=7%  Similarity=0.012  Sum_probs=41.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCC--cchHHHHHHHHHhcCCCCCH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRN--FPATWALFCYMHSTCLNLTA   76 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~~~~   76 (175)
                      +|.-|...|+.++|...++++..|.   ..+...+..++-+.++  .+.+.+++..+...|+-+..
T Consensus        13 ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~   78 (129)
T 2nsz_A           13 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID   78 (129)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence            6777777888888888888887662   3345566666666542  35677777777766654444

>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3

Probab=88.14  E-value=1.2  Score=26.47  Aligned_cols=37  Identities=8%  Similarity=-0.026  Sum_probs=28.5

Q ss_pred             CChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchH
Q 045063           24 KRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPAT   60 (175)
Q Consensus        24 ~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a   60 (175)
                      ...+.|.++++.++.++..+|..++.++.+.|...-|
T Consensus        51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La   87 (97)
T 3ygs_P           51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA   87 (97)
T ss_dssp             CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred             ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence            5778888888888888888888888888776654444

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=88.07  E-value=3.7  Score=26.26  Aligned_cols=57  Identities=7%  Similarity=0.074  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLS  150 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~  150 (175)
                      +...-+..+....+.|+..+..+-+.++.|.+|+..|.++|+.++.   +...+|..+++
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq  130 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            3444444454556677777777777777777777777777777662   23334665554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=87.84  E-value=4.3  Score=26.82  Aligned_cols=146  Identities=8%  Similarity=-0.053  Sum_probs=91.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      .+.++++.+..+....+.+.+..++...-...+.++.+.|+. ++...+.++...   ++...-...+.++.+.++.+..
T Consensus        34 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~  109 (201)
T 3ltj_A           34 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVALGQIGDERAV  109 (201)
T ss_dssp             HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGH
T ss_pred             HHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHH
Confidence            344444555555556666666667777777777777777764 444455554433   5666666777777777776554


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..+...+ +   .++..+-...+.+.++.|+-+....+...+..+|..+-...+.++.+.|. +.+...+.++.+
T Consensus       110 ~~L~~~l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~  179 (201)
T 3ltj_A          110 EPLIKAL-K---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE  179 (201)
T ss_dssp             HHHHHHT-T---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred             HHHHHHH-c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence            4444433 2   45666666777788888876666666666666777777777777777776 455555555543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.33  E-value=2.9  Score=31.93  Aligned_cols=94  Identities=7%  Similarity=-0.131  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHh---CCCcchH----H
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKG---GTDSEPV----V  113 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~----~  113 (175)
                      ++..+-.-|.+.|++++|.+.|.+++.....+.  ...+-.++..+...+++..+.....+....   +..|+..    .
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            577889999999999999999999987633333  347888889999999999999999887632   3233322    1


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          114 KTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       114 ~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      |..++  +...+++.+|.+.|-+..
T Consensus       213 ~~gl~--~l~~r~f~~Aa~~f~e~~  235 (429)
T 4b4t_R          213 YYGIH--CLAVRNFKEAAKLLVDSL  235 (429)
T ss_dssp             HHHHG--GGGTSCHHHHHHHHHHHH
T ss_pred             HHHHH--HHHhChHHHHHHHHHHHh
Confidence            22222  235788998888776643

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=86.24  E-value=4.5  Score=25.34  Aligned_cols=74  Identities=8%  Similarity=0.016  Sum_probs=33.3

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC--hHHHHHHHHhccCCCchhHHHHHHHHH
Q 045063           79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL--LGESVEAFKEIEFKDVVTWNALLSSFL  153 (175)
Q Consensus        79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~  153 (175)
                      ...+++=|...|+.++|.+.++++.... -.+..+...+..+.-+.++  .+.+..++..+...+..+-+.+..|+.
T Consensus        10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~   85 (129)
T 2nsz_A           10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE   85 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence            3445555555566666665555553111 1112233333344333321  233455555554455555555555443

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=84.43  E-value=1.1  Score=29.17  Aligned_cols=61  Identities=7%  Similarity=0.012  Sum_probs=40.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCC--cchHHHHHHHHHhcCCCCCH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRN--FPATWALFCYMHSTCLNLTA   76 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~~~~   76 (175)
                      +|.-|...|+.++|...++++..|.   ..+...+..++-+.++  -+.+.+++..+...|+-+..
T Consensus        15 lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~   80 (152)
T 2ion_A           15 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID   80 (152)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence            6777777888888888888887652   3345566666666432  34677777777766654444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.98  E-value=6.6  Score=25.35  Aligned_cols=64  Identities=14%  Similarity=0.040  Sum_probs=37.8

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063          110 EPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV  173 (175)
Q Consensus       110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  173 (175)
                      +......-++.....|+-|.-.++..++.   +++....-.+-.+|.+.|+..+|.+++++--+.|+
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            44445555566666666666666666632   23444455555666666666666666666666654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=83.92  E-value=7.5  Score=25.91  Aligned_cols=101  Identities=11%  Similarity=0.053  Sum_probs=72.8

Q ss_pred             HHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063           50 SYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE  129 (175)
Q Consensus        50 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  129 (175)
                      --.+.|+++.|+++-+++      -+...|..|-+...+.|+++.|...|+....         +..+.-.|.-.|+.++
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            345789999999998876      4677999999999999999999999997642         4556666777788777


Q ss_pred             HHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063          130 SVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQA  167 (175)
Q Consensus       130 a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  167 (175)
                      ..++-+.-...+  -+|.-..++.-.|+++++.++|.+
T Consensus        79 L~kla~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           79 LSKMQNIAQTRE--DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            666544433221  244555556666777777777655

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=82.94  E-value=4.2  Score=26.31  Aligned_cols=77  Identities=9%  Similarity=0.026  Sum_probs=42.6

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC--hHHHHHHHHhccCCCchhHHHHHHHHHhc
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL--LGESVEAFKEIEFKDVVTWNALLSSFLRH  155 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~~~  155 (175)
                      ....+++=|...++.++|.+.++++.... -.+..+...+..+.-+.++  .+.+..++..+...+..+-+.+..|+.+.
T Consensus        11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v   89 (152)
T 2ion_A           11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI   89 (152)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence            45566666666777777777777664211 1123344444455444322  34456666666666666666666665543

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=82.37  E-value=7.4  Score=28.67  Aligned_cols=90  Identities=11%  Similarity=-0.071  Sum_probs=59.7

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAY---TFTPVLGACSA   88 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~   88 (175)
                      +|.-|...|++++|...++++..|.   ..+...+..++-+.. .-+.+..++..+.+.|+-+...   -|..++..+-.
T Consensus        17 ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~D   96 (339)
T 1ug3_A           17 IIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAED   96 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChH
Confidence            7888888999999999999998764   233444444444432 2356777888887666544443   35555555554


Q ss_pred             CC-CchhHHHHHHHHHHh
Q 045063           89 LP-APERGKQVHALMIKG  105 (175)
Q Consensus        89 ~~-~~~~a~~~~~~m~~~  105 (175)
                      .. +.+.|...+..+...
T Consensus        97 l~lDiP~a~~~La~~v~~  114 (339)
T 1ug3_A           97 MEIDIPHVWLYLAELVTP  114 (339)
T ss_dssp             HTTTCTTHHHHHHHHHGG
T ss_pred             hhcCccchHHHHHHHHHH
Confidence            33 788888888888743

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.13  E-value=8  Score=24.97  Aligned_cols=61  Identities=8%  Similarity=0.095  Sum_probs=48.6

Q ss_pred             CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063           75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE  136 (175)
Q Consensus        75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  136 (175)
                      +..-+...++.....|+-++...+...+.. +.+|+....-.+..+|.+.|+..+|.+++.+
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~  150 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE  150 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            444566778888888888888888888544 3567888888999999999999999888776

>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A

Probab=81.57  E-value=2.4  Score=24.79  Aligned_cols=35  Identities=14%  Similarity=0.001  Sum_probs=24.3

Q ss_pred             CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCC
Q 045063           22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRN   56 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~   56 (175)
                      .....+.|.++++.++.++..+|..++.++.+.|.
T Consensus        48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~   82 (94)
T 2p1h_A           48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY   82 (94)
T ss_dssp             SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence            35666677777777777777777777777766654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=81.44  E-value=4.8  Score=26.54  Aligned_cols=60  Identities=3%  Similarity=-0.141  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH-------hhHHHHHHHHhcCCCchhHHHHHHHHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA-------YTFTPVLGACSALPAPERGKQVHALMI  103 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~-------~t~~~ll~~~~~~~~~~~a~~~~~~m~  103 (175)
                      +---+..+...|.++.|.-+.+-.... +..|+.       .++..+-+++...+++..|...|++..
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            344456666677777777666664432 222331       245555667777777777777777743

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=81.44  E-value=6.9  Score=25.54  Aligned_cols=146  Identities=8%  Similarity=0.021  Sum_probs=74.2

Q ss_pred             hhhhcCCCChhHHHHHhhhcc-C---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063           17 SIADALPKRYVYTHQVFDEIS-H---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL   89 (175)
Q Consensus        17 l~~~~~~~~~~~a~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~   89 (175)
                      +...+..|+.+.+..+++.-. .   .+...++.|..+. +.|+.    ++.+.+.+.|..++..   -.+. +...+..
T Consensus         9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~   82 (201)
T 3hra_A            9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDI----EIAKALIDRGADINLQNSISDSP-YLYAGAQ   82 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred             HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCCH----HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHc
Confidence            444566788888888887654 2   2334445555444 45553    3444455556665543   2333 3344455


Q ss_pred             CCchhHHHHHHHHHHhCCCcch---HHHHHHHHHHHhcCChHHHHHHHHhc-c---CCCchhHHHHHHHHHhcCC-hHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEP---VVKTALMDMYSKYGLLGESVEAFKEI-E---FKDVVTWNALLSSFLRHGL-AKEA  161 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m-~---~~~~~~~~~li~~~~~~g~-~~~a  161 (175)
                      |+.+.+..+++.   .+..++.   .-. +.+...++.|+.+-+..+++.- .   .+|..-++.|..+. ..|+ ...-
T Consensus        83 ~~~~~~~~Ll~~---~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~  157 (201)
T 3hra_A           83 GRTEILAYMLKH---ATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLY  157 (201)
T ss_dssp             TCHHHHHHHHHH---SCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHH
T ss_pred             CCHHHHHHHHhc---cCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhH
Confidence            666555544432   2222222   122 2344456778888777777764 2   22333444555443 3333 2222


Q ss_pred             HHHHHHHHhccc
Q 045063          162 FGVFQAMTRERV  173 (175)
Q Consensus       162 ~~~~~~m~~~g~  173 (175)
                      .++++-+.+.|.
T Consensus       158 ~~~v~~Ll~~ga  169 (201)
T 3hra_A          158 QDIVKLLMENGA  169 (201)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCC
Confidence            444455555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.73  E-value=16  Score=27.69  Aligned_cols=92  Identities=13%  Similarity=0.017  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-----hhHHHHHHHHhcCCCchhHHHHHHHHHH--hCCCcchHHHHHHH
Q 045063           46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTA-----YTFTPVLGACSALPAPERGKQVHALMIK--GGTDSEPVVKTALM  118 (175)
Q Consensus        46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li  118 (175)
                      -+..-|...|++.+|.+++.++.+.--+.|.     ..+..-+..+...++..++.+.+.....  ..+.+++.+...+=
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            5788899999999999999999875222222     2566677888899999999999988774  23334443332221


Q ss_pred             ----HHHH-hcCChHHHHHHHHhc
Q 045063          119 ----DMYS-KYGLLGESVEAFKEI  137 (175)
Q Consensus       119 ----~~~~-~~g~~~~a~~~~~~m  137 (175)
                          -.+. ..++|..|...|-+.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHH
Confidence                2234 678888887766554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=80.62  E-value=11  Score=25.80  Aligned_cols=146  Identities=10%  Similarity=0.030  Sum_probs=64.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063           16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL   89 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~   89 (175)
                      .|...+..|+.+.+..+++.-..+   +...++.+..+ ++.|+.    ++++.+.+.|..++..   -++.+ ...++.
T Consensus        42 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~  115 (285)
T 1wdy_A           42 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AIAGSV----KLLKLFLSKGADVNECDFYGFTAF-MEAAVY  115 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCBCTTCCBHH-HHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCccCcccCCHH-HHHHHh
Confidence            455555666777666666653322   22223333333 233443    3334444455544432   22233 333344


Q ss_pred             CCchhHHHHHHHHHHhCCCcchHH------------HHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVV------------KTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFL  153 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~------------~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~  153 (175)
                      |+.+    +.+.+.+.|..++...            -.+.+...+..|+.+-+..+++...    .+|..-++.+..+ +
T Consensus       116 ~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~  190 (285)
T 1wdy_A          116 GKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-L  190 (285)
T ss_dssp             TCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-H
T ss_pred             CCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-H
Confidence            4433    3444445555443220            1134445566777777777776522    1222233333333 3


Q ss_pred             hcCChHHHHHHHHHHHhcc
Q 045063          154 RHGLAKEAFGVFQAMTRER  172 (175)
Q Consensus       154 ~~g~~~~a~~~~~~m~~~g  172 (175)
                      ..|+.....++++-+.+.|
T Consensus       191 ~~~~~~~~~~i~~~Ll~~g  209 (285)
T 1wdy_A          191 LSSDDSDVEAITHLLLDHG  209 (285)
T ss_dssp             HCSCTTTHHHHHHHHHHTT
T ss_pred             HccccchHHHHHHHHHHcC
Confidence            3444333344444444444

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=80.48  E-value=10  Score=25.14  Aligned_cols=138  Identities=8%  Similarity=-0.023  Sum_probs=96.6

Q ss_pred             CCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHH
Q 045063           23 PKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALM  102 (175)
Q Consensus        23 ~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m  102 (175)
                      .++.+....+.+.+..++...-...+..+.+.|. .++...+.++...   ++...-...+.++.+.+..+....+...+
T Consensus        15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l   90 (211)
T 3ltm_A           15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKAL   90 (211)
T ss_dssp             -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred             hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence            4566777777777888888888888899998887 4555555555543   56666667777888878765555554433


Q ss_pred             HHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          103 IKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       103 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                       +   .++..+-...+.+.++.|+.+....+.+.+..+|...-...+.++.+.|.. .+...+.++.
T Consensus        91 -~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l  152 (211)
T 3ltm_A           91 -K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKAL  152 (211)
T ss_dssp             -T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHT
T ss_pred             -c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence             2   467777778888889999877777777777778877777778888887764 3444444443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=80.17  E-value=11  Score=26.45  Aligned_cols=140  Identities=8%  Similarity=-0.066  Sum_probs=66.4

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~~~~   92 (175)
                      .|...+..|+.+.+..+++.-..++...-.+.+..-++.|+.+-+.-    +.+.|..++..   -++.| ...+..|..
T Consensus        34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~  108 (285)
T 3kea_A           34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTAL-YYAVDSGNM  108 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHH-HHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHH-HHHHHcCCH
Confidence            45555567777777777776433322222233334445565443333    33345544432   22333 333444554


Q ss_pred             hhHHHHHHHHHHhCCCcchHH---HHHHHHHHHhcCChHHHHHHHHhccCC-Cc-hhHHHHHHHHHhcCChHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVV---KTALMDMYSKYGLLGESVEAFKEIEFK-DV-VTWNALLSSFLRHGLAKEAFGVF  165 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~-~~-~~~~~li~~~~~~g~~~~a~~~~  165 (175)
                      +-+    +.+.+.|..++...   |.+.+...+..|..+-+..+++.-... +. .-++.|. ..+..|+.+.+.-++
T Consensus       109 ~~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          109 QTV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIH-ITIKNGHVDMMILLL  181 (285)
T ss_dssp             HHH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHH-HHHHTTCHHHHHHHH
T ss_pred             HHH----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHH-HHHHcChHHHHHHHH
Confidence            433    33344455444332   234555556677776666666653322 22 2233333 335566655444444

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=80.13  E-value=9.1  Score=24.31  Aligned_cols=60  Identities=10%  Similarity=0.082  Sum_probs=31.5

Q ss_pred             HHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063           67 MHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        67 m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  127 (175)
                      +++.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.=--++.+...|-+
T Consensus        13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv   72 (145)
T 2fe3_A           13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV   72 (145)
T ss_dssp             HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred             HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence            445566555432 223334444455566666666666655445555444445555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.13
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.98
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.91
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.85
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.49
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.48
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.42
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.36
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.29
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.26
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.12
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.12
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.02
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.02
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.9
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.89
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.87
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.86
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.6
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.56
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.53
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.46
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.43
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.23
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.07
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.93
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.91
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.89
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.74
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.67
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.58
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.46
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.35
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.06
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	92.8
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.56
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	87.53
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	85.7
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	84.89
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	83.94
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	80.65

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.7e-09  Score=78.39  Aligned_cols=153  Identities=8%  Similarity=0.015  Sum_probs=119.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+...|++++|...|++...   .+...+..+-.++.+.|++++|.+.|++..+.. +-+..++..+-..+.+.|+.
T Consensus       209 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~  287 (388)
T d1w3ba_         209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSV  287 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCH
T ss_pred             HhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence            56677788888888888887653   355667778888888888888888888876542 22345778888888888889


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|.+.++..... .+.+...+..+...|.+.|++++|.+.|++..+  | +...|..+-..|.+.|++++|...|++..
T Consensus       288 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  366 (388)
T d1w3ba_         288 AEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI  366 (388)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9998888887765 345667888888889999999999999988653  3 45678888888999999999999998876


Q ss_pred             h
Q 045063          170 R  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       367 ~  367 (388)
T d1w3ba_         367 R  367 (388)
T ss_dssp             T
T ss_pred             H
Confidence            5

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-08  Score=72.11  Aligned_cols=153  Identities=11%  Similarity=0.001  Sum_probs=129.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +-..+...|+++.|...+++..+  | +...|..+...+...|++++|...|.+...... .+...+..+-..+.+.|++
T Consensus       175 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  253 (388)
T d1w3ba_         175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLI  253 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             hcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCH
Confidence            56778889999999999988643  3 566789999999999999999999999877633 4556777888889999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ++|...+++..+.. +-+...|..+...|.+.|++++|.+.++...   ..+...+..+...+.+.|++++|...|++..
T Consensus       254 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  332 (388)
T d1w3ba_         254 DLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999988743 3346789999999999999999999998866   3366788899999999999999999999876


Q ss_pred             h
Q 045063          170 R  170 (175)
Q Consensus       170 ~  170 (175)
                      +
T Consensus       333 ~  333 (388)
T d1w3ba_         333 E  333 (388)
T ss_dssp             T
T ss_pred             H
Confidence            5

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6e-08  Score=69.22  Aligned_cols=153  Identities=10%  Similarity=0.015  Sum_probs=87.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcC---------------------
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTC---------------------   71 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~---------------------   71 (175)
                      +-.++...|+++.|...|++..+  | +...|..+..+|.+.|++++|.+.+.+.....                     
T Consensus        59 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (323)
T d1fcha_          59 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP  138 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred             HHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhccccc
Confidence            44555666666666666665432  2 44455556666666666666666665543210                     


Q ss_pred             --------------------------C---CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063           72 --------------------------L---NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS  122 (175)
Q Consensus        72 --------------------------~---~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  122 (175)
                                                .   .++...+..+-..+...|++++|...++...+.. +-+...|..+...|.
T Consensus       139 ~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~  217 (323)
T d1fcha_         139 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLA  217 (323)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             chhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhccc
Confidence                                      0   1122234444455556666666666666665532 223456666666666


Q ss_pred             hcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063          123 KYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       123 ~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  169 (175)
                      +.|++++|.+.|+...  .| +...|..+..+|.+.|++++|.+.|++-.
T Consensus       218 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  267 (323)
T d1fcha_         218 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL  267 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6677766666666654  23 44556666666677777777776666644

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.3e-08  Score=69.54  Aligned_cols=153  Identities=8%  Similarity=0.065  Sum_probs=121.2

Q ss_pred             hhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           17 SIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        17 l~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      -..+.+.|++++|...|++..+  | +...|..+..++.+.|++++|...|.+..+.. +-+...+..+..++...|+++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence            3457789999999999999753  4 57789999999999999999999999987642 123457888888888999888


Q ss_pred             hHHHHHHHHHHhC-----------------------------------------------C---CcchHHHHHHHHHHHh
Q 045063           94 RGKQVHALMIKGG-----------------------------------------------T---DSEPVVKTALMDMYSK  123 (175)
Q Consensus        94 ~a~~~~~~m~~~~-----------------------------------------------~---~~~~~~~~~li~~~~~  123 (175)
                      +|.+.+.......                                               .   .++...+..+...+..
T Consensus       105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            8887777654321                                               0   1234456777788889


Q ss_pred             cCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          124 YGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       124 ~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .|++++|...|+...  .| +...|..+-..|.+.|++++|.+.|++..+
T Consensus       185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            999999999999865  34 567888999999999999999999998765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=7.2e-08  Score=68.98  Aligned_cols=153  Identities=10%  Similarity=0.049  Sum_probs=120.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-C-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHH-HHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-D-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLG-ACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~-~~~~~~   90 (175)
                      .+....+.|+++.|..+|+++..  | + ...|...+....+.|+++.|.++|.+..+.+.. +...|..... -....|
T Consensus       105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~  183 (308)
T d2onda1         105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSK  183 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcc
Confidence            45667788999999999998753  2 2 346899999999999999999999999776432 2233333222 234467


Q ss_pred             CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-------CchhHHHHHHHHHhcCChHHHHH
Q 045063           91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-------DVVTWNALLSSFLRHGLAKEAFG  163 (175)
Q Consensus        91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~  163 (175)
                      +.+.|..+|+...+. .+.+...|...++...+.|+++.|..+|++....       ....|...+.--...|+.+.+..
T Consensus       184 ~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~  262 (308)
T d2onda1         184 DKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            899999999999976 4456789999999999999999999999986421       23479999998889999999999


Q ss_pred             HHHHHHh
Q 045063          164 VFQAMTR  170 (175)
Q Consensus       164 ~~~~m~~  170 (175)
                      +++++.+
T Consensus       263 ~~~r~~~  269 (308)
T d2onda1         263 VEKRRFT  269 (308)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998755

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=2.3e-07  Score=66.23  Aligned_cols=147  Identities=5%  Similarity=-0.084  Sum_probs=116.2

Q ss_pred             CChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHH
Q 045063           24 KRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVH   99 (175)
Q Consensus        24 ~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~   99 (175)
                      +..+.|..+|++..+    .+...|...+....+.|+++.|..+|+++.+.........|...++.+.+.++.+.|+++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            445778888887542    3556788888999999999999999999987644334457999999999999999999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHH-HHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          100 ALMIKGGTDSEPVVKTALMDM-YSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       100 ~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                      +...+.+ +.+...|...... +...|+.+.|..+|+...+  | +...|..++.-+.+.|+.+.|..+|++-...
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            9988754 2344455444433 3456899999999999874  3 6678999999999999999999999997654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=2.2e-06  Score=58.93  Aligned_cols=154  Identities=12%  Similarity=-0.051  Sum_probs=109.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063           16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP   92 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~   92 (175)
                      +=.+|.+.|+++.|...|++..+   .+..+|+.+-.+|.+.|++++|.+.|++..+... -+..++..+-.++...|++
T Consensus        43 ~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_          43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHHHhhH
Confidence            44678889999999999998753   4778899999999999999999999999877522 2344788888899999999


Q ss_pred             hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--------------------------------C-
Q 045063           93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--------------------------------F-  139 (175)
Q Consensus        93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------------------------------~-  139 (175)
                      ++|...++...+... .+......+..++.+.+..+.+..+.....                                . 
T Consensus       122 ~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD  200 (259)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999887542 233333333333333343332222222111                                0 


Q ss_pred             -----C-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063          140 -----K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       140 -----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  171 (175)
                           | ...+|..+-..|...|++++|...|++-...
T Consensus       201 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         201 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence                 0 1235666777888999999999999987654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.6e-06  Score=60.23  Aligned_cols=153  Identities=5%  Similarity=-0.032  Sum_probs=114.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA   91 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~   91 (175)
                      +-.++.+.+..++|.++++++.+  | +...|+..-.++.+.| ++++|+..++...+.. +-+..+|..+-..+.+.|+
T Consensus        49 ~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          49 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhcc
Confidence            33456677888999999998753  4 6667888888888876 4789999998876552 2345688888888889999


Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCC------hHHHH
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGL------AKEAF  162 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~------~~~a~  162 (175)
                      +++|...+....+.. +.+...|..+...+.+.|++++|.+.++...+  | |...|+.+-..+.+.+.      +++|+
T Consensus       128 ~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai  206 (315)
T d2h6fa1         128 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV  206 (315)
T ss_dssp             CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence            999999999988753 34577899999999999999999999888763  3 56677766666555554      45677


Q ss_pred             HHHHHHHh
Q 045063          163 GVFQAMTR  170 (175)
Q Consensus       163 ~~~~~m~~  170 (175)
                      +.+.+..+
T Consensus       207 ~~~~~al~  214 (315)
T d2h6fa1         207 QYTLEMIK  214 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.8e-06  Score=56.52  Aligned_cols=119  Identities=11%  Similarity=-0.097  Sum_probs=91.2

Q ss_pred             hhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063           19 ADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQV   98 (175)
Q Consensus        19 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~   98 (175)
                      .+...|+++.|.+.|+++..++...|..+-.+|.+.|++++|.+.|.+..+.. +-+...|..+-.++.+.|+.++|...
T Consensus        14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~   92 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD   92 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHH
Confidence            34567889999999998888888888888899999999999999999986642 12345788888888899999999888


Q ss_pred             HHHHHHhC------------CC--cc-hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           99 HALMIKGG------------TD--SE-PVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        99 ~~~m~~~~------------~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      |++..+..            ..  ++ ..++..+-.+|.+.|++++|.+.+....
T Consensus        93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            88876421            11  11 2455667778888999999888888765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=3.5e-06  Score=55.69  Aligned_cols=96  Identities=14%  Similarity=0.065  Sum_probs=74.0

Q ss_pred             CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc-chHHHHHHH
Q 045063           40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDS-EPVVKTALM  118 (175)
Q Consensus        40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li  118 (175)
                      +.....-.-..|.+.|++++|+..|.+..+.. +-+...|..+-.++.+.|++++|...+...++  +.| +...|..+-
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg   79 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG   79 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHH
Confidence            34445555677888899999999998876652 34556788888888889999999988888875  344 456888888


Q ss_pred             HHHHhcCChHHHHHHHHhcc
Q 045063          119 DMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~  138 (175)
                      .+|.+.|++++|...|+...
T Consensus        80 ~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            88889999999988888754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.7e-06  Score=59.18  Aligned_cols=129  Identities=9%  Similarity=-0.050  Sum_probs=109.0

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALP-APERGKQVHALMIKGGTDSEPVVKTALM  118 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li  118 (175)
                      ...|+.+-..+.+.+.+++|++++++..+.  .|+ ...|+..-.++.+.+ +.++|...++...+.. +-+..+|..+-
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            345777777888999999999999999775  344 457888888888876 5899999999998753 34577999999


Q ss_pred             HHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 045063          119 DMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRER  172 (175)
Q Consensus       119 ~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  172 (175)
                      ..+.+.|++++|.+.++...+  | +...|..+...+.+.|++++|.+.+++..+.+
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~  176 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED  176 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence            999999999999999999873  3 78899999999999999999999999987753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.9e-06  Score=54.01  Aligned_cols=121  Identities=9%  Similarity=0.007  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK  123 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  123 (175)
                      |+- -..+...|+++.|++.|.+.    .+|+..+|..+-.++.+.|++++|...|++.++.. +-+...|..+-.+|.+
T Consensus         9 ~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           9 WNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHh
Confidence            443 34556889999999999875    45777889999999999999999999999999864 3456799999999999


Q ss_pred             cCChHHHHHHHHhccC---CC----------------chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          124 YGLLGESVEAFKEIEF---KD----------------VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       124 ~g~~~~a~~~~~~m~~---~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      .|++++|.+.|+....   ++                ..++..+-.++.+.|++++|.+.|++..+
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999988887531   11                12344556678999999999999987654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.4e-05  Score=51.22  Aligned_cols=116  Identities=7%  Similarity=-0.042  Sum_probs=82.4

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Q 045063           46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG  125 (175)
Q Consensus        46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  125 (175)
                      ..-..|.+.|++++|...|.+..+.. +-+...|..+-.++.+.|++++|...|.+.++.. +-+...|..+..+|...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence            34556778899999999999887653 2345588888888888999999999999888753 345578888889999999


Q ss_pred             ChHHHHHHHHhcc--CC-CchhHHHHHHH--HHhcCChHHHHH
Q 045063          126 LLGESVEAFKEIE--FK-DVVTWNALLSS--FLRHGLAKEAFG  163 (175)
Q Consensus       126 ~~~~a~~~~~~m~--~~-~~~~~~~li~~--~~~~g~~~~a~~  163 (175)
                      ++++|.+.++...  .| |...+..+-.+  ..+.+.++++..
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988888876  34 34444444333  223344444543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=5.5e-06  Score=58.38  Aligned_cols=155  Identities=10%  Similarity=-0.112  Sum_probs=112.9

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCC-CCHhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLN-LTAYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~-~~~~t~~~   81 (175)
                      .-..|...+++++|.+.|.+..+     .    -..+|+.+-.+|.+.|++++|.+.|.+..+.    |-. ....++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            55677888999999999988643     1    2357899999999999999999999986532    211 11335666


Q ss_pred             HHHHHh-cCCCchhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccCC--Cc--------hhH
Q 045063           82 VLGACS-ALPAPERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEFK--DV--------VTW  145 (175)
Q Consensus        82 ll~~~~-~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--------~~~  145 (175)
                      +...+. ..|++++|.+.+++..+.    +-.+. ..++..+...|...|++++|.+.|+.....  +.        ..|
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666664 569999999999887632    22222 346888999999999999999999986522  11        123


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          146 NALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       146 ~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ...+.++...|+.+.|...+++..+
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4455567788999999999888754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.8e-05  Score=50.64  Aligned_cols=89  Identities=10%  Similarity=-0.004  Sum_probs=77.2

Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCCh
Q 045063           82 VLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLA  158 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~  158 (175)
                      --+.+.+.|++++|...|.+.++.. +-+...|..+-.+|...|++++|.+.|+...  .| +...|..+..+|...|++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            3456789999999999999999864 3467799999999999999999999999876  34 667899999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 045063          159 KEAFGVFQAMTRE  171 (175)
Q Consensus       159 ~~a~~~~~~m~~~  171 (175)
                      ++|...+++....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999987653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2e-05  Score=47.85  Aligned_cols=90  Identities=4%  Similarity=-0.164  Sum_probs=66.6

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063           48 LFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        48 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  127 (175)
                      -..+.+.|++++|...|.+..+. -+-+...|..+-.++.+.|++++|...+....+.. +.+...|..+..+|...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc-CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            45567778888888888887654 22344467777778888888888888888887754 34666788888888888888


Q ss_pred             HHHHHHHHhccC
Q 045063          128 GESVEAFKEIEF  139 (175)
Q Consensus       128 ~~a~~~~~~m~~  139 (175)
                      ++|...|+...+
T Consensus        88 ~~A~~~~~~a~~   99 (117)
T d1elwa_          88 EEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            888888887663

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.2e-05  Score=46.90  Aligned_cols=83  Identities=11%  Similarity=0.018  Sum_probs=41.0

Q ss_pred             cCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHH
Q 045063           21 ALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQ   97 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~   97 (175)
                      .+.|++++|...|++..+  | +...|..+-.+|.+.|++++|+..|....+.. +.+...|..+-.++...|++++|..
T Consensus        14 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~~   92 (117)
T d1elwa_          14 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKR   92 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHHH
Confidence            344555555555555421  2 34445555555555555555555555554432 1233345555555555555555555


Q ss_pred             HHHHHHH
Q 045063           98 VHALMIK  104 (175)
Q Consensus        98 ~~~~m~~  104 (175)
                      .++...+
T Consensus        93 ~~~~a~~   99 (117)
T d1elwa_          93 TYEEGLK   99 (117)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            5555544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=8.3e-05  Score=50.64  Aligned_cols=142  Identities=6%  Similarity=-0.181  Sum_probs=102.2

Q ss_pred             CCCChhHHHHHhhhccCC-------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCch
Q 045063           22 LPKRYVYTHQVFDEISHG-------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPE   93 (175)
Q Consensus        22 ~~~~~~~a~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~   93 (175)
                      ...+.+.+..-+++....       ....|..+-.+|.+.|++++|.+.|++..+.  .|+ ..+|..+-.++.+.|+++
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~   88 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD   88 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHH
Confidence            344555566666655421       3345777788999999999999999998764  344 458999999999999999


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQ  166 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~  166 (175)
                      +|...|++..+.. +-+...|..+..+|...|++++|...|+...  .| +...+..+..++.+.+..+.+..+..
T Consensus        89 ~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
T d1xnfa_          89 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ  163 (259)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            9999999999853 2346688899999999999999999999876  33 33333333344455555444444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=1.9e-05  Score=51.97  Aligned_cols=116  Identities=4%  Similarity=-0.157  Sum_probs=86.1

Q ss_pred             hhhcCCCChhHHHHHhhhcc--C-CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCch
Q 045063           18 IADALPKRYVYTHQVFDEIS--H-GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPE   93 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~   93 (175)
                      +.+.+.|+++.|...|++..  . .+...|+.+-.+|.+.|++++|...|....+  +.|+ ..+|..+-.++.+.|+++
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~~~   89 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYD   89 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHH
Confidence            45678999999999999864  2 4777899999999999999999999999854  4564 458999999999999999


Q ss_pred             hHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063           94 RGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKEI  137 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m  137 (175)
                      +|...|++..+.  .|+ ...+...+..+.+.+....+.......
T Consensus        90 ~A~~~~~~al~l--~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  132 (201)
T d2c2la1          90 EAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWNSIEERR  132 (201)
T ss_dssp             HHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh--CcccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999988753  232 223334444555544444444444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.02  E-value=2.4e-05  Score=47.16  Aligned_cols=87  Identities=7%  Similarity=-0.113  Sum_probs=45.6

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063           48 LFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        48 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  127 (175)
                      -..+.+.|++++|...|++..+... -+...|..+-.++.+.+++++|...+++..+.. +.+...|..+...|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            3344555666666666666544321 133455555555555566666666555555432 22344555555555555555


Q ss_pred             HHHHHHHHh
Q 045063          128 GESVEAFKE  136 (175)
Q Consensus       128 ~~a~~~~~~  136 (175)
                      ++|.+.+++
T Consensus       101 ~~A~~~l~~  109 (112)
T d1hxia_         101 NAALASLRA  109 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.02  E-value=2.2e-05  Score=47.34  Aligned_cols=88  Identities=13%  Similarity=-0.022  Sum_probs=75.7

Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCC
Q 045063           81 PVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGL  157 (175)
Q Consensus        81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~  157 (175)
                      .+-..+.+.|++++|...+++..+.. +-+...|..+-.+|.+.|++++|...|+...  .| +...|..+-.+|...|+
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            34556778999999999999999864 2367899999999999999999999999876  44 67789999999999999


Q ss_pred             hHHHHHHHHHHH
Q 045063          158 AKEAFGVFQAMT  169 (175)
Q Consensus       158 ~~~a~~~~~~m~  169 (175)
                      .++|.+.|++..
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.90  E-value=0.00015  Score=47.46  Aligned_cols=112  Identities=9%  Similarity=0.123  Sum_probs=79.6

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Q 045063           48 LFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG  125 (175)
Q Consensus        48 i~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  125 (175)
                      -......|++++|.+.|.+-...  |-....            ....+-+...-..+..    .....+..+...+.+.|
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~------------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGPVLDD------------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCccccccc------------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence            35677889999999999998653  221110            1111112222222221    23467888999999999


Q ss_pred             ChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh-----cccCC
Q 045063          126 LLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR-----ERVEF  175 (175)
Q Consensus       126 ~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p  175 (175)
                      ++++|...++...  .| +...|..++.+|.+.|+.++|++.|+++.+     -|+.|
T Consensus        82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9999999999886  44 778899999999999999999999999743     47776

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=6.6e-05  Score=45.99  Aligned_cols=93  Identities=8%  Similarity=-0.064  Sum_probs=53.8

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc---hhHHHHHHHHHHhCCCcc-hHHHHHHHHH
Q 045063           45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP---ERGKQVHALMIKGGTDSE-PVVKTALMDM  120 (175)
Q Consensus        45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~-~~~~~~li~~  120 (175)
                      ..+++.+...+++++|.+.|.+....+. .+..++..+-.++.+.++.   ++|..+++...+....|+ ...|..+-.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            3456666666677777777776655422 3444555555566554443   346666666554332232 2355666667


Q ss_pred             HHhcCChHHHHHHHHhcc
Q 045063          121 YSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       121 ~~~~g~~~~a~~~~~~m~  138 (175)
                      |.+.|++++|.+.|+...
T Consensus        82 y~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHH
Confidence            777777777777776655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=6.4e-05  Score=46.06  Aligned_cols=91  Identities=9%  Similarity=-0.030  Sum_probs=73.6

Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC---hHHHHHHHHhccCCC-----chhHHHHHHH
Q 045063           80 TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL---LGESVEAFKEIEFKD-----VVTWNALLSS  151 (175)
Q Consensus        80 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-----~~~~~~li~~  151 (175)
                      ..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++   +++|.++++.....+     ..+|..+-.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            457888889999999999999999864 4567788889989887555   456999999886432     2367778889


Q ss_pred             HHhcCChHHHHHHHHHHHhc
Q 045063          152 FLRHGLAKEAFGVFQAMTRE  171 (175)
Q Consensus       152 ~~~~g~~~~a~~~~~~m~~~  171 (175)
                      |.+.|++++|.+.|++..+-
T Consensus        82 y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHh
Confidence            99999999999999998763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=7.8e-05  Score=52.26  Aligned_cols=127  Identities=9%  Similarity=-0.002  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHh----CC-CcchHH
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHST----CLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKG----GT-DSEPVV  113 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~  113 (175)
                      |.-.-..|...|++++|.+.|.+....    +-+++. .+|..+-.++.+.|++++|...+....+.    |- .....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            555677888999999999999998643    222332 48899999999999999999999987642    11 111346


Q ss_pred             HHHHHHHHHh-cCChHHHHHHHHhccC-----C----CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          114 KTALMDMYSK-YGLLGESVEAFKEIEF-----K----DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       114 ~~~li~~~~~-~g~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +..+...|-. .|++++|.+.++...+     .    -..+|..+...|...|++++|.+.|++...
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            6677777754 6999999999987641     1    134578889999999999999999999765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.0013  Score=42.25  Aligned_cols=93  Identities=5%  Similarity=-0.086  Sum_probs=66.1

Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHhc-CCCC-------------CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc
Q 045063           45 NSQLFSYTRSRNFPATWALFCYMHST-CLNL-------------TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE  110 (175)
Q Consensus        45 ~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~-------------~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~  110 (175)
                      ...-..+.+.|++++|...|.+.... ...+             -..+|+.+-.++.+.|++++|...++..++.. +.+
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~   95 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN   95 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccc
Confidence            33445667777778888777776543 1111             02346666777888888888888888888753 336


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          111 PVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ...|..+..+|...|++++|...|+...
T Consensus        96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          96 EKGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            7788888888888999999988888876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=0.00088  Score=46.68  Aligned_cols=152  Identities=6%  Similarity=-0.093  Sum_probs=108.8

Q ss_pred             hhhcCCCChhHHHHHhhhccC--CC------chhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHH
Q 045063           18 IADALPKRYVYTHQVFDEISH--GD------LSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLG   84 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~   84 (175)
                      ..+...|++++|.++|++..+  |+      ...++.+-.+|...|++++|.+.|.+..+.    +-.+. ..++..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            446688999999999998632  22      235777888999999999999999997653    11111 235666777


Q ss_pred             HHhcCCCchhHHHHHHHHHHh----CCC--cc-hHHHHHHHHHHHhcCChHHHHHHHHhccCC--------CchhHHHHH
Q 045063           85 ACSALPAPERGKQVHALMIKG----GTD--SE-PVVKTALMDMYSKYGLLGESVEAFKEIEFK--------DVVTWNALL  149 (175)
Q Consensus        85 ~~~~~~~~~~a~~~~~~m~~~----~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~~~~~li  149 (175)
                      .+...|++..+...+......    +..  +. ...+..+...|...|+++.+...+......        ....+..+.
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            888999999999888876632    111  11 235666778899999999999988876521        233455566


Q ss_pred             HHHHhcCChHHHHHHHHHHH
Q 045063          150 SSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ..+...|+...+...+.+..
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~  199 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLE  199 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHH
Confidence            67778888888888776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00059  Score=43.86  Aligned_cols=92  Identities=9%  Similarity=-0.119  Sum_probs=73.6

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhCC-Cc-------------chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-C
Q 045063           79 FTPVLGACSALPAPERGKQVHALMIKGGT-DS-------------EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-D  141 (175)
Q Consensus        79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~  141 (175)
                      +...-+.+.+.|++++|...|.+.++.-. .+             -..+|+.+..+|.+.|++++|...++...  .| +
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~   95 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN   95 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence            33444577888999999999988875411 11             12467788899999999999999998876  44 7


Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          142 VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       142 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +..|..+-.+|...|++++|...|++..+
T Consensus        96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          96 EKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            77899999999999999999999999865

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00047  Score=42.17  Aligned_cols=55  Identities=5%  Similarity=-0.078  Sum_probs=25.4

Q ss_pred             HHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHH
Q 045063           48 LFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMI  103 (175)
Q Consensus        48 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~  103 (175)
                      -..+.+.|++++|+..|.+.++... -+...+..+-.++.+.|++++|...+.+.+
T Consensus        11 G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          11 GNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            3444455555555555555443311 123344444444445555555555544444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=0.00023  Score=46.49  Aligned_cols=95  Identities=9%  Similarity=0.004  Sum_probs=68.6

Q ss_pred             hhhcCCCChhHHHHHhhhccC--CC-----------------------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063           18 IADALPKRYVYTHQVFDEISH--GD-----------------------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCL   72 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~--~~-----------------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~   72 (175)
                      ......|++++|...|++...  ++                       ...+..+..++.+.|++++|+..+++..+. -
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-~   97 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-H   97 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-C
Confidence            345678999999999888642  11                       134677777888888888888888887664 2


Q ss_pred             CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH-----hCCCcchHH
Q 045063           73 NLTAYTFTPVLGACSALPAPERGKQVHALMIK-----GGTDSEPVV  113 (175)
Q Consensus        73 ~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~  113 (175)
                      +-+...|..++.++.+.|+.++|.+.|+++.+     .|+.|+..+
T Consensus        98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            24556888888888888888888888887743     477777654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.53  E-value=0.003  Score=39.60  Aligned_cols=95  Identities=6%  Similarity=-0.041  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHHhcCC----CCC-----------HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC
Q 045063           43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL----NLT-----------AYTFTPVLGACSALPAPERGKQVHALMIKGGT  107 (175)
Q Consensus        43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~----~~~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  107 (175)
                      .+..--..+.+.|++.+|+..|.+..+.-.    .++           ..+|+.+-.++.+.|++++|...++...+.. 
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-   97 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-   97 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence            344455677788888888888888764310    011           1244455555566666666666666655542 


Q ss_pred             CcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          108 DSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       108 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +.+...|-.+..+|...|++++|...|+...
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            2344566666666666666666666666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.46  E-value=0.0018  Score=40.70  Aligned_cols=90  Identities=11%  Similarity=-0.079  Sum_probs=71.7

Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhCC----C-----------cchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-Cc
Q 045063           81 PVLGACSALPAPERGKQVHALMIKGGT----D-----------SEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DV  142 (175)
Q Consensus        81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~----~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~  142 (175)
                      .--+.+.+.|++++|...|.+..+.-.    .           ....+|+.+..+|.+.|++++|.+.++...  .| ++
T Consensus        22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~  101 (153)
T d2fbna1          22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV  101 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhh
Confidence            334566788899999888888774211    0           113467889999999999999999999876  44 77


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          143 VTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      ..|..+..++...|+++.|...|++..+
T Consensus       102 ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1         102 KALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            8999999999999999999999998765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00054  Score=41.87  Aligned_cols=89  Identities=8%  Similarity=0.006  Sum_probs=63.6

Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-Cc-------hhHHHHH
Q 045063           80 TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DV-------VTWNALL  149 (175)
Q Consensus        80 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~-------~~~~~li  149 (175)
                      ..+-+.+.+.|++++|...|.+.++.. +.+...|..+-.+|.+.|++++|.+.++...+  | +.       .+|..+-
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            345566778888888888888888753 34567888888888888888888888887652  2 22       2455566


Q ss_pred             HHHHhcCChHHHHHHHHHHH
Q 045063          150 SSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ..+...+++++|.+.|++-.
T Consensus        87 ~~~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHH
Confidence            66777778888888877644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00083  Score=46.82  Aligned_cols=154  Identities=6%  Similarity=-0.144  Sum_probs=112.1

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC--------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC--HhhHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH--------GDLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT--AYTFTP   81 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~--~~t~~~   81 (175)
                      +-..+...|+++.+...++....        .....+......+...|+...+...+.+....    +..+.  ...+..
T Consensus       139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~  218 (366)
T d1hz4a_         139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV  218 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence            44677788999999999987642        12344566667777889999999988876542    11111  224566


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHhCCC---cchHHHHHHHHHHHhcCChHHHHHHHHhccC--------C-CchhHHHHH
Q 045063           82 VLGACSALPAPERGKQVHALMIKGGTD---SEPVVKTALMDMYSKYGLLGESVEAFKEIEF--------K-DVVTWNALL  149 (175)
Q Consensus        82 ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~-~~~~~~~li  149 (175)
                      ....+...|+++.+...++...+....   .....+..+...|...|++++|...++....        | ....|..+-
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  298 (366)
T d1hz4a_         219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN  298 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence            667778899999999998876643221   2234567788999999999999999988641        1 344677888


Q ss_pred             HHHHhcCChHHHHHHHHHHH
Q 045063          150 SSFLRHGLAKEAFGVFQAMT  169 (175)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~m~  169 (175)
                      ..|.+.|++++|.+.+++-.
T Consensus       299 ~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         299 QLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            89999999999999998754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.43  E-value=0.0029  Score=40.28  Aligned_cols=125  Identities=6%  Similarity=-0.047  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCC-----------HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHST---CLNLT-----------AYTFTPVLGACSALPAPERGKQVHALMIKGGTDS  109 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~  109 (175)
                      +.-.-..+.+.|++.+|...|.+....   ...++           ...|+.+-.++.+.|++++|...++...+.. +.
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~   96 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA   96 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cc
Confidence            344456677778888888888775431   11111           1245556667788889999988888888753 45


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChH-HHHHHHHHHH
Q 045063          110 EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAK-EAFGVFQAMT  169 (175)
Q Consensus       110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~-~a~~~~~~m~  169 (175)
                      +...|..+..+|...|++++|...|+...  .| |...+..+-....+.+... ...+.|..|.
T Consensus        97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            66788888888999999999988888876  44 4444444444333433332 3344555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.23  E-value=0.0021  Score=40.96  Aligned_cols=94  Identities=6%  Similarity=-0.028  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhc--------------CCCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCC
Q 045063           44 LNSQLFSYTRSRNFPATWALFCYMHST--------------CLNL-TAYTFTPVLGACSALPAPERGKQVHALMIKGGTD  108 (175)
Q Consensus        44 ~~~li~~~~~~g~~~~a~~l~~~m~~~--------------~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  108 (175)
                      +...-..+.+.|++++|++.|.+..+.              .+.| ....|..+-.++.+.|++++|...+...++.. +
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p  108 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  108 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence            555667788899999999999887531              0111 12244555555666666666666666666532 2


Q ss_pred             cchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          109 SEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       109 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      .+...|..+-.+|.+.|++++|.+.|+...
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            344566666666666666666666666554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.21  E-value=0.0014  Score=41.77  Aligned_cols=110  Identities=5%  Similarity=-0.058  Sum_probs=82.6

Q ss_pred             hhhhhcCCCChhHHHHHhhhccC-------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063           16 ISIADALPKRYVYTHQVFDEISH-------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA   76 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~-------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~   76 (175)
                      .-..+.+.|+++.|...|.+...                   .....|..+-.++.+.|++++|+..+.+.++.. +-+.
T Consensus        33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~  111 (169)
T d1ihga1          33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT  111 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhh
Confidence            34566788999999999877531                   134457778899999999999999999987653 2345


Q ss_pred             hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063           77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL  127 (175)
Q Consensus        77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  127 (175)
                      ..|..+-.++.+.|++++|.+.|+...+.. +.+......+..++.+....
T Consensus       112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         112 KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999853 23455666665555444333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.07  E-value=0.0014  Score=45.41  Aligned_cols=51  Identities=12%  Similarity=-0.036  Sum_probs=26.0

Q ss_pred             hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063           53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK  104 (175)
Q Consensus        53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~  104 (175)
                      +.|++++|+..+++-++. -+-|...+..+...++..|++++|.+.++...+
T Consensus         8 ~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445555555555555443 222334555555555555555555555555554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.93  E-value=0.0048  Score=39.23  Aligned_cols=93  Identities=10%  Similarity=-0.143  Sum_probs=73.3

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHHHHh---CCCc-----------chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-
Q 045063           78 TFTPVLGACSALPAPERGKQVHALMIKG---GTDS-----------EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-  140 (175)
Q Consensus        78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-  140 (175)
                      .+.-.-+.+.+.|++++|...|...+..   ...+           ...+|+.+-.+|.+.|++++|...++...  .| 
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~   96 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA   96 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence            4555567788899999999999877632   1111           12356778889999999999999999876  33 


Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          141 DVVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       141 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                      +...|..+..+|...|++++|...|++...
T Consensus        97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777899999999999999999999999875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.91  E-value=0.00017  Score=50.11  Aligned_cols=116  Identities=12%  Similarity=-0.090  Sum_probs=72.6

Q ss_pred             cCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHH
Q 045063           21 ALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGK   96 (175)
Q Consensus        21 ~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~   96 (175)
                      .+.|++++|...+++..+  | |...+..+...|+..|++++|.+.|+...+.  .|+.. .+..+-..+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHH
Confidence            467999999999999753  4 7888999999999999999999999998664  34433 3333322222111111111


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      .-...-...+-+++...+......+.+.|+.++|.+.++...
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~  126 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE  126 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            000000000112233444555667788899999988887764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.00022  Score=50.70  Aligned_cols=151  Identities=8%  Similarity=0.000  Sum_probs=99.7

Q ss_pred             hhhcCCCChhHHHHHhhhccC---CCchhHHHHH-HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063           18 IADALPKRYVYTHQVFDEISH---GDLSSLNSQL-FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE   93 (175)
Q Consensus        18 ~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li-~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~   93 (175)
                      ......++.++|...+.+..+   ++...+...+ ..+...|..++|++.++...+... -+...|..+-..+.+.|+.+
T Consensus       117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHH
Confidence            334445568889988888743   3455555444 666678899999999888755532 24456777666666666544


Q ss_pred             hHH------------------------------HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC--
Q 045063           94 RGK------------------------------QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD--  141 (175)
Q Consensus        94 ~a~------------------------------~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--  141 (175)
                      +|.                              ..+...... -+++...+..+...+...|+.++|...+....+.+  
T Consensus       196 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  274 (334)
T d1dcea1         196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG-RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW  274 (334)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS-CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence            332                              222222211 12233344556667777888999999888877554  


Q ss_pred             -chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          142 -VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       142 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                       ...|..+...|.+.|+.++|.+.+++..+
T Consensus       275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         275 CLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             45677788889999999999999998765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.82  E-value=0.016  Score=36.15  Aligned_cols=96  Identities=8%  Similarity=-0.028  Sum_probs=63.0

Q ss_pred             hHHHH--HHHHHhCCCcchHHHHHHHHHhcC-CCCC----------HhhHHHHHHHHhcCCCchhHHHHHHHHHHh----
Q 045063           43 SLNSQ--LFSYTRSRNFPATWALFCYMHSTC-LNLT----------AYTFTPVLGACSALPAPERGKQVHALMIKG----  105 (175)
Q Consensus        43 ~~~~l--i~~~~~~g~~~~a~~l~~~m~~~~-~~~~----------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----  105 (175)
                      +|..+  ...+.+.|++++|+..|.+..+-. -.|+          ...|+.+-.++.+.|++++|...+++.++.    
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            45555  445567789999999999976421 1121          346777777888888888888777776642    


Q ss_pred             -CCCcc-----hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063          106 -GTDSE-----PVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus       106 -~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                       ...++     ...++.+-.+|...|++++|.+.|+...
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             11111     2245667778888888888887777643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.77  E-value=0.0056  Score=38.35  Aligned_cols=93  Identities=9%  Similarity=0.052  Sum_probs=69.8

Q ss_pred             hHHHH--HHHHhcCCCchhHHHHHHHHHHhC-CCcc----------hHHHHHHHHHHHhcCChHHHHHHHHhccC-----
Q 045063           78 TFTPV--LGACSALPAPERGKQVHALMIKGG-TDSE----------PVVKTALMDMYSKYGLLGESVEAFKEIEF-----  139 (175)
Q Consensus        78 t~~~l--l~~~~~~~~~~~a~~~~~~m~~~~-~~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----  139 (175)
                      +|..+  -....+.|++++|.+.|.+.++.. -.|+          ...|+.+-.+|.+.|++++|...++....     
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            55555  445567799999999999998521 1121          35788999999999999999988887541     


Q ss_pred             ----CC-----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063          140 ----KD-----VVTWNALLSSFLRHGLAKEAFGVFQAMTR  170 (175)
Q Consensus       140 ----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  170 (175)
                          ++     ...|+.+-.+|...|++++|...|++..+
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                11     22466778899999999999999998643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.019  Score=40.13  Aligned_cols=144  Identities=8%  Similarity=-0.042  Sum_probs=94.5

Q ss_pred             hhhhhcCCCChhHHHHHhhhcc--CCCc-hhHHHHH---HHHHh-------CCCcchHHHHHHHHHhcCCCCCHhhHHHH
Q 045063           16 ISIADALPKRYVYTHQVFDEIS--HGDL-SSLNSQL---FSYTR-------SRNFPATWALFCYMHSTCLNLTAYTFTPV   82 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~--~~~~-~~~~~li---~~~~~-------~g~~~~a~~l~~~m~~~~~~~~~~t~~~l   82 (175)
                      ++....+....++|..++++..  .|+. ..|+..-   ..+..       .|++++|+..++...+.. +-+...|..+
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~  113 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR  113 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHh
Confidence            3333344445589999999875  3543 3454332   22222       344778999998886652 2344566666


Q ss_pred             HHHHhcCC--CchhHHHHHHHHHHhCCCcchHHHHH-HHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcC
Q 045063           83 LGACSALP--APERGKQVHALMIKGGTDSEPVVKTA-LMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHG  156 (175)
Q Consensus        83 l~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g  156 (175)
                      -.++...+  +.+++...+....+.. +++...|.. .-..+...|.+++|...++...+.   |...|+.+-..+.+.|
T Consensus       114 ~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         114 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            66666655  4788888888888753 234555544 446777889999999999988743   5667888888888888


Q ss_pred             ChHHH
Q 045063          157 LAKEA  161 (175)
Q Consensus       157 ~~~~a  161 (175)
                      +.++|
T Consensus       193 ~~~~A  197 (334)
T d1dcea1         193 PQPDS  197 (334)
T ss_dssp             CCCCS
T ss_pred             CHHHH
Confidence            76655

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.67  E-value=0.0056  Score=38.02  Aligned_cols=75  Identities=7%  Similarity=0.016  Sum_probs=46.0

Q ss_pred             chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC-----------ChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCCh
Q 045063           92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG-----------LLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLA  158 (175)
Q Consensus        92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~  158 (175)
                      +++|...+++..+.. +.+...|..+-.+|...|           .+++|.+.|+...  .|+...|..-+..+      
T Consensus        57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------  129 (145)
T d1zu2a1          57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------  129 (145)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------
Confidence            345666666666532 233456666666665543           3577777777765  66666655544443      


Q ss_pred             HHHHHHHHHHHhccc
Q 045063          159 KEAFGVFQAMTRERV  173 (175)
Q Consensus       159 ~~a~~~~~~m~~~g~  173 (175)
                      .+|.+++.+..++|+
T Consensus       130 ~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         130 AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HTHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            577788888877765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.58  E-value=0.033  Score=39.58  Aligned_cols=64  Identities=13%  Similarity=0.035  Sum_probs=29.8

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP   90 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~   90 (175)
                      +...|-+.|.++.|..+|..+.     -|..++.++.+.++++.|.+.....      -+..+|..+..+|.+..
T Consensus        20 i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~   83 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK   83 (336)
T ss_dssp             ---------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence            5666667777777777776443     3555556666666666655555433      12334444444444433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.46  E-value=0.08  Score=37.53  Aligned_cols=140  Identities=11%  Similarity=0.033  Sum_probs=89.2

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG   95 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a   95 (175)
                      ++..+.+.++++.|.+.+.+.  .+..+|.-+...+.+......|     .+.......+......++..+-..|.+++.
T Consensus        46 l~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~L  118 (336)
T d1b89a_          46 LASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEEL  118 (336)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHH
Confidence            667777777777777766544  3556788888888777654432     233333445555667788888888888888


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-----------CchhHHHHHHHHHhcCChHHHHHH
Q 045063           96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-----------DVVTWNALLSSFLRHGLAKEAFGV  164 (175)
Q Consensus        96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~g~~~~a~~~  164 (175)
                      ..+++..... -..+...++-++..|++.+ .++..+.+......           ....|.-++--|.+.|++++|..+
T Consensus       119 i~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~  196 (336)
T d1b89a_         119 ITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  196 (336)
T ss_dssp             HHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHH
Confidence            8888866532 2456677888888888865 34444444443211           223466666667777777766554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.054  Score=30.60  Aligned_cols=63  Identities=10%  Similarity=-0.115  Sum_probs=46.1

Q ss_pred             HhhHHHHHHHHhcCCCchhHHHHHHHHHHhC-----CCcc-hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           76 AYTFTPVLGACSALPAPERGKQVHALMIKGG-----TDSE-PVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      ...+--+-..+.+.|+.++|...+++..+..     ..++ ..+++.+-.+|.+.|++++|...+++..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            3444566677788889999988888877431     1122 3578888888889999999988888876

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.029  Score=41.85  Aligned_cols=92  Identities=7%  Similarity=-0.170  Sum_probs=38.1

Q ss_pred             chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063           41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD  119 (175)
Q Consensus        41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  119 (175)
                      ...+..+-..+.+.|+.++|...+.....    ++ ..++..+-+.+...+++++|...|.+..+.. +-+...|+.|-.
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~  194 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCS----YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI  194 (497)
T ss_dssp             -----------------------CCHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence            33444445555555555555554444321    11 1245555566666666666666666666532 223346666666


Q ss_pred             HHHhcCChHHHHHHHHhc
Q 045063          120 MYSKYGLLGESVEAFKEI  137 (175)
Q Consensus       120 ~~~~~g~~~~a~~~~~~m  137 (175)
                      .|...|+..+|...|.+-
T Consensus       195 ~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            666666666666655543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.17  Score=28.40  Aligned_cols=70  Identities=6%  Similarity=-0.114  Sum_probs=47.6

Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHhc-----CCCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHH
Q 045063           46 SQLFSYTRSRNFPATWALFCYMHST-----CLNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTAL  117 (175)
Q Consensus        46 ~li~~~~~~g~~~~a~~l~~~m~~~-----~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l  117 (175)
                      -+-..+.+.|+++.|...|++..+.     ...++ ..++..+-.++.+.|++++|...+++..+..  |+ ..+++.+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~a~~Nl   86 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence            4556677888888888888876542     11222 3467778888888888888888888888743  43 3455444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.069  Score=39.73  Aligned_cols=108  Identities=8%  Similarity=-0.176  Sum_probs=71.3

Q ss_pred             hhhhhcCCCChhHHHHHhhhccCCC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCch
Q 045063           16 ISIADALPKRYVYTHQVFDEISHGD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPE   93 (175)
Q Consensus        16 ll~~~~~~~~~~~a~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~   93 (175)
                      +-..+.+.|+.+.|...++....++ ..++..+-..+...|++++|...|.+..+.  .|+. ..|+.+-..+...|+..
T Consensus       126 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~  203 (497)
T d1ya0a1         126 LGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHL  203 (497)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHH
Confidence            4445556677777777666544332 345777888888999999999999998654  4555 59999999999999999


Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL  126 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  126 (175)
                      +|...|.+..... .|....+..|...|.+...
T Consensus       204 ~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         204 TTIFYYCRSIAVK-FPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhhh
Confidence            9999999888653 5677889999888876554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.80  E-value=0.039  Score=33.95  Aligned_cols=98  Identities=7%  Similarity=-0.089  Sum_probs=66.8

Q ss_pred             hcCCCChhHHHHHhhhcc--CC-CchhHHHHHHHHHhC----------CCcchHHHHHHHHHhcCCCCC-HhhHHHHHHH
Q 045063           20 DALPKRYVYTHQVFDEIS--HG-DLSSLNSQLFSYTRS----------RNFPATWALFCYMHSTCLNLT-AYTFTPVLGA   85 (175)
Q Consensus        20 ~~~~~~~~~a~~~f~~~~--~~-~~~~~~~li~~~~~~----------g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~   85 (175)
                      |-+.+.+++|...|+...  .| +...+..+-.++...          +.+++|...|++..+.  .|+ ..+|..+-.+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHH
Confidence            345567899999999875  34 666777777777643          4456788888887654  344 4478777777


Q ss_pred             HhcCC-----------CchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063           86 CSALP-----------APERGKQVHALMIKGGTDSEPVVKTALMDMY  121 (175)
Q Consensus        86 ~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  121 (175)
                      +...|           .++.|.+.|+...+  +.|+-..+..-+..+
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH
Confidence            76544           35778888888776  467776666555544

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.56  E-value=1  Score=25.57  Aligned_cols=45  Identities=9%  Similarity=0.116  Sum_probs=23.6

Q ss_pred             hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +...-+..+....+.|+.....+-+.++.|.+++..|.++|+.++
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333333444444455555555555555555555555555555544

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.53  E-value=0.57  Score=28.03  Aligned_cols=62  Identities=5%  Similarity=-0.040  Sum_probs=40.9

Q ss_pred             hhhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCCcc--hHHHHHHHHHhcCCCCCH
Q 045063           15 CISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRNFP--ATWALFCYMHSTCLNLTA   76 (175)
Q Consensus        15 ~ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~~~~~~~   76 (175)
                      .++.-|...|+.++|...++++..|.   ...+..+..++-+.++-.  .+.+++..+...|+-+..
T Consensus        12 ~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~   78 (129)
T d2nsza1          12 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID   78 (129)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHH
Confidence            37777778888888888888887653   344556666666655543  356688888777654443

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.70  E-value=2.3  Score=25.22  Aligned_cols=74  Identities=8%  Similarity=0.016  Sum_probs=36.0

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH--HHHHHHHhccCCCchhHHHHHHHHH
Q 045063           79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG--ESVEAFKEIEFKDVVTWNALLSSFL  153 (175)
Q Consensus        79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~li~~~~  153 (175)
                      ...+++=|...++.++|...++++..... .+...+..+..+.-+.+.-.  -+..++..+...+..+-..+..|+.
T Consensus        10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~-~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i~~Gf~   85 (129)
T d2nsza1          10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE   85 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCchh-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            44556666666666666666665532111 12233344444443433332  2345555555555555555555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=84.89  E-value=2.4  Score=24.77  Aligned_cols=80  Identities=14%  Similarity=-0.077  Sum_probs=42.1

Q ss_pred             CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CchhHHHHHHHHHh----cCChHH
Q 045063           90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFK-DVVTWNALLSSFLR----HGLAKE  160 (175)
Q Consensus        90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~  160 (175)
                      .+.+++...+++..+.|   +......|-..|..    ..+.++|.+.|+.--+. +......|-..|..    ..+.++
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHH
Confidence            35556666666555544   22333333333332    34566777777765543 34444444444443    346777


Q ss_pred             HHHHHHHHHhcc
Q 045063          161 AFGVFQAMTRER  172 (175)
Q Consensus       161 a~~~~~~m~~~g  172 (175)
                      |.++|++-.+.|
T Consensus       114 A~~~~~~Aa~~G  125 (133)
T d1klxa_         114 AVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCC
Confidence            777777766555

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.94  E-value=2.8  Score=24.74  Aligned_cols=64  Identities=11%  Similarity=-0.095  Sum_probs=41.2

Q ss_pred             CCHhhHHHHHHHHhcCC---CchhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           74 LTAYTFTPVLGACSALP---APERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        74 ~~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      |+..|--..--+++++.   +.++|..+++...+.+ +.+. ..+=.|--+|.+.|++++|.+.++...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L  100 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  100 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44444444444455443   4567888888877653 2232 455566677888999999988888876

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=80.65  E-value=4.1  Score=24.41  Aligned_cols=63  Identities=8%  Similarity=0.072  Sum_probs=47.3

Q ss_pred             CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063           75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE  138 (175)
Q Consensus        75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  138 (175)
                      +..-+...++...+.|+-+....++..+.+. -+|+....-.+..+|.+.|...++.+++.+.=
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~AC  147 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC  147 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            3445667788888888888888888886664 36777777788888888898888888877643