Citrus Sinensis ID: 045071

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHcccHHHHHHHccccHHHHHHcccHHHHHHHHHcccccccEEEEEccccccccccEEEEccccccccccccccccccccccccccEEEEcccccccccEEEEEcccEEEEEEcccccEEEEEEccccccEEEcccccccccccEEEEEEccccEEEEEEEEcccccccEEEcEEEEEEEEcccEEEEEEEccccccccccccccEEEEccEEEEEcccccEEEEEEccccEEEEEEccccccccccEEEEEccEEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEcHHHHHHHccccccccEEEEEEccEEEEEEEcccEEEEEEcccccEEEccccccccccccccccccccccEEEEEEcccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEcccEEEEEEccccccEEEEEccccHHHcccccccccccccEEEEEEccccEEEEEEEcccccccEEEEcccccEEEEEcccccccccccccccccccccccEEEEccEEEEEEEcccEEEEEEcccccEEEEccccccccccccEEEEccEEEEEEEEEccccccccEEEEEEEccccccEEEEHcccHHHHHHHHcccccccEEEEEcccEEEEEEccccEEEEEEccccEEEEcccccccccccccccccccccEEEEEEccccccHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
meafntlsmaspfsytftssssscgsgsgsgtatsnnpmftacpwmdsriwskLPQRLLDRVlaflpppafFRARAVCKRWYGLLFSNSFLELYIhvsprhhwflffnqktplikttSYIYTTNNNSIRSAAAATCcegylfdphelswyrisfalvpsefspasssgglvcwvsdhagaktlilcnpvtgslsqlpptlrprlfpsiglkvtptavdvtvagddlispyavknlssesfhidaggffslwgttsslprlcslesgrmvqvngkfycmnyspfsvlaydisanawfniqapmrrflrspslldsngKLILVAAVEKsklnvpkslRLWSLQACGTLWAEIERMPQQLYAQFAEIeagngfdtighGEFIVIVIRGSDKALLFDLCMKswqwiprcpyvqanncggnygdgegelhgfayeprlatpvTALLdqltlpfqsfsg
Flexible Loop (DISEMBL)
meafntlsmaspFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKsklnvpkslrLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG
Low Complexity Region (SEG)
MEAFNTLSMASPFsytftssssscgsgsgsgtatsNNPMFTACPWMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKttsyiyttnnnsiRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG
Disordered region (IsUnstruct)
**************************************MFTACPWMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPF*****
Disordered Region (DISOPRED)
*************************************************IWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSF**
Disordered Region (DISEMBL)
********MASPFSY******************TSNNPMFTACPWMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG
Disordered Region (DISPRO)
*****TLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	453	2.2.26 [Sep-21-2011]
Q39090	442	Protein UNUSUAL FLORAL OR	yes	no	0.876	0.898	0.671	1e-156
Q9LFV5	448	F-box/kelch-repeat protei	no	no	0.737	0.745	0.265	2e-26
Q9FZK1	467	F-box only protein 6 OS=A	no	no	0.701	0.680	0.254	3e-23
Q9M310	411	F-box/kelch-repeat protei	no	no	0.759	0.836	0.254	3e-20
Q9SMZ3	457	F-box only protein 13 OS=	no	no	0.743	0.737	0.216	2e-11
Q9FHS6	403	F-box/kelch-repeat protei	no	no	0.739	0.831	0.212	3e-08
O49279	374	SKP1-interacting partner	no	no	0.763	0.925	0.219	1e-07
Q9FGY4	359	F-box protein At5g49610 O	no	no	0.496	0.626	0.214	0.0003
Q9FVS1	352	F-box/kelch-repeat protei	no	no	0.461	0.593	0.221	0.0006

>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2

 Score =  551 bits (1419), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/405 (67%), Positives = 313/405 (77%), Gaps = 8/405 (1%)

Query: 45  WMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSP-RHHW 103
           WMD RIWSKLP  LLDRV+AFLPPPAFFR R VCKR+Y LLFSN+FLE Y+ + P RH+ 
Sbjct: 41  WMDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNC 100

Query: 104 FLFFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSP 163
           FLFF  KT      SYIY     +   +  A   EG+LFDP+E+ WYR+SFA +PS F P
Sbjct: 101 FLFFKHKT----LKSYIYKRGGTNDDDSNKA---EGFLFDPNEIRWYRLSFAYIPSGFYP 153

Query: 164 ASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAG 223
           + SSGGLV WVS+ AG KT++LCNP+ GS+SQLPP  RPRLFPSIGL VTPT++DVTVAG
Sbjct: 154 SGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAG 213

Query: 224 DDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPF 283
           DDLISPYAVKNLSSESFH+DAGGFFSLW  TSSLPRLCSLESG+MV V GKFYCMNYSPF
Sbjct: 214 DDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSPF 273

Query: 284 SVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQAC 343
           SVL+Y+++ N W  IQAPMRRFLRSPSLL+S G+LILVAAVEKSKLNVPKSLRLWSLQ  
Sbjct: 274 SVLSYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQD 333

Query: 344 GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIP 403
              W EIERMPQ LY QFA  E G GF+ +G+ EF++IV+RG+   LLFD+  KSW W+P
Sbjct: 334 NATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLWVP 393

Query: 404 RCPYVQANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPF 448
            CPY  +       G     L GFAY+P L TPV +LLDQLTLPF
Sbjct: 394 PCPYSGSGGGSSGGGSDGEVLQGFAYDPVLTTPVVSLLDQLTLPF 438

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Considered as a meristem identity factor required for normal growth of the young floral meristem. Acts together with LEAFY to positively regulate the B class floral homeotic genes APETALA3 and PISTILLATA. In this way, operates as a region-specific regulator for petal and stamen development. Alternatively, may play a role as a negative regulator of the C class floral homeotic genes. Interacts together with the SKP1-like protein ASK1 to form a ubiquitin E3 ligase complex and could indirectly promote the ubiquitination and degradation of specific proteins controlling the floral primordia development like repressors of B class floral homeotic genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 154/369 (41%), Gaps = 35/369 (9%)

Query: 46  MDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFL 105
           M+  IW+ LP+ LL+ +LA +PP   FR R+VCK+W  +L  NSFL+ + +VS      L
Sbjct: 99  MEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLL 158

Query: 106 FFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPS-EFSPA 164
            F + +P I   S                      +F     +WY+I F  +P   F   
Sbjct: 159 TFWKNSPQIPQCS----------------------VFSLPLKTWYKIPFTFLPPWAFWLV 196

Query: 165 SSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGD 224
            SSGGLVC+          ++CNP+  S   LP     +    I +          +A  
Sbjct: 197 GSSGGLVCFSGLDGLTFRTLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSDKSFKVIATS 256

Query: 225 DLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFS 284
           D+   Y  K+L +E +          W     +P + +L S +M   + + Y    SP  
Sbjct: 257 DI---YGDKSLPTEVYDSKTDK----WSLHQIMPAV-NLCSSKMAYCDSRLYLETLSPLG 308

Query: 285 VLAYDISANAWFNIQAPMRRFLRSPSLL-DSNGKLILVAAVEKSKLNVPKSLRLWSLQAC 343
           ++ Y + +  W +I A   R L    L+  +  +L LV  +     +  +S+R+W L   
Sbjct: 309 LMMYRLDSGQWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRI--GLYSTLQSMRIWELDHT 366

Query: 344 GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIP 403
              W EI RMP + +     + A   F+  G    I        K LL+++  K W WI 
Sbjct: 367 KVSWVEISRMPPKYFRALLRLSA-ERFECFGQDNLICFTSWNQGKGLLYNVDKKIWSWIS 425

Query: 404 RCPYVQANN 412
            C     N+
Sbjct: 426 GCALQSCNS 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 161/373 (43%), Gaps = 55/373 (14%)

Query: 46  MDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFL 105
           MD  IW + PQ L + V++ LP   FF+ RAVC++W  L+ S+SF   +           
Sbjct: 112 MDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCF----------- 160

Query: 106 FFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSE--FSP 163
                T L +T  + YT  + ++ S        G ++DP    W+      +P +    P
Sbjct: 161 -----TELPQTIPWFYTITHENVNS--------GQVYDPSLKKWHHPIIPALPKKSIVLP 207

Query: 164 ASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKV-TPTAVDVTVA 222
            +S+GGLVC++    G +   + NP+T S  +L         P+   KV +  AV +T+ 
Sbjct: 208 MASAGGLVCFLD--IGHRNFYVSNPLTKSFREL---------PARSFKVWSRVAVGMTLN 256

Query: 223 GDDLISPYAVKNLSSESFHIDAGGFFSLW---GTTSS---LPRLCSLESGRMVQVNGKFY 276
           G+     Y V  +  E  +       ++W   GT  S   LP L + +S + V ++   Y
Sbjct: 257 GNSTSHGYKVLWVGCEGEYEVYDSLSNVWTKRGTIPSNIKLPVLLNFKS-QPVAIHSTLY 315

Query: 277 CMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLR 336
            M   P  +L+YD+ +  W     P    L   +L     +L+LV  + K   N    + 
Sbjct: 316 FMLTDPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAACGERLMLVGLLTK---NAATCVC 372

Query: 337 LWSLQACGTLWAEIERMPQ----QLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLF 392
           +W LQ    LW E++RMP     + Y +   +   N     G    + +  R  ++ + +
Sbjct: 373 IWELQKMTLLWKEVDRMPNIWCLEFYGKHIRM---NCLGNKGCLILLSLRSRQMNRLITY 429

Query: 393 DLCMKSWQWIPRC 405
           +   + W  +P C
Sbjct: 430 NAVTREWTKVPGC 442

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 163/405 (40%), Gaps = 61/405 (15%)

Query: 52  SKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIH--VSPRHHWFLFFNQ 109
           S LP  LL+R+L+FLP  + FRA  VCKRW  ++ S  FL  + +  VS R  +F+F   
Sbjct: 41  SLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTT 100

Query: 110 KTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGG 169
             P                          GY +DP    WY      + +     +SS G
Sbjct: 101 DDP-------------------------SGYAYDPIIRKWYSFDLPCIETSNWFVASSCG 135

Query: 170 LVCWVSDHAGAKTLILCNPVTGSLSQL--PPTLRPRLFPSIGLKVTPTAVDVTVAGDDL- 226
           LVC++ +    K + + NP+T     L  PP  +   + ++   V      V  A     
Sbjct: 136 LVCFMDNDCRNK-IYVSNPITKQWRTLIEPPGHKSTDYTAMSTSVNRANQAVNRANRSYS 194

Query: 227 ISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESG-----RMVQVNGKFYCMNYS 281
           +S    K +    F  D         T +    +  + SG       V  N   Y M YS
Sbjct: 195 VSIVKSKQVPGNFFQWDLSIHLYSSETMTWTTLVNDVLSGWRGGNESVICNNVLYFMIYS 254

Query: 282 P------FSVLAYDISANAWFNIQAPMRRFLRSP------SLLDSNGKLILVAAVEK-SK 328
                    ++A ++S+    +    MR F+  P       L++   +L++V  + K  +
Sbjct: 255 TGGSDHRHGLIASNLSSIGSPSSGILMRSFIPMPCSLTCGRLMNLRERLVIVGGIGKHDR 314

Query: 329 LNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDK 388
             V K + +W L+  G  W E+ +MPQ+ +  F E +    F + G  + + I   GS  
Sbjct: 315 PEVIKGIGIWVLK--GKEWVEMAKMPQRFFQGFGEFD--EVFASSGTDDLVYIQSYGSPA 370

Query: 389 ALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRL 433
            L FD+ +K W+W  +CP  +                GF +EPRL
Sbjct: 371 LLTFDMNLKYWRWSQKCPVTKKFPL--------QLFTGFCFEPRL 407

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ3|FBX13_ARATH F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 173/435 (39%), Gaps = 98/435 (22%)

Query: 54  LPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPL 113
           L   +L+RVL++LP   FFR  +VCKRW     S SF      +  R  WF   +  +  
Sbjct: 70  LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDNDS-- 127

Query: 114 IKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCW 173
             ++S+++ +  NS ++         +  D                 F P +SSGGL+C+
Sbjct: 128 -NSSSFVFDSTENSWKNLNRRDFLHHHRQD-----------------FIPVASSGGLLCY 169

Query: 174 VSDHAGAKTLILCNPVTGSLSQLPPT-----------------LRPRLF---------PS 207
               +G    +L NP+TGS   +P                   + P  +         P+
Sbjct: 170 RCSISG--DFLLRNPLTGSSRDIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTISGEIPN 227

Query: 208 IGLKVTPTAVDVTVAGDDLISPYAVKNLSS---ESFHIDAGG--FFSLWGT----TSSLP 258
           +  K+  +  D      +L S   VKN  S   + +  D+G   F S  G     +++L 
Sbjct: 228 LSFKIYESNADSWSKDQELES---VKNNDSSLHDDYDTDSGTVYFLSKQGNVVVASNNLQ 284

Query: 259 RLCSLESGRMVQVNGK----FYCMNYSPFSVLAYDISANAWFNIQAPMRRFLR-SPSLLD 313
           R  S +   ++ V  +    ++  +Y   +++A D++   +  +   +  FL  S  L++
Sbjct: 285 RSPSKQYSSVITVTDEAEIVYFLSSYG--TIVACDLTKRCFTELPKLLPPFLEYSIDLVE 342

Query: 314 SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMP----QQLYAQFAEIEAGNG 369
             G + ++     S+     SLR+W L      W ++  +P     +LY +  +I    G
Sbjct: 343 CEGTMYVILL---SEFFESASLRIWRLDN-NREWVQVGMLPPALSHELYGKKGDINCVGG 398

Query: 370 FDTIGHGEFIVIVIRGSD-----KALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGE- 423
                 G  I++    S      +  ++DL  + W  +P+C           + DGE   
Sbjct: 399 -----AGNKILVCFNASPPEVYCRYFVYDLVAEEWNELPKC-----------FKDGEAVD 442

Query: 424 -LHGFAYEPRLATPV 437
            +   +++PR+   V
Sbjct: 443 FVSALSFQPRIEATV 457

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHS6|FK119_ARATH F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 144/381 (37%), Gaps = 46/381 (12%)

Query: 46  MDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFL 105
           +D  IWS LP  LL+ +L+ LP       R++ +    L+ S SF+  +    P      
Sbjct: 43  LDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSLP------ 96

Query: 106 FFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISF---ALVPSEFS 162
                       S++  ++  S  S          LF+P+ +SW  +       +    S
Sbjct: 97  ------------SFLLLSHPQSFNSFP--------LFNPNLISWCTLPLPRSLSLTCASS 136

Query: 163 PASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVA 222
             SSS GL+C+    +   +L + NP+T S   +     P  F  + L  +P    +   
Sbjct: 137 LLSSSNGLLCFSLSPSSVSSLSIFNPLTRSSRSIKLPCYPFPFELLSLVTSPKGYKIFT- 195

Query: 223 GDDLISPYAVKNLSSESFHIDAG--GFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNY 280
               +   +    S      D+G   +    G    LPR  + +    V  NG  Y    
Sbjct: 196 ----LCSSSSAASSRSVCLYDSGDRSWRKFGGVDQVLPRGFNQDG---VFYNGSLYFARS 248

Query: 281 SPFSVLAYDISANAWFNIQA----PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLR 336
            PF +++ D++   W         P    +    L+    K IL          + +S++
Sbjct: 249 EPFLIVSVDLNDGKWTTATGDGVFPADDEITFARLVSDPEKKILYMVGGIGSNGICRSIK 308

Query: 337 LWSLQACGTLWAEIERMPQQLYAQFAEIEAGN--GFDTIGHGEFIVIVIRGSDKALLFDL 394
           +W  +     W E+E +P  +  +F  +   N      + H E I +      + L F +
Sbjct: 309 IWEFKEETESWIEVETLPDIVCRKFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHV 368

Query: 395 CMKSWQWIPRCPYVQAN-NCG 414
             ++W W+P+CP +    +CG
Sbjct: 369 GRRTWHWVPKCPSLPEKWSCG 389

Arabidopsis thaliana (taxid: 3702)

>sp|O49279|SKI15_ARATH SKP1-interacting partner 15 OS=Arabidopsis thaliana GN=SKIP15 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 163/414 (39%), Gaps = 68/414 (16%)

Query: 46  MDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFL 105
           M+S   + LP   L ++ + LP       R+VCK +  LL S  F+E+     P +   L
Sbjct: 1   MESSPVNCLPPDSLHQIFSSLPIRDIMICRSVCKFFNQLLTSQCFIEIISTRPPLNLLAL 60

Query: 106 FFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVP--SEFSP 163
                    + +   + TN   IR          +++DP +  W+R +   +P  S    
Sbjct: 61  RPPHHHHSHRHSGNGHATN---IRPYI-------HVYDPEQNQWFRFNLDFLPFRSPQPV 110

Query: 164 ASSSGGLVCW---VSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVT 220
           ASSSG +  W   +     +K+L+ CNP+T            ++ P +G   +  +   T
Sbjct: 111 ASSSGLIYLWGDSIDLAESSKSLVACNPLTRQF---------KVLPQLG---SAWSRHGT 158

Query: 221 VAGDDLISPYAVKNLSSESFH--IDAGGFFSLWGTTSSLPR-----------LCSLESGR 267
           V  D +     +  L++  +   + A  +        S PR           LC + S  
Sbjct: 159 VLVDSVNRVMVLTELAALYYSGTVVANQWLKFSSNLPSKPRSPVLMSSSVFALCDVGSPW 218

Query: 268 MVQVNGKFYCMNYSPFSVLAYD---ISANAWFNIQAPMRRFLRSPSLLDSNG--KLILVA 322
             Q   K +    +  ++   +   +  + W +I   ++R    P LL  NG  KL+++ 
Sbjct: 219 RSQ--WKLFSCKLTNLTITHTNWVCLEKHEWGDIFDIIKR----PRLLRGNGDSKLLMIG 272

Query: 323 AVEKS-KLN-VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIV 380
            ++ +  LN    ++ +  L      W E  RMP ++Y  F E    + F   G G+ + 
Sbjct: 273 GLKSTFSLNPACSTILILRLDLESLEWEEAGRMPLEMYRGFQE---SSKFKVFGGGDRVY 329

Query: 381 IVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLA 434
              +   K  ++D C + W+WI   P           G  +G   GF ++ +L 
Sbjct: 330 FSAKRMGKLAMWD-CWQGWRWIEGVP-----------GYADGLCRGFVFDAKLT 371

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 99/270 (36%), Gaps = 45/270 (16%)

Query: 46  MDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFL 105
           MD++  +  P  ++ ++LA LP  + FR ++VCK WY L     F  L+  +S +    +
Sbjct: 1   MDNQKGALFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLV 60

Query: 106 FFNQKTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPAS 165
                  +  ++S I   N   +                       +S   V        
Sbjct: 61  -----AEVSDSSSLICVDNLRGVSE---------------------LSLDFVRDRVRIRV 94

Query: 166 SSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTL-RP--RLFPSIGLKVTPTAVDVTVA 222
           SS GL+C  S         +CNP T    +LP +  RP  R +P     +   A D++  
Sbjct: 95  SSNGLLC-CSSIPEKGVYYVCNPSTREYRKLPKSRERPVTRFYPDGEATLVGLACDLSKN 153

Query: 223 GDDLISPYAVKNLSSESFHIDAGGFFSL--------WGTTSSLPRLCS---LESGRMVQV 271
             +++     ++          G F  L        W    S+   CS   +   ++V V
Sbjct: 154 KFNVVLAGYHRSFGQRP----DGSFICLVFDSESNKWRKFVSVLEECSFTHMSKNQVVFV 209

Query: 272 NGKFYCMNYSPFSVLAYDISANAWFNIQAP 301
           NG  + +      +LA D+  + W  I  P
Sbjct: 210 NGMLHWLMSGLCYILALDVEHDVWRKISLP 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVS1|FBK23_ARATH F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 92/253 (36%), Gaps = 44/253 (17%)

Query: 50  IWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQ 109
           +W  LP  LL  V+ FL      RA  VCK W+    S       + V  +  W ++F  
Sbjct: 12  LWKDLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVS-------VRVIDKSPWLMYF-- 62

Query: 110 KTPLIKTTSYIYTTNNNSIRSAAAATCCEGYLFD-PHELSWYRISFALVPSEFSPASSSG 168
             P  K T   Y  +N           C+ Y  + P  L  + + +          S  G
Sbjct: 63  --PETKNTYDFYDPSN-----------CKKYTMELPKSLVGFIVRY----------SKDG 99

Query: 169 GLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLIS 228
            L+    D   +   +L NP T  +  LP       +  +G    PT+ +  V     I 
Sbjct: 100 WLLMSQED---SSHFVLFNPFTMDVVALPFLHLFTYYQLVGFSSAPTSSECVVFT---IK 153

Query: 229 PYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAY 288
            Y   +++  ++        ++W +     +   ++   +V  NG FYC+N     V  +
Sbjct: 154 DYDPGHVTIRTWSPGQ----TMWTSMQVESQFLDVDHNNVVFSNGVFYCLNQRN-HVAVF 208

Query: 289 DISANAWFNIQAP 301
           D S   W  +  P
Sbjct: 209 DPSLRTWNVLDVP 221

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
356512229	430	PREDICTED: protein UNUSUAL FLORAL ORGANS	0.944	0.995	0.712	0.0
224137788	439	predicted protein [Populus trichocarpa]	0.953	0.984	0.711	0.0
225423605	436	PREDICTED: protein UNUSUAL FLORAL ORGANS	0.962	1.0	0.708	0.0
224071037	436	predicted protein [Populus trichocarpa]	0.944	0.981	0.696	0.0
356524996	440	PREDICTED: protein UNUSUAL FLORAL ORGANS	0.964	0.993	0.708	1e-179
28624856	449	proliferating floral organs protein [Lot	0.973	0.982	0.670	1e-177
297738022	419	unnamed protein product [Vitis vinifera]	0.924	1.0	0.688	1e-173
82734195	431	fimbriata protein [Misopates orontium]	0.949	0.997	0.654	1e-171
169647569	453	DOUBLE TOP [Petunia x hybrida]	0.964	0.964	0.628	1e-170
350535821	455	DOUBLE TOP [Solanum lycopersicum] gi|169	0.980	0.975	0.626	1e-168

>gi|356512229|ref|XP_003524823.1| PREDICTED: protein UNUSUAL FLORAL ORGANS-like [Glycine max]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/455 (71%), Positives = 364/455 (80%), Gaps = 27/455 (5%)

Query: 1   MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLD 60
           ME F+  SM+SPFSYTF  S        G+GT+  +    T+ PWM+SRIWSKLPQRLLD
Sbjct: 1   MEGFHP-SMSSPFSYTFPIS--------GAGTSNYS----TSTPWMNSRIWSKLPQRLLD 47

Query: 61  RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYI 120
           RV+AFLPPPAFFRAR VCKRWY LLFSN+FLELY+ VSP  HWFLFF          SYI
Sbjct: 48  RVIAFLPPPAFFRARCVCKRWYALLFSNTFLELYLQVSPHQHWFLFFKHHK---TRKSYI 104

Query: 121 YTTNNNSIRSAAA--ATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA 178
           Y  NNN             EGYLFDP+E++WYRISFALVPS FSPASSS GL+CWVSD A
Sbjct: 105 YKNNNNGTSGGCGHHGGAFEGYLFDPYEMAWYRISFALVPSGFSPASSSAGLLCWVSDEA 164

Query: 179 GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSE 238
           G KT++L NP+ GSL+QLPPTLRPRLFPSIGL ++PT +DVTVAGDD+ISPYAVKNL+SE
Sbjct: 165 GPKTMLLSNPLIGSLTQLPPTLRPRLFPSIGLTISPTCIDVTVAGDDMISPYAVKNLTSE 224

Query: 239 SFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNI 298
           SFHID GGFFSLWGTTSSLPRLCSLESGRMV   GKFYCMN SPFSVLAYDI++N WF I
Sbjct: 225 SFHIDGGGFFSLWGTTSSLPRLCSLESGRMVYAEGKFYCMNCSPFSVLAYDITSNTWFKI 284

Query: 299 QAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLY 358
           QAPMRRFLRSP+L++  GKL+LVAAVEKSKLNVPKSLR+WSLQACGT+W E ERMPQQLY
Sbjct: 285 QAPMRRFLRSPNLVECKGKLLLVAAVEKSKLNVPKSLRVWSLQACGTMWVESERMPQQLY 344

Query: 359 AQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYG 418
            QFAE+E GNGF+ +GHGEFIVI+IRG+DKALLFD+C K WQWIP CPY+  +       
Sbjct: 345 VQFAELEDGNGFECVGHGEFIVIMIRGTDKALLFDICRKRWQWIPPCPYIAHDGF----- 399

Query: 419 DGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG 453
               ELHGFAYEPRLATPVT LLDQL LPFQSF+ 
Sbjct: 400 ----ELHGFAYEPRLATPVTGLLDQLALPFQSFNA 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137788|ref|XP_002326440.1| predicted protein [Populus trichocarpa] gi|222833762|gb|EEE72239.1| predicted protein [Populus trichocarpa]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/457 (71%), Positives = 371/457 (81%), Gaps = 25/457 (5%)

Query: 1   MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLD 60
           ME   + SM S FSYTFT      G+ S   T T  N       WMD+RIWSKLPQ L+D
Sbjct: 1   MEGAFSNSMPSHFSYTFTP-----GTSSAYVTDTVTNT------WMDTRIWSKLPQSLID 49

Query: 61  RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYI 120
           RV+AFLPPPAFFRAR VCKRWY LLFSN+FLELYI +SPR HWFLFF  K+      SYI
Sbjct: 50  RVIAFLPPPAFFRARCVCKRWYSLLFSNNFLELYIQISPRRHWFLFFKHKS----LKSYI 105

Query: 121 YTTNNNSIRSAAAATCC----EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSD 176
              N+N+ R +   T      EGYLFDP++++WYRISF LVPS FSPA++SGGL+CWVSD
Sbjct: 106 CGNNSNTTRGSGGQTSTTNIFEGYLFDPYDIAWYRISFPLVPSGFSPAAASGGLICWVSD 165

Query: 177 HAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLS 236
            AGAK++ILCNP+ GSLSQLPPTLRPRLFPS GLKV P+++DV VAGDDLISPYAVKNLS
Sbjct: 166 EAGAKSIILCNPLIGSLSQLPPTLRPRLFPSTGLKVGPSSIDVAVAGDDLISPYAVKNLS 225

Query: 237 SESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWF 296
           +ESFHIDAGGF+SLWGTTSSLPRLCSLESG+MV V+ +FYCMNY+PFSVLAY+I+AN+W 
Sbjct: 226 TESFHIDAGGFYSLWGTTSSLPRLCSLESGQMVCVDDRFYCMNYNPFSVLAYEIAANSWC 285

Query: 297 NIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQ 356
            IQAPMRRFLRSPSL++S  KLILVAAVEKSKLNVPKSLRLWSLQACGT W EIERMPQQ
Sbjct: 286 KIQAPMRRFLRSPSLVESMEKLILVAAVEKSKLNVPKSLRLWSLQACGTTWVEIERMPQQ 345

Query: 357 LYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGN 416
           LY QF E+EAG+GFD +GHGEFI I+IRGSDKALLFD+  K+WQWIP CPY+  N+ GG 
Sbjct: 346 LYQQFEEMEAGHGFDCVGHGEFIAIIIRGSDKALLFDILRKAWQWIPPCPYM--NHGGG- 402

Query: 417 YGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG 453
              G+ ELHGFAYEP + TPVT LLDQLT+PFQSFSG
Sbjct: 403 ---GDDELHGFAYEPTVTTPVTGLLDQLTIPFQSFSG 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423605|ref|XP_002275773.1| PREDICTED: protein UNUSUAL FLORAL ORGANS [Vitis vinifera]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/453 (70%), Positives = 365/453 (80%), Gaps = 17/453 (3%)

Query: 1   MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLD 60
           M+AFNT  +  P SY+FTSS  S  SG+ + T  +        PWMDSRIWSKLPQRL+D
Sbjct: 1   MDAFNT-PITLPMSYSFTSSGGSTSSGTAANTNIN--------PWMDSRIWSKLPQRLID 51

Query: 61  RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYI 120
           RV+AFLPPP FFRARAVCKRWYGLLFS+SFLELY+ +SPR HWFLFF  K+      SYI
Sbjct: 52  RVIAFLPPPDFFRARAVCKRWYGLLFSSSFLELYLQISPRRHWFLFFKHKS----LKSYI 107

Query: 121 YTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGA 180
           Y  +      A     CEGYLFDP+  SWYR+SF+L+PS FSPASSSGGL+CWVSD AG 
Sbjct: 108 YRNSGGGSDRAN----CEGYLFDPYSNSWYRLSFSLIPSGFSPASSSGGLICWVSDEAGP 163

Query: 181 KTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF 240
           K L LCNP+ GSLSQLPPTLRPRLFPSIGL VTP+++DV VAGDDLISPYAVKNL++ESF
Sbjct: 164 KGLFLCNPLVGSLSQLPPTLRPRLFPSIGLTVTPSSIDVAVAGDDLISPYAVKNLTTESF 223

Query: 241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQA 300
           HID GGF+S+WGTTSSLPRLCSLESGRMV V G+FYCMNYSPFSVLAYDI+AN W+ IQA
Sbjct: 224 HIDGGGFYSIWGTTSSLPRLCSLESGRMVHVQGRFYCMNYSPFSVLAYDIAANNWWKIQA 283

Query: 301 PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQ 360
           PMRRFLRSPSL++S G+LILVA VEKSKLNVPKSLR+W LQACGT W EIERMPQQLY Q
Sbjct: 284 PMRRFLRSPSLVESRGRLILVATVEKSKLNVPKSLRIWGLQACGTTWVEIERMPQQLYLQ 343

Query: 361 FAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDG 420
           FAE+E   GFD +GHGEFI I+IRGSDKALLF++  K+WQWIP CP++  +    +    
Sbjct: 344 FAEVEGSQGFDCVGHGEFIAIMIRGSDKALLFNIYGKTWQWIPPCPFLSGSGGSSSSSGE 403

Query: 421 EGELHGFAYEPRLATPVTALLDQLTLPFQSFSG 453
             ELHGFAYEPRLATPVT LLDQLTLPFQ F+G
Sbjct: 404 GCELHGFAYEPRLATPVTTLLDQLTLPFQPFNG 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071037|ref|XP_002303341.1| predicted protein [Populus trichocarpa] gi|222840773|gb|EEE78320.1| predicted protein [Populus trichocarpa]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/454 (69%), Positives = 364/454 (80%), Gaps = 26/454 (5%)

Query: 3   AFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLDRV 62
           AFN  +M  PFSYTFT            GT+++N       PWMD+RIWSKLPQ L+DRV
Sbjct: 4   AFNN-AMLLPFSYTFT-----------PGTSSTNVTDSVTSPWMDTRIWSKLPQTLIDRV 51

Query: 63  LAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYT 122
           LAFLPPPAFFRAR VCKRWYGLLFSN+FLELYI +SPR HWFLFF  K+      S IY 
Sbjct: 52  LAFLPPPAFFRARCVCKRWYGLLFSNNFLELYIQISPRRHWFLFFKHKS----LKSCIYR 107

Query: 123 TNNNSIRSAA---AATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAG 179
            NN++  S      A  CEGYLFDP++++WYRISF+LVPS FSPA++SGGL+CWVSD AG
Sbjct: 108 NNNSTSDSGGKTMTANICEGYLFDPYDIAWYRISFSLVPSGFSPAAASGGLICWVSDEAG 167

Query: 180 AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSES 239
           AK++ILCNP++GSLSQLPPTLRPRLFPSIGLKV P+++DV VAGDDLISPYAVKNLS+ES
Sbjct: 168 AKSIILCNPLSGSLSQLPPTLRPRLFPSIGLKVGPSSIDVAVAGDDLISPYAVKNLSTES 227

Query: 240 FHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQ 299
           FHID GGF+SLWGTTSSLPRLCSLESG+MV V+ +FYCMNY+PFSVLAY+I+AN+W  IQ
Sbjct: 228 FHIDVGGFYSLWGTTSSLPRLCSLESGQMVCVDDRFYCMNYNPFSVLAYEIAANSWCKIQ 287

Query: 300 APMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYA 359
           APMRRFLRSP L++S GKLILVAAVEKSKLNVPKSLRLW LQ CGT W EIERMPQQLY 
Sbjct: 288 APMRRFLRSPRLVESMGKLILVAAVEKSKLNVPKSLRLWRLQPCGTTWIEIERMPQQLYL 347

Query: 360 QFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGD 419
           QFAE+  G+GFD +GHGEFI I+IRGS K LLFD+  K WQWIP C      +C    GD
Sbjct: 348 QFAELGGGHGFDCVGHGEFIAIIIRGSIKVLLFDILRKMWQWIPPC------SCIDGVGD 401

Query: 420 GEGELHGFAYEPRLATPVTALLDQLTLP-FQSFS 452
            + ELHGFAYEP + TPVT LLDQ+T+P FQSF+
Sbjct: 402 DDDELHGFAYEPTVTTPVTGLLDQITIPIFQSFT 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524996|ref|XP_003531113.1| PREDICTED: protein UNUSUAL FLORAL ORGANS-like [Glycine max]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 323/456 (70%), Positives = 365/456 (80%), Gaps = 19/456 (4%)

Query: 1   MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLD 60
           ME F+  SM SPFSYTF  S +   + S + T TS +   T+ PWM+SRIWSKLPQRLLD
Sbjct: 1   MEGFHP-SMTSPFSYTFPISDAGTSNFSTTTTGTSYS---TSTPWMNSRIWSKLPQRLLD 56

Query: 61  RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYI 120
           RVLAFLPPPAFFRAR VCKRWY LLFSN+FLELY+ VSP  HWFLFF          SYI
Sbjct: 57  RVLAFLPPPAFFRARCVCKRWYALLFSNTFLELYLQVSPHQHWFLFFKHHK---TRKSYI 113

Query: 121 YTTNNNSIRSAAAAT---CCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDH 177
           Y  NNN+  S+         EGYLFDP+E+SWYRI FALVPS FSPASSS GL+CWVSD 
Sbjct: 114 YKNNNNNNGSSDGCGHIGAFEGYLFDPYEMSWYRIFFALVPSGFSPASSSAGLLCWVSDE 173

Query: 178 AGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSS 237
           AG KT++L NP+ GSL+QLPPTLRPRLFPSIGL + PT +DVTVAGDD+ISPYAVKNL+S
Sbjct: 174 AGPKTMLLSNPLIGSLTQLPPTLRPRLFPSIGLTIRPTCIDVTVAGDDMISPYAVKNLTS 233

Query: 238 ESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFN 297
           ESFHID GGF+SLWGTT+SLPRLCSLESGRMV   GK YCMN SPFS+LAYDI++N WF 
Sbjct: 234 ESFHIDGGGFYSLWGTTASLPRLCSLESGRMVYAEGKLYCMNCSPFSILAYDITSNTWFK 293

Query: 298 IQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQL 357
           IQAPMRRFLRSP+L++  GKL+LVAAVEKSKLNVPKSLR+WSLQACGT+W E ERMPQQL
Sbjct: 294 IQAPMRRFLRSPNLVECKGKLLLVAAVEKSKLNVPKSLRVWSLQACGTMWVESERMPQQL 353

Query: 358 YAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNY 417
           Y QFAE+E GNGF+ +GHGEFIVI+IRG+DKALLFD+C K WQWIP CPY+  +      
Sbjct: 354 YVQFAELEDGNGFECVGHGEFIVIMIRGTDKALLFDICRKRWQWIPPCPYIAHDGF---- 409

Query: 418 GDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG 453
                ELHGFAYEPRLATPVT LLDQL LPFQSF+ 
Sbjct: 410 -----ELHGFAYEPRLATPVTGLLDQLALPFQSFNA 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28624856|gb|AAN87351.1| proliferating floral organs protein [Lotus japonicus] gi|60100336|gb|AAX13295.1| UFO-like protein [Lotus japonicus]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/461 (67%), Positives = 362/461 (78%), Gaps = 20/461 (4%)

Query: 1   MEAFN-TLSMASPFSYTFTSSSSSCG-------SGSGSGTATSNNPMFTACPWMDSRIWS 52
           ME F+ +++MASPF YTF  S+   G       S + +    +    +   PWM+SRIWS
Sbjct: 1   MEGFHPSMTMASPFPYTFPISAGGIGVGVVGVGSSNLTTPTPTATGTYNNTPWMNSRIWS 60

Query: 53  KLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTP 112
           KLPQ+LLDRV+AFLP PAFFRAR+VCKRWY LLFSN+FLELY+H+SPR HWF+FF  KT 
Sbjct: 61  KLPQKLLDRVIAFLPTPAFFRARSVCKRWYSLLFSNTFLELYLHLSPRRHWFIFFKHKT- 119

Query: 113 LIKTTSYIYTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVC 172
             +        NNN I  +A    CEGYLFDP E++WYRISFA++P  FSPASSS GL+C
Sbjct: 120 --RKNYIYKNNNNNIITGSAGTASCEGYLFDPAEMAWYRISFAMIPPGFSPASSSAGLLC 177

Query: 173 WVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAV 232
           W SD AG KT++L NP+ GSL+QLPPTLRPRLFPSIGL +TPT +DVTVAGDD+ISPYAV
Sbjct: 178 WASDEAGPKTMLLSNPILGSLTQLPPTLRPRLFPSIGLTITPTCIDVTVAGDDMISPYAV 237

Query: 233 KNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISA 292
           KNL+SESFHID GGF+S+WGTTS LPRLCSLESGRMV   GKFYCMN SPFSVLAYDI++
Sbjct: 238 KNLTSESFHIDGGGFYSMWGTTSPLPRLCSLESGRMVCAEGKFYCMNCSPFSVLAYDIAS 297

Query: 293 NAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIER 352
             WF IQAPMRRFLRSP+L++   KL+LVAAVEKSKLNVP+SLR+W+LQACGT+W E ER
Sbjct: 298 TTWFKIQAPMRRFLRSPNLVECREKLMLVAAVEKSKLNVPRSLRVWTLQACGTMWVESER 357

Query: 353 MPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANN 412
           MPQQLY QFAEIE GNGF+ +GHGEF+VI+I+G+DKALL+DL  K WQWIP CPY     
Sbjct: 358 MPQQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCPYA---- 413

Query: 413 CGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG 453
                G    ELHGFAYEPRLATPVTALLDQL LPFQS++ 
Sbjct: 414 -----GYDGFELHGFAYEPRLATPVTALLDQLALPFQSYNA 449

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738022|emb|CBI27223.3| unnamed protein product [Vitis vinifera]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 312/453 (68%), Positives = 355/453 (78%), Gaps = 34/453 (7%)

Query: 1   MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLD 60
           M+AFNT  +  P SY+FTSS  S  SG+ + T  +        PWMDSRIWSKLPQRL+D
Sbjct: 1   MDAFNT-PITLPMSYSFTSSGGSTSSGTAANTNIN--------PWMDSRIWSKLPQRLID 51

Query: 61  RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYI 120
           RV+AFLPPP FFRARAVCKRWYGLLFS+SFLELY+ +SPR H                  
Sbjct: 52  RVIAFLPPPDFFRARAVCKRWYGLLFSSSFLELYLQISPRRH------------------ 93

Query: 121 YTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGA 180
                 S R+      CEGYLFDP+  SWYR+SF+L+PS FSPASSSGGL+CWVSD AG 
Sbjct: 94  --CGGGSDRAN-----CEGYLFDPYSNSWYRLSFSLIPSGFSPASSSGGLICWVSDEAGP 146

Query: 181 KTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF 240
           K L LCNP+ GSLSQLPPTLRPRLFPSIGL VTP+++DV VAGDDLISPYAVKNL++ESF
Sbjct: 147 KGLFLCNPLVGSLSQLPPTLRPRLFPSIGLTVTPSSIDVAVAGDDLISPYAVKNLTTESF 206

Query: 241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQA 300
           HID GGF+S+WGTTSSLPRLCSLESGRMV V G+FYCMNYSPFSVLAYDI+AN W+ IQA
Sbjct: 207 HIDGGGFYSIWGTTSSLPRLCSLESGRMVHVQGRFYCMNYSPFSVLAYDIAANNWWKIQA 266

Query: 301 PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQ 360
           PMRRFLRSPSL++S G+LILVA VEKSKLNVPKSLR+W LQACGT W EIERMPQQLY Q
Sbjct: 267 PMRRFLRSPSLVESRGRLILVATVEKSKLNVPKSLRIWGLQACGTTWVEIERMPQQLYLQ 326

Query: 361 FAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDG 420
           FAE+E   GFD +GHGEFI I+IRGSDKALLF++  K+WQWIP CP++  +    +    
Sbjct: 327 FAEVEGSQGFDCVGHGEFIAIMIRGSDKALLFNIYGKTWQWIPPCPFLSGSGGSSSSSGE 386

Query: 421 EGELHGFAYEPRLATPVTALLDQLTLPFQSFSG 453
             ELHGFAYEPRLATPVT LLDQLTLPFQ F+G
Sbjct: 387 GCELHGFAYEPRLATPVTTLLDQLTLPFQPFNG 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82734195|emb|CAJ44131.1| fimbriata protein [Misopates orontium]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/454 (65%), Positives = 355/454 (78%), Gaps = 24/454 (5%)

Query: 1   MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLD 60
           MEAF T     P  Y FT++ ++    +    +T+N       PWMD RIWS+LPQ+L+D
Sbjct: 1   MEAFQTPIFNLPLPYGFTTAPNTINLQNTMIMSTTN-------PWMDCRIWSRLPQKLID 53

Query: 61  RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYI 120
           R++A LPPPAFFRAR+VCKRWY L+FS SFLEL++  SP  HWF+FF Q++  IK   YI
Sbjct: 54  RIIACLPPPAFFRARSVCKRWYSLIFSTSFLELHLQASPIRHWFMFFKQQS--IKQHIYI 111

Query: 121 YTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGA 180
              NNNS  +    T  +GYLFDP  L WYRISF L+P  FSP SSSGGL+CWVS+ +G+
Sbjct: 112 ---NNNST-NERPQTNYQGYLFDPSTLKWYRISFPLIPPGFSPVSSSGGLICWVSEDSGS 167

Query: 181 KTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF 240
           K ++LCNP+T S+ QLP TLRPRL PSIGL +T +++D++ AGDDLISPYAVKNL+SESF
Sbjct: 168 KNILLCNPLTTSVIQLPSTLRPRLCPSIGLSITNSSIDISFAGDDLISPYAVKNLTSESF 227

Query: 241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQA 300
           HID GGF+S+WGTTSSLPRLCSLESGRMV V G+FYCMNYSPFSVL+YDIS N W+ IQA
Sbjct: 228 HIDMGGFYSIWGTTSSLPRLCSLESGRMVHVQGRFYCMNYSPFSVLSYDISLNQWYKIQA 287

Query: 301 PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQ 360
           PMRRFLRSP+L++S GKLILVAAVEKSKLNVPKSLRLW+LQ CGT+W EIERMPQQLY Q
Sbjct: 288 PMRRFLRSPTLVESKGKLILVAAVEKSKLNVPKSLRLWALQECGTIWVEIERMPQQLYIQ 347

Query: 361 FAEIEAGNGFDTIGHGEFIVIVIRGS-DKALLFDLCMKSWQWIPRCPYVQANNCGGNYGD 419
           FAEIE G GF  + HGEF+VI+IRGS DKA++FD C K W W+P+CPY+     GG  GD
Sbjct: 348 FAEIEGGRGFSCVAHGEFVVILIRGSYDKAVMFDFCRKQWVWVPQCPYI-----GG--GD 400

Query: 420 GEGELHGFAYEPRLATPVTALLDQLTLPFQSFSG 453
              ELHGFAYEPRLA P+T LL+QLTLPFQSF+ 
Sbjct: 401 ---ELHGFAYEPRLAVPITPLLEQLTLPFQSFTA 431

Source: Misopates orontium

Species: Misopates orontium

Genus: Misopates

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169647569|gb|ACA61781.1| DOUBLE TOP [Petunia x hybrida]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 294/468 (62%), Positives = 357/468 (76%), Gaps = 31/468 (6%)

Query: 1   MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLD 60
           MEAF+   ++  F Y F   + +    +  GT T N+      P+MDSR+WS+LP RL+D
Sbjct: 1   MEAFHHAPISFHFPYAFPIPTPT----NFLGTTTPNSSSINGSPYMDSRLWSRLPHRLVD 56

Query: 61  RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYI 120
           R++AFLPPPAFF+ARAVCKR+YGLL+S +FLELY+ VSP+ HWF+FF QK P        
Sbjct: 57  RIIAFLPPPAFFKARAVCKRFYGLLYSTNFLELYLQVSPKLHWFIFFKQKLP-------- 108

Query: 121 YTTNNNSIRSAAAATC---CEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDH 177
               NN  +++   T     EGYL DP+ L WY++SFAL+P  FSP SSSGGL+C+VSD 
Sbjct: 109 ---KNNIFKNSIGGTSNDRIEGYLLDPNNLCWYKLSFALIPQGFSPVSSSGGLICFVSDE 165

Query: 178 AGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSS 237
           AG+K ++LCNP+ GS+  LPPTLRPRLFPSIGL +T +++D+ VAGDDLISPYAVKNL++
Sbjct: 166 AGSKNILLCNPLVGSIIPLPPTLRPRLFPSIGLNITNSSIDLAVAGDDLISPYAVKNLTT 225

Query: 238 ESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFN 297
           ESFHID  GF+S+WGTTS+LPRLCS ESG+MV V G+FYCMN+SPFSVL YDI  N W  
Sbjct: 226 ESFHIDGNGFYSIWGTTSTLPRLCSFESGKMVHVEGRFYCMNFSPFSVLCYDIGTNNWSK 285

Query: 298 IQAPMRRFLRSPSLLDS-NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQ 356
           IQAPMRRFLRSPSL++S NGKL+LVAAVEKSKLNVP+SLRLWSLQ CGT+W EIERMPQQ
Sbjct: 286 IQAPMRRFLRSPSLVESNNGKLVLVAAVEKSKLNVPRSLRLWSLQECGTMWVEIERMPQQ 345

Query: 357 LYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANN---- 412
           LY QFAE+E G GF+ +GHGEF+VI+I+ SDKALLFD   K W WIP CP+V  NN    
Sbjct: 346 LYVQFAEVENGQGFNCVGHGEFVVILIKNSDKALLFDFVKKRWVWIPPCPFVVGNNHNID 405

Query: 413 --CGG-----NYGD-GEGELHGFAYEPRLATPVTALLDQLTLPFQSFS 452
             CG      NYG+ G GELHGF Y+PRLA P+ ALLDQLTLPFQSF+
Sbjct: 406 YSCGASSSINNYGEFGGGELHGFGYDPRLAAPIGALLDQLTLPFQSFN 453

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535821|ref|NP_001234215.1| DOUBLE TOP [Solanum lycopersicum] gi|169647571|gb|ACA61782.1| DOUBLE TOP [Solanum lycopersicum]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/463 (62%), Positives = 355/463 (76%), Gaps = 19/463 (4%)

Query: 1   MEAFNTLSMASPFSYTFTSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLD 60
           MEAF+   ++  F Y F   + +  +  G+  ++S N M     WMDSRIWS+LP RL+D
Sbjct: 1   MEAFHHPPISFHFPYAFPIPTPTT-NFLGTPNSSSVNGMIINT-WMDSRIWSRLPHRLID 58

Query: 61  RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYI 120
           R++AFLPPPAFFRAR VCKR+YGL++S  FLELY+ VSP+ +WF+FF QK P     + I
Sbjct: 59  RIIAFLPPPAFFRARVVCKRFYGLIYSTHFLELYLQVSPKRNWFIFFKQKVP----RNNI 114

Query: 121 YTTNNNSIRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGA 180
           Y    NS  S   +   EGYLFDP  L WYR+SFAL+P  FSP SSSGGL+C+VSD +G+
Sbjct: 115 YKNVMNSSNSGVCSV--EGYLFDPENLCWYRLSFALIPQGFSPVSSSGGLICFVSDESGS 172

Query: 181 KTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF 240
           K ++LCNP+ GS+  LPPTLRPRLFPSIGL +T T++D+ VAGDDLISPYAVKNL++ESF
Sbjct: 173 KNILLCNPLVGSIIPLPPTLRPRLFPSIGLTITNTSIDIAVAGDDLISPYAVKNLTTESF 232

Query: 241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQA 300
           HID  GF+S+WGTTS+LPRLCS ESG+MV V G+FYCMN+SPFSVL+YDI  N W  IQA
Sbjct: 233 HIDGNGFYSIWGTTSTLPRLCSFESGKMVHVQGRFYCMNFSPFSVLSYDIGTNNWCKIQA 292

Query: 301 PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQ 360
           PMRRFLRSPSL++ NGK++LVAAVEKSKLNVP+SLRLW+LQ CGT+W EIERMPQQLY Q
Sbjct: 293 PMRRFLRSPSLVEGNGKVVLVAAVEKSKLNVPRSLRLWALQDCGTMWLEIERMPQQLYVQ 352

Query: 361 FAEIEAGNGFDTIGHGEFIVIVIR-GSDKALLFDLCMKSWQWIPRCPYV----------Q 409
           FAE+E G GF  +GHGE++VI+I+  SDKALLFD C K W WIP CP++           
Sbjct: 353 FAEVENGQGFSCVGHGEYVVIMIKNNSDKALLFDFCKKRWIWIPPCPFLGNNLDYGGVGS 412

Query: 410 ANNCGGNYGDGEGELHGFAYEPRLATPVTALLDQLTLPFQSFS 452
           +NN  G +G G GELHGF Y+PRLA P+ ALLDQLTLPFQSF+
Sbjct: 413 SNNYCGEFGVGGGELHGFGYDPRLAAPIGALLDQLTLPFQSFN 455

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:2015766	442	UFO "AT1G30950" [Arabidopsis t	0.871	0.893	0.673	1.7e-146
TAIR|locus:2143256	448	AT5G15710 "AT5G15710" [Arabido	0.558	0.564	0.264	2.4e-26
TAIR|locus:2015974	467	LCR "AT1G27340" [Arabidopsis t	0.554	0.537	0.251	7.6e-21
TAIR|locus:2082797	411	HWS "HAWAIIAN SKIRT" [Arabidop	0.618	0.681	0.257	6.8e-19
TAIR|locus:2169253	403	AT5G43190 "AT5G43190" [Arabido	0.584	0.657	0.229	1.9e-15
TAIR|locus:2025247	374	AT1G76920 "AT1G76920" [Arabido	0.233	0.283	0.271	2.7e-09
TAIR|locus:2125889	457	AT4G33160 "AT4G33160" [Arabido	0.112	0.111	0.392	2.7e-06
TAIR|locus:2152064	392	AT5G65850 "AT5G65850" [Arabido	0.423	0.489	0.248	0.00047

TAIR|locus:2015766 UFO "AT1G30950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
 Identities = 274/407 (67%), Positives = 318/407 (78%)

Query:    45 WMDSRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSP-RHHW 103
             WMD RIWSKLP  LLDRV+AFLPPPAFFR R VCKR+Y LLFSN+FLE Y+ + P RH+ 
Sbjct:    41 WMDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNC 100

Query:   104 FLFFNQKTPLIKXXXXXXXXXXXXXRSAAAATCCEGYLFDPHELSWYRISFALVPSEFSP 163
             FLFF  KT  +K              + A     EG+LFDP+E+ WYR+SFA +PS F P
Sbjct:   101 FLFFKHKT--LKSYIYKRGGTNDDDSNKA-----EGFLFDPNEIRWYRLSFAYIPSGFYP 153

Query:   164 ASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAG 223
             + SSGGLV WVS+ AG KT++LCNP+ GS+SQLPP  RPRLFPSIGL VTPT++DVTVAG
Sbjct:   154 SGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAG 213

Query:   224 DDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPF 283
             DDLISPYAVKNLSSESFH+DAGGFFSLW  TSSLPRLCSLESG+MV V GKFYCMNYSPF
Sbjct:   214 DDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSPF 273

Query:   284 SVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQAC 343
             SVL+Y+++ N W  IQAPMRRFLRSPSLL+S G+LILVAAVEKSKLNVPKSLRLWSLQ  
Sbjct:   274 SVLSYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQD 333

Query:   344 GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIP 403
                W EIERMPQ LY QFA  E G GF+ +G+ EF++IV+RG+   LLFD+  KSW W+P
Sbjct:   334 NATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLWVP 393

Query:   404 RCPYVQANNCGGNYGDG-EGE-LHGFAYEPRLATPVTALLDQLTLPF 448
              CPY  + + GG+ G G +GE L GFAY+P L TPV +LLDQLTLPF
Sbjct:   394 PCPY--SGSGGGSSGGGSDGEVLQGFAYDPVLTTPVVSLLDQLTLPF 438

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0000151 "ubiquitin ligase complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=RCA

TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
 Identities = 71/268 (26%), Positives = 110/268 (41%)

Query:   148 SWYRISFALVPS-EFSPASSSGGLVCWVS-DHAGAKTLILCNPVTGSLSQLPPTLRPRLF 205
             +WY+I F  +P   F    SSGGLVC+   D    +TL+ CNP+  S   LP     +  
Sbjct:   179 TWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLV-CNPLMQSWRTLPSMHYNQQR 237

Query:   206 PSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLES 265
               I +          +A  D+   Y  K+L +E +          W     +P + +L S
Sbjct:   238 QLIMVVDRSDKSFKVIATSDI---YGDKSLPTEVYDSKT----DKWSLHQIMPAV-NLCS 289

Query:   266 GRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGK-LILVAAV 324
              +M   + + Y    SP  ++ Y + +  W +I A   R L    L+    K L LV  +
Sbjct:   290 SKMAYCDSRLYLETLSPLGLMMYRLDSGQWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRI 349

Query:   325 EKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR 384
                  +  +S+R+W L      W EI RMP + +     + A   F+  G    I     
Sbjct:   350 --GLYSTLQSMRIWELDHTKVSWVEISRMPPKYFRALLRLSAER-FECFGQDNLICFTSW 406

Query:   385 GSDKALLFDLCMKSWQWIPRCPYVQANN 412
                K LL+++  K W WI  C     N+
Sbjct:   407 NQGKGLLYNVDKKIWSWISGCALQSCNS 434

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015974 LCR "AT1G27340" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
 Identities = 70/278 (25%), Positives = 123/278 (44%)

Query:   139 GYLFDPHELSWYRISFALVPSE--FSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQL 196
             G ++DP    W+      +P +    P +S+GGLVC++    G +   + NP+T S  +L
Sbjct:   181 GQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLD--IGHRNFYVSNPLTKSFREL 238

Query:   197 PPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLW---GT 253
             P     R F  +  +V   AV +T+ G+     Y V  +  E  +       ++W   GT
Sbjct:   239 PA----RSF-KVWSRV---AVGMTLNGNSTSHGYKVLWVGCEGEYEVYDSLSNVWTKRGT 290

Query:   254 TSS---LPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPS 310
               S   LP L + +S + V ++   Y M   P  +L+YD+ +  W     P    L   +
Sbjct:   291 IPSNIKLPVLLNFKS-QPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIPGPPDLSDHT 349

Query:   311 LLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGF 370
             L     +L+LV  + K   N    + +W LQ    LW E++RMP     +F         
Sbjct:   350 LAACGERLMLVGLLTK---NAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHIR--M 404

Query:   371 DTIGH-GEFIVIVIRGS--DKALLFDLCMKSWQWIPRC 405
             + +G+ G  I++ +R    ++ + ++   + W  +P C
Sbjct:   405 NCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVPGC 442

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010928 "regulation of auxin mediated signaling pathway" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
 Identities = 82/318 (25%), Positives = 130/318 (40%)

Query:   139 GYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQL-- 196
             GY +DP    WY      + +     +SS GLVC++ +    K + + NP+T     L  
Sbjct:   105 GYAYDPIIRKWYSFDLPCIETSNWFVASSCGLVCFMDNDCRNK-IYVSNPITKQWRTLIE 163

Query:   197 PPTLRPRLFPSIGLKVTPTAVDVTVAGDDL-ISPYAVKNLSSESFHIDAG-GFFS----L 250
             PP  +   + ++   V      V  A     +S    K +    F  D     +S     
Sbjct:   164 PPGHKSTDYTAMSTSVNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLSIHLYSSETMT 223

Query:   251 WGTTSSLPRLCSLESGR-MVQVNGKFYCMNYSPF-SVLAYDISANAWFNIQAP-----MR 303
             W TT     L     G   V  N   Y M YS   S   + + A+   +I +P     MR
Sbjct:   224 W-TTLVNDVLSGWRGGNESVICNNVLYFMIYSTGGSDHRHGLIASNLSSIGSPSSGILMR 282

Query:   304 RFLRSPS------LLDSNGKLILVAAVEK-SKLNVPKSLRLWSLQACGTLWAEIERMPQQ 356
              F+  P       L++   +L++V  + K  +  V K + +W L+  G  W E+ +MPQ+
Sbjct:   283 SFIPMPCSLTCGRLMNLRERLVIVGGIGKHDRPEVIKGIGIWVLK--GKEWVEMAKMPQR 340

Query:   357 LYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGN 416
              +  F E +    F + G  + + I   GS   L FD+ +K W+W  +CP  +       
Sbjct:   341 FFQGFGEFD--EVFASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPL--- 395

Query:   417 YGDGEGELH-GFAYEPRL 433
                   +L  GF +EPRL
Sbjct:   396 ------QLFTGFCFEPRL 407

GO:0005634 "nucleus" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0048513 "organ development" evidence=IMP

GO:0006869 "lipid transport" evidence=RCA

TAIR|locus:2169253 AT5G43190 "AT5G43190" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 66/287 (22%), Positives = 117/287 (40%)

Query:   141 LFDPHELSWYRI----SFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQL 196
             LF+P+ +SW  +    S +L  +  S  SSS GL+C+    +   +L + NP+T S   +
Sbjct:   112 LFNPNLISWCTLPLPRSLSLTCAS-SLLSSSNGLLCFSLSPSSVSSLSIFNPLTRSSRSI 170

Query:   197 PPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAG--GFFSLWGTT 254
                  P  F  + L  +P    +      L S  +  +  S   + D+G   +    G  
Sbjct:   171 KLPCYPFPFELLSLVTSPKGYKIFT----LCSSSSAASSRSVCLY-DSGDRSWRKFGGVD 225

Query:   255 SSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQA----PMRRFLRSPS 310
               LPR  + + G  V  NG  Y     PF +++ D++   W         P    +    
Sbjct:   226 QVLPRGFN-QDG--VFYNGSLYFARSEPFLIVSVDLNDGKWTTATGDGVFPADDEITFAR 282

Query:   311 LLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGF 370
             L+    K IL          + +S+++W  +     W E+E +P  +  +F  +   N  
Sbjct:   283 LVSDPEKKILYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCRKFTSVCYHNYE 342

Query:   371 DT--IGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQAN-NCG 414
                 + H E I +      + L F +  ++W W+P+CP +    +CG
Sbjct:   343 HVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCG 389

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006865 "amino acid transport" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2025247 AT1G76920 "AT1G76920" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
 Identities = 31/114 (27%), Positives = 51/114 (44%)

Query:   306 LRSPSLLDSNG--KLILVAAVEKS-KLNVPKS-LRLWSLQACGTLWAEIERMPQQLYAQF 361
             ++ P LL  NG  KL+++  ++ +  LN   S + +  L      W E  RMP ++Y  F
Sbjct:   254 IKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLESLEWEEAGRMPLEMYRGF 313

Query:   362 AEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGG 415
              E    + F   G G+ +    +   K  ++D C + W+WI   P      C G
Sbjct:   314 QE---SSKFKVFGGGDRVYFSAKRMGKLAMWD-CWQGWRWIEGVPGYADGLCRG 363

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006869 "lipid transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2125889 AT4G33160 "AT4G33160" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query:    58 LLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFN 108
             +L+RVL++LP   FFR  +VCKRW     S SF      +  R  WF   +
Sbjct:    74 VLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMID 124

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2152064 AT5G65850 "AT5G65850" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00047, Sum P(2) = 0.00047
 Identities = 56/225 (24%), Positives = 92/225 (40%)

Query:   136 CC--EGYLF---DPHELSWYRISFALVPSEFSP----ASSSGGLVCWVSDHAGAKTLILC 186
             CC  +G LF    P   + Y  S A+    FS     +    GL+C+          ++C
Sbjct:    88 CCKKDGNLFFFSSPQLQNPYENSSAISLKNFSLCYKISRPVNGLICFKRKEMNETVTVIC 147

Query:   187 NPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAG- 245
             NP TG    LP  ++  + PS      P      V    L+S Y     S E   +  G 
Sbjct:   148 NPSTGHTLSLPKPMKTSIGPSRFFVYEPIQKQFKV----LLS-YK----SDEHQVLTLGT 198

Query:   246 GFFSLWGTTS-SLPRLCSLESGRMVQVNGKFY--CMNYSP--FSVLAYDISANAWFNIQA 300
             G  S W     S+P +  +     + +NG  Y   +N S   + ++ +D+ +   F    
Sbjct:   199 GELS-WRIIECSMPHILGMSE---ICINGVLYYPAINLSSGDYIIVCFDVRSEK-FRFIT 253

Query:   301 PMRRFLRSP---SLLDSNGKLILVAAVEKSKLNV-PKSLRLWSLQ 341
              M  F+++    +L++ NGKL  + +     ++   KS+ LW LQ
Sbjct:   254 VMEEFIKAAHDGTLINYNGKLASLVSERYCFVDGRSKSIELWVLQ 298

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39090	UFO_ARATH	No assigned EC number	0.6716	0.8763	0.8981	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	453
pfam12937	47	pfam12937, F-box-like, F-box-like	8e-06
pfam00646	48	pfam00646, F-box, F-box domain	1e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	1e-04

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 51 WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSF 90
           S LP  +L ++ ++L P    R   VC+RW  L   +S 
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 50 IWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIH 96
              LP  LL  +L+ L P    R   V KRW  L+ S    +  + 
Sbjct: 2  SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 54 LPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSF 90
          LP  +L+ +L+ L P    R R V ++W  L+ S+ F
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
PHA02713	557	hypothetical protein; Provisional	99.91
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.9
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.81
PHA03098	534	kelch-like protein; Provisional	99.8
PHA02790	480	Kelch-like protein; Provisional	99.79
PHA02713	557	hypothetical protein; Provisional	99.79
PLN02153	341	epithiospecifier protein	99.78
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.76
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.76
PHA02790	480	Kelch-like protein; Provisional	99.75
PLN02193	470	nitrile-specifier protein	99.75
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.73
PLN02153	341	epithiospecifier protein	99.7
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.7
PHA03098	534	kelch-like protein; Provisional	99.69
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.64
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.63
PLN02193	470	nitrile-specifier protein	99.62
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.62
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.07
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.0
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.95
KOG1230	521	consensus Protein containing repeated kelch motifs	98.83
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.81
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	98.77
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	98.64
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.62
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.5
KOG1230	521	consensus Protein containing repeated kelch motifs	98.44
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	98.41
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	98.3
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.1
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.87
PF13964	50	Kelch_6: Kelch motif	97.8
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	97.59
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.53
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.32
PF13964	50	Kelch_6: Kelch motif	97.28
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	96.99
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	96.48
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	96.19
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.84
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.54
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	95.43
smart00612	47	Kelch Kelch domain.	95.37
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.33
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.32
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	95.24
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.19
smart00612	47	Kelch Kelch domain.	95.17
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.79
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	94.79
PF13415	49	Kelch_3: Galactose oxidase, central domain	94.62
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	94.58
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.24
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	94.19
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	94.05
PF13415	49	Kelch_3: Galactose oxidase, central domain	93.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.63
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	93.16
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	92.91
smart00284	255	OLF Olfactomedin-like domains.	92.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.12
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	90.65
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.3
PLN02772	398	guanylate kinase	87.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.73
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	86.62
PRK11028	330	6-phosphogluconolactonase; Provisional	86.03
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	84.24
KOG2055	514	consensus WD40 repeat protein [General function pr	84.09
PF13854	42	Kelch_5: Kelch motif	82.85
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	82.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	82.56
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	81.52
PLN02772	398	guanylate kinase	81.26
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	81.05
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.09

>PHA02713 hypothetical protein; Provisional

Probab=99.91  E-value=1.8e-22  Score=208.07  Aligned_cols=239  Identities=14%  Similarity=0.178  Sum_probs=178.6

Q ss_pred             ceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCC----CCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcC
Q 045071          139 GYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA----GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTP  214 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~----~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~  214 (453)
                      ...|||.+++|..++....++....++..+|.|++.|+..    ....+++|||.+++|..+|+|+.+|..+.++.. + 
T Consensus       274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~-  351 (557)
T PHA02713        274 ILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-D-  351 (557)
T ss_pred             EEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-C-
Confidence            3579999999999873333444455677788888887742    134688999999999999999988876544333 2 


Q ss_pred             CceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC------------
Q 045071          215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP------------  282 (453)
Q Consensus       215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~------------  282 (453)
                        .|||++||.....   ...++|+||+.+    ++|..+++||...  ....++.++|+||++++..            
T Consensus       352 --g~IYviGG~~~~~---~~~sve~Ydp~~----~~W~~~~~mp~~r--~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~  420 (557)
T PHA02713        352 --DTIYAIGGQNGTN---VERTIECYTMGD----DKWKMLPDMPIAL--SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN  420 (557)
T ss_pred             --CEEEEECCcCCCC---CCceEEEEECCC----CeEEECCCCCccc--ccccEEEECCEEEEEeCCCcccccccccccc
Confidence              3999999853221   235689999999    9999999998632  3345788999999997631            


Q ss_pred             -----------CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCC-CCeEEE
Q 045071          283 -----------FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACG-TLWAEI  350 (453)
Q Consensus       283 -----------~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~-~~W~~v  350 (453)
                                 ..+.+||+.+++|+.+ .|++..+..+.+++.+|+||++||.....   ...-.+..||+++ ++|+.+
T Consensus       421 ~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~---~~~~~ve~Ydp~~~~~W~~~  496 (557)
T PHA02713        421 SIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEK---NVKTCIFRYNTNTYNGWELI  496 (557)
T ss_pred             cccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCC---ccceeEEEecCCCCCCeeEc
Confidence                       3589999999999887 56665556667889999999999864321   0011467889988 799999


Q ss_pred             eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC--CeEEEEECCCCceEEcCC
Q 045071          351 ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS--DKALLFDLCMKSWQWIPR  404 (453)
Q Consensus       351 ~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~--~~v~~Yd~~~~~W~~l~~  404 (453)
                      ..||...          ....++..+|.||+.++..  ..+.+||+.+++|..+..
T Consensus       497 ~~m~~~r----------~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        497 TTTESRL----------SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             cccCccc----------ccceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence            9998733          2345566799999986532  368999999999997754

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.90  E-value=7e-22  Score=202.92  Aligned_cols=239  Identities=16%  Similarity=0.178  Sum_probs=189.4

Q ss_pred             cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCC-C---CeeEEEEcCcccceecCCCCCCCCCcceEEEEEc
Q 045071          138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA-G---AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVT  213 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~-~---~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~  213 (453)
                      ....|||..+.|..+....-++....+++.+|.||+.|+.. +   .+.+.+|||.+++|..+|+|..+|....++... 
T Consensus       302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~-  380 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD-  380 (571)
T ss_pred             eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC-
Confidence            45689999999999884445665667889999999998765 2   357899999999999999999988876555543 


Q ss_pred             CCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC------CCEEEE
Q 045071          214 PTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS------PFSVLA  287 (453)
Q Consensus       214 ~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~  287 (453)
                         .+||++||.....   ...++|.||+.+    +.|..+++|+.  .......++++|+||.+++.      ...+.+
T Consensus       381 ---g~iYavGG~dg~~---~l~svE~YDp~~----~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~  448 (571)
T KOG4441|consen  381 ---GKLYAVGGFDGEK---SLNSVECYDPVT----NKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVEC  448 (571)
T ss_pred             ---CEEEEEecccccc---ccccEEEecCCC----CcccccCCCCc--ceeeeEEEEECCEEEEEcCcCCCccccceEEE
Confidence               4999999864322   356899999999    99999999876  23335578899999999762      257999


Q ss_pred             EECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCC
Q 045071          288 YDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAG  367 (453)
Q Consensus       288 yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~  367 (453)
                      ||+.+++|+.+ .||+..+....++..+|+||+|||.....  ...  .|..+|+.+++|+.+..|...          +
T Consensus       449 YDP~t~~W~~~-~~M~~~R~~~g~a~~~~~iYvvGG~~~~~--~~~--~VE~ydp~~~~W~~v~~m~~~----------r  513 (571)
T KOG4441|consen  449 YDPETNTWTLI-APMNTRRSGFGVAVLNGKIYVVGGFDGTS--ALS--SVERYDPETNQWTMVAPMTSP----------R  513 (571)
T ss_pred             EcCCCCceeec-CCcccccccceEEEECCEEEEECCccCCC--ccc--eEEEEcCCCCceeEcccCccc----------c
Confidence            99999999887 67776666677889999999999976521  122  477789999999999888752          2


Q ss_pred             CcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcCC
Q 045071          368 NGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIPR  404 (453)
Q Consensus       368 ~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~~  404 (453)
                      ....++..++.||+.++.     ...+..||+.+++|+..+.
T Consensus       514 s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  514 SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            345567789999998653     5689999999999999987

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.89  E-value=5.8e-21  Score=176.07  Aligned_cols=214  Identities=20%  Similarity=0.343  Sum_probs=146.3

Q ss_pred             eeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCC---cceEEEEEcC--CceEEEEEccCCCCccccccccee
Q 045071          164 ASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRL---FPSIGLKVTP--TAVDVTVAGDDLISPYAVKNLSSE  238 (453)
Q Consensus       164 ~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~---~~~~~~~~~~--~~ykvv~~g~~~~~~~~~~~~~~e  238 (453)
                      +++|+||||+...    ..++||||.|++|+.||+++.++.   ....++++++  +.|||+.+.......   ....++
T Consensus         1 ~~sCnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~~   73 (230)
T TIGR01640         1 VVPCDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEHQ   73 (230)
T ss_pred             CcccceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccEE
Confidence            3689999988653    479999999999999997654311   1135777775  579999986532111   235679


Q ss_pred             EEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC----C-EEEEEECCCCcEEE-eecCCccc--cCCCc
Q 045071          239 SFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP----F-SVLAYDISANAWFN-IQAPMRRF--LRSPS  310 (453)
Q Consensus       239 vyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~----~-~i~~yD~~~~~W~~-i~~p~~~~--~~~~~  310 (453)
                      +|++.+    ++|+.+...+...... ..+++++|.+||+....    . .|++||+.+++|++ ++.|....  .....
T Consensus        74 Vys~~~----~~Wr~~~~~~~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        74 VYTLGS----NSWRTIECSPPHHPLK-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             EEEeCC----CCccccccCCCCcccc-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence            999999    9999987433221112 23899999999997532    2 79999999999995 76654321  12346


Q ss_pred             eeeeCCeEEEEEEEeccCCCCCCcEEEEEeecC-CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CC
Q 045071          311 LLDSNGKLILVAAVEKSKLNVPKSLRLWSLQAC-GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SD  387 (453)
Q Consensus       311 lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~-~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~  387 (453)
                      |++++|+|+++.....     ...++||.|++. ..+|++.-+++.....++...   ....++.+++.|++....  ..
T Consensus       149 L~~~~G~L~~v~~~~~-----~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~---~~~~~~~~~g~I~~~~~~~~~~  220 (230)
T TIGR01640       149 LINYKGKLAVLKQKKD-----TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD---NFLSGFTDKGEIVLCCEDENPF  220 (230)
T ss_pred             EEEECCEEEEEEecCC-----CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhh---eeEeEEeeCCEEEEEeCCCCce
Confidence            8899999999886432     135899999854 567999877763222222211   123456677888887654  23


Q ss_pred             eEEEEECCCC
Q 045071          388 KALLFDLCMK  397 (453)
Q Consensus       388 ~v~~Yd~~~~  397 (453)
                      .++.||++++
T Consensus       221 ~~~~y~~~~~  230 (230)
T TIGR01640       221 YIFYYNVGEN  230 (230)
T ss_pred             EEEEEeccCC
Confidence            3999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.81  E-value=2.3e-18  Score=177.11  Aligned_cols=219  Identities=18%  Similarity=0.204  Sum_probs=166.5

Q ss_pred             ecCceEEEEecCCC----CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEE
Q 045071          166 SSGGLVCWVSDHAG----AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFH  241 (453)
Q Consensus       166 s~~Gll~~~~~~~~----~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyd  241 (453)
                      +..+.|++.|+...    ...+..+||.+++|..+.+|+.+|....+++.-+    +||++||...  ......++++||
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~----~lYv~GG~~~--~~~~l~~ve~YD  355 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG----KLYVVGGYDS--GSDRLSSVERYD  355 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC----EEEEEccccC--CCcccceEEEec
Confidence            55666776665442    3467789999999999999998888655544433    9999998652  111457889999


Q ss_pred             cccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC-----CEEEEEECCCCcEEEeecCCccccCCCceeeeCC
Q 045071          242 IDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP-----FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNG  316 (453)
Q Consensus       242 s~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g  316 (453)
                      +.+    ++|..+++|...  ......+.++|.||.+++..     ..+..||+.+++|+.+ .|++..+..+..++.+|
T Consensus       356 ~~~----~~W~~~a~M~~~--R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g  428 (571)
T KOG4441|consen  356 PRT----NQWTPVAPMNTK--RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGG  428 (571)
T ss_pred             CCC----CceeccCCccCc--cccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECC
Confidence            999    999999999763  33355788999999998642     4799999999999887 66666556677889999


Q ss_pred             eEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEE
Q 045071          317 KLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALL  391 (453)
Q Consensus       317 ~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~  391 (453)
                      +||++||...... ...  .+-.||+.++.|+.+..|+..          +..+.++..++.||+.++.     ...+.+
T Consensus       429 ~iYi~GG~~~~~~-~l~--sve~YDP~t~~W~~~~~M~~~----------R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~  495 (571)
T KOG4441|consen  429 KLYIIGGGDGSSN-CLN--SVECYDPETNTWTLIAPMNTR----------RSGFGVAVLNGKIYVVGGFDGTSALSSVER  495 (571)
T ss_pred             EEEEEcCcCCCcc-ccc--eEEEEcCCCCceeecCCcccc----------cccceEEEECCEEEEECCccCCCccceEEE
Confidence            9999999654320 112  456678999999999999873          2345567789999998653     346899


Q ss_pred             EECCCCceEEcCCCCCcCC
Q 045071          392 FDLCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       392 Yd~~~~~W~~l~~~p~~~~  410 (453)
                      ||+.+++|..++.++..+.
T Consensus       496 ydp~~~~W~~v~~m~~~rs  514 (571)
T KOG4441|consen  496 YDPETNQWTMVAPMTSPRS  514 (571)
T ss_pred             EcCCCCceeEcccCccccc
Confidence            9999999999987775544

>PHA03098 kelch-like protein; Provisional

Probab=99.80  E-value=6.7e-18  Score=175.10  Aligned_cols=241  Identities=14%  Similarity=0.128  Sum_probs=168.2

Q ss_pred             eeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCC----CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCc
Q 045071          141 LFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAG----AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTA  216 (453)
Q Consensus       141 ~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~----~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~  216 (453)
                      .|++..++|..++.... .....++..++.+++.|+...    ...++++||.+++|..+|+|+.+|..+.++.. +   
T Consensus       268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~---  342 (534)
T PHA03098        268 TNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-N---  342 (534)
T ss_pred             ecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-C---
Confidence            46666777777642211 122245556677777665422    23689999999999999999988876544332 2   


Q ss_pred             eEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC------CCEEEEEEC
Q 045071          217 VDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS------PFSVLAYDI  290 (453)
Q Consensus       217 ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~yD~  290 (453)
                      .+||++||.....   ....+++||+.+    ++|+..+++|..  .....++.++|++|++++.      ...+..||+
T Consensus       343 ~~lyv~GG~~~~~---~~~~v~~yd~~~----~~W~~~~~lp~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~  413 (534)
T PHA03098        343 NRIYVIGGIYNSI---SLNTVESWKPGE----SKWREEPPLIFP--RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSL  413 (534)
T ss_pred             CEEEEEeCCCCCE---ecceEEEEcCCC----CceeeCCCcCcC--CccceEEEECCEEEEECCcCCCCcccceEEEEeC
Confidence            3899999864211   245679999999    999999888753  2335568899999999763      146899999


Q ss_pred             CCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcE
Q 045071          291 SANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGF  370 (453)
Q Consensus       291 ~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~  370 (453)
                      .+++|+.+ .|+|..+.....+..+|+||++||...... ....-.+|.+|+.+++|+++..||...          ...
T Consensus       414 ~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r----------~~~  481 (534)
T PHA03098        414 NTNKWSKG-SPLPISHYGGCAIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTELSSLNFPR----------INA  481 (534)
T ss_pred             CCCeeeec-CCCCccccCceEEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeCCCCCccc----------ccc
Confidence            99999987 355554455567788999999998643210 000114889999999999998876421          112


Q ss_pred             EEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcCCCCC
Q 045071          371 DTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIPRCPY  407 (453)
Q Consensus       371 ~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~~~p~  407 (453)
                      ..+..++.||+.++.     ...+.+||+++++|..++..|-
T Consensus       482 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        482 SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             eEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            233458899987653     3579999999999999987663

>PHA02790 Kelch-like protein; Provisional

Probab=99.79  E-value=1.4e-17  Score=169.47  Aligned_cols=200  Identities=15%  Similarity=0.147  Sum_probs=148.5

Q ss_pred             eeecCceEEEEecCCC---CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEE
Q 045071          164 ASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF  240 (453)
Q Consensus       164 ~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evy  240 (453)
                      ++..++.|++.|+...   ...++.|||.+++|..+|+|+.+|....++ ..+   .+||++||...      ..+++.|
T Consensus       267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~---~~iYviGG~~~------~~sve~y  336 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PAN---NKLYVVGGLPN------PTSVERW  336 (480)
T ss_pred             eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EEC---CEEEEECCcCC------CCceEEE
Confidence            3446778887776422   246788999999999999999888664432 333   38999998531      2457999


Q ss_pred             EcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC---CEEEEEECCCCcEEEeecCCccccCCCceeeeCCe
Q 045071          241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP---FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGK  317 (453)
Q Consensus       241 ds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~---~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~  317 (453)
                      ++.+    ++|..+++||..+  ....++.++|+||++++..   ..+.+||+.+++|+.+ .|++..+..+.+++.+|+
T Consensus       337 dp~~----n~W~~~~~l~~~r--~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~~~~~~  409 (480)
T PHA02790        337 FHGD----AAWVNMPSLLKPR--CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCALVFGRR  409 (480)
T ss_pred             ECCC----CeEEECCCCCCCC--cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccceEEEECCE
Confidence            9998    9999999998632  2345788999999997642   4688999999999887 445544445567789999


Q ss_pred             EEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEE
Q 045071          318 LILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLF  392 (453)
Q Consensus       318 L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Y  392 (453)
                      ||++|+.          .++  +|+.+++|+.+..|+...          ....++..+|.||+.++.     ...+.+|
T Consensus       410 IYv~GG~----------~e~--ydp~~~~W~~~~~m~~~r----------~~~~~~v~~~~IYviGG~~~~~~~~~ve~Y  467 (480)
T PHA02790        410 LFLVGRN----------AEF--YCESSNTWTLIDDPIYPR----------DNPELIIVDNKLLLIGGFYRGSYIDTIEVY  467 (480)
T ss_pred             EEEECCc----------eEE--ecCCCCcEeEcCCCCCCc----------cccEEEEECCEEEEECCcCCCcccceEEEE
Confidence            9999952          133  567789999999987521          233456679999998752     2578999


Q ss_pred             ECCCCceEEc
Q 045071          393 DLCMKSWQWI  402 (453)
Q Consensus       393 d~~~~~W~~l  402 (453)
                      |+++++|+..
T Consensus       468 d~~~~~W~~~  477 (480)
T PHA02790        468 NNRTYSWNIW  477 (480)
T ss_pred             ECCCCeEEec
Confidence            9999999754

>PHA02713 hypothetical protein; Provisional

Probab=99.79  E-value=8.1e-18  Score=173.64  Aligned_cols=206  Identities=10%  Similarity=0.125  Sum_probs=151.6

Q ss_pred             eEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcc
Q 045071          182 TLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLC  261 (453)
Q Consensus       182 ~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~  261 (453)
                      .+..|||.+++|..+++|+.++....+++ .+   .+||++||.....  .....++.||+.+    +.|..+++|+..+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~---~~IYviGG~~~~~--~~~~~v~~Yd~~~----n~W~~~~~m~~~R  342 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VD---NEIIIAGGYNFNN--PSLNKVYKINIEN----KIHVELPPMIKNR  342 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-EC---CEEEEEcCCCCCC--CccceEEEEECCC----CeEeeCCCCcchh
Confidence            57889999999999999998776544333 23   3899999852111  1235679999999    9999999998633


Q ss_pred             cCCCCCeEEECCEEEEEecCC-----CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccC-C---C--
Q 045071          262 SLESGRMVQVNGKFYCMNYSP-----FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSK-L---N--  330 (453)
Q Consensus       262 ~~~~~~~v~~~G~lY~~~~~~-----~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~-~---~--  330 (453)
                        ....++.++|+||++++..     ..+.+||+.+++|+.+ .|+|.......+++++|+||++||..... .   .  
T Consensus       343 --~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        343 --CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             --hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEECCEEEEEeCCCccccccccccc
Confidence              2345788999999998642     4689999999999987 46666666667888999999999864210 0   0  


Q ss_pred             --------CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC------CeEEEEECCC
Q 045071          331 --------VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS------DKALLFDLCM  396 (453)
Q Consensus       331 --------~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~------~~v~~Yd~~~  396 (453)
                              ....-.++.||+.+++|+++..|+...          ....++..+|.||+.++..      ..+.+||+++
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r----------~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT----------IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecCCCCccc----------ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence                    000125788899999999999997632          1223456789999987531      3468999999


Q ss_pred             -CceEEcCCCCCcCC
Q 045071          397 -KSWQWIPRCPYVQA  410 (453)
Q Consensus       397 -~~W~~l~~~p~~~~  410 (453)
                       ++|+.++.+|..+.
T Consensus       490 ~~~W~~~~~m~~~r~  504 (557)
T PHA02713        490 YNGWELITTTESRLS  504 (557)
T ss_pred             CCCeeEccccCcccc
Confidence             89999999987655

>PLN02153 epithiospecifier protein

Probab=99.78  E-value=8.1e-17  Score=157.36  Aligned_cols=239  Identities=17%  Similarity=0.212  Sum_probs=158.1

Q ss_pred             CCCCeEeccC----CCCCCCCeeeeecCceEEEEecCCC-----CeeEEEEcCcccceecCCCCC-CCCCc-ceEEEEEc
Q 045071          145 HELSWYRISF----ALVPSEFSPASSSGGLVCWVSDHAG-----AKTLILCNPVTGSLSQLPPTL-RPRLF-PSIGLKVT  213 (453)
Q Consensus       145 ~~~~w~~l~l----~~lp~~~~~~~s~~Gll~~~~~~~~-----~~~~~v~NP~T~~w~~LP~~~-~~r~~-~~~~~~~~  213 (453)
                      ....|.++..    ...|+..+.+++.++.|++.++...     .+.++++|+.+++|..++++. .++.. ...+++..
T Consensus         5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~   84 (341)
T PLN02153          5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV   84 (341)
T ss_pred             cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence            4566887764    2245555556667888888776421     246899999999999998774 34421 11222221


Q ss_pred             CCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCC-----CCcccCCCCCeEEECCEEEEEecCC------
Q 045071          214 PTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSL-----PRLCSLESGRMVQVNGKFYCMNYSP------  282 (453)
Q Consensus       214 ~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~-----p~~~~~~~~~~v~~~G~lY~~~~~~------  282 (453)
                        .-+||++|+.....   ....+++||+.+    ++|+.++.|     |.  ....+.+++++++||++++..      
T Consensus        85 --~~~iyv~GG~~~~~---~~~~v~~yd~~t----~~W~~~~~~~~~~~p~--~R~~~~~~~~~~~iyv~GG~~~~~~~~  153 (341)
T PLN02153         85 --GTKLYIFGGRDEKR---EFSDFYSYDTVK----NEWTFLTKLDEEGGPE--ARTFHSMASDENHVYVFGGVSKGGLMK  153 (341)
T ss_pred             --CCEEEEECCCCCCC---ccCcEEEEECCC----CEEEEeccCCCCCCCC--CceeeEEEEECCEEEEECCccCCCccC
Confidence              13899999853221   234679999999    999988766     32  222345678899999996531      


Q ss_pred             -----CEEEEEECCCCcEEEeecCC--ccccCCCceeeeCCeEEEEEEEeccCC----CCCCcEEEEEeecCCCCeEEEe
Q 045071          283 -----FSVLAYDISANAWFNIQAPM--RRFLRSPSLLDSNGKLILVAAVEKSKL----NVPKSLRLWSLQACGTLWAEIE  351 (453)
Q Consensus       283 -----~~i~~yD~~~~~W~~i~~p~--~~~~~~~~lv~~~g~L~vv~~~~~~~~----~~~~~i~vw~ld~~~~~W~~v~  351 (453)
                           ..+.+||+++++|+.++.+.  +..+..+.++..+|+||++++......    .....-.++.||..+++|+++.
T Consensus       154 ~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~  233 (341)
T PLN02153        154 TPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVE  233 (341)
T ss_pred             CCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecc
Confidence                 35899999999999875321  123344467789999999988542100    0001125788888899999986


Q ss_pred             ec---CHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--------------CCeEEEEECCCCceEEcCC
Q 045071          352 RM---PQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--------------SDKALLFDLCMKSWQWIPR  404 (453)
Q Consensus       352 ~m---p~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--------------~~~v~~Yd~~~~~W~~l~~  404 (453)
                      .+   |.          .+....++..++.||+.+..              .+.+.+||+++++|+.+..
T Consensus       234 ~~g~~P~----------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~  293 (341)
T PLN02153        234 TTGAKPS----------ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE  293 (341)
T ss_pred             ccCCCCC----------CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence            53   33          11234456678999998653              1378999999999999863

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.76  E-value=2.7e-16  Score=154.11  Aligned_cols=232  Identities=14%  Similarity=0.119  Sum_probs=153.0

Q ss_pred             eeeeecCceEEEEecCCCCeeEEEEcC--cccceecCCCCC-CCCCcceEEEEEcCCceEEEEEccCCCCc---cccccc
Q 045071          162 SPASSSGGLVCWVSDHAGAKTLILCNP--VTGSLSQLPPTL-RPRLFPSIGLKVTPTAVDVTVAGDDLISP---YAVKNL  235 (453)
Q Consensus       162 ~~~~s~~Gll~~~~~~~~~~~~~v~NP--~T~~w~~LP~~~-~~r~~~~~~~~~~~~~ykvv~~g~~~~~~---~~~~~~  235 (453)
                      ...++.++.|++.++.. ...++++|+  .+++|..+|+|+ .+|..+.++. .+   .+||++|+.....   ......
T Consensus        11 ~~~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~~---~~iYv~GG~~~~~~~~~~~~~~   85 (346)
T TIGR03547        11 GTGAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-ID---GKLYVFGGIGKANSEGSPQVFD   85 (346)
T ss_pred             ceEEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEE-EC---CEEEEEeCCCCCCCCCcceecc
Confidence            34556788888877653 346788885  688999999998 4676544332 33   3899999853211   001235


Q ss_pred             ceeEEEcccCCCCCcccccC-CCCCcccCCCCCeE-EECCEEEEEecCC-------------------------------
Q 045071          236 SSESFHIDAGGFFSLWGTTS-SLPRLCSLESGRMV-QVNGKFYCMNYSP-------------------------------  282 (453)
Q Consensus       236 ~~evyds~~~~~~~~W~~~~-~~p~~~~~~~~~~v-~~~G~lY~~~~~~-------------------------------  282 (453)
                      .+++||+.+    ++|+.++ .+|+  ......++ .++|+||++++..                               
T Consensus        86 ~v~~Yd~~~----~~W~~~~~~~p~--~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T TIGR03547        86 DVYRYDPKK----NSWQKLDTRSPV--GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ  159 (346)
T ss_pred             cEEEEECCC----CEEecCCCCCCC--cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence            689999999    9999986 3443  22212233 6899999997531                               


Q ss_pred             --------CEEEEEECCCCcEEEeecCCcc-ccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeec
Q 045071          283 --------FSVLAYDISANAWFNIQAPMRR-FLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERM  353 (453)
Q Consensus       283 --------~~i~~yD~~~~~W~~i~~p~~~-~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~m  353 (453)
                              ..+.+||+.+++|+.+ .|+|. ......++..+|+||++|+...... ....+.++.++++.++|+++..|
T Consensus       160 ~~~~~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~y~~~~~~~~W~~~~~m  237 (346)
T TIGR03547       160 PPEDYFWNKNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKGNKLLLINGEIKPGL-RTAEVKQYLFTGGKLEWNKLPPL  237 (346)
T ss_pred             ChhHcCccceEEEEECCCCceeEC-ccCCCCcCCCceEEEECCEEEEEeeeeCCCc-cchheEEEEecCCCceeeecCCC
Confidence                    4689999999999987 34543 2344567789999999999753221 11233445555667899999999


Q ss_pred             CHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC----------------------CeEEEEECCCCceEEcCCCCCcC
Q 045071          354 PQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS----------------------DKALLFDLCMKSWQWIPRCPYVQ  409 (453)
Q Consensus       354 p~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~----------------------~~v~~Yd~~~~~W~~l~~~p~~~  409 (453)
                      |..... .  ..+.....++..++.||+.+...                      ..+.+||+++++|+.++.+|..+
T Consensus       238 ~~~r~~-~--~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~  312 (346)
T TIGR03547       238 PPPKSS-S--QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL  312 (346)
T ss_pred             CCCCCC-c--cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc
Confidence            752100 0  00001222345689999986421                      25789999999999999888654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.76  E-value=3.5e-16  Score=151.78  Aligned_cols=249  Identities=12%  Similarity=0.122  Sum_probs=157.6

Q ss_pred             eeecCceEEEEecCCCC-------------eeEEEE-cCccc-ceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCC
Q 045071          164 ASSSGGLVCWVSDHAGA-------------KTLILC-NPVTG-SLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLIS  228 (453)
Q Consensus       164 ~~s~~Gll~~~~~~~~~-------------~~~~v~-NP~T~-~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~  228 (453)
                      .+..++.|++.++.+..             ..++++ ++..+ +|..+++|+.+|.+... ..++   -+||++|+....
T Consensus         9 ~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~-~~~~---~~lyviGG~~~~   84 (323)
T TIGR03548         9 AGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGAS-VSVE---NGIYYIGGSNSS   84 (323)
T ss_pred             eeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEE-EEEC---CEEEEEcCCCCC
Confidence            44556666666653221             246666 45433 79999999988865433 3333   389999885322


Q ss_pred             cccccccceeEEEcccCCCCCcc----cccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEEEEEECCCCcEEEee
Q 045071          229 PYAVKNLSSESFHIDAGGFFSLW----GTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSVLAYDISANAWFNIQ  299 (453)
Q Consensus       229 ~~~~~~~~~evyds~~~~~~~~W----~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~yD~~~~~W~~i~  299 (453)
                      .   ....++.||..+    +.|    +.+++||..  .....+++++|+||++++.     ...+.+||+.+++|+.++
T Consensus        85 ~---~~~~v~~~d~~~----~~w~~~~~~~~~lp~~--~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~  155 (323)
T TIGR03548        85 E---RFSSVYRITLDE----SKEELICETIGNLPFT--FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP  155 (323)
T ss_pred             C---CceeEEEEEEcC----CceeeeeeEcCCCCcC--ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC
Confidence            1   234678899988    777    667778753  2235578899999999763     257999999999999874


Q ss_pred             cCCcc-ccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCE
Q 045071          300 APMRR-FLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEF  378 (453)
Q Consensus       300 ~p~~~-~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~  378 (453)
                       ++|. .+..+.++..+++||++|+.....     ..+++++|+.+++|+++..|+..-   ... .......++..++.
T Consensus       156 -~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-----~~~~~~yd~~~~~W~~~~~~~~~~---~p~-~~~~~~~~~~~~~~  225 (323)
T TIGR03548       156 -DFPGEPRVQPVCVKLQNELYVFGGGSNIA-----YTDGYKYSPKKNQWQKVADPTTDS---EPI-SLLGAASIKINESL  225 (323)
T ss_pred             -CCCCCCCCcceEEEECCEEEEEcCCCCcc-----ccceEEEecCCCeeEECCCCCCCC---Cce-eccceeEEEECCCE
Confidence             3332 234445678999999999854321     235788999899999988764210   000 00011122334678


Q ss_pred             EEEEEcCC-------------------------------------CeEEEEECCCCceEEcCCCCCcCCCCCCCC-CCCC
Q 045071          379 IVIVIRGS-------------------------------------DKALLFDLCMKSWQWIPRCPYVQANNCGGN-YGDG  420 (453)
Q Consensus       379 I~l~~~~~-------------------------------------~~v~~Yd~~~~~W~~l~~~p~~~~~~~~~~-~~~~  420 (453)
                      ||+.+...                                     +.+.+||+.+++|+.++.+|...+. ++++ ...+
T Consensus       226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~-~~~~~~~~~  304 (323)
T TIGR03548       226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARC-GAALLLTGN  304 (323)
T ss_pred             EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccC-chheEEECC
Confidence            88875421                                     4699999999999999877743221 2221 1112


Q ss_pred             CceeEEEEeccccCCc
Q 045071          421 EGELHGFAYEPRLATP  436 (453)
Q Consensus       421 ~~~~~~~~f~P~l~~~  436 (453)
                      ..++.|..-.|...+|
T Consensus       305 ~iyv~GG~~~pg~rt~  320 (323)
T TIGR03548       305 NIFSINGELKPGVRTP  320 (323)
T ss_pred             EEEEEeccccCCcCCc
Confidence            3555666667766654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA02790 Kelch-like protein; Provisional

Probab=99.75  E-value=7.8e-17  Score=163.97  Aligned_cols=189  Identities=13%  Similarity=0.164  Sum_probs=143.7

Q ss_pred             cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCce
Q 045071          138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAV  217 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~y  217 (453)
                      ....|||..++|..++....|+....+++.+|.|++.|+......+..|||.+++|..+|+|+.+|..+.++. .+   .
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~~---g  363 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-IN---N  363 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-EC---C
Confidence            3467999999999988544566555667789999998875444567899999999999999998887654433 33   3


Q ss_pred             EEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCcEEE
Q 045071          218 DVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFN  297 (453)
Q Consensus       218 kvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~  297 (453)
                      +||++||....     ..++|.||+++    +.|+.+++|+..+.  ...++.++|+||++++   ...+||+++++|+.
T Consensus       364 ~IYviGG~~~~-----~~~ve~ydp~~----~~W~~~~~m~~~r~--~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~  429 (480)
T PHA02790        364 VIYVIGGHSET-----DTTTEYLLPNH----DQWQFGPSTYYPHY--KSCALVFGRRLFLVGR---NAEFYCESSNTWTL  429 (480)
T ss_pred             EEEEecCcCCC-----CccEEEEeCCC----CEEEeCCCCCCccc--cceEEEECCEEEEECC---ceEEecCCCCcEeE
Confidence            99999985321     24679999999    99999998875322  2456789999999975   37899999999998


Q ss_pred             eecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEE
Q 045071          298 IQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAE  349 (453)
Q Consensus       298 i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~  349 (453)
                      + .|++..+....++..+|+||++||.....  ...  .|..||+.+++|+-
T Consensus       430 ~-~~m~~~r~~~~~~v~~~~IYviGG~~~~~--~~~--~ve~Yd~~~~~W~~  476 (480)
T PHA02790        430 I-DDPIYPRDNPELIIVDNKLLLIGGFYRGS--YID--TIEVYNNRTYSWNI  476 (480)
T ss_pred             c-CCCCCCccccEEEEECCEEEEECCcCCCc--ccc--eEEEEECCCCeEEe
Confidence            7 45665556677889999999999965321  112  46777888999964

>PLN02193 nitrile-specifier protein

Probab=99.75  E-value=9.2e-16  Score=155.72  Aligned_cols=244  Identities=16%  Similarity=0.200  Sum_probs=161.4

Q ss_pred             eeeeCCC----CCeEeccCC---CCCCCCeeeeecCceEEEEecCCC-----CeeEEEEcCcccceecCCCCC-CCCC-c
Q 045071          140 YLFDPHE----LSWYRISFA---LVPSEFSPASSSGGLVCWVSDHAG-----AKTLILCNPVTGSLSQLPPTL-RPRL-F  205 (453)
Q Consensus       140 ~~fdp~~----~~w~~l~l~---~lp~~~~~~~s~~Gll~~~~~~~~-----~~~~~v~NP~T~~w~~LP~~~-~~r~-~  205 (453)
                      +.++|..    ++|..+...   ..|+..+.++..++.|++.++...     ...++++|+.+++|..++++. .|+. .
T Consensus       140 y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~  219 (470)
T PLN02193        140 YISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSC  219 (470)
T ss_pred             EEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcc
Confidence            4456644    789988732   345655556666777777766321     135899999999999987652 2221 1


Q ss_pred             ceEEE-EEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCc-ccCCCCCeEEECCEEEEEecC--
Q 045071          206 PSIGL-KVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRL-CSLESGRMVQVNGKFYCMNYS--  281 (453)
Q Consensus       206 ~~~~~-~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~-~~~~~~~~v~~~G~lY~~~~~--  281 (453)
                      ...++ .++   -+||++|+.....   ....+++||+.+    ++|+.+.+++.. .....+.++.++++||++++.  
T Consensus       220 ~~~~~v~~~---~~lYvfGG~~~~~---~~ndv~~yD~~t----~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~  289 (470)
T PLN02193        220 LGVRMVSIG---STLYVFGGRDASR---QYNGFYSFDTTT----NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA  289 (470)
T ss_pred             cceEEEEEC---CEEEEECCCCCCC---CCccEEEEECCC----CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC
Confidence            11222 233   3899998853221   234678999999    999998776210 122234567789999999753  


Q ss_pred             ---CCEEEEEECCCCcEEEeecC--CccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHH
Q 045071          282 ---PFSVLAYDISANAWFNIQAP--MRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQ  356 (453)
Q Consensus       282 ---~~~i~~yD~~~~~W~~i~~p--~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~  356 (453)
                         ...+.+||+.+++|+.+..|  ++..+..+.++..+|+||++++.....     .-.+|.||..+++|+++..++..
T Consensus       290 ~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-----~~dv~~yD~~t~~W~~~~~~g~~  364 (470)
T PLN02193        290 TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-----VDDVHYYDPVQDKWTQVETFGVR  364 (470)
T ss_pred             CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-----cCceEEEECCCCEEEEeccCCCC
Confidence               24689999999999987543  223334556777899999999864321     12688999989999998765210


Q ss_pred             HHHHhhcccCCCcEEEEeeCCEEEEEEcC--------------CCeEEEEECCCCceEEcCCC
Q 045071          357 LYAQFAEIEAGNGFDTIGHGEFIVIVIRG--------------SDKALLFDLCMKSWQWIPRC  405 (453)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--------------~~~v~~Yd~~~~~W~~l~~~  405 (453)
                      -       ..+....++..++.||+.+..              .+.+.+||+.+++|+.++.+
T Consensus       365 P-------~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~  420 (470)
T PLN02193        365 P-------SERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKF  420 (470)
T ss_pred             C-------CCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccC
Confidence            0       011233455678899987652              13589999999999998754

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.73  E-value=4.5e-16  Score=148.61  Aligned_cols=309  Identities=12%  Similarity=0.157  Sum_probs=164.8

Q ss_pred             ccCCChHHHHHHHHhcCC-hhhhhhhhhccccccccccCccchhhhhccCCCCceEEEEeccCCcccccceeeecCCccc
Q 045071           50 IWSKLPQRLLDRVLAFLP-PPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSI  128 (453)
Q Consensus        50 ~w~~LP~dll~~IL~rLp-~~~l~r~r~VCK~W~~~i~s~~F~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  128 (453)
                      .|++||+|||+.|..||| ..+++|||+|||.||+.+....   . ....++.||++........     .+.. ...+ 
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~-~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~-   71 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K-KNPFRTRPLILFNPINPSE-----TLTD-DRSY-   71 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c-cCCcccccccccCcccCCC-----Cccc-cccc-
Confidence            599999999999999997 5699999999999999876411   0 0001223555532100000     0000 0000 


Q ss_pred             ccccccccccceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCC--CCC--
Q 045071          129 RSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLR--PRL--  204 (453)
Q Consensus       129 ~~~~~~~~~~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~--~r~--  204 (453)
                          .  +.....+.+.  ...+++++        .++..|+|.-.........+.+.||+++.-..+|+...  -..  
T Consensus        72 ----~--~~~~~~ls~~--~~~r~~~~--------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v  135 (373)
T PLN03215         72 ----I--SRPGAFLSRA--AFFRVTLS--------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTV  135 (373)
T ss_pred             ----c--ccccceeeee--EEEEeecC--------CCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEE
Confidence                0  0000011111  12233211        13567888876554345678899999998766664210  000  


Q ss_pred             ---cceEEEEE-cCC-----ce--EEEEEccCCCCc--cccc--ccceeEEEcccCCCCCcccccCCCCCcccCCCCCeE
Q 045071          205 ---FPSIGLKV-TPT-----AV--DVTVAGDDLISP--YAVK--NLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMV  269 (453)
Q Consensus       205 ---~~~~~~~~-~~~-----~y--kvv~~g~~~~~~--~~~~--~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v  269 (453)
                         .....+.. ...     .|  ++++. -...+.  +++.  .....+.....    +.|+.+..+..    .-.+.+
T Consensus       136 ~ei~~~y~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vl~i~~~g~l~~w~~----~~Wt~l~~~~~----~~~DIi  206 (373)
T PLN03215        136 SEIREAYQVLDWAKRRETRPGYQRSALVK-VKEGDNHRDGVLGIGRDGKINYWDG----NVLKALKQMGY----HFSDII  206 (373)
T ss_pred             EEccceEEEEecccccccccceeEEEEEE-eecCCCcceEEEEEeecCcEeeecC----CeeeEccCCCc----eeeEEE
Confidence               00001100 000     12  22221 110111  1110  00011111223    78998865332    125789


Q ss_pred             EECCEEEEEecCCCEEEEEECCCCcEEEeecCCc-----cc-cCCCceeeeCCeEEEEEEEeccC----------CCCCC
Q 045071          270 QVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMR-----RF-LRSPSLLDSNGKLILVAAVEKSK----------LNVPK  333 (453)
Q Consensus       270 ~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~-----~~-~~~~~lv~~~g~L~vv~~~~~~~----------~~~~~  333 (453)
                      +++|++|.++.. ..+.++|..-+ -.++..+..     .. ....++|++.|+|++|.......          ...+.
T Consensus       207 ~~kGkfYAvD~~-G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~  284 (373)
T PLN03215        207 VHKGQTYALDSI-GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTV  284 (373)
T ss_pred             EECCEEEEEcCC-CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCccccccccccccccee
Confidence            999999999654 57888874321 112211110     11 12357999999999999853211          11235


Q ss_pred             cEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEE------eeCCEEEEEEcCCCeEEEEECCCCceEEc
Q 045071          334 SLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTI------GHGEFIVIVIRGSDKALLFDLCMKSWQWI  402 (453)
Q Consensus       334 ~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~------~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l  402 (453)
                      .++||++|.+..+|++|.+|+....  |....  ..+.+.      ..+|+||+...  ....+||++.++-..+
T Consensus       285 ~f~VfklD~~~~~WveV~sLgd~aL--FlG~~--~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~~~~  353 (373)
T PLN03215        285 GFKVYKFDDELAKWMEVKTLGDNAF--VMATD--TCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNGSSI  353 (373)
T ss_pred             EEEEEEEcCCCCcEEEecccCCeEE--EEECC--ccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCccce
Confidence            7899999988899999999987321  11111  122221      24799999854  5567999999985444

>PLN02153 epithiospecifier protein

Probab=99.70  E-value=4.9e-15  Score=144.78  Aligned_cols=206  Identities=14%  Similarity=0.121  Sum_probs=137.6

Q ss_pred             cceeeeCCCCCeEecc-CCCCCCC---CeeeeecCceEEEEecCCC---CeeEEEEcCcccceecCCCC-----CCCCCc
Q 045071          138 EGYLFDPHELSWYRIS-FALVPSE---FSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPT-----LRPRLF  205 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~-l~~lp~~---~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~-----~~~r~~  205 (453)
                      ..+.||+..++|..++ ++..|+.   ...+++.++.|++.++...   ...+++|||.+++|..+++|     +.+|..
T Consensus        51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~  130 (341)
T PLN02153         51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF  130 (341)
T ss_pred             cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence            4578999999999876 3334442   2345667888888776422   24689999999999999887     455655


Q ss_pred             ceEEEEEcCCceEEEEEccCCCCcc---cccccceeEEEcccCCCCCcccccCCCCCc-ccCCCCCeEEECCEEEEEecC
Q 045071          206 PSIGLKVTPTAVDVTVAGDDLISPY---AVKNLSSESFHIDAGGFFSLWGTTSSLPRL-CSLESGRMVQVNGKFYCMNYS  281 (453)
Q Consensus       206 ~~~~~~~~~~~ykvv~~g~~~~~~~---~~~~~~~evyds~~~~~~~~W~~~~~~p~~-~~~~~~~~v~~~G~lY~~~~~  281 (453)
                      +.++. .+   -|||++|+......   ......+++||+++    ++|+.++.+... ........+.++|++|++.+.
T Consensus       131 ~~~~~-~~---~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~----~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~  202 (341)
T PLN02153        131 HSMAS-DE---NHVYVFGGVSKGGLMKTPERFRTIEAYNIAD----GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF  202 (341)
T ss_pred             eEEEE-EC---CEEEEECCccCCCccCCCcccceEEEEECCC----CeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence            44322 22   38999988532110   00123578999999    999988765321 122224467799999998532


Q ss_pred             -------------CCEEEEEECCCCcEEEeec--CCccccCCCceeeeCCeEEEEEEEeccC---C-C-CCCcEEEEEee
Q 045071          282 -------------PFSVLAYDISANAWFNIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSK---L-N-VPKSLRLWSLQ  341 (453)
Q Consensus       282 -------------~~~i~~yD~~~~~W~~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~---~-~-~~~~i~vw~ld  341 (453)
                                   ...+.+||+.+++|+++..  .+|..+.....+..+++||++|+.....   . . ....-++|.||
T Consensus       203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d  282 (341)
T PLN02153        203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALD  282 (341)
T ss_pred             ccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEE
Confidence                         2468999999999998753  1333334455678899999999963210   0 0 01112789999


Q ss_pred             cCCCCeEEEe
Q 045071          342 ACGTLWAEIE  351 (453)
Q Consensus       342 ~~~~~W~~v~  351 (453)
                      ..+++|+++.
T Consensus       283 ~~~~~W~~~~  292 (341)
T PLN02153        283 TETLVWEKLG  292 (341)
T ss_pred             cCccEEEecc
Confidence            9999999875

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.70  E-value=4.6e-15  Score=146.72  Aligned_cols=233  Identities=15%  Similarity=0.116  Sum_probs=149.8

Q ss_pred             eeeecCceEEEEecCCCCeeEEEEcCc--ccceecCCCCCC-CCCcceEEEEEcCCceEEEEEccCCCCc---ccccccc
Q 045071          163 PASSSGGLVCWVSDHAGAKTLILCNPV--TGSLSQLPPTLR-PRLFPSIGLKVTPTAVDVTVAGDDLISP---YAVKNLS  236 (453)
Q Consensus       163 ~~~s~~Gll~~~~~~~~~~~~~v~NP~--T~~w~~LP~~~~-~r~~~~~~~~~~~~~ykvv~~g~~~~~~---~~~~~~~  236 (453)
                      ..+..++.|++.++.. ...++++|+.  +++|..+++++. +|..+.+ ...+   .+||++|+.....   .......
T Consensus        33 ~~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~-v~~~---~~IYV~GG~~~~~~~~~~~~~~~  107 (376)
T PRK14131         33 TGAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVA-AFID---GKLYVFGGIGKTNSEGSPQVFDD  107 (376)
T ss_pred             eEEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceE-EEEC---CEEEEEcCCCCCCCCCceeEccc
Confidence            4566788888876643 2457888875  578999999874 5654432 2233   3899999853210   0112356


Q ss_pred             eeEEEcccCCCCCcccccCC-CCCcccCCCCCeEE-ECCEEEEEecCC--------------------------------
Q 045071          237 SESFHIDAGGFFSLWGTTSS-LPRLCSLESGRMVQ-VNGKFYCMNYSP--------------------------------  282 (453)
Q Consensus       237 ~evyds~~~~~~~~W~~~~~-~p~~~~~~~~~~v~-~~G~lY~~~~~~--------------------------------  282 (453)
                      +++||..+    ++|+.++. .|+.  .....++. ++|+||++++..                                
T Consensus       108 v~~YD~~~----n~W~~~~~~~p~~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~  181 (376)
T PRK14131        108 VYKYDPKT----NSWQKLDTRSPVG--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK  181 (376)
T ss_pred             EEEEeCCC----CEEEeCCCCCCCc--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence            78999999    99999875 3432  12223344 799999997631                                


Q ss_pred             -------CEEEEEECCCCcEEEeecCCcc-ccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecC
Q 045071          283 -------FSVLAYDISANAWFNIQAPMRR-FLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMP  354 (453)
Q Consensus       283 -------~~i~~yD~~~~~W~~i~~p~~~-~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp  354 (453)
                             ..+++||+.+++|+.+. ++|. ......++..+++||++|+...... ....+..+++++++++|+++..||
T Consensus       182 ~~~~~~~~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~-~~~~~~~~~~~~~~~~W~~~~~~p  259 (376)
T PRK14131        182 PEDYFFNKEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGL-RTDAVKQGKFTGNNLKWQKLPDLP  259 (376)
T ss_pred             hhhcCcCceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCc-CChhheEEEecCCCcceeecCCCC
Confidence                   46899999999999874 4443 3344567788999999999643221 122334455666788999999997


Q ss_pred             HHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC----------------------CeEEEEECCCCceEEcCCCCCcCC
Q 045071          355 QQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS----------------------DKALLFDLCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~----------------------~~v~~Yd~~~~~W~~l~~~p~~~~  410 (453)
                      ...... .. .......++..++.||+.+...                      ..+.+||+++++|+.++.+|..+.
T Consensus       260 ~~~~~~-~~-~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~  335 (376)
T PRK14131        260 PAPGGS-SQ-EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA  335 (376)
T ss_pred             CCCcCC-cC-CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc
Confidence            622100 00 0001122334678899876421                      135689999999999988887654

>PHA03098 kelch-like protein; Provisional

Probab=99.69  E-value=1.9e-15  Score=156.80  Aligned_cols=201  Identities=17%  Similarity=0.223  Sum_probs=148.5

Q ss_pred             cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCC---CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcC
Q 045071          138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTP  214 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~  214 (453)
                      ....||+.+++|..++....|+....+++.+|.|++.|+...   ...+.+|||.+++|..+++++.+|..+.++. .+ 
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~-  389 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VN-  389 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-EC-
Confidence            456899999999988744446655666777888888877532   3468899999999999999998887655433 22 


Q ss_pred             CceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC--------CEEE
Q 045071          215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP--------FSVL  286 (453)
Q Consensus       215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~--------~~i~  286 (453)
                        .+||++||.....  .....+++||+.+    ++|+.++++|...  ....++.++|++|++++..        ..+.
T Consensus       390 --~~iYv~GG~~~~~--~~~~~v~~yd~~t----~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  459 (534)
T PHA03098        390 --NLIYVIGGISKND--ELLKTVECFSLNT----NKWSKGSPLPISH--YGGCAIYHDGKIYVIGGISYIDNIKVYNIVE  459 (534)
T ss_pred             --CEEEEECCcCCCC--cccceEEEEeCCC----CeeeecCCCCccc--cCceEEEECCEEEEECCccCCCCCcccceEE
Confidence              3899998842211  1235679999999    9999998887532  2355788999999997631        3489


Q ss_pred             EEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCH
Q 045071          287 AYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQ  355 (453)
Q Consensus       287 ~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~  355 (453)
                      +||+.+++|+.+. +++..+....++..+|+||++||......    .-.|+.||..+++|+.+..+|+
T Consensus       460 ~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        460 SYNPVTNKWTELS-SLNFPRINASLCIFNNKIYVVGGDKYEYY----INEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             EecCCCCceeeCC-CCCcccccceEEEECCEEEEEcCCcCCcc----cceeEEEeCCCCEEEecCCCcc
Confidence            9999999999874 34433445567778999999998653320    1267888998999999988876

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.64  E-value=8.5e-14  Score=137.71  Aligned_cols=242  Identities=15%  Similarity=0.124  Sum_probs=154.3

Q ss_pred             ceeeeCC--CCCeEecc-CCCCCCCCeeeeecCceEEEEecCCC---------CeeEEEEcCcccceecCCCC-CCCCCc
Q 045071          139 GYLFDPH--ELSWYRIS-FALVPSEFSPASSSGGLVCWVSDHAG---------AKTLILCNPVTGSLSQLPPT-LRPRLF  205 (453)
Q Consensus       139 ~~~fdp~--~~~w~~l~-l~~lp~~~~~~~s~~Gll~~~~~~~~---------~~~~~v~NP~T~~w~~LP~~-~~~r~~  205 (453)
                      .+.||..  .++|..++ +|..++....+++.++.|++.++...         ...+++|||.+++|..++++ +.++..
T Consensus        52 ~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~  131 (376)
T PRK14131         52 WYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAG  131 (376)
T ss_pred             EEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccc
Confidence            4567775  47899887 44445655566778898888876432         24688999999999999863 333332


Q ss_pred             ceEEEE-EcCCceEEEEEccCCCCccc-------------------------------ccccceeEEEcccCCCCCcccc
Q 045071          206 PSIGLK-VTPTAVDVTVAGDDLISPYA-------------------------------VKNLSSESFHIDAGGFFSLWGT  253 (453)
Q Consensus       206 ~~~~~~-~~~~~ykvv~~g~~~~~~~~-------------------------------~~~~~~evyds~~~~~~~~W~~  253 (453)
                      +. ++. .+   -+||++|+.....+.                               .....+++||+.+    +.|..
T Consensus       132 ~~-~~~~~~---~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t----~~W~~  203 (376)
T PRK14131        132 HV-AVSLHN---GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPST----NQWKN  203 (376)
T ss_pred             eE-EEEeeC---CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCC----CeeeE
Confidence            22 222 33   399999885321000                               0124579999999    99999


Q ss_pred             cCCCCCcccCCCCCeEEECCEEEEEecC------CC--EEEEEECCCCcEEEeecCCccccC--------CCceeeeCCe
Q 045071          254 TSSLPRLCSLESGRMVQVNGKFYCMNYS------PF--SVLAYDISANAWFNIQAPMRRFLR--------SPSLLDSNGK  317 (453)
Q Consensus       254 ~~~~p~~~~~~~~~~v~~~G~lY~~~~~------~~--~i~~yD~~~~~W~~i~~p~~~~~~--------~~~lv~~~g~  317 (453)
                      ++++|... ......+.++++||++++.      ..  ....||+++++|..+. ++|..+.        ....+..+|+
T Consensus       204 ~~~~p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~a~~~~~~  281 (376)
T PRK14131        204 AGESPFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-DLPPAPGGSSQEGVAGAFAGYSNGV  281 (376)
T ss_pred             CCcCCCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC-CCCCCCcCCcCCccceEeceeECCE
Confidence            98887421 2224567789999999753      11  2345688899999873 4432211        1113568999


Q ss_pred             EEEEEEEeccC---------CC----CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071          318 LILVAAVEKSK---------LN----VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR  384 (453)
Q Consensus       318 L~vv~~~~~~~---------~~----~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~  384 (453)
                      ||++|+.....         ..    ......+..+|.++++|+++..||...          ....++..+|.||+.+.
T Consensus       282 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r----------~~~~av~~~~~iyv~GG  351 (376)
T PRK14131        282 LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL----------AYGVSVSWNNGVLLIGG  351 (376)
T ss_pred             EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc----------cceEEEEeCCEEEEEcC
Confidence            99999854210         00    000112334566688999999998732          12245667899999875


Q ss_pred             C------CCeEEEEECCCCceE
Q 045071          385 G------SDKALLFDLCMKSWQ  400 (453)
Q Consensus       385 ~------~~~v~~Yd~~~~~W~  400 (453)
                      .      ...+.+|+..++.+.
T Consensus       352 ~~~~~~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        352 ETAGGKAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             CCCCCcEeeeEEEEEEcCCEEE
Confidence            3      247888988887775

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.63  E-value=7.1e-14  Score=137.01  Aligned_cols=225  Identities=16%  Similarity=0.168  Sum_probs=143.1

Q ss_pred             ceeeeC--CCCCeEecc-CCCCCCCCeeeeecCceEEEEecCCC---------CeeEEEEcCcccceecCCC-CCCCCCc
Q 045071          139 GYLFDP--HELSWYRIS-FALVPSEFSPASSSGGLVCWVSDHAG---------AKTLILCNPVTGSLSQLPP-TLRPRLF  205 (453)
Q Consensus       139 ~~~fdp--~~~~w~~l~-l~~lp~~~~~~~s~~Gll~~~~~~~~---------~~~~~v~NP~T~~w~~LP~-~~~~r~~  205 (453)
                      .+.||+  ..++|..++ +|..++....+++.+|.|++.++...         ...+++|||.+++|..++. ++..+..
T Consensus        31 ~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~  110 (346)
T TIGR03547        31 WYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLG  110 (346)
T ss_pred             eEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccc
Confidence            456775  568899987 44346655667788899998887421         2468899999999999974 3433332


Q ss_pred             ceEEE-EEcCCceEEEEEccCCCCccc-------------------------------ccccceeEEEcccCCCCCcccc
Q 045071          206 PSIGL-KVTPTAVDVTVAGDDLISPYA-------------------------------VKNLSSESFHIDAGGFFSLWGT  253 (453)
Q Consensus       206 ~~~~~-~~~~~~ykvv~~g~~~~~~~~-------------------------------~~~~~~evyds~~~~~~~~W~~  253 (453)
                      +. ++ ..+   -|||++|+.....+.                               .....+++||+.+    ++|+.
T Consensus       111 ~~-~~~~~~---g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t----~~W~~  182 (346)
T TIGR03547       111 AS-GFSLHN---GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST----NQWRN  182 (346)
T ss_pred             ee-EEEEeC---CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCC----CceeE
Confidence            22 22 233   399999885321000                               0124689999999    99999


Q ss_pred             cCCCCCcccCCCCCeEEECCEEEEEecCC------CEEEEEE--CCCCcEEEeecCCcccc-------CCCceeeeCCeE
Q 045071          254 TSSLPRLCSLESGRMVQVNGKFYCMNYSP------FSVLAYD--ISANAWFNIQAPMRRFL-------RSPSLLDSNGKL  318 (453)
Q Consensus       254 ~~~~p~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~yD--~~~~~W~~i~~p~~~~~-------~~~~lv~~~g~L  318 (453)
                      +++||... ......+.++|+||++++..      ..+..||  +++++|+.+ .+++..+       ..+..+..+|+|
T Consensus       183 ~~~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~-~~m~~~r~~~~~~~~~~~a~~~~~~I  260 (346)
T TIGR03547       183 LGENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL-PPLPPPKSSSQEGLAGAFAGISNGVL  260 (346)
T ss_pred             CccCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec-CCCCCCCCCccccccEEeeeEECCEE
Confidence            99887421 12244678899999997531      2345555  567799887 3443321       112356789999


Q ss_pred             EEEEEEeccC---------------CCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEE
Q 045071          319 ILVAAVEKSK---------------LNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVI  383 (453)
Q Consensus       319 ~vv~~~~~~~---------------~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~  383 (453)
                      |++|+.....               ......+++|  +.++++|+.+..||...          ....++..+|.||+.+
T Consensus       261 yv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y--d~~~~~W~~~~~lp~~~----------~~~~~~~~~~~iyv~G  328 (346)
T TIGR03547       261 LVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY--ALDNGKWSKVGKLPQGL----------AYGVSVSWNNGVLLIG  328 (346)
T ss_pred             EEeecCCCCCchhhhhcCCccccCCCCceeEeeEE--EecCCcccccCCCCCCc----------eeeEEEEcCCEEEEEe
Confidence            9999864210               0001234555  44578999999998632          1223455799999987


Q ss_pred             cC
Q 045071          384 RG  385 (453)
Q Consensus       384 ~~  385 (453)
                      ..
T Consensus       329 G~  330 (346)
T TIGR03547       329 GE  330 (346)
T ss_pred             cc
Confidence            53

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=99.62  E-value=8e-14  Score=141.60  Aligned_cols=206  Identities=16%  Similarity=0.180  Sum_probs=139.8

Q ss_pred             cceeeeCCCCCeEeccCC-CCCC---CCeeeeecCceEEEEecCCC---CeeEEEEcCcccceecCCCC---CCCCCcce
Q 045071          138 EGYLFDPHELSWYRISFA-LVPS---EFSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPT---LRPRLFPS  207 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~-~lp~---~~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~---~~~r~~~~  207 (453)
                      ..+.||+.+++|..++.. ..|+   ....+++.++.|++.++...   .+.++++||.+++|..++++   +.+|..+.
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~  273 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS  273 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence            356899999999987632 2332   23345667888888876432   35789999999999999887   56676554


Q ss_pred             EEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC-cccCCCCCeEEECCEEEEEecC----C
Q 045071          208 IGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR-LCSLESGRMVQVNGKFYCMNYS----P  282 (453)
Q Consensus       208 ~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~-~~~~~~~~~v~~~G~lY~~~~~----~  282 (453)
                      +.. .+   .+||++|+.....   .....++||..+    ++|+.++.... ........+++++|++|++.+.    .
T Consensus       274 ~~~-~~---~~iYv~GG~~~~~---~~~~~~~yd~~t----~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~  342 (470)
T PLN02193        274 MAA-DE---ENVYVFGGVSATA---RLKTLDSYNIVD----KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEV  342 (470)
T ss_pred             EEE-EC---CEEEEECCCCCCC---CcceEEEEECCC----CEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCcc
Confidence            322 22   3899998853221   234578999999    99998754211 0112224567789999998653    2


Q ss_pred             CEEEEEECCCCcEEEeec--CCccccCCCceeeeCCeEEEEEEEeccC---CCCCCcE--EEEEeecCCCCeEEEeecC
Q 045071          283 FSVLAYDISANAWFNIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSK---LNVPKSL--RLWSLQACGTLWAEIERMP  354 (453)
Q Consensus       283 ~~i~~yD~~~~~W~~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~---~~~~~~i--~vw~ld~~~~~W~~v~~mp  354 (453)
                      ..+.+||+.+++|+.+..  +.|..+..+..+..+++||++|+.....   ......+  .+|.||..+++|+++..++
T Consensus       343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~  421 (470)
T PLN02193        343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG  421 (470)
T ss_pred             CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence            579999999999998843  1233344456778899999999964311   0000111  5899999999999887664

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.62  E-value=9.7e-14  Score=134.67  Aligned_cols=216  Identities=13%  Similarity=0.117  Sum_probs=140.4

Q ss_pred             CeEeccCCCCCCCCeeeeecCceEEEEecCCC---CeeEEEEcCcccce----ecCCCCCCCCCcceEEEEEcCCceEEE
Q 045071          148 SWYRISFALVPSEFSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSL----SQLPPTLRPRLFPSIGLKVTPTAVDVT  220 (453)
Q Consensus       148 ~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w----~~LP~~~~~r~~~~~~~~~~~~~ykvv  220 (453)
                      +|..++....|+.....++.++.|++.++...   ...++.+|+.+++|    ..+|+++.+|..+.+++. +   .+||
T Consensus        52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~---~~iY  127 (323)
T TIGR03548        52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-D---GTLY  127 (323)
T ss_pred             eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C---CEEE
Confidence            68887632344543444555677777665322   35788999999987    789999888765544333 3   3899


Q ss_pred             EEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC----CEEEEEECCCCcEE
Q 045071          221 VAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP----FSVLAYDISANAWF  296 (453)
Q Consensus       221 ~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~----~~i~~yD~~~~~W~  296 (453)
                      ++|+.....   ....+++||+.+    ++|+.++++|... .....++.++++||++++..    ..+++||+.+++|+
T Consensus       128 v~GG~~~~~---~~~~v~~yd~~~----~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       128 VGGGNRNGK---PSNKSYLFNLET----QEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             EEeCcCCCc---cCceEEEEcCCC----CCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            998852111   235679999999    9999998776421 22234567999999997642    34789999999999


Q ss_pred             EeecC----CccccC-CCceeeeCCeEEEEEEEeccCC-------CC---------------------CCcEEEEEeecC
Q 045071          297 NIQAP----MRRFLR-SPSLLDSNGKLILVAAVEKSKL-------NV---------------------PKSLRLWSLQAC  343 (453)
Q Consensus       297 ~i~~p----~~~~~~-~~~lv~~~g~L~vv~~~~~~~~-------~~---------------------~~~i~vw~ld~~  343 (453)
                      .+...    .|.... ...++..+++||++|+......       ..                     .-.=.|+.||..
T Consensus       200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  279 (323)
T TIGR03548       200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR  279 (323)
T ss_pred             ECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC
Confidence            87431    222221 2234456899999998643100       00                     000157888988


Q ss_pred             CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071          344 GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR  384 (453)
Q Consensus       344 ~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~  384 (453)
                      +++|+.+..||..         .+.....+..++.||+.+.
T Consensus       280 ~~~W~~~~~~p~~---------~r~~~~~~~~~~~iyv~GG  311 (323)
T TIGR03548       280 TGKWKSIGNSPFF---------ARCGAALLLTGNNIFSING  311 (323)
T ss_pred             CCeeeEccccccc---------ccCchheEEECCEEEEEec
Confidence            9999999888631         1123334667899999865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.07  E-value=1.1e-08  Score=91.16  Aligned_cols=227  Identities=14%  Similarity=0.135  Sum_probs=136.7

Q ss_pred             ceeeeCCCCCeEeccC-----------CCCC--CCCeeeeecCceEEEEecCC----CCeeEEEEcCcccceecCCC---
Q 045071          139 GYLFDPHELSWYRISF-----------ALVP--SEFSPASSSGGLVCWVSDHA----GAKTLILCNPVTGSLSQLPP---  198 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l-----------~~lp--~~~~~~~s~~Gll~~~~~~~----~~~~~~v~NP~T~~w~~LP~---  198 (453)
                      ..+++..+-+|..+|.           |..|  +--+.+..-.+.+++.++.+    ..+.++-+||.|+.|.+.--   
T Consensus        46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~  125 (392)
T KOG4693|consen   46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF  125 (392)
T ss_pred             eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeee
Confidence            3456666667877763           1122  11233444556666665432    24568899999999986422   


Q ss_pred             CCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccC---CCCCcccCCCCCeEEECCEE
Q 045071          199 TLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTS---SLPRLCSLESGRMVQVNGKF  275 (453)
Q Consensus       199 ~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~---~~p~~~~~~~~~~v~~~G~l  275 (453)
                      .|..|--+. +.+..   ...++.|+...+... ....+.++|..+    .+|+.+.   ..|+.+.+  +.++++++.+
T Consensus       126 vPgaRDGHs-AcV~g---n~MyiFGGye~~a~~-FS~d~h~ld~~T----mtWr~~~Tkg~PprwRDF--H~a~~~~~~M  194 (392)
T KOG4693|consen  126 VPGARDGHS-ACVWG---NQMYIFGGYEEDAQR-FSQDTHVLDFAT----MTWREMHTKGDPPRWRDF--HTASVIDGMM  194 (392)
T ss_pred             cCCccCCce-eeEEC---cEEEEecChHHHHHh-hhccceeEeccc----eeeeehhccCCCchhhhh--hhhhhccceE
Confidence            122232222 22322   256667764222111 123345667777    8999874   34443333  5578889999


Q ss_pred             EEEecCC--------------CEEEEEECCCCcEEEeec-C-CccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEE
Q 045071          276 YCMNYSP--------------FSVLAYDISANAWFNIQA-P-MRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWS  339 (453)
Q Consensus       276 Y~~~~~~--------------~~i~~yD~~~~~W~~i~~-p-~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~  339 (453)
                      |+.++..              +.|+++|++++.|...+. + .|..++.+.....+|++|++|+.... ++ ..--++|.
T Consensus       195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~-ln-~HfndLy~  272 (392)
T KOG4693|consen  195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT-LN-VHFNDLYC  272 (392)
T ss_pred             EEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchh-hh-hhhcceee
Confidence            9986531              479999999999987522 1 24566777888999999999987542 10 11227999


Q ss_pred             eecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC
Q 045071          340 LQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG  385 (453)
Q Consensus       340 ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~  385 (453)
                      +|+.+..|+.+..-...       .+.++.-.|+..|++||+.+..
T Consensus       273 FdP~t~~W~~I~~~Gk~-------P~aRRRqC~~v~g~kv~LFGGT  311 (392)
T KOG4693|consen  273 FDPKTSMWSVISVRGKY-------PSARRRQCSVVSGGKVYLFGGT  311 (392)
T ss_pred             cccccchheeeeccCCC-------CCcccceeEEEECCEEEEecCC
Confidence            99999999987543210       0112222345568999998654

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.00  E-value=1.5e-08  Score=90.35  Aligned_cols=205  Identities=10%  Similarity=0.133  Sum_probs=133.7

Q ss_pred             CeeEEEEcCcccceecCCCCCC-------------CCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCC
Q 045071          180 AKTLILCNPVTGSLSQLPPTLR-------------PRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGG  246 (453)
Q Consensus       180 ~~~~~v~NP~T~~w~~LP~~~~-------------~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~  246 (453)
                      .-.+.++|..+-+|.++|+-..             .|.-+.+ +.+.   -|+++-|++...+.  .-.....||+++  
T Consensus        43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtv-V~y~---d~~yvWGGRND~eg--aCN~Ly~fDp~t--  114 (392)
T KOG4693|consen   43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTV-VEYQ---DKAYVWGGRNDDEG--ACNLLYEFDPET--  114 (392)
T ss_pred             cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceE-EEEc---ceEEEEcCccCccc--ccceeeeecccc--
Confidence            3478999999999999998211             1211221 2222   38888888643332  123457899999  


Q ss_pred             CCCcccccC---CCCCcccCCCCCeEEECCEEEEEecC-------CCEEEEEECCCCcEEEeec--CCccccCCCceeee
Q 045071          247 FFSLWGTTS---SLPRLCSLESGRMVQVNGKFYCMNYS-------PFSVLAYDISANAWFNIQA--PMRRFLRSPSLLDS  314 (453)
Q Consensus       247 ~~~~W~~~~---~~p~~~~~~~~~~v~~~G~lY~~~~~-------~~~i~~yD~~~~~W~~i~~--p~~~~~~~~~lv~~  314 (453)
                        +.|.+..   .+|.  ..+.+.+++.++.+|+.++.       ...+.++|+++.+|+.+..  .+|..+..+..++.
T Consensus       115 --~~W~~p~v~G~vPg--aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~  190 (392)
T KOG4693|consen  115 --NVWKKPEVEGFVPG--ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI  190 (392)
T ss_pred             --ccccccceeeecCC--ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhc
Confidence              9998753   3554  23446678899999998753       2478999999999999843  23444444555678


Q ss_pred             CCeEEEEEEEeccC--C---CCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc-C---
Q 045071          315 NGKLILVAAVEKSK--L---NVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR-G---  385 (453)
Q Consensus       315 ~g~L~vv~~~~~~~--~---~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~-~---  385 (453)
                      ++..|++|+..+..  .   +....-+|-.||..++.|.....-+  +     ...++++-..++.++.+|+.+. .   
T Consensus       191 ~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~--~-----~P~GRRSHS~fvYng~~Y~FGGYng~l  263 (392)
T KOG4693|consen  191 DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT--M-----KPGGRRSHSTFVYNGKMYMFGGYNGTL  263 (392)
T ss_pred             cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC--c-----CCCcccccceEEEcceEEEecccchhh
Confidence            89999999865531  1   1112235666777789998642211  0     0113344456677888888753 1   


Q ss_pred             ---CCeEEEEECCCCceEEcC
Q 045071          386 ---SDKALLFDLCMKSWQWIP  403 (453)
Q Consensus       386 ---~~~v~~Yd~~~~~W~~l~  403 (453)
                         .+.+..||+.+..|..+.
T Consensus       264 n~HfndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  264 NVHFNDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             hhhhcceeecccccchheeee
Confidence               578999999999999873

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.95  E-value=1.1e-08  Score=85.17  Aligned_cols=85  Identities=24%  Similarity=0.493  Sum_probs=65.3

Q ss_pred             eEEECCEEEEEecC----CCEEEEEECCCCcEEEeecC--CccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEee
Q 045071          268 MVQVNGKFYCMNYS----PFSVLAYDISANAWFNIQAP--MRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQ  341 (453)
Q Consensus       268 ~v~~~G~lY~~~~~----~~~i~~yD~~~~~W~~i~~p--~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld  341 (453)
                      ++++||.+||+...    ...|++||+++++|+.++.|  .........|++++|+|.++.......   ...++||.|+
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~iWvLe   77 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSIDIWVLE   77 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEEEEEee
Confidence            37899999999764    46899999999999999887  222334568999999999988654321   3468999998


Q ss_pred             cC-CCCeEEEee-cCH
Q 045071          342 AC-GTLWAEIER-MPQ  355 (453)
Q Consensus       342 ~~-~~~W~~v~~-mp~  355 (453)
                      +. +++|++... +|.
T Consensus        78 D~~k~~Wsk~~~~lp~   93 (129)
T PF08268_consen   78 DYEKQEWSKKHIVLPP   93 (129)
T ss_pred             ccccceEEEEEEECCh
Confidence            65 678998755 554

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.83  E-value=1.5e-07  Score=88.90  Aligned_cols=208  Identities=13%  Similarity=0.177  Sum_probs=126.6

Q ss_pred             eeEEEEcCcccceecCCC--CCCCCCcceEEEEEcCCceEEEEEccCCCCcccc---cccceeEEEcccCCCCCcccccC
Q 045071          181 KTLILCNPVTGSLSQLPP--TLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAV---KNLSSESFHIDAGGFFSLWGTTS  255 (453)
Q Consensus       181 ~~~~v~NP~T~~w~~LP~--~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~---~~~~~evyds~~~~~~~~W~~~~  255 (453)
                      +.+++||-.+++|+.+-.  .|.||.-+.+  ++-+.. .+++.|+...+|.+.   .......|+..+    ++|+.+.
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~--va~~s~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~t----rkweql~  170 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQA--VAVPSN-ILWLFGGEFASPNQEQFHHYKDLWLFDLKT----RKWEQLE  170 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCcccee--EEeccC-eEEEeccccCCcchhhhhhhhheeeeeecc----chheeec
Confidence            368899999999998743  4455654432  222222 566677765555221   122356788899    9999875


Q ss_pred             CCCCcccCCCCCeEEECCEEEEEecC---------CCEEEEEECCCCcEEEeecCC--ccccCCCceeee-CCeEEEEEE
Q 045071          256 SLPRLCSLESGRMVQVNGKFYCMNYS---------PFSVLAYDISANAWFNIQAPM--RRFLRSPSLLDS-NGKLILVAA  323 (453)
Q Consensus       256 ~~p~~~~~~~~~~v~~~G~lY~~~~~---------~~~i~~yD~~~~~W~~i~~p~--~~~~~~~~lv~~-~g~L~vv~~  323 (453)
                      .-........+.+|..+..|...++-         -+.|.+||+++-+|.++..+-  |..+..+++.+. +|.++|.|+
T Consensus       171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG  250 (521)
T KOG1230|consen  171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG  250 (521)
T ss_pred             cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence            33222233446677776666655421         157999999999999985533  444555667666 999999999


Q ss_pred             EeccCC-----CCCCcEEEEEeecCC-----CCeEEEeecCHHHHHHhhcccCCCcEEEE-eeCCEEEEEEc-----C--
Q 045071          324 VEKSKL-----NVPKSLRLWSLQACG-----TLWAEIERMPQQLYAQFAEIEAGNGFDTI-GHGEFIVIVIR-----G--  385 (453)
Q Consensus       324 ~~~~~~-----~~~~~i~vw~ld~~~-----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~-~~g~~I~l~~~-----~--  385 (453)
                      ..+...     .....-+.|.|++..     ..|.++.....       ....+.+|.|. +-++.-++.+.     .  
T Consensus       251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~-------kPspRsgfsv~va~n~kal~FGGV~D~eeee  323 (521)
T KOG1230|consen  251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV-------KPSPRSGFSVAVAKNHKALFFGGVCDLEEEE  323 (521)
T ss_pred             hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC-------CCCCCCceeEEEecCCceEEecceecccccc
Confidence            765321     011223689998864     45667654321       01123456543 33333333221     0  


Q ss_pred             -------CCeEEEEECCCCceEEc
Q 045071          386 -------SDKALLFDLCMKSWQWI  402 (453)
Q Consensus       386 -------~~~v~~Yd~~~~~W~~l  402 (453)
                             .+.++.||+..++|...
T Consensus       324 Esl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  324 ESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             hhhhhhhhhhhhheecccchhhHh
Confidence                   46799999999999875

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.81  E-value=1.9e-09  Score=72.36  Aligned_cols=43  Identities=30%  Similarity=0.635  Sum_probs=37.1

Q ss_pred             cCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchhh
Q 045071           51 WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLEL   93 (453)
Q Consensus        51 w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~   93 (453)
                      |..||+|++.+||+.|+..++.+++.|||+|+.++.++.+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~   43 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR   43 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence            6899999999999999999999999999999999988765443

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=98.77  E-value=7.9e-07  Score=90.55  Aligned_cols=205  Identities=12%  Similarity=0.106  Sum_probs=133.9

Q ss_pred             eEEEEcCcccceecCCCCC---CCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCC
Q 045071          182 TLILCNPVTGSLSQLPPTL---RPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLP  258 (453)
Q Consensus       182 ~~~v~NP~T~~w~~LP~~~---~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p  258 (453)
                      +++++|--++.|.....-.   .+|..+.+... +   -+++++|+..... . .......||..+    +.|+......
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~-~---~~l~lfGG~~~~~-~-~~~~l~~~d~~t----~~W~~l~~~~  158 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV-G---DKLYLFGGTDKKY-R-NLNELHSLDLST----RTWSLLSPTG  158 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEE-C---CeEEEEccccCCC-C-ChhheEeccCCC----CcEEEecCcC
Confidence            5999999999998775432   23333322222 2   3888888864211 1 234567888888    9999865322


Q ss_pred             C-cccCCCCCeEEECCEEEEEecC------CCEEEEEECCCCcEEEeec--CCccccCCCceeeeCCeEEEEEEEeccCC
Q 045071          259 R-LCSLESGRMVQVNGKFYCMNYS------PFSVLAYDISANAWFNIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSKL  329 (453)
Q Consensus       259 ~-~~~~~~~~~v~~~G~lY~~~~~------~~~i~~yD~~~~~W~~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~~  329 (453)
                      . ......+.++.++.++|+.++.      .+.+++||+++.+|.++..  +.|..+..+.++..+++++|+++..... 
T Consensus       159 ~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~-  237 (482)
T KOG0379|consen  159 DPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD-  237 (482)
T ss_pred             CCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCC-
Confidence            1 1133446678888999998642      2579999999999999854  3444456778899999999999865211 


Q ss_pred             CCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-------CCeEEEEECCCCceEEc
Q 045071          330 NVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-------SDKALLFDLCMKSWQWI  402 (453)
Q Consensus       330 ~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-------~~~v~~Yd~~~~~W~~l  402 (453)
                        ..-=++|.||..+.+|+++.....     ..  ..+.....+..++.+++.+..       ...++.||+++..|.++
T Consensus       238 --~~l~D~~~ldl~~~~W~~~~~~g~-----~p--~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~  308 (482)
T KOG0379|consen  238 --VYLNDVHILDLSTWEWKLLPTGGD-----LP--SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV  308 (482)
T ss_pred             --ceecceEeeecccceeeeccccCC-----CC--CCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeee
Confidence              111278999988888986543321     00  011233334567778776543       34678999999999998


Q ss_pred             CCCC
Q 045071          403 PRCP  406 (453)
Q Consensus       403 ~~~p  406 (453)
                      ....
T Consensus       309 ~~~~  312 (482)
T KOG0379|consen  309 ESVG  312 (482)
T ss_pred             eccc
Confidence            6554

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=98.64  E-value=2.8e-06  Score=86.52  Aligned_cols=172  Identities=14%  Similarity=0.210  Sum_probs=114.4

Q ss_pred             eEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC-cccCCCCCeEEECCEEEEEecCC------CEEEEEE
Q 045071          217 VDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR-LCSLESGRMVQVNGKFYCMNYSP------FSVLAYD  289 (453)
Q Consensus       217 ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~-~~~~~~~~~v~~~G~lY~~~~~~------~~i~~yD  289 (453)
                      -++++.|+....... ......++|..+    ..|.....-.. .....++..+.++.+||+.++..      ..|..||
T Consensus        71 ~~~~vfGG~~~~~~~-~~~dl~~~d~~~----~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d  145 (482)
T KOG0379|consen   71 NKLYVFGGYGSGDRL-TDLDLYVLDLES----QLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLD  145 (482)
T ss_pred             CEEEEECCCCCCCcc-ccceeEEeecCC----cccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEecc
Confidence            488888876433211 112367778877    88987542111 11233456788899999997653      3899999


Q ss_pred             CCCCcEEEeec--CCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCC
Q 045071          290 ISANAWFNIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAG  367 (453)
Q Consensus       290 ~~~~~W~~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~  367 (453)
                      +.+.+|..+..  ..|..+..+.++..+.+|+++|+.....   ...-++|.||..+.+|+++....+.-       ..+
T Consensus       146 ~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~---~~~ndl~i~d~~~~~W~~~~~~g~~P-------~pR  215 (482)
T KOG0379|consen  146 LSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTG---DSLNDLHIYDLETSTWSELDTQGEAP-------SPR  215 (482)
T ss_pred             CCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcc---cceeeeeeeccccccceecccCCCCC-------CCC
Confidence            99999988743  1234456667888889999999976542   12348899999889999986654311       112


Q ss_pred             CcEEEEeeCCEEEEEEcC------CCeEEEEECCCCceEEcC
Q 045071          368 NGFDTIGHGEFIVIVIRG------SDKALLFDLCMKSWQWIP  403 (453)
Q Consensus       368 ~~~~~~~~g~~I~l~~~~------~~~v~~Yd~~~~~W~~l~  403 (453)
                      ..=.++..++.+++....      ...+..+|+.+.+|..++
T Consensus       216 ~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~  257 (482)
T KOG0379|consen  216 YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP  257 (482)
T ss_pred             CCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc
Confidence            233455567777765432      468999999998888665

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.62  E-value=6.7e-09  Score=70.10  Aligned_cols=45  Identities=31%  Similarity=0.564  Sum_probs=37.7

Q ss_pred             ccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchhhh
Q 045071           50 IWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELY   94 (453)
Q Consensus        50 ~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~~   94 (453)
                      .|.+||+|++.+|+.+|+..++++++.|||+|++++.+..+...+
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            478899999999999999999999999999999999988766543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.50  E-value=4.9e-08  Score=63.34  Aligned_cols=39  Identities=38%  Similarity=0.770  Sum_probs=36.4

Q ss_pred             ChHHHHHHHHhcCChhhhhhhhhccccccccccCccchh
Q 045071           54 LPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLE   92 (453)
Q Consensus        54 LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~   92 (453)
                      ||+|++.+|+.+|+..++.+++.|||+|+.++.++.|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999998877654

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.44  E-value=1.7e-05  Score=75.36  Aligned_cols=147  Identities=15%  Similarity=0.202  Sum_probs=92.8

Q ss_pred             CCCCCcceEEEEEcCCceEEEEEccCCCCcccc-cccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEEC-CEEEE
Q 045071          200 LRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAV-KNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVN-GKFYC  277 (453)
Q Consensus       200 ~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~-~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~-G~lY~  277 (453)
                      |.+|.++.  +.+.+..-.+++.|+........ .......|+.++    +.|+.+.+.....+..++.+|++. |.+|+
T Consensus        64 PspRsn~s--l~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~----~eWkk~~spn~P~pRsshq~va~~s~~l~~  137 (521)
T KOG1230|consen   64 PSPRSNPS--LFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKK----NEWKKVVSPNAPPPRSSHQAVAVPSNILWL  137 (521)
T ss_pred             CCCCCCcc--eeeccCcceeEEecceeecceeEEEeeeeeEEeccc----cceeEeccCCCcCCCccceeEEeccCeEEE
Confidence            44565543  44455434677777753221100 112346677888    999987532111133445666665 77777


Q ss_pred             EecC---C--------CEEEEEECCCCcEEEeecCC-ccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCC
Q 045071          278 MNYS---P--------FSVLAYDISANAWFNIQAPM-RRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGT  345 (453)
Q Consensus       278 ~~~~---~--------~~i~~yD~~~~~W~~i~~p~-~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~  345 (453)
                      .++.   +        ..++.||+.+++|+.+..+- |..+..++++++..+|+++|++-+..-....-=+||.++.++-
T Consensus       138 fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdty  217 (521)
T KOG1230|consen  138 FGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTY  217 (521)
T ss_pred             eccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccce
Confidence            6542   1        36899999999999996642 4456678999999999999998654100001126899998899


Q ss_pred             CeEEEee
Q 045071          346 LWAEIER  352 (453)
Q Consensus       346 ~W~~v~~  352 (453)
                      .|.++..
T Consensus       218 kW~Klep  224 (521)
T KOG1230|consen  218 KWSKLEP  224 (521)
T ss_pred             eeeeccC
Confidence            9999765

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.41  E-value=5.5e-06  Score=80.46  Aligned_cols=232  Identities=16%  Similarity=0.259  Sum_probs=131.2

Q ss_pred             CCCCCeEeccC--CCCC--C-CCeeeeecCceEEEEe-cCCC-CeeEEEEcCcccceecCCCCC--CCCCcceEEEEEcC
Q 045071          144 PHELSWYRISF--ALVP--S-EFSPASSSGGLVCWVS-DHAG-AKTLILCNPVTGSLSQLPPTL--RPRLFPSIGLKVTP  214 (453)
Q Consensus       144 p~~~~w~~l~l--~~lp--~-~~~~~~s~~Gll~~~~-~~~~-~~~~~v~NP~T~~w~~LP~~~--~~r~~~~~~~~~~~  214 (453)
                      +..-+|+++.-  ...|  + +...++-. .|+++.+ +..+ ..+++|||-.|++|.. |...  .|-...+.|++.+ 
T Consensus        14 ~~~~rWrrV~~~tGPvPrpRHGHRAVaik-ELiviFGGGNEGiiDELHvYNTatnqWf~-PavrGDiPpgcAA~Gfvcd-   90 (830)
T KOG4152|consen   14 KNVVRWRRVQQSTGPVPRPRHGHRAVAIK-ELIVIFGGGNEGIIDELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCD-   90 (830)
T ss_pred             hcccceEEEecccCCCCCccccchheeee-eeEEEecCCcccchhhhhhhccccceeec-chhcCCCCCchhhcceEec-
Confidence            34457887652  1222  3 33444444 5555444 3332 3589999999999963 3321  1222334566666 


Q ss_pred             CceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC-----cccCCCCCeEEECCEEEEEecC--------
Q 045071          215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR-----LCSLESGRMVQVNGKFYCMNYS--------  281 (453)
Q Consensus       215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~-----~~~~~~~~~v~~~G~lY~~~~~--------  281 (453)
                       +-||+++|+..  +|+  .++.+.|......  -.|+.+.+-+.     .+..-.+.....+++.|+.++-        
T Consensus        91 -GtrilvFGGMv--EYG--kYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpk  163 (830)
T KOG4152|consen   91 -GTRILVFGGMV--EYG--KYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPK  163 (830)
T ss_pred             -CceEEEEccEe--eec--cccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcc
Confidence             35999998842  222  3456778776622  45666543211     1222224567788999987531        


Q ss_pred             ------CCEEEEEECCCC----cEEEeec--CCccccCCCceeee------CCeEEEEEEEeccCCCCCCcEEEEEeecC
Q 045071          282 ------PFSVLAYDISAN----AWFNIQA--PMRRFLRSPSLLDS------NGKLILVAAVEKSKLNVPKSLRLWSLQAC  343 (453)
Q Consensus       282 ------~~~i~~yD~~~~----~W~~i~~--p~~~~~~~~~lv~~------~g~L~vv~~~~~~~~~~~~~i~vw~ld~~  343 (453)
                            .+.+...++.-+    .|.....  +.|..+..+..|.+      ..++++.|+....+++     ++|.||.+
T Consensus       164 nNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLg-----DLW~Ldl~  238 (830)
T KOG4152|consen  164 NNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLG-----DLWTLDLD  238 (830)
T ss_pred             cccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccccc-----ceeEEecc
Confidence                  124555555532    4754311  22222333333321      3578888887766554     89999999


Q ss_pred             CCCeEEE-----eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-------------------CCeEEEEECCCCce
Q 045071          344 GTLWAEI-----ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-------------------SDKALLFDLCMKSW  399 (453)
Q Consensus       344 ~~~W~~v-----~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-------------------~~~v~~Yd~~~~~W  399 (453)
                      +..|.+.     ..||..+.            .....||.+|+.+..                   ...+.++|+.+.+|
T Consensus       239 Tl~W~kp~~~G~~PlPRSLH------------sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W  306 (830)
T KOG4152|consen  239 TLTWNKPSLSGVAPLPRSLH------------SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAW  306 (830)
T ss_pred             eeecccccccCCCCCCcccc------------cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchhe
Confidence            9999873     34554221            123356777765421                   24678899999999


Q ss_pred             EEc
Q 045071          400 QWI  402 (453)
Q Consensus       400 ~~l  402 (453)
                      +-|
T Consensus       307 ~tl  309 (830)
T KOG4152|consen  307 ETL  309 (830)
T ss_pred             eee
Confidence            875

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=98.30  E-value=1.2e-05  Score=69.73  Aligned_cols=82  Identities=18%  Similarity=0.352  Sum_probs=57.1

Q ss_pred             eEEECCEEEEEecCCC-----EEEEEECCCCcE-EEeecCCccc--cCCCce-eeeCCeEEEEEEEeccCCCCCCcEEEE
Q 045071          268 MVQVNGKFYCMNYSPF-----SVLAYDISANAW-FNIQAPMRRF--LRSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLW  338 (453)
Q Consensus       268 ~v~~~G~lY~~~~~~~-----~i~~yD~~~~~W-~~i~~p~~~~--~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw  338 (453)
                      +|++||.+||+.....     .|++||+.++++ +.++.|....  .....| +..+++|+++.....     ...++||
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~-----~~~~~IW   75 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDE-----TSKIEIW   75 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccC-----CccEEEE
Confidence            4899999999976431     699999999999 7776654332  112344 334789998864221     2358999


Q ss_pred             EeecC---CCCeEEEeecC
Q 045071          339 SLQAC---GTLWAEIERMP  354 (453)
Q Consensus       339 ~ld~~---~~~W~~v~~mp  354 (453)
                      .|++.   ..+|+++-+++
T Consensus        76 vm~~~~~~~~SWtK~~~i~   94 (164)
T PF07734_consen   76 VMKKYGYGKESWTKLFTID   94 (164)
T ss_pred             EEeeeccCcceEEEEEEEe
Confidence            99952   57899976654

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.10  E-value=5.1e-05  Score=70.43  Aligned_cols=43  Identities=21%  Similarity=0.509  Sum_probs=38.9

Q ss_pred             cCCCh----HHHHHHHHhcCChhhhhhhhhccccccccccCccchhh
Q 045071           51 WSKLP----QRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLEL   93 (453)
Q Consensus        51 w~~LP----~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~   93 (453)
                      ...||    +++.++||+.|...+|+.+..|||+|++++.++...+.
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk  121 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK  121 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence            56799    99999999999999999999999999999998876543

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.87  E-value=0.00065  Score=63.93  Aligned_cols=164  Identities=16%  Similarity=0.200  Sum_probs=98.5

Q ss_pred             eeEEEEcCc--ccceecCCCCCCC-CCcceEEEEEcCCceEEEEEccCCCCc--ccccccceeEEEcccCCCCCcccccC
Q 045071          181 KTLILCNPV--TGSLSQLPPTLRP-RLFPSIGLKVTPTAVDVTVAGDDLISP--YAVKNLSSESFHIDAGGFFSLWGTTS  255 (453)
Q Consensus       181 ~~~~v~NP~--T~~w~~LP~~~~~-r~~~~~~~~~~~~~ykvv~~g~~~~~~--~~~~~~~~evyds~~~~~~~~W~~~~  255 (453)
                      ...++.|.-  .+.|.++...+.. |-.+..++. +   .|+++.++.+...  .......++.|++.+    ++|..+.
T Consensus        58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~-~---~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~----nsW~kl~  129 (381)
T COG3055          58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVI-G---GKLYVFGGYGKSVSSSPQVFNDAYRYDPST----NSWHKLD  129 (381)
T ss_pred             ccceehhhhcCCCCceEcccCCCcccccchheee-C---CeEEEeeccccCCCCCceEeeeeEEecCCC----Chhheec
Confidence            356666654  5689999887653 443332333 2   3888887653221  111245678899999    9999875


Q ss_pred             C-CCCcccCCCCCeEEECC-EEEEEecC---------------------------------------CCEEEEEECCCCc
Q 045071          256 S-LPRLCSLESGRMVQVNG-KFYCMNYS---------------------------------------PFSVLAYDISANA  294 (453)
Q Consensus       256 ~-~p~~~~~~~~~~v~~~G-~lY~~~~~---------------------------------------~~~i~~yD~~~~~  294 (453)
                      . .|..  +.....+..++ .+|+.++.                                       ...+++||+.+++
T Consensus       130 t~sP~g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~  207 (381)
T COG3055         130 TRSPTG--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQ  207 (381)
T ss_pred             cccccc--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccch
Confidence            4 3331  22233455555 78876421                                       0268999999999


Q ss_pred             EEEee-cCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHH
Q 045071          295 WFNIQ-APMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQ  356 (453)
Q Consensus       295 W~~i~-~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~  356 (453)
                      |+..- .|.-. .....++--+++|.+|.+.-+..+. +..+....+..+..+|.++..+|..
T Consensus       208 W~~~G~~pf~~-~aGsa~~~~~n~~~lInGEiKpGLR-t~~~k~~~~~~~~~~w~~l~~lp~~  268 (381)
T COG3055         208 WRNLGENPFYG-NAGSAVVIKGNKLTLINGEIKPGLR-TAEVKQADFGGDNLKWLKLSDLPAP  268 (381)
T ss_pred             hhhcCcCcccC-ccCcceeecCCeEEEEcceecCCcc-ccceeEEEeccCceeeeeccCCCCC
Confidence            98774 34321 1222344557779999986655431 2233444444557789998887753

>PF13964 Kelch_6: Kelch motif

Probab=97.80  E-value=5.2e-05  Score=51.37  Aligned_cols=45  Identities=24%  Similarity=0.315  Sum_probs=35.2

Q ss_pred             CCCeeeeecCceEEEEecCCC----CeeEEEEcCcccceecCCCCCCCC
Q 045071          159 SEFSPASSSGGLVCWVSDHAG----AKTLILCNPVTGSLSQLPPTLRPR  203 (453)
Q Consensus       159 ~~~~~~~s~~Gll~~~~~~~~----~~~~~v~NP~T~~w~~LP~~~~~r  203 (453)
                      +....+++.+|-|++.++...    .+.+++|||.|++|..+|+|+.+|
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            334456677888888776543    468999999999999999999876

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.59  E-value=0.0053  Score=60.37  Aligned_cols=231  Identities=16%  Similarity=0.184  Sum_probs=113.2

Q ss_pred             ceeeeCCCCCeEecc-CCCCCCCCe--eeeecCceEEEEecC----CCCeeEEEEcCcccceecCCCC-------CCCCC
Q 045071          139 GYLFDPHELSWYRIS-FALVPSEFS--PASSSGGLVCWVSDH----AGAKTLILCNPVTGSLSQLPPT-------LRPRL  204 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~-l~~lp~~~~--~~~s~~Gll~~~~~~----~~~~~~~v~NP~T~~w~~LP~~-------~~~r~  204 (453)
                      ..+|+...++|.--. -..+|....  -..+.+--+++.++.    ...++++-.-..--+|++|.+-       |.||.
T Consensus        59 LHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRl  138 (830)
T KOG4152|consen   59 LHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRL  138 (830)
T ss_pred             hhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCcc
Confidence            457999999997433 233443221  111222223333321    0112222222222357777542       23454


Q ss_pred             cceEEEEEcCCceEEEEEccC---CCCc-ccccccceeEE--EcccCCCCCcccccC---CCCCcccCCCCCeEEE----
Q 045071          205 FPSIGLKVTPTAVDVTVAGDD---LISP-YAVKNLSSESF--HIDAGGFFSLWGTTS---SLPRLCSLESGRMVQV----  271 (453)
Q Consensus       205 ~~~~~~~~~~~~ykvv~~g~~---~~~~-~~~~~~~~evy--ds~~~~~~~~W~~~~---~~p~~~~~~~~~~v~~----  271 (453)
                      -+.+.+.    +.|+|++|+.   ..++ ..+..+--..|  ....|.-.-.|....   .+|.  ...++.+|..    
T Consensus       139 GHSFsl~----gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~--pRESHTAViY~eKD  212 (830)
T KOG4152|consen  139 GHSFSLV----GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPP--PRESHTAVIYTEKD  212 (830)
T ss_pred             CceeEEe----ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCC--CcccceeEEEEecc
Confidence            4443333    2599999873   1122 11112222333  333322114587632   2332  2333444443    


Q ss_pred             --CCEEEEEecC----CCEEEEEECCCCcEEEeec----CCccccCCCceeeeCCeEEEEEEEec----c-C-------C
Q 045071          272 --NGKFYCMNYS----PFSVLAYDISANAWFNIQA----PMRRFLRSPSLLDSNGKLILVAAVEK----S-K-------L  329 (453)
Q Consensus       272 --~G~lY~~~~~----~~~i~~yD~~~~~W~~i~~----p~~~~~~~~~lv~~~g~L~vv~~~~~----~-~-------~  329 (453)
                        ..++|+.++.    ...++-+|+++..|.+...    |+|+.+.  .....++|.|++|+--.    + .       .
T Consensus       213 s~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLH--sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEW  290 (830)
T KOG4152|consen  213 SKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLH--SATTIGNKMYVFGGWVPLVMDDVKVATHEKEW  290 (830)
T ss_pred             CCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccc--cceeecceeEEecceeeeecccccccccccee
Confidence              2357766542    3578999999999998743    6665443  34567899999887321    1 0       0


Q ss_pred             CCCCcEEEEEeecCCCCeEEEee--cCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071          330 NVPKSLRLWSLQACGTLWAEIER--MPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR  384 (453)
Q Consensus       330 ~~~~~i~vw~ld~~~~~W~~v~~--mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~  384 (453)
                      .-+.++.-|.+|  +..|+.+..  +.+.    -. ..++.+-..++.|+++||...
T Consensus       291 kCTssl~clNld--t~~W~tl~~d~~ed~----ti-PR~RAGHCAvAigtRlYiWSG  340 (830)
T KOG4152|consen  291 KCTSSLACLNLD--TMAWETLLMDTLEDN----TI-PRARAGHCAVAIGTRLYIWSG  340 (830)
T ss_pred             eeccceeeeeec--chheeeeeecccccc----cc-ccccccceeEEeccEEEEEec
Confidence            112244555555  688986421  2111    00 112334455778999999865

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.54  E-value=0.0029  Score=59.64  Aligned_cols=161  Identities=16%  Similarity=0.253  Sum_probs=97.8

Q ss_pred             eEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC----------CEEEEEECCCCcEEEeecCCccccC
Q 045071          238 ESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP----------FSVLAYDISANAWFNIQAPMRRFLR  307 (453)
Q Consensus       238 evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~----------~~i~~yD~~~~~W~~i~~p~~~~~~  307 (453)
                      ..-|.+..+  ..|+.++..|.. .+.....++++|+||+.+...          +.+..||+.+++|.++..-.|....
T Consensus        61 y~ldL~~~~--k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~  137 (381)
T COG3055          61 YVLDLKKPG--KGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLV  137 (381)
T ss_pred             eehhhhcCC--CCceEcccCCCc-ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccc
Confidence            344444433  789999887642 222345688999999986421          4689999999999998665555444


Q ss_pred             CCceeeeCC-eEEEEEEEeccCC-------------------------CC-C----CcEEEEEeecCCCCeEEEeecCHH
Q 045071          308 SPSLLDSNG-KLILVAAVEKSKL-------------------------NV-P----KSLRLWSLQACGTLWAEIERMPQQ  356 (453)
Q Consensus       308 ~~~lv~~~g-~L~vv~~~~~~~~-------------------------~~-~----~~i~vw~ld~~~~~W~~v~~mp~~  356 (453)
                      ....+..++ ++++.+++.+.-.                         +. +    ..-+|+.+++..+.|.-+...|- 
T Consensus       138 G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf-  216 (381)
T COG3055         138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF-  216 (381)
T ss_pred             cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcc-
Confidence            444455666 9999998754210                         00 0    01256777777888877666653 


Q ss_pred             HHHHhhcccCCCcEEEEeeCCEEEEEEcC------CCeEEEEECCC--CceEEcCCCCCcCC
Q 045071          357 LYAQFAEIEAGNGFDTIGHGEFIVIVIRG------SDKALLFDLCM--KSWQWIPRCPYVQA  410 (453)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~g~~I~l~~~~------~~~v~~Yd~~~--~~W~~l~~~p~~~~  410 (453)
                           ...   .+..++..+|.+.+....      ...+..+|+..  -+|..++..|....
T Consensus       217 -----~~~---aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~  270 (381)
T COG3055         217 -----YGN---AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIG  270 (381)
T ss_pred             -----cCc---cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCC
Confidence                 111   122334456755554332      34566666664  57888877765544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=4e-05  Score=70.42  Aligned_cols=42  Identities=29%  Similarity=0.609  Sum_probs=38.3

Q ss_pred             cccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccc
Q 045071           49 RIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSF   90 (453)
Q Consensus        49 ~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F   90 (453)
                      .-|..||||+++.|++.|+.++|.++..|||||+++.++...
T Consensus        96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l  137 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL  137 (419)
T ss_pred             CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence            349999999999999999999999999999999999876554

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.32  E-value=0.00082  Score=44.63  Aligned_cols=44  Identities=11%  Similarity=0.250  Sum_probs=35.3

Q ss_pred             CCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecC
Q 045071          308 SPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMP  354 (453)
Q Consensus       308 ~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp  354 (453)
                      ...++..+++||++||.....   ...-.++.||..+++|+++..||
T Consensus         4 ~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    4 GHAAVVVGNKIYVIGGYDGNN---QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             SEEEEEETTEEEEEEEBESTS---SBEEEEEEEETTTTEEEEEEEES
T ss_pred             cCEEEEECCEEEEEeeecccC---ceeeeEEEEeCCCCEEEEcCCCC
Confidence            456788999999999987621   23447889999999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=97.28  E-value=0.00082  Score=45.38  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             EEEEeeCCEEEEEEcC------CCeEEEEECCCCceEEcCCCCCc
Q 045071          370 FDTIGHGEFIVIVIRG------SDKALLFDLCMKSWQWIPRCPYV  408 (453)
Q Consensus       370 ~~~~~~g~~I~l~~~~------~~~v~~Yd~~~~~W~~l~~~p~~  408 (453)
                      ..++..++.||+.+..      .+.+.+||+++++|+.++++|..
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence            4566788999998653      46899999999999999998854

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.99  E-value=0.0012  Score=44.30  Aligned_cols=45  Identities=18%  Similarity=0.352  Sum_probs=34.3

Q ss_pred             CCceeeeCCeEEEEEEE-eccCCCCCCcEEEEEeecCCCCeEEEeecC
Q 045071          308 SPSLLDSNGKLILVAAV-EKSKLNVPKSLRLWSLQACGTLWAEIERMP  354 (453)
Q Consensus       308 ~~~lv~~~g~L~vv~~~-~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp  354 (453)
                      .+..+..+++|||+|+. ...  .....-++|.||.++.+|+++..||
T Consensus         4 ~hs~~~~~~kiyv~GG~~~~~--~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    4 GHSAVVLDGKIYVFGGYGTDN--GGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             ceEEEEECCEEEEECCcccCC--CCcccceeEEEECCCCEEeecCCCC
Confidence            34667899999999998 211  1234558999999999999988775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.48  E-value=0.0044  Score=41.01  Aligned_cols=38  Identities=18%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             cEEEEeeCCEEEEEEcC------CCeEEEEECCCCceEEcCCCC
Q 045071          369 GFDTIGHGEFIVIVIRG------SDKALLFDLCMKSWQWIPRCP  406 (453)
Q Consensus       369 ~~~~~~~g~~I~l~~~~------~~~v~~Yd~~~~~W~~l~~~p  406 (453)
                      ...++..++.||+.++.      ...+.+||+.+++|+.++++|
T Consensus         4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            45667789999998652      468999999999999998775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=96.19  E-value=0.0092  Score=39.91  Aligned_cols=44  Identities=16%  Similarity=0.360  Sum_probs=25.5

Q ss_pred             Cceeee-CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCH
Q 045071          309 PSLLDS-NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQ  355 (453)
Q Consensus       309 ~~lv~~-~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~  355 (453)
                      +.++.. +++|||+|+.....   ...=++|.+|..+++|+++..||.
T Consensus         5 h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    5 HSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             -EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS--
T ss_pred             EEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCCCC
Confidence            345555 69999999976541   012278999999999999988873

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.84  E-value=1.4  Score=40.10  Aligned_cols=187  Identities=18%  Similarity=0.155  Sum_probs=99.7

Q ss_pred             cCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEccc
Q 045071          167 SGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDA  244 (453)
Q Consensus       167 ~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~  244 (453)
                      .+|.+++...   ...++.+|+.|++  |+.-.  +.+-... . ...+   .+|++...+         .....+|..+
T Consensus        35 ~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~-~~~~---~~v~v~~~~---------~~l~~~d~~t   95 (238)
T PF13360_consen   35 DGGRVYVASG---DGNLYALDAKTGKVLWRFDL--PGPISGA-P-VVDG---GRVYVGTSD---------GSLYALDAKT   95 (238)
T ss_dssp             ETTEEEEEET---TSEEEEEETTTSEEEEEEEC--SSCGGSG-E-EEET---TEEEEEETT---------SEEEEEETTT
T ss_pred             eCCEEEEEcC---CCEEEEEECCCCCEEEEeec--cccccce-e-eecc---cccccccce---------eeeEecccCC
Confidence            7788887643   3489999999887  43322  2111111 1 2222   256655432         1346677777


Q ss_pred             CCCCCcccc-cCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCc--EEEeecCCccccC--------CCceee
Q 045071          245 GGFFSLWGT-TSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANA--WFNIQAPMRRFLR--------SPSLLD  313 (453)
Q Consensus       245 ~~~~~~W~~-~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~--W~~i~~p~~~~~~--------~~~lv~  313 (453)
                      |.  -.|+. ....+...........+.++.+|+.... ..|.++|+++++  |+.- ...+....        ...++.
T Consensus        96 G~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~  171 (238)
T PF13360_consen   96 GK--VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-GKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVI  171 (238)
T ss_dssp             SC--EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-SEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEEC
T ss_pred             cc--eeeeeccccccccccccccCceEecCEEEEEecc-CcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEE
Confidence            66  67883 3322211111112344457788877654 689999999764  6543 23322111        112333


Q ss_pred             eCCeEEEEEEEeccCCCCCCcEEEEEeecCCC--CeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEE
Q 045071          314 SNGKLILVAAVEKSKLNVPKSLRLWSLQACGT--LWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALL  391 (453)
Q Consensus       314 ~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~--~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~  391 (453)
                      .+|.+|+...  +.        .+..+|..++  .|+. . +..            ..-.....++.+|+.. ..+.+.+
T Consensus       172 ~~~~v~~~~~--~g--------~~~~~d~~tg~~~w~~-~-~~~------------~~~~~~~~~~~l~~~~-~~~~l~~  226 (238)
T PF13360_consen  172 SDGRVYVSSG--DG--------RVVAVDLATGEKLWSK-P-ISG------------IYSLPSVDGGTLYVTS-SDGRLYA  226 (238)
T ss_dssp             CTTEEEEECC--TS--------SEEEEETTTTEEEEEE-C-SS-------------ECECEECCCTEEEEEE-TTTEEEE
T ss_pred             ECCEEEEEcC--CC--------eEEEEECCCCCEEEEe-c-CCC------------ccCCceeeCCEEEEEe-CCCEEEE
Confidence            4677776442  11        1344454444  3732 2 322            0111355789999887 5799999


Q ss_pred             EECCCCceEE
Q 045071          392 FDLCMKSWQW  401 (453)
Q Consensus       392 Yd~~~~~W~~  401 (453)
                      +|+++++-.|
T Consensus       227 ~d~~tG~~~W  236 (238)
T PF13360_consen  227 LDLKTGKVVW  236 (238)
T ss_dssp             EETTTTEEEE
T ss_pred             EECCCCCEEe
Confidence            9999987444

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.54  E-value=1.1  Score=43.76  Aligned_cols=258  Identities=20%  Similarity=0.238  Sum_probs=124.9

Q ss_pred             eeeeCCCCCeEeccC-CCCC-CCCeeeeecCceEEEEecCC-CCee--EEEEcCcccceecCCCCCCCCCcceEEEEEcC
Q 045071          140 YLFDPHELSWYRISF-ALVP-SEFSPASSSGGLVCWVSDHA-GAKT--LILCNPVTGSLSQLPPTLRPRLFPSIGLKVTP  214 (453)
Q Consensus       140 ~~fdp~~~~w~~l~l-~~lp-~~~~~~~s~~Gll~~~~~~~-~~~~--~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~  214 (453)
                      +.||..+.++..+.. .... ..+..+...+..||...... ....  .+-+++.+++...+...+.....+ ..+.+++
T Consensus        18 ~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p-~~i~~~~   96 (345)
T PF10282_consen   18 FRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP-CHIAVDP   96 (345)
T ss_dssp             EEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE-EEEEECT
T ss_pred             EEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc-EEEEEec
Confidence            456777777665442 1111 12334455677777766532 2223  345566666666654443211222 2355555


Q ss_pred             CceEEEEEccCCCCcccccccceeEEEcccCCC----CCccccc--CCCC-CcccCCCCCeEEE-CC-EEEEEecCCCEE
Q 045071          215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF----FSLWGTT--SSLP-RLCSLESGRMVQV-NG-KFYCMNYSPFSV  285 (453)
Q Consensus       215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~----~~~W~~~--~~~p-~~~~~~~~~~v~~-~G-~lY~~~~~~~~i  285 (453)
                      +...++++....        -++.+|+......    ...+...  .+.+ +-.....+..++- +| .+|+.....+.|
T Consensus        97 ~g~~l~vany~~--------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   97 DGRFLYVANYGG--------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             TSSEEEEEETTT--------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             CCCEEEEEEccC--------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            555566653211        1335555543100    0111110  0011 0000011222332 34 577666556789


Q ss_pred             EEEECCCCc--EEE---eecCCccccCCC-ceee--eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEee---cC
Q 045071          286 LAYDISANA--WFN---IQAPMRRFLRSP-SLLD--SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIER---MP  354 (453)
Q Consensus       286 ~~yD~~~~~--W~~---i~~p~~~~~~~~-~lv~--~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~---mp  354 (453)
                      ..|+.....  ...   +..|..   ..+ .++-  .+..+|+++.  .     ...+.++.++.....++.+..   +|
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G---~GPRh~~f~pdg~~~Yv~~e--~-----s~~v~v~~~~~~~g~~~~~~~~~~~~  238 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPG---SGPRHLAFSPDGKYAYVVNE--L-----SNTVSVFDYDPSDGSLTEIQTISTLP  238 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTT---SSEEEEEE-TTSSEEEEEET--T-----TTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred             EEEEEeCCCceEEEeeccccccC---CCCcEEEEcCCcCEEEEecC--C-----CCcEEEEeecccCCceeEEEEeeecc
Confidence            999988765  543   222321   122 2322  2346676552  1     246788998866667776544   33


Q ss_pred             HHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECC--CCceEEcCCCCCcCCCCCCCCCCCCCceeEEEEeccc
Q 045071          355 QQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLC--MKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPR  432 (453)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~f~P~  432 (453)
                      ..    +........+.....|.++|+..+..+.|.+|+++  +++.+.+...+..            +...+.+++.|.
T Consensus       239 ~~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~------------G~~Pr~~~~s~~  302 (345)
T PF10282_consen  239 EG----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG------------GKFPRHFAFSPD  302 (345)
T ss_dssp             TT----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES------------SSSEEEEEE-TT
T ss_pred             cc----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC------------CCCccEEEEeCC
Confidence            31    11100111233344688999998888999999984  4577766544421            224667777663

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=95.43  E-value=0.017  Score=56.82  Aligned_cols=138  Identities=13%  Similarity=0.119  Sum_probs=86.1

Q ss_pred             CCCCeEEECC--EEEEEecCC-----CEEEEEECCCCcEEEeecC--CccccCCCceee--eCCeEEEEEEEeccC--CC
Q 045071          264 ESGRMVQVNG--KFYCMNYSP-----FSVLAYDISANAWFNIQAP--MRRFLRSPSLLD--SNGKLILVAAVEKSK--LN  330 (453)
Q Consensus       264 ~~~~~v~~~G--~lY~~~~~~-----~~i~~yD~~~~~W~~i~~p--~~~~~~~~~lv~--~~g~L~vv~~~~~~~--~~  330 (453)
                      ..+++|...+  ++|..++-.     ...+.|+...+.|.++..-  .|..+.++.+|.  ...|||+.|..-...  -.
T Consensus       262 gGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~  341 (723)
T KOG2437|consen  262 GGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNS  341 (723)
T ss_pred             CcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccc
Confidence            3466788776  899876531     2468999999999998542  456667777775  456999988643321  01


Q ss_pred             CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--------CCeEEEEECCCCceEEc
Q 045071          331 VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--------SDKALLFDLCMKSWQWI  402 (453)
Q Consensus       331 ~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--------~~~v~~Yd~~~~~W~~l  402 (453)
                      ...+-++|++|.+++.|.-+ ++...- .+-..........+.+..+.||+.++.        ...+.+||.....|+.+
T Consensus       342 ~s~RsDfW~FDi~~~~W~~l-s~dt~~-dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l  419 (723)
T KOG2437|consen  342 KSLRSDFWRFDIDTNTWMLL-SEDTAA-DGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL  419 (723)
T ss_pred             cccccceEEEecCCceeEEe-cccccc-cCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence            12345899999999999753 332210 000000001223333444558876542        45799999999999876


Q ss_pred             C
Q 045071          403 P  403 (453)
Q Consensus       403 ~  403 (453)
                      .
T Consensus       420 ~  420 (723)
T KOG2437|consen  420 R  420 (723)
T ss_pred             H
Confidence            4

>smart00612 Kelch Kelch domain

Probab=95.37  E-value=0.031  Score=36.52  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=25.9

Q ss_pred             EEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC
Q 045071          218 DVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR  259 (453)
Q Consensus       218 kvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~  259 (453)
                      +||++|+....   .....+++||+.+    +.|+..++|+.
T Consensus         1 ~iyv~GG~~~~---~~~~~v~~yd~~~----~~W~~~~~~~~   35 (47)
T smart00612        1 KIYVVGGFDGG---QRLKSVEVYDPET----NKWTPLPSMPT   35 (47)
T ss_pred             CEEEEeCCCCC---ceeeeEEEECCCC----CeEccCCCCCC
Confidence            47888875321   1245679999999    99999998876

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.33  E-value=0.36  Score=44.36  Aligned_cols=151  Identities=10%  Similarity=0.140  Sum_probs=81.7

Q ss_pred             ceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC---CCEEEEEECCC----CcEEEeecCCccccCC
Q 045071          236 SSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS---PFSVLAYDISA----NAWFNIQAPMRRFLRS  308 (453)
Q Consensus       236 ~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~---~~~i~~yD~~~----~~W~~i~~p~~~~~~~  308 (453)
                      ...+||..+    ++++.+.-..  ..+++...+.-||.+...++.   ...+-.|++.+    ..|.+....+...+--
T Consensus        47 ~s~~yD~~t----n~~rpl~v~t--d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY  120 (243)
T PF07250_consen   47 HSVEYDPNT----NTFRPLTVQT--DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY  120 (243)
T ss_pred             EEEEEecCC----CcEEeccCCC--CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence            357899998    8888764321  134444455567877766543   24577888876    6787764434332222


Q ss_pred             Cceee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCC---CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071          309 PSLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACG---TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR  384 (453)
Q Consensus       309 ~~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~---~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~  384 (453)
                      +.... -+|++++||+...         -.|++-+..   .....+.-+ .........  .-.++..+.-++.||+...
T Consensus       121 pT~~~L~DG~vlIvGG~~~---------~t~E~~P~~~~~~~~~~~~~l-~~~~~~~~~--nlYP~~~llPdG~lFi~an  188 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNN---------PTYEFWPPKGPGPGPVTLPFL-SQTSDTLPN--NLYPFVHLLPDGNLFIFAN  188 (243)
T ss_pred             ccceECCCCCEEEEeCcCC---------CcccccCCccCCCCceeeecc-hhhhccCcc--ccCceEEEcCCCCEEEEEc
Confidence            33332 4899999998653         223333321   111111111 111110111  1123444444555666544


Q ss_pred             CCCeEEEEECCCCce-EEcCCCC
Q 045071          385 GSDKALLFDLCMKSW-QWIPRCP  406 (453)
Q Consensus       385 ~~~~v~~Yd~~~~~W-~~l~~~p  406 (453)
                        .....||..++++ +.+|.+|
T Consensus       189 --~~s~i~d~~~n~v~~~lP~lP  209 (243)
T PF07250_consen  189 --RGSIIYDYKTNTVVRTLPDLP  209 (243)
T ss_pred             --CCcEEEeCCCCeEEeeCCCCC
Confidence              5678899999987 7788877

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.32  E-value=2.4  Score=39.25  Aligned_cols=220  Identities=14%  Similarity=0.103  Sum_probs=121.8

Q ss_pred             eeeCCCCCeEeccCCCCCCCCe-eeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcc-eEEEEEcCCceE
Q 045071          141 LFDPHELSWYRISFALVPSEFS-PASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFP-SIGLKVTPTAVD  218 (453)
Q Consensus       141 ~fdp~~~~w~~l~l~~lp~~~~-~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~-~~~~~~~~~~yk  218 (453)
                      ..||.+.+-...+++.-.+-+. +++-.++..++ ..   ..-+..++|.|.+..+.|-+.. +... .-..++|+.+..
T Consensus        87 hLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit-d~---~~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~~G~l  161 (353)
T COG4257          87 HLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT-DT---GLAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDPWGNL  161 (353)
T ss_pred             ecCCCCCceEEEecCCCCCCceEEECCCCCeeEe-cC---cceeEEecCcccceEEeecccc-cCCCcccceeeCCCccE
Confidence            3688888888777665433333 34444444433 22   1257788999998877765422 1110 001233433222


Q ss_pred             EEEEccCC----CCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCc
Q 045071          219 VTVAGDDL----ISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANA  294 (453)
Q Consensus       219 vv~~g~~~----~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~  294 (453)
                      -+ .+..+    -++   ....+++|..-.|.          -|      ..-.+.-||.+|+.....+.|...|+.+..
T Consensus       162 WF-t~q~G~yGrLdP---a~~~i~vfpaPqG~----------gp------yGi~atpdGsvwyaslagnaiaridp~~~~  221 (353)
T COG4257         162 WF-TGQIGAYGRLDP---ARNVISVFPAPQGG----------GP------YGICATPDGSVWYASLAGNAIARIDPFAGH  221 (353)
T ss_pred             EE-eeccccceecCc---ccCceeeeccCCCC----------CC------cceEECCCCcEEEEeccccceEEcccccCC
Confidence            22 22111    011   11223344322210          01      122345689999887666789999999987


Q ss_pred             EEEeecCCccccCCCce-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEE-E
Q 045071          295 WFNIQAPMRRFLRSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFD-T  372 (453)
Q Consensus       295 W~~i~~p~~~~~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~  372 (453)
                      -++++.|.+.......+ +...|++.+-.-  ..       -.+..+|+...+|.+- .||..         ..+... .
T Consensus       222 aev~p~P~~~~~gsRriwsdpig~~wittw--g~-------g~l~rfdPs~~sW~ey-pLPgs---------~arpys~r  282 (353)
T COG4257         222 AEVVPQPNALKAGSRRIWSDPIGRAWITTW--GT-------GSLHRFDPSVTSWIEY-PLPGS---------KARPYSMR  282 (353)
T ss_pred             cceecCCCcccccccccccCccCcEEEecc--CC-------ceeeEeCcccccceee-eCCCC---------CCCcceee
Confidence            77775554422222223 345677775321  11       1678889988889874 45541         011222 2


Q ss_pred             EeeCCEEEEEEcCCCeEEEEECCCCceEEcCC
Q 045071          373 IGHGEFIVIVIRGSDKALLFDLCMKSWQWIPR  404 (453)
Q Consensus       373 ~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~  404 (453)
                      +-.-++|++..-..+.+..||+++.+.+.+|.
T Consensus       283 VD~~grVW~sea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         283 VDRHGRVWLSEADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             eccCCcEEeeccccCceeecCcccceEEEecC
Confidence            34567888876667899999999999998863

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=95.24  E-value=1.9  Score=44.77  Aligned_cols=45  Identities=29%  Similarity=0.485  Sum_probs=39.8

Q ss_pred             ccccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchh
Q 045071           48 SRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLE   92 (453)
Q Consensus        48 ~~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~   92 (453)
                      ....+.||.++...||..|+.++++.+++||+.|+.++.+.....
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            355778999999999999999999999999999999998766544

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.19  E-value=0.0061  Score=56.61  Aligned_cols=44  Identities=20%  Similarity=0.361  Sum_probs=38.9

Q ss_pred             cCCChHHHHHHHHhcC-----ChhhhhhhhhccccccccccCccchhhh
Q 045071           51 WSKLPQRLLDRVLAFL-----PPPAFFRARAVCKRWYGLLFSNSFLELY   94 (453)
Q Consensus        51 w~~LP~dll~~IL~rL-----p~~~l~r~r~VCK~W~~~i~s~~F~~~~   94 (453)
                      +..||||+|.+||.++     .+.+|.++.+|||.|+-...+|.|.++.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a  155 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA  155 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence            4689999999999776     3689999999999999999999987764

>smart00612 Kelch Kelch domain

Probab=95.17  E-value=0.069  Score=34.80  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=23.7

Q ss_pred             CeeEEEEcCcccceecCCCCCCCCCcce
Q 045071          180 AKTLILCNPVTGSLSQLPPTLRPRLFPS  207 (453)
Q Consensus       180 ~~~~~v~NP~T~~w~~LP~~~~~r~~~~  207 (453)
                      ...+.+|||.+++|..+|+|+.+|..+.
T Consensus        14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~   41 (47)
T smart00612       14 LKSVEVYDPETNKWTPLPSMPTPRSGHG   41 (47)
T ss_pred             eeeEEEECCCCCeEccCCCCCCccccce
Confidence            3468899999999999999998887654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.79  E-value=1.8  Score=39.82  Aligned_cols=194  Identities=16%  Similarity=0.207  Sum_probs=101.5

Q ss_pred             CceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC
Q 045071          168 GGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF  247 (453)
Q Consensus       168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~  247 (453)
                      +|-|++..-.  ...++.++|.+++...+....      ..|+..+....+++++...          ...++|..+   
T Consensus        11 ~g~l~~~D~~--~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~---   69 (246)
T PF08450_consen   11 DGRLYWVDIP--GGRIYRVDPDTGEVEVIDLPG------PNGMAFDRPDGRLYVADSG----------GIAVVDPDT---   69 (246)
T ss_dssp             TTEEEEEETT--TTEEEEEETTTTEEEEEESSS------EEEEEEECTTSEEEEEETT----------CEEEEETTT---
T ss_pred             CCEEEEEEcC--CCEEEEEECCCCeEEEEecCC------CceEEEEccCCEEEEEEcC----------ceEEEecCC---
Confidence            4666665432  347888999988765433222      3466665333566766442          225667777   


Q ss_pred             CCcccccCCCCCc--ccCCCCCeEE-ECCEEEEEecCC--------CEEEEEECCCCcEEEeecCCccccCCC-cee-ee
Q 045071          248 FSLWGTTSSLPRL--CSLESGRMVQ-VNGKFYCMNYSP--------FSVLAYDISANAWFNIQAPMRRFLRSP-SLL-DS  314 (453)
Q Consensus       248 ~~~W~~~~~~p~~--~~~~~~~~v~-~~G~lY~~~~~~--------~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv-~~  314 (453)
                       +.++.+...+..  ......+.++ -+|.+|+.....        ..++.+|+. ++...+...+    ..+ .|+ .-
T Consensus        70 -g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~----~~pNGi~~s~  143 (246)
T PF08450_consen   70 -GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL----GFPNGIAFSP  143 (246)
T ss_dssp             -TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE----SSEEEEEEET
T ss_pred             -CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc----ccccceEECC
Confidence             777765443210  0111122232 368899875421        469999999 6655542221    111 232 34


Q ss_pred             CCe-EEEEEEEeccCCCCCCcEEEEEeecC--CCCeEEE---eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCe
Q 045071          315 NGK-LILVAAVEKSKLNVPKSLRLWSLQAC--GTLWAEI---ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDK  388 (453)
Q Consensus       315 ~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~~v---~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~  388 (453)
                      +|+ ||++.. ..      .  +||+++..  ...+...   ..++...    ..   .-++ ++...+.||+.....++
T Consensus       144 dg~~lyv~ds-~~------~--~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~---pDG~-~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  144 DGKTLYVADS-FN------G--RIWRFDLDADGGELSNRRVFIDFPGGP----GY---PDGL-AVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             TSSEEEEEET-TT------T--EEEEEEEETTTCCEEEEEEEEE-SSSS----CE---EEEE-EEBTTS-EEEEEETTTE
T ss_pred             cchheeeccc-cc------c--eeEEEeccccccceeeeeeEEEcCCCC----cC---CCcc-eEcCCCCEEEEEcCCCE
Confidence            555 555332 11      1  57776654  3445432   2333210    00   0122 23346679998777899


Q ss_pred             EEEEECCCCceEEcCCCC
Q 045071          389 ALLFDLCMKSWQWIPRCP  406 (453)
Q Consensus       389 v~~Yd~~~~~W~~l~~~p  406 (453)
                      |.+||++.+....++ +|
T Consensus       207 I~~~~p~G~~~~~i~-~p  223 (246)
T PF08450_consen  207 IVVFDPDGKLLREIE-LP  223 (246)
T ss_dssp             EEEEETTSCEEEEEE--S
T ss_pred             EEEECCCccEEEEEc-CC
Confidence            999999966666664 44

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=94.79  E-value=0.8  Score=44.71  Aligned_cols=132  Identities=14%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             ECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCC---CCcEEEEEeec-----
Q 045071          271 VNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNV---PKSLRLWSLQA-----  342 (453)
Q Consensus       271 ~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~---~~~i~vw~ld~-----  342 (453)
                      .+.+|.++... ...+.||.++..-...+. +......+..+..+|+||+...........   ...+++..++.     
T Consensus        75 ~gskIv~~d~~-~~t~vyDt~t~av~~~P~-l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~  152 (342)
T PF07893_consen   75 HGSKIVAVDQS-GRTLVYDTDTRAVATGPR-LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDP  152 (342)
T ss_pred             cCCeEEEEcCC-CCeEEEECCCCeEeccCC-CCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccc
Confidence            46777777665 569999999988764422 222233444566799999988754321100   01566665542     


Q ss_pred             -CCC--CeEEEeecCHHHHHHhhcccC--CCcEEEEeeCCEEEEEEcC-CCeEEEEECCCCceEEcCC--CCCc
Q 045071          343 -CGT--LWAEIERMPQQLYAQFAEIEA--GNGFDTIGHGEFIVIVIRG-SDKALLFDLCMKSWQWIPR--CPYV  408 (453)
Q Consensus       343 -~~~--~W~~v~~mp~~~~~~~~~~~~--~~~~~~~~~g~~I~l~~~~-~~~v~~Yd~~~~~W~~l~~--~p~~  408 (453)
                       ...  .|..+.. |+  |........  ...+.++ .|..|+++..+ ....+.||.++.+|+++..  +|+.
T Consensus       153 ~~~~~w~W~~LP~-PP--f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF~  222 (342)
T PF07893_consen  153 SPEESWSWRSLPP-PP--FVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPFH  222 (342)
T ss_pred             cCCCcceEEcCCC-CC--ccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeeccceecCcC
Confidence             233  4554333 22  211111000  1123333 48899997553 2368999999999999865  5654

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=94.62  E-value=0.089  Score=35.09  Aligned_cols=28  Identities=11%  Similarity=0.075  Sum_probs=23.9

Q ss_pred             eeEEEEcCcccceecCCCCCCCCCcceE
Q 045071          181 KTLILCNPVTGSLSQLPPTLRPRLFPSI  208 (453)
Q Consensus       181 ~~~~v~NP~T~~w~~LP~~~~~r~~~~~  208 (453)
                      +.++++|+.+++|++++.+|.+|..+.+
T Consensus        19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~   46 (49)
T PF13415_consen   19 NDVWVFDLDTNTWTRIGDLPPPRSGHTA   46 (49)
T ss_pred             cCEEEEECCCCEEEECCCCCCCccceEE
Confidence            4789999999999999999888876543

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=94.58  E-value=0.081  Score=35.22  Aligned_cols=31  Identities=19%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             CCEEEEEEcC------CCeEEEEECCCCceEEcCCCC
Q 045071          376 GEFIVIVIRG------SDKALLFDLCMKSWQWIPRCP  406 (453)
Q Consensus       376 g~~I~l~~~~------~~~v~~Yd~~~~~W~~l~~~p  406 (453)
                      ++.||+.+..      .+.+.+||+++++|++++.+|
T Consensus        12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            4778776532      468999999999999998776

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.24  E-value=0.76  Score=42.24  Aligned_cols=142  Identities=14%  Similarity=0.143  Sum_probs=80.7

Q ss_pred             ceeeeCCCCCeEeccCCCCCCCCeee---eecCceEEEEecC-CCCeeEEEEcCcc----cceecCCC-CCCCCCcceEE
Q 045071          139 GYLFDPHELSWYRISFALVPSEFSPA---SSSGGLVCWVSDH-AGAKTLILCNPVT----GSLSQLPP-TLRPRLFPSIG  209 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l~~lp~~~~~~---~s~~Gll~~~~~~-~~~~~~~v~NP~T----~~w~~LP~-~~~~r~~~~~~  209 (453)
                      ...||+.++++..+...   .+..|.   --.+|-++..++. .+.+.+.+++|.+    ..|.+.+. |..+|.++.+.
T Consensus        48 s~~yD~~tn~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~  124 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT  124 (243)
T ss_pred             EEEEecCCCcEEeccCC---CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence            45799999999887643   121111   1125655555543 3345677888876    67998874 88899998765


Q ss_pred             EEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC-CCcccccCCCC--CcccCCCCCeEEECCEEEEEecCCCEEE
Q 045071          210 LKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF-FSLWGTTSSLP--RLCSLESGRMVQVNGKFYCMNYSPFSVL  286 (453)
Q Consensus       210 ~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~-~~~W~~~~~~p--~~~~~~~~~~v~~~G~lY~~~~~~~~i~  286 (453)
                      ...|   -+|+++||...       .+.|.|....... ...|..+....  ...++....-+.-+|+|++....  .-.
T Consensus       125 ~L~D---G~vlIvGG~~~-------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~  192 (243)
T PF07250_consen  125 TLPD---GRVLIVGGSNN-------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSI  192 (243)
T ss_pred             ECCC---CCEEEEeCcCC-------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcE
Confidence            5444   37888888642       2235444322110 01222222111  01122222234458999888774  456


Q ss_pred             EEECCCCcE
Q 045071          287 AYDISANAW  295 (453)
Q Consensus       287 ~yD~~~~~W  295 (453)
                      .||..++++
T Consensus       193 i~d~~~n~v  201 (243)
T PF07250_consen  193 IYDYKTNTV  201 (243)
T ss_pred             EEeCCCCeE
Confidence            779999877

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=94.19  E-value=1.1  Score=40.85  Aligned_cols=119  Identities=15%  Similarity=0.241  Sum_probs=63.9

Q ss_pred             EECCEEEEEecCCCEEEEEECCCCcEEEeecCCcc-c-cCC-CceeeeC-----CeEEEEEEEeccCCCCCCcEEEEEee
Q 045071          270 QVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRR-F-LRS-PSLLDSN-----GKLILVAAVEKSKLNVPKSLRLWSLQ  341 (453)
Q Consensus       270 ~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~-~-~~~-~~lv~~~-----g~L~vv~~~~~~~~~~~~~i~vw~ld  341 (453)
                      .|||.+ |+... ..+.++||.|++|..++.|... . ... ......+     =|+..+.....+.  ....++||.+.
T Consensus         3 sCnGLl-c~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~--~~~~~~Vys~~   78 (230)
T TIGR01640         3 PCDGLI-CFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR--NQSEHQVYTLG   78 (230)
T ss_pred             ccceEE-EEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC--CCccEEEEEeC
Confidence            488988 55544 5799999999999988544321 0 011 0111111     1333332211111  12355677665


Q ss_pred             cCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC----C-CeEEEEECCCCceEE-cC
Q 045071          342 ACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG----S-DKALLFDLCMKSWQW-IP  403 (453)
Q Consensus       342 ~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~----~-~~v~~Yd~~~~~W~~-l~  403 (453)
                        +++|+++...+....      .. .. .+. .++.+|.....    . ..++.||+++++|+. +|
T Consensus        79 --~~~Wr~~~~~~~~~~------~~-~~-~v~-~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~  135 (230)
T TIGR01640        79 --SNSWRTIECSPPHHP------LK-SR-GVC-INGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP  135 (230)
T ss_pred             --CCCccccccCCCCcc------cc-CC-eEE-ECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee
Confidence              679998874433110      01 11 222 35656655432    1 269999999999994 64

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=94.05  E-value=0.16  Score=33.88  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=26.9

Q ss_pred             eEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCC
Q 045071          217 VDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLP  258 (453)
Q Consensus       217 ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p  258 (453)
                      .|||++|+.............++||.++    ++|+.+..+|
T Consensus        12 ~kiyv~GG~~~~~~~~~~~~v~~~d~~t----~~W~~~~~~g   49 (49)
T PF07646_consen   12 GKIYVFGGYGTDNGGSSSNDVWVFDTET----NQWTELSPMG   49 (49)
T ss_pred             CEEEEECCcccCCCCcccceeEEEECCC----CEEeecCCCC
Confidence            4999999861111122346779999999    9999987664

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=93.96  E-value=0.13  Score=34.32  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             CCeEEEEECCCCceEEcCCCCCcC
Q 045071          386 SDKALLFDLCMKSWQWIPRCPYVQ  409 (453)
Q Consensus       386 ~~~v~~Yd~~~~~W~~l~~~p~~~  409 (453)
                      .+.+++||+.+++|+.++.+|..+
T Consensus        18 ~nd~~~~~~~~~~W~~~~~~P~~R   41 (49)
T PF13415_consen   18 LNDVWVFDLDTNTWTRIGDLPPPR   41 (49)
T ss_pred             ecCEEEEECCCCEEEECCCCCCCc
Confidence            468999999999999998877654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.88  E-value=7.5  Score=38.66  Aligned_cols=103  Identities=17%  Similarity=0.339  Sum_probs=62.0

Q ss_pred             CeEEECCEEEEEecCCCEEEEEECCCCc--EEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCC
Q 045071          267 RMVQVNGKFYCMNYSPFSVLAYDISANA--WFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACG  344 (453)
Q Consensus       267 ~~v~~~G~lY~~~~~~~~i~~yD~~~~~--W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~  344 (453)
                      .+++.+|.+|+.... ..+.++|+.+++  |+.-   ...   ...++..+|+||++....          +++.+|..+
T Consensus       251 sP~v~~~~vy~~~~~-g~l~ald~~tG~~~W~~~---~~~---~~~~~~~~~~vy~~~~~g----------~l~ald~~t  313 (394)
T PRK11138        251 TPVVVGGVVYALAYN-GNLVALDLRSGQIVWKRE---YGS---VNDFAVDGGRIYLVDQND----------RVYALDTRG  313 (394)
T ss_pred             CcEEECCEEEEEEcC-CeEEEEECCCCCEEEeec---CCC---ccCcEEECCEEEEEcCCC----------eEEEEECCC
Confidence            457789999988765 689999999864  7642   111   113456788998865311          566666543


Q ss_pred             --CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          345 --TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       345 --~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                        ..|+.- .+....   .       . .-+..++.||+... .+.+.++|..+.+-
T Consensus       314 G~~~W~~~-~~~~~~---~-------~-sp~v~~g~l~v~~~-~G~l~~ld~~tG~~  357 (394)
T PRK11138        314 GVELWSQS-DLLHRL---L-------T-APVLYNGYLVVGDS-EGYLHWINREDGRF  357 (394)
T ss_pred             CcEEEccc-ccCCCc---c-------c-CCEEECCEEEEEeC-CCEEEEEECCCCCE
Confidence              347531 111100   0       0 11224788888643 57788899988763

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.63  E-value=8.3  Score=38.34  Aligned_cols=186  Identities=16%  Similarity=0.098  Sum_probs=100.4

Q ss_pred             eecCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEc
Q 045071          165 SSSGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHI  242 (453)
Q Consensus       165 ~s~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds  242 (453)
                      +..+|.|++...   ...++.+|+.|++  |+.--+ ......+.   ..+   -+|++...+         -....+|.
T Consensus       117 ~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~-~~~~ssP~---v~~---~~v~v~~~~---------g~l~ald~  177 (394)
T PRK11138        117 TVAGGKVYIGSE---KGQVYALNAEDGEVAWQTKVA-GEALSRPV---VSD---GLVLVHTSN---------GMLQALNE  177 (394)
T ss_pred             EEECCEEEEEcC---CCEEEEEECCCCCCcccccCC-CceecCCE---EEC---CEEEEECCC---------CEEEEEEc
Confidence            445677776543   2368889999886  643211 11111111   112   255554332         13466787


Q ss_pred             ccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCC--cEEEe-ecCCccc----c--CCCceee
Q 045071          243 DAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNI-QAPMRRF----L--RSPSLLD  313 (453)
Q Consensus       243 ~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i-~~p~~~~----~--~~~~lv~  313 (453)
                      ++|.  -.|+.-...+.........+++.+|.+|+.... ..+.++|..++  .|+.- ..|....    .  ....-+.
T Consensus       178 ~tG~--~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~-g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v  254 (394)
T PRK11138        178 SDGA--VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN-GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV  254 (394)
T ss_pred             cCCC--EeeeecCCCCcccccCCCCCEEECCEEEEEcCC-CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE
Confidence            7765  678875433211111113456778888886654 68999999986  47542 1121100    0  0112234


Q ss_pred             eCCeEEEEEEEeccCCCCCCcEEEEEeecC--CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEE
Q 045071          314 SNGKLILVAAVEKSKLNVPKSLRLWSLQAC--GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALL  391 (453)
Q Consensus       314 ~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~  391 (453)
                      .+|.||+++.. .         .++.+|..  ...|+.-  ...             ....+..++.||+... .+.+++
T Consensus       255 ~~~~vy~~~~~-g---------~l~ald~~tG~~~W~~~--~~~-------------~~~~~~~~~~vy~~~~-~g~l~a  308 (394)
T PRK11138        255 VGGVVYALAYN-G---------NLVALDLRSGQIVWKRE--YGS-------------VNDFAVDGGRIYLVDQ-NDRVYA  308 (394)
T ss_pred             ECCEEEEEEcC-C---------eEEEEECCCCCEEEeec--CCC-------------ccCcEEECCEEEEEcC-CCeEEE
Confidence            57888875531 1         56677764  3457641  111             0012345888998653 578999


Q ss_pred             EECCCCc
Q 045071          392 FDLCMKS  398 (453)
Q Consensus       392 Yd~~~~~  398 (453)
                      +|.++.+
T Consensus       309 ld~~tG~  315 (394)
T PRK11138        309 LDTRGGV  315 (394)
T ss_pred             EECCCCc
Confidence            9998875

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=93.16  E-value=1.6  Score=42.61  Aligned_cols=129  Identities=12%  Similarity=0.122  Sum_probs=71.1

Q ss_pred             eeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccc--cccceeEE
Q 045071          163 PASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAV--KNLSSESF  240 (453)
Q Consensus       163 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~--~~~~~evy  240 (453)
                      +.+..+..|+.....   ....|||+.|+.-..+|.+..+...+ +.+.++   -+||+...........  .....|++
T Consensus        71 F~al~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~pk~~p-isv~VG---~~LY~m~~~~~~~~~~~~~~~~FE~l  143 (342)
T PF07893_consen   71 FFALHGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSPKRCP-ISVSVG---DKLYAMDRSPFPEPAGRPDFPCFEAL  143 (342)
T ss_pred             EEEecCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCCCcce-EEEEeC---CeEEEeeccCccccccCccceeEEEe
Confidence            344445555554332   35899999999999999988776665 444443   2677765432111000  00044554


Q ss_pred             Ecc------cCCCCCcccccCCCCCcccCC-----CCCeEEECCEEEEEecCCC--EEEEEECCCCcEEEe
Q 045071          241 HID------AGGFFSLWGTTSSLPRLCSLE-----SGRMVQVNGKFYCMNYSPF--SVLAYDISANAWFNI  298 (453)
Q Consensus       241 ds~------~~~~~~~W~~~~~~p~~~~~~-----~~~~v~~~G~lY~~~~~~~--~i~~yD~~~~~W~~i  298 (453)
                      ...      .......|+.+++.|......     -..-++++|.-.|++....  +-.+||.++.+|++.
T Consensus       144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH  214 (342)
T ss_pred             ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence            221      011115788877655322111     0112334665445533323  789999999999987

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=92.91  E-value=0.29  Score=48.53  Aligned_cols=153  Identities=15%  Similarity=0.197  Sum_probs=89.1

Q ss_pred             EcCcccceecCCCCCC--------CCCcceEEEEEcCCceEEEEEcc-CCCCcccccccceeEEEcccCCCCCcccccCC
Q 045071          186 CNPVTGSLSQLPPTLR--------PRLFPSIGLKVTPTAVDVTVAGD-DLISPYAVKNLSSESFHIDAGGFFSLWGTTSS  256 (453)
Q Consensus       186 ~NP~T~~w~~LP~~~~--------~r~~~~~~~~~~~~~ykvv~~g~-~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~  256 (453)
                      --|.+-.|.++|+...        +..+...-|+.++.+.-||+-|| ++..+    ......|..+.    +.|..+..
T Consensus       234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~----l~DFW~Y~v~e----~~W~~iN~  305 (723)
T KOG2437|consen  234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD----LADFWAYSVKE----NQWTCINR  305 (723)
T ss_pred             cccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh----HHHHHhhcCCc----ceeEEeec
Confidence            3567888988887541        11122334666665556777665 32221    23457788887    89998643


Q ss_pred             ---CCCcccCCCCCeEEECC--EEEEEecC-----------CCEEEEEECCCCcEEEeecCC-----ccccCCCceeeeC
Q 045071          257 ---LPRLCSLESGRMVQVNG--KFYCMNYS-----------PFSVLAYDISANAWFNIQAPM-----RRFLRSPSLLDSN  315 (453)
Q Consensus       257 ---~p~~~~~~~~~~v~~~G--~lY~~~~~-----------~~~i~~yD~~~~~W~~i~~p~-----~~~~~~~~lv~~~  315 (453)
                         .|..  ...+.+|..-.  ++|.++..           +..++.||..++.|..+....     |.-...+++++.+
T Consensus       306 ~t~~PG~--RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~  383 (723)
T KOG2437|consen  306 DTEGPGA--RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDS  383 (723)
T ss_pred             CCCCCcc--hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEec
Confidence               3321  12244555444  78877521           247999999999998874422     2222345666655


Q ss_pred             Ce--EEEEEEEeccCCCCCCcEEEEEeecCCCCeEE
Q 045071          316 GK--LILVAAVEKSKLNVPKSLRLWSLQACGTLWAE  349 (453)
Q Consensus       316 g~--L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~  349 (453)
                      .+  |||.||..-.. +...-=.+|.++.....|+.
T Consensus       384 ~k~~iyVfGGr~~~~-~e~~f~GLYaf~~~~~~w~~  418 (723)
T KOG2437|consen  384 EKHMIYVFGGRILTC-NEPQFSGLYAFNCQCQTWKL  418 (723)
T ss_pred             CcceEEEecCeeccC-CCccccceEEEecCCccHHH
Confidence            55  99999864221 00111256777776777863

>smart00284 OLF Olfactomedin-like domains

Probab=92.57  E-value=5.5  Score=36.85  Aligned_cols=142  Identities=13%  Similarity=0.204  Sum_probs=86.4

Q ss_pred             CCCCCeEEECCEEEEEecCCCEEEEEECCCCcEEEee-cCCcc----------ccCCCceeeeCCeEEEEEEEeccCCCC
Q 045071          263 LESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQ-APMRR----------FLRSPSLLDSNGKLILVAAVEKSKLNV  331 (453)
Q Consensus       263 ~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~-~p~~~----------~~~~~~lv~~~g~L~vv~~~~~~~~~~  331 (453)
                      +.....|+.+|.+|+.......|+.||+.++.-.... .|...          ......+++.++-|.+|-..+++    
T Consensus        74 ~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~----  149 (255)
T smart00284       74 GQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN----  149 (255)
T ss_pred             cccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC----
Confidence            4445568999999998766678999999998764322 33221          11224567778888887765443    


Q ss_pred             CCcEEEEEeecCC----CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc-C---CCeEEEEECCCCceEEcC
Q 045071          332 PKSLRLWSLQACG----TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR-G---SDKALLFDLCMKSWQWIP  403 (453)
Q Consensus       332 ~~~i~vw~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~-~---~~~v~~Yd~~~~~W~~l~  403 (453)
                      ...|.|=+||+.+    ..|..  ..+..-        ....|..   -+.+|+... .   ..-..+||..+.+-. .+
T Consensus       150 ~g~ivvSkLnp~tL~ve~tW~T--~~~k~s--------a~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~-~~  215 (255)
T smart00284      150 AGKIVISKLNPATLTIENTWIT--TYNKRS--------ASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEG-HL  215 (255)
T ss_pred             CCCEEEEeeCcccceEEEEEEc--CCCccc--------ccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccc-ee
Confidence            1356777888753    34543  333311        1123332   245776642 1   334688999988743 34


Q ss_pred             CCCCcCCCCCCCCCCCCCceeEEEEeccc
Q 045071          404 RCPYVQANNCGGNYGDGEGELHGFAYEPR  432 (453)
Q Consensus       404 ~~p~~~~~~~~~~~~~~~~~~~~~~f~P~  432 (453)
                      .+|+...          -.....+.|.|+
T Consensus       216 ~i~f~n~----------y~~~s~l~YNP~  234 (255)
T smart00284      216 DIPFENM----------YEYISMLDYNPN  234 (255)
T ss_pred             eeeeccc----------cccceeceeCCC
Confidence            5776544          236778999997

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.12  E-value=12  Score=36.38  Aligned_cols=171  Identities=13%  Similarity=0.174  Sum_probs=90.6

Q ss_pred             EEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccC--CCCCcccCCCCCeEEE-C-CEEEEEecCCC
Q 045071          208 IGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTS--SLPRLCSLESGRMVQV-N-GKFYCMNYSPF  283 (453)
Q Consensus       208 ~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~--~~p~~~~~~~~~~v~~-~-G~lY~~~~~~~  283 (453)
                      ..+..+++.-.+++..- +       ...+.+|+.+...  .......  .++.  .......++. + ..+|++.....
T Consensus       147 H~v~~~pdg~~v~v~dl-G-------~D~v~~~~~~~~~--~~l~~~~~~~~~~--G~GPRh~~f~pdg~~~Yv~~e~s~  214 (345)
T PF10282_consen  147 HQVVFSPDGRFVYVPDL-G-------ADRVYVYDIDDDT--GKLTPVDSIKVPP--GSGPRHLAFSPDGKYAYVVNELSN  214 (345)
T ss_dssp             EEEEE-TTSSEEEEEET-T-------TTEEEEEEE-TTS---TEEEEEEEECST--TSSEEEEEE-TTSSEEEEEETTTT
T ss_pred             eeEEECCCCCEEEEEec-C-------CCEEEEEEEeCCC--ceEEEeecccccc--CCCCcEEEEcCCcCEEEEecCCCC
Confidence            34556665445555432 1       1245777776621  2243321  1221  1111234554 3 36999988778


Q ss_pred             EEEEEECC--CCcEEEeec--CCcccc----CCCceeee-CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecC
Q 045071          284 SVLAYDIS--ANAWFNIQA--PMRRFL----RSPSLLDS-NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMP  354 (453)
Q Consensus       284 ~i~~yD~~--~~~W~~i~~--p~~~~~----~~~~lv~~-~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp  354 (453)
                      .|.+|+..  ++.++.+..  ..|...    ....++.. +|+.+.|....      ...|.+++++..++..+.+..++
T Consensus       215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~  288 (345)
T PF10282_consen  215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVP  288 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEE
T ss_pred             cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEe
Confidence            88888777  666665532  122111    11123332 45543334222      35789999987777777776654


Q ss_pred             HHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEEC--CCCceEEcC
Q 045071          355 QQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDL--CMKSWQWIP  403 (453)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~--~~~~W~~l~  403 (453)
                      ..      . ...+.+.....|+.+|+.+...+.|.+|++  +++++..+.
T Consensus       289 ~~------G-~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  289 TG------G-KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             ES------S-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CC------C-CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence            31      0 001234444578999998877888998865  577787664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=90.65  E-value=14  Score=34.23  Aligned_cols=142  Identities=17%  Similarity=0.277  Sum_probs=87.7

Q ss_pred             CCCCCeEEECCEEEEEecCCCEEEEEECCCCcEE-EeecCCcccc----------CCCceeeeCCeEEEEEEEeccCCCC
Q 045071          263 LESGRMVQVNGKFYCMNYSPFSVLAYDISANAWF-NIQAPMRRFL----------RSPSLLDSNGKLILVAAVEKSKLNV  331 (453)
Q Consensus       263 ~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~-~i~~p~~~~~----------~~~~lv~~~g~L~vv~~~~~~~~~~  331 (453)
                      +.+...|+.+|.+|.-......|+.||+.++.-. ....|.....          ....+++.+.-|.+|-...++.   
T Consensus        69 ~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~---  145 (250)
T PF02191_consen   69 WQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN---  145 (250)
T ss_pred             eccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC---
Confidence            3445568899999998877789999999998766 4444433211          1234666778888887755432   


Q ss_pred             CCcEEEEEeecCC----CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC----CCeEEEEECCCCceEEcC
Q 045071          332 PKSLRLWSLQACG----TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG----SDKALLFDLCMKSWQWIP  403 (453)
Q Consensus       332 ~~~i~vw~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~----~~~v~~Yd~~~~~W~~l~  403 (453)
                       ..+.|=++|+.+    ..|..  ..+..-.        ...|.+   -+.+|.....    ..-..+||..+++-.. +
T Consensus       146 -g~ivvskld~~tL~v~~tw~T--~~~k~~~--------~naFmv---CGvLY~~~s~~~~~~~I~yafDt~t~~~~~-~  210 (250)
T PF02191_consen  146 -GNIVVSKLDPETLSVEQTWNT--SYPKRSA--------GNAFMV---CGVLYATDSYDTRDTEIFYAFDTYTGKEED-V  210 (250)
T ss_pred             -CcEEEEeeCcccCceEEEEEe--ccCchhh--------cceeeE---eeEEEEEEECCCCCcEEEEEEECCCCceec-e
Confidence             246777788753    34642  3433211        122332   2446665432    2345889999887653 4


Q ss_pred             CCCCcCCCCCCCCCCCCCceeEEEEeccc
Q 045071          404 RCPYVQANNCGGNYGDGEGELHGFAYEPR  432 (453)
Q Consensus       404 ~~p~~~~~~~~~~~~~~~~~~~~~~f~P~  432 (453)
                      .+++...          ......+.|.|+
T Consensus       211 ~i~f~~~----------~~~~~~l~YNP~  229 (250)
T PF02191_consen  211 SIPFPNP----------YGNISMLSYNPR  229 (250)
T ss_pred             eeeeccc----------cCceEeeeECCC
Confidence            5666543          235778999997

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.30  E-value=15  Score=34.28  Aligned_cols=124  Identities=13%  Similarity=0.163  Sum_probs=69.9

Q ss_pred             CeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEE
Q 045071          161 FSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF  240 (453)
Q Consensus       161 ~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evy  240 (453)
                      .-+++.-+|-|.+..-.  .+-+...||++..-.++|.+.....-. =.+-.++- -++-.- .-       ..-+...|
T Consensus       192 yGi~atpdGsvwyasla--gnaiaridp~~~~aev~p~P~~~~~gs-Rriwsdpi-g~~wit-tw-------g~g~l~rf  259 (353)
T COG4257         192 YGICATPDGSVWYASLA--GNAIARIDPFAGHAEVVPQPNALKAGS-RRIWSDPI-GRAWIT-TW-------GTGSLHRF  259 (353)
T ss_pred             cceEECCCCcEEEEecc--ccceEEcccccCCcceecCCCcccccc-cccccCcc-CcEEEe-cc-------CCceeeEe
Confidence            34667777888775321  235778999999777777654311100 01222221 111111 10       12345788


Q ss_pred             EcccCCCCCcccccCCCCCcccCCCCCeEEEC--CEEEEEecCCCEEEEEECCCCcEEEeecCCc
Q 045071          241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVN--GKFYCMNYSPFSVLAYDISANAWFNIQAPMR  303 (453)
Q Consensus       241 ds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~--G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~  303 (453)
                      ++..    .+|.+.. +|..-. . ....++|  |.+..-....+.|..||+++.++++++.|.+
T Consensus       260 dPs~----~sW~eyp-LPgs~a-r-pys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         260 DPSV----TSWIEYP-LPGSKA-R-PYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             Cccc----ccceeee-CCCCCC-C-cceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC
Confidence            8888    7898753 332111 1 2234554  5666555556789999999999999866654

>PLN02772 guanylate kinase

Probab=87.50  E-value=3.5  Score=40.63  Aligned_cols=71  Identities=14%  Similarity=0.234  Sum_probs=46.4

Q ss_pred             CCeEEECCEEEEEecCC------CEEEEEECCCCcEEEeec--CCccccCCCce-eeeCCeEEEEEEEeccCCCCCCcEE
Q 045071          266 GRMVQVNGKFYCMNYSP------FSVLAYDISANAWFNIQA--PMRRFLRSPSL-LDSNGKLILVAAVEKSKLNVPKSLR  336 (453)
Q Consensus       266 ~~~v~~~G~lY~~~~~~------~~i~~yD~~~~~W~~i~~--p~~~~~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~  336 (453)
                      ..++.+++++|++++..      ..+.+||..+.+|.....  +.|..+..+.. +.-+++|+++......      .-.
T Consensus        28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~------~~~  101 (398)
T PLN02772         28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP------DDS  101 (398)
T ss_pred             ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC------ccc
Confidence            45788999999997531      368999999999987532  23332333333 4458999998853321      126


Q ss_pred             EEEeec
Q 045071          337 LWSLQA  342 (453)
Q Consensus       337 vw~ld~  342 (453)
                      +|-|+-
T Consensus       102 ~w~l~~  107 (398)
T PLN02772        102 IWFLEV  107 (398)
T ss_pred             eEEEEc
Confidence            777664

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.73  E-value=27  Score=32.50  Aligned_cols=174  Identities=14%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             cceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCcE-EEeecCCccccCCCceee
Q 045071          235 LSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAW-FNIQAPMRRFLRSPSLLD  313 (453)
Q Consensus       235 ~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W-~~i~~p~~~~~~~~~lv~  313 (453)
                      .....|+.++    ++=.....+|.  .......+.+++++|.++......+.||.++=+- ...  +.+.  ..-.|..
T Consensus        68 S~l~~~d~~t----g~~~~~~~l~~--~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~--~y~~--EGWGLt~  137 (264)
T PF05096_consen   68 SSLRKVDLET----GKVLQSVPLPP--RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF--PYPG--EGWGLTS  137 (264)
T ss_dssp             EEEEEEETTT----SSEEEEEE-TT--T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE--E-SS--S--EEEE
T ss_pred             EEEEEEECCC----CcEEEEEECCc--cccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE--ecCC--cceEEEc
Confidence            5567888888    44333344553  2222345778999999999888999999986322 222  2221  3335666


Q ss_pred             eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEE
Q 045071          314 SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFD  393 (453)
Q Consensus       314 ~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd  393 (453)
                      .+.+|++-.+..          +++.+|+.  ..+++.++....  .-.....-..++++  ++.||.-....+.|+.-|
T Consensus       138 dg~~Li~SDGS~----------~L~~~dP~--~f~~~~~i~V~~--~g~pv~~LNELE~i--~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  138 DGKRLIMSDGSS----------RLYFLDPE--TFKEVRTIQVTD--NGRPVSNLNELEYI--NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             CSSCEEEE-SSS----------EEEEE-TT--T-SEEEEEE-EE--TTEE---EEEEEEE--TTEEEEEETTSSEEEEEE
T ss_pred             CCCEEEEECCcc----------ceEEECCc--ccceEEEEEEEE--CCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEe
Confidence            666666643311          78888874  344444432210  00000001134553  788888776788999999


Q ss_pred             CCCCceEEcCCCC-CcCCCCCCCCCCCCCceeEEEEeccccC
Q 045071          394 LCMKSWQWIPRCP-YVQANNCGGNYGDGEGELHGFAYEPRLA  434 (453)
Q Consensus       394 ~~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~~~~~f~P~l~  434 (453)
                      +++++-...=++. ..+..............+.|.||.|.-+
T Consensus       202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~  243 (264)
T PF05096_consen  202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD  243 (264)
T ss_dssp             TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred             CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence            9998754321111 1000000000000124688999988644

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=86.62  E-value=34  Score=33.60  Aligned_cols=104  Identities=19%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcccc--eec-CCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEc
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGS--LSQ-LPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHI  242 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~-LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds  242 (453)
                      ..+|.|++....   ..++.+|+.|++  |+. ++..    ...  +..++  .-+|++...+         -....+|.
T Consensus        63 v~~~~v~v~~~~---g~v~a~d~~tG~~~W~~~~~~~----~~~--~p~v~--~~~v~v~~~~---------g~l~ald~  122 (377)
T TIGR03300        63 VAGGKVYAADAD---GTVVALDAETGKRLWRVDLDER----LSG--GVGAD--GGLVFVGTEK---------GEVIALDA  122 (377)
T ss_pred             EECCEEEEECCC---CeEEEEEccCCcEeeeecCCCC----ccc--ceEEc--CCEEEEEcCC---------CEEEEEEC
Confidence            346777765432   368888998876  542 2221    111  12222  1255554332         12356676


Q ss_pred             ccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCC--cEEE
Q 045071          243 DAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFN  297 (453)
Q Consensus       243 ~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~  297 (453)
                      ++|.  -.|+....-.    .. ..+++.++.+|+.... ..+.++|.+++  .|+.
T Consensus       123 ~tG~--~~W~~~~~~~----~~-~~p~v~~~~v~v~~~~-g~l~a~d~~tG~~~W~~  171 (377)
T TIGR03300       123 EDGK--ELWRAKLSSE----VL-SPPLVANGLVVVRTND-GRLTALDAATGERLWTY  171 (377)
T ss_pred             CCCc--EeeeeccCce----ee-cCCEEECCEEEEECCC-CeEEEEEcCCCceeeEE
Confidence            6655  5787532111    11 2346678888886554 67999999875  4754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=86.03  E-value=14  Score=35.48  Aligned_cols=106  Identities=8%  Similarity=0.055  Sum_probs=59.6

Q ss_pred             EEEEEecCCCEEEEEECCC-CcEEEeecCCccccCCC-cee-eeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEE
Q 045071          274 KFYCMNYSPFSVLAYDISA-NAWFNIQAPMRRFLRSP-SLL-DSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEI  350 (453)
Q Consensus       274 ~lY~~~~~~~~i~~yD~~~-~~W~~i~~p~~~~~~~~-~lv-~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v  350 (453)
                      .+|+.......|..||+.+ ++++.+..- +. ...+ .++ .-+|+.+.++...      ...+.+|.++ +++.++.+
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~-~~~~~~l~~spd~~~lyv~~~~------~~~i~~~~~~-~~g~l~~~   73 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVV-DV-PGQVQPMVISPDKRHLYVGVRP------EFRVLSYRIA-DDGALTFA   73 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEE-ec-CCCCccEEECCCCCEEEEEECC------CCcEEEEEEC-CCCceEEe
Confidence            4677766667899999964 566655321 11 1222 232 2355544444322      1356788887 35667665


Q ss_pred             eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCC
Q 045071          351 ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCM  396 (453)
Q Consensus       351 ~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~  396 (453)
                      ...+..      .  ....+.....|..+|...+..+.+.+||+++
T Consensus        74 ~~~~~~------~--~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         74 AESPLP------G--SPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             eeecCC------C--CceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            554320      0  0012222345778888877778899999874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=84.24  E-value=44  Score=32.79  Aligned_cols=210  Identities=18%  Similarity=0.191  Sum_probs=104.6

Q ss_pred             ceeeeCCCCC--eEe-ccCCCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCC-CCcceEEEEE
Q 045071          139 GYLFDPHELS--WYR-ISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRP-RLFPSIGLKV  212 (453)
Q Consensus       139 ~~~fdp~~~~--w~~-l~l~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~-r~~~~~~~~~  212 (453)
                      ..+||+.+.+  |.. +.-..    ....+..++.+++...   ...++.+|+.|++  |+.-  +... ...+   ...
T Consensus        77 v~a~d~~tG~~~W~~~~~~~~----~~~p~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~--~~~~~~~~p---~v~  144 (377)
T TIGR03300        77 VVALDAETGKRLWRVDLDERL----SGGVGADGGLVFVGTE---KGEVIALDAEDGKELWRAK--LSSEVLSPP---LVA  144 (377)
T ss_pred             EEEEEccCCcEeeeecCCCCc----ccceEEcCCEEEEEcC---CCEEEEEECCCCcEeeeec--cCceeecCC---EEE
Confidence            3577876554  642 22111    1123445777776543   2378889998876  5432  1111 0011   111


Q ss_pred             cCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCC
Q 045071          213 TPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISA  292 (453)
Q Consensus       213 ~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~  292 (453)
                      +   .+|++...+         -....+|.++|.  -.|+.-...+.........+++.+|.+|+.... ..+.++|+++
T Consensus       145 ~---~~v~v~~~~---------g~l~a~d~~tG~--~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~-g~v~ald~~t  209 (377)
T TIGR03300       145 N---GLVVVRTND---------GRLTALDAATGE--RLWTYSRVTPALTLRGSASPVIADGGVLVGFAG-GKLVALDLQT  209 (377)
T ss_pred             C---CEEEEECCC---------CeEEEEEcCCCc--eeeEEccCCCceeecCCCCCEEECCEEEEECCC-CEEEEEEccC
Confidence            1   255554332         123566776654  578754322211011113457778888765443 5899999987


Q ss_pred             C--cEEEe-ecCCccc----c--CCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecC--CCCeEEEeecCHHHHHHh
Q 045071          293 N--AWFNI-QAPMRRF----L--RSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQAC--GTLWAEIERMPQQLYAQF  361 (453)
Q Consensus       293 ~--~W~~i-~~p~~~~----~--~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~~v~~mp~~~~~~~  361 (453)
                      +  .|+.- ..|....    .  .....+..++.+|+.+.. .         .++.+|..  ...|..-  .+.      
T Consensus       210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-g---------~l~a~d~~tG~~~W~~~--~~~------  271 (377)
T TIGR03300       210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-G---------RVAALDLRSGRVLWKRD--ASS------  271 (377)
T ss_pred             CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-C---------EEEEEECCCCcEEEeec--cCC------
Confidence            6  47532 1121100    0  011223357788775431 1         45555543  3457542  110      


Q ss_pred             hcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc--eEE
Q 045071          362 AEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS--WQW  401 (453)
Q Consensus       362 ~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~--W~~  401 (453)
                           ...  .+..++.||+.. ..+.+.++|..+.+  |+.
T Consensus       272 -----~~~--p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       272 -----YQG--PAVDDNRLYVTD-ADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             -----ccC--ceEeCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence                 001  123578888864 35789999998764  543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=84.09  E-value=27  Score=34.70  Aligned_cols=106  Identities=12%  Similarity=0.154  Sum_probs=59.9

Q ss_pred             CCE-EEEEecCCCEEEEEECCCCcEEEeecCCccccCCC--ceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeE
Q 045071          272 NGK-FYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP--SLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWA  348 (453)
Q Consensus       272 ~G~-lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~--~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~  348 (453)
                      +|. .-+..+....+++||+.+.+..++..|........  .-|.-++...++.|...         .|..|.-.+++|.
T Consensus       268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G---------~I~lLhakT~eli  338 (514)
T KOG2055|consen  268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG---------HIHLLHAKTKELI  338 (514)
T ss_pred             CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc---------eEEeehhhhhhhh
Confidence            555 55555555789999999999988855432111111  22344455555444322         4555555567775


Q ss_pred             EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCC
Q 045071          349 EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMK  397 (453)
Q Consensus       349 ~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~  397 (453)
                      --..|+..+          ..+....++..|++. ...+.|++||+..+
T Consensus       339 ~s~KieG~v----------~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~  376 (514)
T KOG2055|consen  339 TSFKIEGVV----------SDFTFSSDSKELLAS-GGTGEVYVWNLRQN  376 (514)
T ss_pred             heeeeccEE----------eeEEEecCCcEEEEE-cCCceEEEEecCCc
Confidence            444444311          123233455556655 44679999999886

>PF13854 Kelch_5: Kelch motif

Probab=82.85  E-value=2.2  Score=27.22  Aligned_cols=35  Identities=11%  Similarity=0.063  Sum_probs=23.4

Q ss_pred             cCCCceeeeCCeEEEEEEEec-cCCCCCCcEEEEEeecC
Q 045071          306 LRSPSLLDSNGKLILVAAVEK-SKLNVPKSLRLWSLQAC  343 (453)
Q Consensus       306 ~~~~~lv~~~g~L~vv~~~~~-~~~~~~~~i~vw~ld~~  343 (453)
                      +..+..+..+++||++|+... ..   ...=++|.|+..
T Consensus         5 R~~hs~~~~~~~iyi~GG~~~~~~---~~~~d~~~l~l~   40 (42)
T PF13854_consen    5 RYGHSAVVVGNNIYIFGGYSGNNN---SYSNDLYVLDLP   40 (42)
T ss_pred             ccceEEEEECCEEEEEcCccCCCC---CEECcEEEEECC
Confidence            455667788999999999763 11   111268888753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=82.71  E-value=32  Score=35.77  Aligned_cols=115  Identities=17%  Similarity=0.260  Sum_probs=62.6

Q ss_pred             CeEEECCEEEEEecCCCEEEEEECCCC--cEEEee-cCCccc------cCCCceeeeCCeEEEEEEEeccCCCCCCcEEE
Q 045071          267 RMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNIQ-APMRRF------LRSPSLLDSNGKLILVAAVEKSKLNVPKSLRL  337 (453)
Q Consensus       267 ~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i~-~p~~~~------~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~v  337 (453)
                      ..++.+|.+|+.+.. ..|.++|..++  .|+.-. .+....      .....++..+++||+...  +.        .+
T Consensus        64 tPvv~~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--dg--------~l  132 (527)
T TIGR03075        64 QPLVVDGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--DA--------RL  132 (527)
T ss_pred             CCEEECCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--CC--------EE
Confidence            468889999997655 47999999975  586532 121100      001123445778776332  11        67


Q ss_pred             EEeecC--CCCeEEE-eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEE
Q 045071          338 WSLQAC--GTLWAEI-ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQW  401 (453)
Q Consensus       338 w~ld~~--~~~W~~v-~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~  401 (453)
                      +.||..  +..|+.- ..+...    + ..   .. .-+..++.||+....     .+.+..||.++.+-.|
T Consensus       133 ~ALDa~TGk~~W~~~~~~~~~~----~-~~---ts-sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       133 VALDAKTGKVVWSKKNGDYKAG----Y-TI---TA-APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             EEEECCCCCEEeeccccccccc----c-cc---cC-CcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence            777764  3457532 111100    0 00   00 112246778775421     4689999999986433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=82.56  E-value=49  Score=32.03  Aligned_cols=117  Identities=12%  Similarity=0.180  Sum_probs=60.6

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEee-cCCc------ccc--CCCceeee---CCeEEEEEEEeccCCCCCCcEEEEE
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQ-APMR------RFL--RSPSLLDS---NGKLILVAAVEKSKLNVPKSLRLWS  339 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~-~p~~------~~~--~~~~lv~~---~g~L~vv~~~~~~~~~~~~~i~vw~  339 (453)
                      +|.+||+++. ..|...|+..+.-.... ....      ...  ...+++++   .|+||+........-+....-+||+
T Consensus       195 ~~~~~F~Sy~-G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  195 GGRLYFVSYE-GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTEEEEEBTT-SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCeEEEEecC-CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            3678888776 57888888876422111 0110      011  12345544   5899986653332212233569999


Q ss_pred             eecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCC-EEEEEEcCCCeEEEEECCCCce
Q 045071          340 LQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGE-FIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       340 ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~-~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      +|..++  +.|.+++-+-        ...++.+...+. ++|........+.+||..+.+-
T Consensus       274 ~D~~t~--krv~Ri~l~~--------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  274 YDLKTH--KRVARIPLEH--------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EETTTT--EEEEEEEEEE--------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             EECCCC--eEEEEEeCCC--------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            997655  3455554210        001233322233 5665555567899999999764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=81.52  E-value=1e+02  Score=35.13  Aligned_cols=121  Identities=15%  Similarity=0.141  Sum_probs=62.1

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEeecCC---------c--cccCCC-cee-eeCC-eEEEEEEEeccCCCCCCcEEE
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPM---------R--RFLRSP-SLL-DSNG-KLILVAAVEKSKLNVPKSLRL  337 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~---------~--~~~~~~-~lv-~~~g-~L~vv~~~~~~~~~~~~~i~v  337 (453)
                      +|.+|+.....+.|..||..++....+....         .  .....+ .++ .-+| .||++....       ..|++
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-------~~Irv  766 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-------SSIRA  766 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-------CeEEE
Confidence            5889998776688999999887665432110         0  001122 232 2344 488755321       24455


Q ss_pred             EEeecCCCCeEEEee----cCHHHHHHhhccc---------CCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEEcC
Q 045071          338 WSLQACGTLWAEIER----MPQQLYAQFAEIE---------AGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIP  403 (453)
Q Consensus       338 w~ld~~~~~W~~v~~----mp~~~~~~~~~~~---------~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~  403 (453)
                      |.++  ++.-..+..    .+..++ .+....         ...++. +..++.||+.....++|.+||.+++....+.
T Consensus       767 ~D~~--tg~~~~~~gg~~~~~~~l~-~fG~~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tia  841 (1057)
T PLN02919        767 LDLK--TGGSRLLAGGDPTFSDNLF-KFGDHDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLA  841 (1057)
T ss_pred             EECC--CCcEEEEEecccccCcccc-cccCCCCchhhhhccCCceee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence            5444  333221111    111110 111000         011222 2234468998877889999999998876654

>PLN02772 guanylate kinase

Probab=81.26  E-value=9.4  Score=37.70  Aligned_cols=76  Identities=12%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             CceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEe---ecCHHHHHHhhcccCCCc-EEEEeeCCEEEEEEc
Q 045071          309 PSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIE---RMPQQLYAQFAEIEAGNG-FDTIGHGEFIVIVIR  384 (453)
Q Consensus       309 ~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~---~mp~~~~~~~~~~~~~~~-~~~~~~g~~I~l~~~  384 (453)
                      ...++.++++||+|+..+..   ..+..||.+|..+..|+...   ..|.          .+.+ -.|+-.+++|++...
T Consensus        28 ~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~G~~P~----------~r~GhSa~v~~~~rilv~~~   94 (398)
T PLN02772         28 ETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVLGTGPK----------PCKGYSAVVLNKDRILVIKK   94 (398)
T ss_pred             ceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEecccccCCCCC----------CCCcceEEEECCceEEEEeC
Confidence            35678999999999854421   23578999999999998633   2332          1122 234455788888765


Q ss_pred             C---CCeEEEEECCCC
Q 045071          385 G---SDKALLFDLCMK  397 (453)
Q Consensus       385 ~---~~~v~~Yd~~~~  397 (453)
                      .   ...++...+.|.
T Consensus        95 ~~~~~~~~w~l~~~t~  110 (398)
T PLN02772         95 GSAPDDSIWFLEVDTP  110 (398)
T ss_pred             CCCCccceEEEEcCCH
Confidence            3   456777777763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=81.05  E-value=41  Score=30.19  Aligned_cols=135  Identities=16%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             eeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCC--cEEEeecCCccccCCCceeee
Q 045071          237 SESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNIQAPMRRFLRSPSLLDS  314 (453)
Q Consensus       237 ~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i~~p~~~~~~~~~lv~~  314 (453)
                      ...+|..+|.  ..|+.--.-..  .......+.-+|.+|+.... ..|.+||..++  .|+.- .+-+  .... .+..
T Consensus         5 l~~~d~~tG~--~~W~~~~~~~~--~~~~~~~~~~~~~v~~~~~~-~~l~~~d~~tG~~~W~~~-~~~~--~~~~-~~~~   75 (238)
T PF13360_consen    5 LSALDPRTGK--ELWSYDLGPGI--GGPVATAVPDGGRVYVASGD-GNLYALDAKTGKVLWRFD-LPGP--ISGA-PVVD   75 (238)
T ss_dssp             EEEEETTTTE--EEEEEECSSSC--SSEEETEEEETTEEEEEETT-SEEEEEETTTSEEEEEEE-CSSC--GGSG-EEEE
T ss_pred             EEEEECCCCC--EEEEEECCCCC--CCccceEEEeCCEEEEEcCC-CEEEEEECCCCCEEEEee-cccc--ccce-eeec
Confidence            3566776655  67876221000  00001134478999988654 79999999776  46543 2221  1222 3567


Q ss_pred             CCeEEEEEEEeccCCCCCCcEEEEEeecC--CCCeE-EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEE
Q 045071          315 NGKLILVAAVEKSKLNVPKSLRLWSLQAC--GTLWA-EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALL  391 (453)
Q Consensus       315 ~g~L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~-~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~  391 (453)
                      ++++|+..  .++        .++.+|..  ...|+ ....-+..-   +     .........++.+++... .+.+++
T Consensus        76 ~~~v~v~~--~~~--------~l~~~d~~tG~~~W~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~-~g~l~~  136 (238)
T PF13360_consen   76 GGRVYVGT--SDG--------SLYALDAKTGKVLWSIYLTSSPPAG---V-----RSSSSPAVDGDRLYVGTS-SGKLVA  136 (238)
T ss_dssp             TTEEEEEE--TTS--------EEEEEETTTSCEEEEEEE-SSCTCS---T-----B--SEEEEETTEEEEEET-CSEEEE
T ss_pred             cccccccc--cee--------eeEecccCCcceeeeeccccccccc---c-----ccccCceEecCEEEEEec-cCcEEE
Confidence            88888755  111        67777743  45687 333322210   0     011222334888888654 689999


Q ss_pred             EECCCCce
Q 045071          392 FDLCMKSW  399 (453)
Q Consensus       392 Yd~~~~~W  399 (453)
                      +|+++++-
T Consensus       137 ~d~~tG~~  144 (238)
T PF13360_consen  137 LDPKTGKL  144 (238)
T ss_dssp             EETTTTEE
T ss_pred             EecCCCcE
Confidence            99998764

...

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.09  E-value=21  Score=38.84  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=24.7

Q ss_pred             CCeEEECCEEEEEecCCCEEEEEECCCC--cEEE
Q 045071          266 GRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFN  297 (453)
Q Consensus       266 ~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~  297 (453)
                      ...++++|++|+.+.. ..|+++|.+++  .|+.
T Consensus       188 ~TPlvvgg~lYv~t~~-~~V~ALDa~TGk~lW~~  220 (764)
T TIGR03074       188 ATPLKVGDTLYLCTPH-NKVIALDAATGKEKWKF  220 (764)
T ss_pred             cCCEEECCEEEEECCC-CeEEEEECCCCcEEEEE
Confidence            3468899999998765 68999999975  5865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	453
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	2e-06
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	5e-04

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 51 WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSF 90
          W  LP  LL  + + L  P   +   VCKRWY L    S 
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 23/104 (22%), Positives = 29/104 (27%), Gaps = 11/104 (10%)

Query: 18  TSSSSSCGSGSGSGTATSNNPMFTACPWMDSRIWSKLPQRLLDRVLAFLPPPAFFRA-RA 76
                       S                     ++LP+ LL RVLA LP     +A R 
Sbjct: 18  PEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRL 77

Query: 77  VCKRWYGLLFSNSFLELYIH----------VSPRHHWFLFFNQK 110
           VC RW  L+       L                R HW  F+   
Sbjct: 78  VCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLS 121

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 51 WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSF 90
          W  LP  LL  + + L  P   +   VCKRWY L    S 
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 51  WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHW 103
            ++LP  +   +L+FL P    +  +    W   +       L+ +   R   
Sbjct: 5   LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI---LWRYFLLRDLP 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	453
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.9
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.9
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.9
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.89
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.88
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.82
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.8
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.8
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.8
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.79
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.78
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.77
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.73
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.64
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.64
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.45
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.99
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.78
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.5
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.46
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.37
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.14
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.34
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.91
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.44
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.26
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.16
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	94.65
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.65
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	94.52
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.29
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	94.28
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	94.27
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.25
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.2
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	93.65
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.61
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	93.5
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	92.97
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	92.8
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	92.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	92.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	92.33
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.28
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	91.97
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	91.75
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	91.66
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	91.54
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	91.0
3jro_A	753	Fusion protein of protein transport protein SEC13	90.88
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	90.45
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.2
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	89.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	89.59
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	89.55
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	89.11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	88.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	88.72
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	88.63
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	88.38
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	88.35
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	88.12
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	87.61
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	87.52
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	87.38
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	85.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	85.79
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	85.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	85.63
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	85.34
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	85.3
2p4o_A	306	Hypothetical protein; putative lactonase, structur	85.28
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	85.09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	84.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	84.52
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	83.43
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	82.97
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	82.37
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	81.86
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	81.7
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	81.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	81.35

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.90  E-value=4.5e-22  Score=190.15  Aligned_cols=246  Identities=16%  Similarity=0.165  Sum_probs=185.0

Q ss_pred             cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCC--CCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCC
Q 045071          138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA--GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPT  215 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~--~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~  215 (453)
                      ....||+.+++|..++....++..+.++..+|.|++.++..  ....++++||.+++|..+++++.+|..+.+... +  
T Consensus        25 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--  101 (306)
T 3ii7_A           25 SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-E--  101 (306)
T ss_dssp             SEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-T--
T ss_pred             eEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-C--
Confidence            45689999999999974444565555666788888777633  235789999999999999999988877654433 3  


Q ss_pred             ceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC---------CCEEE
Q 045071          216 AVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS---------PFSVL  286 (453)
Q Consensus       216 ~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~---------~~~i~  286 (453)
                       .+||++|+.....  .....+++||+.+    ++|+.++++|..  .....++.++|++|++++.         ...+.
T Consensus       102 -~~iyv~GG~~~~~--~~~~~~~~~d~~~----~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  172 (306)
T 3ii7_A          102 -GKIYTSGGSEVGN--SALYLFECYDTRT----ESWHTKPSMLTQ--RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE  172 (306)
T ss_dssp             -TEEEEECCBBTTB--SCCCCEEEEETTT----TEEEEECCCSSC--CBSCEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred             -CEEEEECCCCCCC--cEeeeEEEEeCCC----CceEeCCCCcCC--cceeEEEEECCEEEEECCCCCCCCcccccceEE
Confidence             3899998853111  1245679999999    999999888763  2335578899999999642         35699


Q ss_pred             EEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccC
Q 045071          287 AYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEA  366 (453)
Q Consensus       287 ~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~  366 (453)
                      +||+.+++|+.+. ++|..+..+.++..+++||++|+.....    ..-.+|.+|..+++|+++..||..          
T Consensus       173 ~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~i~v~GG~~~~~----~~~~~~~yd~~~~~W~~~~~~p~~----------  237 (306)
T 3ii7_A          173 VYDPATETWTELC-PMIEARKNHGLVFVKDKIFAVGGQNGLG----GLDNVEYYDIKLNEWKMVSPMPWK----------  237 (306)
T ss_dssp             EEETTTTEEEEEC-CCSSCCBSCEEEEETTEEEEECCEETTE----EBCCEEEEETTTTEEEECCCCSCC----------
T ss_pred             EeCCCCCeEEECC-CccchhhcceEEEECCEEEEEeCCCCCC----CCceEEEeeCCCCcEEECCCCCCC----------
Confidence            9999999999984 5555556667788899999999875431    112688889989999999888752          


Q ss_pred             CCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcCCCCCcCC
Q 045071          367 GNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       367 ~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~~~p~~~~  410 (453)
                      +....++..++.||+.+..     ...+.+||+++++|+.++.+|..+.
T Consensus       238 r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~  286 (306)
T 3ii7_A          238 GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPV  286 (306)
T ss_dssp             BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSC
T ss_pred             ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccc
Confidence            1234455668999998652     4689999999999999988875543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.90  E-value=1.2e-21  Score=188.11  Aligned_cols=243  Identities=16%  Similarity=0.199  Sum_probs=178.9

Q ss_pred             ceeeeCCCCCeEeccCCC-CCCCCeeeeecCceEEEEecC-----CC----CeeEEEEcCcccceecCCCCCCCCCcceE
Q 045071          139 GYLFDPHELSWYRISFAL-VPSEFSPASSSGGLVCWVSDH-----AG----AKTLILCNPVTGSLSQLPPTLRPRLFPSI  208 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l~~-lp~~~~~~~s~~Gll~~~~~~-----~~----~~~~~v~NP~T~~w~~LP~~~~~r~~~~~  208 (453)
                      ...|||.+++|...++|. .|+..+.++..+|.|++.++.     ..    ...++++||.+++|..+++++.+|..+.+
T Consensus        15 ~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~   94 (315)
T 4asc_A           15 AVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGL   94 (315)
T ss_dssp             EEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEE
T ss_pred             eEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeE
Confidence            468999999998755553 356556666677877776652     11    23489999999999999999988877654


Q ss_pred             EEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC------C
Q 045071          209 GLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS------P  282 (453)
Q Consensus       209 ~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~------~  282 (453)
                      +.. +   .+|+++|+............+++||..+    ++|+.++++|..  .....++.+++++|++++.      .
T Consensus        95 ~~~-~---~~lyv~GG~~~~~~~~~~~~~~~~d~~~----~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~  164 (315)
T 4asc_A           95 GEA-L---NSIYVVGGREIKDGERCLDSVMCYDRLS----FKWGESDPLPYV--VYGHTVLSHMDLVYVIGGKGSDRKCL  164 (315)
T ss_dssp             EEE-T---TEEEEECCEESSTTCCBCCCEEEEETTT----TEEEECCCCSSC--CBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred             EEE-C---CEEEEEeCCcCCCCCcccceEEEECCCC----CcEeECCCCCCc--ccceeEEEECCEEEEEeCCCCCCccc
Confidence            443 2   3899998842111111346789999999    999999988863  2335578899999999764      2


Q ss_pred             CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhh
Q 045071          283 FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFA  362 (453)
Q Consensus       283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~  362 (453)
                      ..+.+||+.+++|+.+. ++|..+..+.++..+++||++|+.....    ..-.+|.+|..+++|+++..||..      
T Consensus       165 ~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~W~~~~~~p~~------  233 (315)
T 4asc_A          165 NKMCVYDPKKFEWKELA-PMQTARSLFGATVHDGRIIVAAGVTDTG----LTSSAEVYSITDNKWAPFEAFPQE------  233 (315)
T ss_dssp             CCEEEEETTTTEEEECC-CCSSCCBSCEEEEETTEEEEEEEECSSS----EEEEEEEEETTTTEEEEECCCSSC------
T ss_pred             ceEEEEeCCCCeEEECC-CCCCchhceEEEEECCEEEEEeccCCCC----ccceEEEEECCCCeEEECCCCCCc------
Confidence            57999999999999884 5555556667788999999999975432    123789999999999999888752      


Q ss_pred             cccCCCcEEEEeeCCEEEEEEcC--------------CCeEEEEECCCCceEEcCCCC
Q 045071          363 EIEAGNGFDTIGHGEFIVIVIRG--------------SDKALLFDLCMKSWQWIPRCP  406 (453)
Q Consensus       363 ~~~~~~~~~~~~~g~~I~l~~~~--------------~~~v~~Yd~~~~~W~~l~~~p  406 (453)
                          +....++..++.||+.+..              ...+.+||+++++|+.++..|
T Consensus       234 ----r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~  287 (315)
T 4asc_A          234 ----RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI  287 (315)
T ss_dssp             ----CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCS
T ss_pred             ----ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCC
Confidence                1233455668899987542              246899999999999995555

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.90  E-value=1.5e-21  Score=186.09  Aligned_cols=244  Identities=15%  Similarity=0.121  Sum_probs=180.1

Q ss_pred             cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCC---CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcC
Q 045071          138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTP  214 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~  214 (453)
                      ....||+.+++|..++....++..+.++..+|.|++.++...   ...++++||.+++|..+++++.+|..+.+++. + 
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-  108 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N-  108 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T-
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C-
Confidence            356899999999998733334544455566888887776322   34789999999999999999988877654443 3 


Q ss_pred             CceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC-------CCEEEE
Q 045071          215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS-------PFSVLA  287 (453)
Q Consensus       215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-------~~~i~~  287 (453)
                        .+||++|+.....   ....+++||..+    ++|+.++++|..  .....++.++|++|++++.       ...+..
T Consensus       109 --~~iyv~GG~~~~~---~~~~~~~~d~~~----~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  177 (302)
T 2xn4_A          109 --GLLYAVGGFDGST---GLSSVEAYNIKS----NEWFHVAPMNTR--RSSVGVGVVGGLLYAVGGYDVASRQCLSTVEC  177 (302)
T ss_dssp             --TEEEEEEEECSSC---EEEEEEEEETTT----TEEEEECCCSSC--CBSCEEEEETTEEEEECCEETTTTEECCCEEE
T ss_pred             --CEEEEEcCCCCCc---cCceEEEEeCCC----CeEeecCCCCCc--ccCceEEEECCEEEEEeCCCCCCCccccEEEE
Confidence              3899988753221   235679999999    999999888753  2335578899999999642       246999


Q ss_pred             EECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCC
Q 045071          288 YDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAG  367 (453)
Q Consensus       288 yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~  367 (453)
                      ||+.+++|+.+ .++|..+..+.++..+++||++|+.....    ..-.+|.+|..+++|+++..||..          +
T Consensus       178 yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~W~~~~~~~~~----------r  242 (302)
T 2xn4_A          178 YNATTNEWTYI-AEMSTRRSGAGVGVLNNLLYAVGGHDGPL----VRKSVEVYDPTTNAWRQVADMNMC----------R  242 (302)
T ss_dssp             EETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBSSSS----BCCCEEEEETTTTEEEEECCCSSC----------C
T ss_pred             EeCCCCcEEEC-CCCccccccccEEEECCEEEEECCCCCCc----ccceEEEEeCCCCCEeeCCCCCCc----------c
Confidence            99999999998 34555455667788999999999865421    112688889989999999988752          1


Q ss_pred             CcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcC-CCCCcC
Q 045071          368 NGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIP-RCPYVQ  409 (453)
Q Consensus       368 ~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~-~~p~~~  409 (453)
                      ....++..++.||+.+..     ...+.+||+++++|+.++ .+|..+
T Consensus       243 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r  290 (302)
T 2xn4_A          243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGR  290 (302)
T ss_dssp             BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCC
T ss_pred             ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCccc
Confidence            233455578999998652     357999999999999997 566543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.89  E-value=9.8e-22  Score=188.11  Aligned_cols=244  Identities=16%  Similarity=0.179  Sum_probs=182.3

Q ss_pred             cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecC----CC---CeeEEEEcCcccceecCCCCCCCCCcceEEE
Q 045071          138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDH----AG---AKTLILCNPVTGSLSQLPPTLRPRLFPSIGL  210 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~----~~---~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~  210 (453)
                      ....||+.+++|..++....++....++..++.|++.++.    ..   ...++++||.+++|..+++++.+|..+.++.
T Consensus        40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  119 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV  119 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred             eEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE
Confidence            4578999999999987433455555556668888887764    11   2468999999999999999998887765444


Q ss_pred             EEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEE
Q 045071          211 KVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSV  285 (453)
Q Consensus       211 ~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i  285 (453)
                      . +   .+||++|+.....   ....+++||..+    ++|+.+.++|..  .....+++++++||++++.     ...+
T Consensus       120 ~-~---~~iyv~GG~~~~~---~~~~~~~yd~~~----~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~  186 (308)
T 1zgk_A          120 I-D---GHIYAVGGSHGCI---HHNSVERYEPER----DEWHLVAPMLTR--RIGVGVAVLNRLLYAVGGFDGTNRLNSA  186 (308)
T ss_dssp             E-T---TEEEEECCEETTE---ECCCEEEEETTT----TEEEECCCCSSC--CBSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred             E-C---CEEEEEcCCCCCc---ccccEEEECCCC----CeEeECCCCCcc--ccceEEEEECCEEEEEeCCCCCCcCceE
Confidence            3 3   3899998853221   245679999999    999999888753  2335578889999999753     2579


Q ss_pred             EEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhccc
Q 045071          286 LAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIE  365 (453)
Q Consensus       286 ~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~  365 (453)
                      ..||+.+++|+.+. ++|..+....++..+++||++|+.....    ..-.+|.+|..+++|+++..||..         
T Consensus       187 ~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~p~~---------  252 (308)
T 1zgk_A          187 ECYYPERNEWRMIT-AMNTIRSGAGVCVLHNCIYAAGGYDGQD----QLNSVERYDVETETWTFVAPMKHR---------  252 (308)
T ss_dssp             EEEETTTTEEEECC-CCSSCCBSCEEEEETTEEEEECCBCSSS----BCCCEEEEETTTTEEEECCCCSSC---------
T ss_pred             EEEeCCCCeEeeCC-CCCCccccceEEEECCEEEEEeCCCCCC----ccceEEEEeCCCCcEEECCCCCCC---------
Confidence            99999999999884 4554455567778899999999865431    123688889889999999888752         


Q ss_pred             CCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcCCCCCcC
Q 045071          366 AGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIPRCPYVQ  409 (453)
Q Consensus       366 ~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~~~p~~~  409 (453)
                       +....++..++.||+.+..     ...+.+||+++++|+.++.+|..+
T Consensus       253 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  300 (308)
T 1zgk_A          253 -RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR  300 (308)
T ss_dssp             -CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             -ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCc
Confidence             1233455568999998642     468999999999999998888654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.89  E-value=1.1e-20  Score=181.65  Aligned_cols=238  Identities=16%  Similarity=0.255  Sum_probs=176.5

Q ss_pred             ceeeeCCCCCeEeccCCC-CCCCCeeeeecCceEEEEecCC----C-----CeeEEEEcCcccceecCCCCCCCCCcceE
Q 045071          139 GYLFDPHELSWYRISFAL-VPSEFSPASSSGGLVCWVSDHA----G-----AKTLILCNPVTGSLSQLPPTLRPRLFPSI  208 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l~~-lp~~~~~~~s~~Gll~~~~~~~----~-----~~~~~v~NP~T~~w~~LP~~~~~r~~~~~  208 (453)
                      ...|||.+++|...+++. .|+..+.++..+|.|++.++..    .     ...++++||.+++|..+++++.+|..+.+
T Consensus        26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  105 (318)
T 2woz_A           26 AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL  105 (318)
T ss_dssp             EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEE
T ss_pred             eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccce
Confidence            468999999999866553 4666666677788888777621    1     12388999999999999999998876654


Q ss_pred             EEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC------C
Q 045071          209 GLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS------P  282 (453)
Q Consensus       209 ~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~------~  282 (453)
                      +.. +   .+||++|+..... ......+++||+.+    ++|+.++++|..+  ..+.+++++|+||++++.      .
T Consensus       106 ~~~-~---~~iyv~GG~~~~~-~~~~~~~~~yd~~~----~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~  174 (318)
T 2woz_A          106 GEV-D---DKIYVVAGKDLQT-EASLDSVLCYDPVA----AKWSEVKNLPIKV--YGHNVISHNGMIYCLGGKTDDKKCT  174 (318)
T ss_dssp             EEE-T---TEEEEEEEEBTTT-CCEEEEEEEEETTT----TEEEEECCCSSCE--ESCEEEEETTEEEEECCEESSSCBC
T ss_pred             EEE-C---CEEEEEcCccCCC-CcccceEEEEeCCC----CCEeECCCCCCcc--cccEEEEECCEEEEEcCCCCCCCcc
Confidence            443 3   3899998753111 11245679999999    9999998887632  335577899999999752      2


Q ss_pred             CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhh
Q 045071          283 FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFA  362 (453)
Q Consensus       283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~  362 (453)
                      ..+.+||+.+++|+.+. ++|..+..+.++..+++||++|+.....    ..-.+|.+|..+++|+++..||..      
T Consensus       175 ~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~W~~~~~~p~~------  243 (318)
T 2woz_A          175 NRVFIYNPKKGDWKDLA-PMKTPRSMFGVAIHKGKIVIAGGVTEDG----LSASVEAFDLKTNKWEVMTEFPQE------  243 (318)
T ss_dssp             CCEEEEETTTTEEEEEC-CCSSCCBSCEEEEETTEEEEEEEEETTE----EEEEEEEEETTTCCEEECCCCSSC------
T ss_pred             ceEEEEcCCCCEEEECC-CCCCCcccceEEEECCEEEEEcCcCCCC----ccceEEEEECCCCeEEECCCCCCc------
Confidence            46999999999999984 4555555567788999999999976431    123788899989999999888762      


Q ss_pred             cccCCCcEEEEeeCCEEEEEEcC--------------CCeEEEEECCCCceEEc
Q 045071          363 EIEAGNGFDTIGHGEFIVIVIRG--------------SDKALLFDLCMKSWQWI  402 (453)
Q Consensus       363 ~~~~~~~~~~~~~g~~I~l~~~~--------------~~~v~~Yd~~~~~W~~l  402 (453)
                          +....++..++.||+.+..              ...+.+||+++++|+.+
T Consensus       244 ----r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          244 ----RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             ----CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             ----ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence                1233455678899987542              35799999999999998

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.88  E-value=3.7e-21  Score=183.25  Aligned_cols=244  Identities=13%  Similarity=0.150  Sum_probs=181.6

Q ss_pred             cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCC---CCeeEEEEcCcccc---eecCCCCCCCCCcceEEEE
Q 045071          138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA---GAKTLILCNPVTGS---LSQLPPTLRPRLFPSIGLK  211 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~---~~~~~~v~NP~T~~---w~~LP~~~~~r~~~~~~~~  211 (453)
                      ....||+.+++|..++....++..+.++..+|.|++.++..   ....++++||.+++   |..+++++.+|..+.+...
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~  111 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL  111 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE
Confidence            45789999999999873333554555566678787776532   23479999999999   9999999988877654443


Q ss_pred             EcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEEE
Q 045071          212 VTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSVL  286 (453)
Q Consensus       212 ~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~  286 (453)
                       +   .+|+++|+.....   ....+++||..+    ++|+.++++|..  .....+++++|+||++++.     ...+.
T Consensus       112 -~---~~lyv~GG~~~~~---~~~~~~~~d~~~----~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  178 (301)
T 2vpj_A          112 -G---DMIYVSGGFDGSR---RHTSMERYDPNI----DQWSMLGDMQTA--REGAGLVVASGVIYCLGGYDGLNILNSVE  178 (301)
T ss_dssp             -T---TEEEEECCBCSSC---BCCEEEEEETTT----TEEEEEEECSSC--CBSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred             -C---CEEEEEcccCCCc---ccceEEEEcCCC----CeEEECCCCCCC--cccceEEEECCEEEEECCCCCCcccceEE
Confidence             3   3899998854221   245679999999    999999888753  2335578889999999753     25799


Q ss_pred             EEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccC
Q 045071          287 AYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEA  366 (453)
Q Consensus       287 ~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~  366 (453)
                      +||+.+++|+.+ .++|..+..+.++..+++||++|+.....    ..-.+|.+|..+++|+++..||..          
T Consensus       179 ~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~p~~----------  243 (301)
T 2vpj_A          179 KYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDGTA----HLSSVEAYNIRTDSWTTVTSMTTP----------  243 (301)
T ss_dssp             EEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBCSSS----BCCCEEEEETTTTEEEEECCCSSC----------
T ss_pred             EEeCCCCcEEeC-CCCCcccccceEEEECCEEEEEeCCCCCc----ccceEEEEeCCCCcEEECCCCCCc----------
Confidence            999999999998 34555555667788999999999865432    122678889889999999888752          


Q ss_pred             CCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcCCCCCcC
Q 045071          367 GNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIPRCPYVQ  409 (453)
Q Consensus       367 ~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~~~p~~~  409 (453)
                      +....++..++.||+.+..     ...+.+||+++++|+.++.+|..+
T Consensus       244 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r  291 (301)
T 2vpj_A          244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQR  291 (301)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCccc
Confidence            1233455668999998642     257899999999999998887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.82  E-value=1.1e-18  Score=166.63  Aligned_cols=218  Identities=13%  Similarity=0.157  Sum_probs=161.0

Q ss_pred             CceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC
Q 045071          168 GGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF  247 (453)
Q Consensus       168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~  247 (453)
                      .+.|++.++......++++||.+++|..+++++.+|..+.+.. .+   -+||++|+.. .   .....+++||..+   
T Consensus        11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~---~~lyv~GG~~-~---~~~~~~~~~d~~~---   79 (306)
T 3ii7_A           11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WD---NVVYILGGSQ-L---FPIKRMDCYNVVK---   79 (306)
T ss_dssp             CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ET---TEEEEECCBS-S---SBCCEEEEEETTT---
T ss_pred             cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-EC---CEEEEEeCCC-C---CCcceEEEEeCCC---
Confidence            4666666654445689999999999999999998887765544 33   2799998864 1   1345679999999   


Q ss_pred             CCcccccCCCCCcccCCCCCeEEECCEEEEEecCC------CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEE
Q 045071          248 FSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP------FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILV  321 (453)
Q Consensus       248 ~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv  321 (453)
                       ++|+.+.++|..  .....++.++|+||++++..      ..+.+||+.+++|+.+ .++|..+..+.++..+++||++
T Consensus        80 -~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~  155 (306)
T 3ii7_A           80 -DSWYSKLGPPTP--RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHGMVEANGLIYVC  155 (306)
T ss_dssp             -TEEEEEECCSSC--CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEE
T ss_pred             -CeEEECCCCCcc--ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeEEEEECCEEEEE
Confidence             999999888753  23355778899999997532      4699999999999988 4455555566778899999999


Q ss_pred             EEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCC
Q 045071          322 AAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCM  396 (453)
Q Consensus       322 ~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~  396 (453)
                      |+...........-.+|.+|..+++|+++..||..          +....++..++.||+.+..     ...+.+||+++
T Consensus       156 GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          156 GGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA----------RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             CCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC----------CBSCEEEEETTEEEEECCEETTEEBCCEEEEETTT
T ss_pred             CCCCCCCCcccccceEEEeCCCCCeEEECCCccch----------hhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCC
Confidence            98754321000022678889989999999888752          1233445568999997542     36799999999


Q ss_pred             CceEEcCCCCCcCC
Q 045071          397 KSWQWIPRCPYVQA  410 (453)
Q Consensus       397 ~~W~~l~~~p~~~~  410 (453)
                      ++|+.++.+|..+.
T Consensus       226 ~~W~~~~~~p~~r~  239 (306)
T 3ii7_A          226 NEWKMVSPMPWKGV  239 (306)
T ss_dssp             TEEEECCCCSCCBS
T ss_pred             CcEEECCCCCCCcc
Confidence            99999988886543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.80  E-value=1.1e-17  Score=159.32  Aligned_cols=217  Identities=17%  Similarity=0.166  Sum_probs=158.5

Q ss_pred             CceEEEEecCC--CCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccC
Q 045071          168 GGLVCWVSDHA--GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAG  245 (453)
Q Consensus       168 ~Gll~~~~~~~--~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~  245 (453)
                      ++.|++.++..  ....+.++||.+++|..+++++.+|..+.+... +   .+||++|+.....   ....+++||..+ 
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~---~~lyv~GG~~~~~---~~~~~~~~d~~~-   86 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-A---GLVFAVGGFNGSL---RVRTVDSYDPVK-   86 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T---TEEEEESCBCSSS---BCCCEEEEETTT-
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-C---CEEEEEeCcCCCc---cccceEEECCCC-
Confidence            44555555422  234689999999999999999988876654333 3   3899998853221   235679999999 


Q ss_pred             CCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC-----CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEE
Q 045071          246 GFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP-----FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLIL  320 (453)
Q Consensus       246 ~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~v  320 (453)
                         ++|+.++++|..+  ....++.++|++|++++..     ..+..||+.+++|+.+ .++|..+..+.++..+++||+
T Consensus        87 ---~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv  160 (302)
T 2xn4_A           87 ---DQWTSVANMRDRR--STLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVGVVGGLLYA  160 (302)
T ss_dssp             ---TEEEEECCCSSCC--BSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEE
T ss_pred             ---CceeeCCCCCccc--cceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEEEECCEEEE
Confidence               9999999887632  2355788899999997532     4689999999999998 345555556677789999999


Q ss_pred             EEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECC
Q 045071          321 VAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLC  395 (453)
Q Consensus       321 v~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~  395 (453)
                      +|+......  ...-.+|.+|..+++|+++..||..          +....++..++.||+.+..     ...+.+||++
T Consensus       161 ~GG~~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~----------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~  228 (302)
T 2xn4_A          161 VGGYDVASR--QCLSTVECYNATTNEWTYIAEMSTR----------RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPT  228 (302)
T ss_dssp             ECCEETTTT--EECCCEEEEETTTTEEEEECCCSSC----------CBSCEEEEETTEEEEECCBSSSSBCCCEEEEETT
T ss_pred             EeCCCCCCC--ccccEEEEEeCCCCcEEECCCCccc----------cccccEEEECCEEEEECCCCCCcccceEEEEeCC
Confidence            998754310  0012578889889999999888752          1233455668999998642     4679999999


Q ss_pred             CCceEEcCCCCCcCC
Q 045071          396 MKSWQWIPRCPYVQA  410 (453)
Q Consensus       396 ~~~W~~l~~~p~~~~  410 (453)
                      +++|+.++.+|..+.
T Consensus       229 ~~~W~~~~~~~~~r~  243 (302)
T 2xn4_A          229 TNAWRQVADMNMCRR  243 (302)
T ss_dssp             TTEEEEECCCSSCCB
T ss_pred             CCCEeeCCCCCCccc
Confidence            999999988876543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.80  E-value=8.5e-18  Score=159.91  Aligned_cols=216  Identities=13%  Similarity=0.139  Sum_probs=158.8

Q ss_pred             cCceEEEEec-CC---CCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEc
Q 045071          167 SGGLVCWVSD-HA---GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHI  242 (453)
Q Consensus       167 ~~Gll~~~~~-~~---~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds  242 (453)
                      .++.|++.++ ..   ....++++||.+++|..+++++.+|..+.+.. .+   .+|+++|+.....   ....+++||.
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~---~~l~v~GG~~~~~---~~~~~~~~d~   85 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-LH---DRIYVIGGYDGRS---RLSSVECLDY   85 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET---TEEEEECCBCSSC---BCCCEEEEET
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-EC---CEEEEEcCCCCCc---cCceEEEEEC
Confidence            4566666555 22   23478999999999999999988887655433 33   3899998853221   2356799999


Q ss_pred             ccCCCCCc---ccccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEEEEEECCCCcEEEeecCCccccCCCceeee
Q 045071          243 DAGGFFSL---WGTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDS  314 (453)
Q Consensus       243 ~~~~~~~~---W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~  314 (453)
                      .+    ++   |+.+.++|..  .....++.++|++|++++.     ...+..||+.+++|+.+. ++|..+..+.++..
T Consensus        86 ~~----~~~~~W~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~  158 (301)
T 2vpj_A           86 TA----DEDGVWYSVAPMNVR--RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTAREGAGLVVA  158 (301)
T ss_dssp             TC----CTTCCCEEECCCSSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSCCBSCEEEEE
T ss_pred             CC----CCCCeeEECCCCCCC--ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCCcccceEEEE
Confidence            99    88   9999888753  2335578889999999753     257999999999999984 44444555677788


Q ss_pred             CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeE
Q 045071          315 NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKA  389 (453)
Q Consensus       315 ~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v  389 (453)
                      +++||++|+.....    ..-.+|.+|..+++|+++..||..          +....++..++.||+.+..     ...+
T Consensus       159 ~~~iyv~GG~~~~~----~~~~~~~~d~~~~~W~~~~~~p~~----------r~~~~~~~~~~~i~v~GG~~~~~~~~~v  224 (301)
T 2vpj_A          159 SGVIYCLGGYDGLN----ILNSVEKYDPHTGHWTNVTPMATK----------RSGAGVALLNDHIYVVGGFDGTAHLSSV  224 (301)
T ss_dssp             TTEEEEECCBCSSC----BCCCEEEEETTTTEEEEECCCSSC----------CBSCEEEEETTEEEEECCBCSSSBCCCE
T ss_pred             CCEEEEECCCCCCc----ccceEEEEeCCCCcEEeCCCCCcc----------cccceEEEECCEEEEEeCCCCCcccceE
Confidence            99999999865431    122678889889999999888752          1233455668999998643     4679


Q ss_pred             EEEECCCCceEEcCCCCCcCC
Q 045071          390 LLFDLCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       390 ~~Yd~~~~~W~~l~~~p~~~~  410 (453)
                      .+||+++++|+.++.+|..+.
T Consensus       225 ~~yd~~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          225 EAYNIRTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             EEEETTTTEEEEECCCSSCCB
T ss_pred             EEEeCCCCcEEECCCCCCccc
Confidence            999999999999988876543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.80  E-value=4.9e-18  Score=162.34  Aligned_cols=222  Identities=14%  Similarity=0.122  Sum_probs=160.1

Q ss_pred             eeecCceEEEEecC--CCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCC-cccccccceeEE
Q 045071          164 ASSSGGLVCWVSDH--AGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLIS-PYAVKNLSSESF  240 (453)
Q Consensus       164 ~~s~~Gll~~~~~~--~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~-~~~~~~~~~evy  240 (453)
                      ....++.|++.++.  .....++++||.+++|..+++++.+|..+.+... +   .+||++|+.... ........+++|
T Consensus        20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~---~~lyv~GG~~~~~~~~~~~~~~~~~   95 (308)
T 1zgk_A           20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G---GLLYAVGGRNNSPDGNTDSSALDCY   95 (308)
T ss_dssp             -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T---TEEEEECCEEEETTEEEECCCEEEE
T ss_pred             ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-C---CEEEEECCCcCCCCCCeecceEEEE
Confidence            34455666665552  2235789999999999999999988877654333 3   389999885210 011123567999


Q ss_pred             EcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEEEEEECCCCcEEEeecCCccccCCCceeeeC
Q 045071          241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSN  315 (453)
Q Consensus       241 ds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~  315 (453)
                      |..+    ++|+.+.++|..  .....++.++|++|++++.     ...+..||+.+++|+.+. ++|..+....++..+
T Consensus        96 d~~~----~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~  168 (308)
T 1zgk_A           96 NPMT----NQWSPCAPMSVP--RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTRRIGVGVAVLN  168 (308)
T ss_dssp             ETTT----TEEEECCCCSSC--CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEET
T ss_pred             CCCC----CeEeECCCCCcC--ccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCccccceEEEEEC
Confidence            9999    999999888763  2335578889999999652     246999999999999873 455545566777889


Q ss_pred             CeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEE
Q 045071          316 GKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKAL  390 (453)
Q Consensus       316 g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~  390 (453)
                      ++||++|+.....    ..-.+|.+|..+++|+++..||..          +....++..++.||+.+..     ...+.
T Consensus       169 ~~iyv~GG~~~~~----~~~~~~~yd~~~~~W~~~~~~p~~----------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~  234 (308)
T 1zgk_A          169 RLLYAVGGFDGTN----RLNSAECYYPERNEWRMITAMNTI----------RSGAGVCVLHNCIYAAGGYDGQDQLNSVE  234 (308)
T ss_dssp             TEEEEECCBCSSC----BCCCEEEEETTTTEEEECCCCSSC----------CBSCEEEEETTEEEEECCBCSSSBCCCEE
T ss_pred             CEEEEEeCCCCCC----cCceEEEEeCCCCeEeeCCCCCCc----------cccceEEEECCEEEEEeCCCCCCccceEE
Confidence            9999999865432    122678889889999999888752          1233445568999998642     46899


Q ss_pred             EEECCCCceEEcCCCCCcCC
Q 045071          391 LFDLCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       391 ~Yd~~~~~W~~l~~~p~~~~  410 (453)
                      +||+++++|+.++.+|..+.
T Consensus       235 ~yd~~~~~W~~~~~~p~~r~  254 (308)
T 1zgk_A          235 RYDVETETWTFVAPMKHRRS  254 (308)
T ss_dssp             EEETTTTEEEECCCCSSCCB
T ss_pred             EEeCCCCcEEECCCCCCCcc
Confidence            99999999999988876543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.79  E-value=7.2e-18  Score=164.49  Aligned_cols=250  Identities=14%  Similarity=0.062  Sum_probs=166.1

Q ss_pred             cceeeeCC--CCCeEecc-CCCCCCCCeeeeecCceEEEEecC-C-------CCeeEEEEcCcccceecCCCCC-CCCCc
Q 045071          138 EGYLFDPH--ELSWYRIS-FALVPSEFSPASSSGGLVCWVSDH-A-------GAKTLILCNPVTGSLSQLPPTL-RPRLF  205 (453)
Q Consensus       138 ~~~~fdp~--~~~w~~l~-l~~lp~~~~~~~s~~Gll~~~~~~-~-------~~~~~~v~NP~T~~w~~LP~~~-~~r~~  205 (453)
                      ..+.||+.  +++|..++ +|..|+..+.++..+|.|++.++. .       ....+++|||.+++|..+++++ .+|..
T Consensus        32 ~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~  111 (357)
T 2uvk_A           32 AWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAG  111 (357)
T ss_dssp             CEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSS
T ss_pred             eEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCccccc
Confidence            35689997  48999987 443566656666778888887764 1       1346899999999999999988 66665


Q ss_pred             ceEEEEEcCCceEEEEEccCCCCccc-------------------------------ccccceeEEEcccCCCCCccccc
Q 045071          206 PSIGLKVTPTAVDVTVAGDDLISPYA-------------------------------VKNLSSESFHIDAGGFFSLWGTT  254 (453)
Q Consensus       206 ~~~~~~~~~~~ykvv~~g~~~~~~~~-------------------------------~~~~~~evyds~~~~~~~~W~~~  254 (453)
                      +.+.. .+   .+||++|+.......                               .....+++||..+    ++|+.+
T Consensus       112 ~~~~~-~~---~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~----~~W~~~  183 (357)
T 2uvk_A          112 HVTFV-HN---GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST----QQWSYA  183 (357)
T ss_dssp             EEEEE-ET---TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTT----TEEEEE
T ss_pred             ceEEE-EC---CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCC----CcEEEC
Confidence            54333 33   389999885321100                               0125689999999    999999


Q ss_pred             CCCCCcccCCCCCeEEECCEEEEEecC------CCEEEEEEC--CCCcEEEeec-CCccccCCCceeeeCCeEEEEEEEe
Q 045071          255 SSLPRLCSLESGRMVQVNGKFYCMNYS------PFSVLAYDI--SANAWFNIQA-PMRRFLRSPSLLDSNGKLILVAAVE  325 (453)
Q Consensus       255 ~~~p~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~yD~--~~~~W~~i~~-p~~~~~~~~~lv~~~g~L~vv~~~~  325 (453)
                      .++|.... ....+++++++||++++.      ...+..||+  .+++|+.+.. |.+.....+.++..+++||++|+..
T Consensus       184 ~~~p~~~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~  262 (357)
T 2uvk_A          184 GESPWYGT-AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAG  262 (357)
T ss_dssp             EECSSCCC-BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEE
T ss_pred             CCCCCCCc-ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCcc
Confidence            88874222 124578889999999652      246888987  8999998732 3333333445788999999999865


Q ss_pred             ccC------------C-CCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC------C
Q 045071          326 KSK------------L-NVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG------S  386 (453)
Q Consensus       326 ~~~------------~-~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~------~  386 (453)
                      ...            . .......+|.+|..+++|+++..||...          ....++..++.||+.+..      .
T Consensus       263 ~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~~i~v~GG~~~~~~~~  332 (357)
T 2uvk_A          263 FKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR----------AYGVSLPWNNSLLIIGGETAGGKAV  332 (357)
T ss_dssp             CTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC----------BSSEEEEETTEEEEEEEECGGGCEE
T ss_pred             ccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc----------ccceeEEeCCEEEEEeeeCCCCCEe
Confidence            321            0 0011235788888899999999988521          223445578999998652      2


Q ss_pred             CeEEEEECCCCceEEcCCCC
Q 045071          387 DKALLFDLCMKSWQWIPRCP  406 (453)
Q Consensus       387 ~~v~~Yd~~~~~W~~l~~~p  406 (453)
                      ..+.+|++++++|.++...|
T Consensus       333 ~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          333 TDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             EEEEEEEC-CCSCEEEC---
T ss_pred             eeEEEEEEcCcEeEeeeccc
Confidence            57889999999998876544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.78  E-value=1.2e-17  Score=163.03  Aligned_cols=229  Identities=11%  Similarity=0.052  Sum_probs=155.0

Q ss_pred             CCCeeeeecCceEEEEecCCCCeeEEEEcCc--ccceecCCCCC-CCCCcceEEEEEcCCceEEEEEccCCC--Cccccc
Q 045071          159 SEFSPASSSGGLVCWVSDHAGAKTLILCNPV--TGSLSQLPPTL-RPRLFPSIGLKVTPTAVDVTVAGDDLI--SPYAVK  233 (453)
Q Consensus       159 ~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~--T~~w~~LP~~~-~~r~~~~~~~~~~~~~ykvv~~g~~~~--~~~~~~  233 (453)
                      +.....+..++.|++.++.. ...++++|+.  +++|..+++++ .+|..+.+++. +   .+||++|+...  ......
T Consensus        10 r~~~~~~~~~~~iyv~GG~~-~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~---~~lyv~GG~~~~~~~~~~~   84 (357)
T 2uvk_A           10 FKSGTGAIDNDTVYIGLGSA-GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-D---GNLYVFGGIGKNSEGLTQV   84 (357)
T ss_dssp             CCSCEEEEETTEEEEECGGG-TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-T---TEEEEECCEEECTTSCEEE
T ss_pred             ccceEEEEECCEEEEEeCcC-CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-C---CEEEEEcCCCCCCCcccee
Confidence            33444555588888887644 2479999998  59999999999 78877654433 3   38999988511  111123


Q ss_pred             ccceeEEEcccCCCCCcccccCCCC-CcccCCCCCeEEECCEEEEEecC-------------------------------
Q 045071          234 NLSSESFHIDAGGFFSLWGTTSSLP-RLCSLESGRMVQVNGKFYCMNYS-------------------------------  281 (453)
Q Consensus       234 ~~~~evyds~~~~~~~~W~~~~~~p-~~~~~~~~~~v~~~G~lY~~~~~-------------------------------  281 (453)
                      ...+++||+.+    ++|+.+.+++ .  ......++.++|+||++++.                               
T Consensus        85 ~~~v~~yd~~~----~~W~~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (357)
T 2uvk_A           85 FNDVHKYNPKT----NSWVKLMSHAPM--GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD  158 (357)
T ss_dssp             CCCEEEEETTT----TEEEECSCCCSS--CCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             eccEEEEeCCC----CcEEECCCCCCc--ccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence            45789999999    9999998876 3  23334467799999999763                               


Q ss_pred             --------CCEEEEEECCCCcEEEeecCCccccCC-CceeeeCCeEEEEEEEeccCCCCCCcEEEEEee--cCCCCeEEE
Q 045071          282 --------PFSVLAYDISANAWFNIQAPMRRFLRS-PSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQ--ACGTLWAEI  350 (453)
Q Consensus       282 --------~~~i~~yD~~~~~W~~i~~p~~~~~~~-~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld--~~~~~W~~v  350 (453)
                              ...+.+||+.+++|+.+. ++|..... +.++..+++||++|+.....   ...-++|.++  +.+++|+++
T Consensus       159 ~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~  234 (357)
T 2uvk_A          159 KKAEDYFFNKFLLSFDPSTQQWSYAG-ESPWYGTAGAAVVNKGDKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKL  234 (357)
T ss_dssp             SCGGGGCCCCEEEEEETTTTEEEEEE-ECSSCCCBSCEEEEETTEEEEECCEEETT---EECCCEEEEECC---CEEEEC
T ss_pred             ccccccCCcccEEEEeCCCCcEEECC-CCCCCCcccccEEEECCEEEEEeeecCCC---cccCceEEEEecCCCCcEEec
Confidence                    158999999999999983 44433333 57788999999999865431   1122455555  478999999


Q ss_pred             eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC----------------------CeEEEEECCCCceEEcCCCCCc
Q 045071          351 ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS----------------------DKALLFDLCMKSWQWIPRCPYV  408 (453)
Q Consensus       351 ~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~----------------------~~v~~Yd~~~~~W~~l~~~p~~  408 (453)
                      ..||...        ......++..++.||+.+...                      ..+.+||+++++|+.++.+|..
T Consensus       235 ~~~~~~~--------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  306 (357)
T 2uvk_A          235 APVSSPD--------GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG  306 (357)
T ss_dssp             CCSSTTT--------CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC
T ss_pred             CCCCCCc--------ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC
Confidence            8886421        112233566789999986420                      3688999999999999888865


Q ss_pred             CC
Q 045071          409 QA  410 (453)
Q Consensus       409 ~~  410 (453)
                      +.
T Consensus       307 r~  308 (357)
T 2uvk_A          307 RA  308 (357)
T ss_dssp             CB
T ss_pred             cc
Confidence            44

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.77  E-value=2e-17  Score=158.48  Aligned_cols=203  Identities=12%  Similarity=0.070  Sum_probs=148.4

Q ss_pred             ceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecC------CCCeeEEEEcCcccceecCCCCCCCCCcceEEEEE
Q 045071          139 GYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDH------AGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKV  212 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~------~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~  212 (453)
                      ...||+.+++|..++....|+..+.++..+|.|++.++.      .....++++||.+++|..+++++.+|..+.+.. .
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~  147 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-H  147 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-E
Confidence            468999999999887433455455566678888887762      223579999999999999999998887765443 3


Q ss_pred             cCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC-----CEEEE
Q 045071          213 TPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP-----FSVLA  287 (453)
Q Consensus       213 ~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~  287 (453)
                      +   .+|+++|+.....  .....+++||+.+    ++|+.++++|..  .....++.++|+||++++..     ..+.+
T Consensus       148 ~---~~iyv~GG~~~~~--~~~~~~~~yd~~~----~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  216 (315)
T 4asc_A          148 M---DLVYVIGGKGSDR--KCLNKMCVYDPKK----FEWKELAPMQTA--RSLFGATVHDGRIIVAAGVTDTGLTSSAEV  216 (315)
T ss_dssp             T---TEEEEECCBCTTS--CBCCCEEEEETTT----TEEEECCCCSSC--CBSCEEEEETTEEEEEEEECSSSEEEEEEE
T ss_pred             C---CEEEEEeCCCCCC--cccceEEEEeCCC----CeEEECCCCCCc--hhceEEEEECCEEEEEeccCCCCccceEEE
Confidence            3   2899998852111  1345789999999    999999988753  23355788999999997532     37899


Q ss_pred             EECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCC--CC---CCcEEEEEeecCCCCeEEEeecC
Q 045071          288 YDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKL--NV---PKSLRLWSLQACGTLWAEIERMP  354 (453)
Q Consensus       288 yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~--~~---~~~i~vw~ld~~~~~W~~v~~mp  354 (453)
                      ||+.+++|+.+. ++|..+..+.++..+|+||++|+......  ..   ...-.+|.+|..+++|+++...|
T Consensus       217 yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~  287 (315)
T 4asc_A          217 YSITDNKWAPFE-AFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI  287 (315)
T ss_dssp             EETTTTEEEEEC-CCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCS
T ss_pred             EECCCCeEEECC-CCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCC
Confidence            999999999984 45555556677889999999999753100  00   11237899999999999984443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.73  E-value=6e-17  Score=155.42  Aligned_cols=199  Identities=12%  Similarity=0.108  Sum_probs=144.6

Q ss_pred             ceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCC-----CCeeEEEEcCcccceecCCCCCCCCCcceEEEEEc
Q 045071          139 GYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA-----GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVT  213 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~-----~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~  213 (453)
                      ...||+.+++|..++....++..+.++..+|.|++.++..     ....++++||.+++|..+++++.+|..+.+.. .+
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~  158 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN  158 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC
Confidence            4679999999999874334555555666688888776532     13468999999999999999998887655433 33


Q ss_pred             CCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEEEEE
Q 045071          214 PTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSVLAY  288 (453)
Q Consensus       214 ~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~y  288 (453)
                         .+||++|+.....  .....+++||..+    ++|+.++++|..+  ....++.++|+||++++.     ...+.+|
T Consensus       159 ---~~iyv~GG~~~~~--~~~~~~~~yd~~~----~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y  227 (318)
T 2woz_A          159 ---GMIYCLGGKTDDK--KCTNRVFIYNPKK----GDWKDLAPMKTPR--SMFGVAIHKGKIVIAGGVTEDGLSASVEAF  227 (318)
T ss_dssp             ---TEEEEECCEESSS--CBCCCEEEEETTT----TEEEEECCCSSCC--BSCEEEEETTEEEEEEEEETTEEEEEEEEE
T ss_pred             ---CEEEEEcCCCCCC--CccceEEEEcCCC----CEEEECCCCCCCc--ccceEEEECCEEEEEcCcCCCCccceEEEE
Confidence               3899998742111  1245679999999    9999998887532  335578899999999752     2468999


Q ss_pred             ECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccC-----CCCCCcEEEEEeecCCCCeEEE
Q 045071          289 DISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSK-----LNVPKSLRLWSLQACGTLWAEI  350 (453)
Q Consensus       289 D~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~-----~~~~~~i~vw~ld~~~~~W~~v  350 (453)
                      |+++++|+.+. ++|..+..+.++..+|+||++|+.....     +.....-.+|.+|..+++|+++
T Consensus       228 d~~~~~W~~~~-~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          228 DLKTNKWEVMT-EFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             ETTTCCEEECC-CCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             ECCCCeEEECC-CCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            99999999883 4554455567788999999999864311     0001123789999999999998

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.64  E-value=1.4e-14  Score=153.37  Aligned_cols=222  Identities=10%  Similarity=0.066  Sum_probs=151.4

Q ss_pred             CCeeeeecCceEEEEecCC--CCeeEEEEcCcccceecCC-C-----CCCCCCcceEEEEE-cCCceEEEEEccCCCCcc
Q 045071          160 EFSPASSSGGLVCWVSDHA--GAKTLILCNPVTGSLSQLP-P-----TLRPRLFPSIGLKV-TPTAVDVTVAGDDLISPY  230 (453)
Q Consensus       160 ~~~~~~s~~Gll~~~~~~~--~~~~~~v~NP~T~~w~~LP-~-----~~~~r~~~~~~~~~-~~~~ykvv~~g~~~~~~~  230 (453)
                      .+..+++.++.|++.|+..  ....++++||.+++|..++ +     ++.+|..+.++... +   .+||++||......
T Consensus       389 r~g~~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~---~~lyv~GG~~~~~~  465 (695)
T 2zwa_A          389 KFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN---NQLLLIGGRKAPHQ  465 (695)
T ss_dssp             BSCEEEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT---TEEEEECCBSSTTC
T ss_pred             ceeEEEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC---CEEEEEcCCCCCCC
Confidence            3444444677788777642  2347899999999999998 5     56677766544331 3   37999998643211


Q ss_pred             cccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE-CCEEEEEecCC--CEEEEEECCCCcEEEeec--CCccc
Q 045071          231 AVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV-NGKFYCMNYSP--FSVLAYDISANAWFNIQA--PMRRF  305 (453)
Q Consensus       231 ~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~-~G~lY~~~~~~--~~i~~yD~~~~~W~~i~~--p~~~~  305 (453)
                        ....+++||..+    ++|+.++++|..+  ..+.++.+ +|+||++++..  ..+.+||+.+++|+.+..  ++|..
T Consensus       466 --~~~dv~~yd~~t----~~W~~~~~~p~~R--~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~  537 (695)
T 2zwa_A          466 --GLSDNWIFDMKT----REWSMIKSLSHTR--FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN  537 (695)
T ss_dssp             --BCCCCEEEETTT----TEEEECCCCSBCC--BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS
T ss_pred             --ccccEEEEeCCC----CcEEECCCCCCCc--ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc
Confidence              235689999999    9999999888632  33456665 99999997642  169999999999998853  13433


Q ss_pred             cCCCceeeeC---CeEEEEEEEeccCCCCCCcEEEEEeecCCCC------eEEEeecCHHHHHHhhcccCCCcEEEEeeC
Q 045071          306 LRSPSLLDSN---GKLILVAAVEKSKLNVPKSLRLWSLQACGTL------WAEIERMPQQLYAQFAEIEAGNGFDTIGHG  376 (453)
Q Consensus       306 ~~~~~lv~~~---g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~------W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g  376 (453)
                      +..+..+.++   |+||++||......  ...-.+|.+|..++.      |+++..+|.         ..+....++..+
T Consensus       538 r~~~~a~v~~~~~~~iyv~GG~~~~~~--~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~---------~~R~~~~~~~~~  606 (695)
T 2zwa_A          538 SLVSAGLEFDPVSKQGIILGGGFMDQT--TVSDKAIIFKYDAENATEPITVIKKLQHPL---------FQRYGSQIKYIT  606 (695)
T ss_dssp             CCBSCEEEEETTTTEEEEECCBCTTSS--CBCCEEEEEEECTTCSSCCEEEEEEEECGG---------GCCBSCEEEEEE
T ss_pred             ccceeEEEEeCCCCEEEEECCcCCCCC--eeeCcEEEEEccCCccccceEEEEcCCCCC---------CCcccceEEEeC
Confidence            4444444545   89999998643210  112268888888888      899888652         011233444556


Q ss_pred             -CEEEEEEcC--------CCeEEEEECCCCceEEcC
Q 045071          377 -EFIVIVIRG--------SDKALLFDLCMKSWQWIP  403 (453)
Q Consensus       377 -~~I~l~~~~--------~~~v~~Yd~~~~~W~~l~  403 (453)
                       +.||+.++.        ...+.+||+++++|+.++
T Consensus       607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  642 (695)
T 2zwa_A          607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP  642 (695)
T ss_dssp             TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred             CCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence             899998652        467999999999999653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.64  E-value=9e-15  Score=154.26  Aligned_cols=247  Identities=11%  Similarity=0.061  Sum_probs=162.0

Q ss_pred             cceeeeCCCCCeEecc-CCCCCCCCeeeee-cCceEEEEecCCC---------CeeEEEEcCcccceecCCCCCCCCCcc
Q 045071          138 EGYLFDPHELSWYRIS-FALVPSEFSPASS-SGGLVCWVSDHAG---------AKTLILCNPVTGSLSQLPPTLRPRLFP  206 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~-l~~lp~~~~~~~s-~~Gll~~~~~~~~---------~~~~~v~NP~T~~w~~LP~~~~~r~~~  206 (453)
                      .+..|||..++|..+. +|..  ....... .+|.|++.++...         ...+.+|||.|++|..++.++.+|...
T Consensus       167 ~~~~~dp~~~~W~~~~~~P~~--~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~  244 (656)
T 1k3i_A          167 SYTAPQPGLGRWGPTIDLPIV--PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF  244 (656)
T ss_dssp             CCCCCCTTSCEEEEEEECSSC--CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred             ccccCCCCCCeeeeeccCCCC--ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence            3568999999999765 4432  2332223 2788887764321         236889999999999999887766544


Q ss_pred             eEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE-CCEEEEEecC----
Q 045071          207 SIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV-NGKFYCMNYS----  281 (453)
Q Consensus       207 ~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~-~G~lY~~~~~----  281 (453)
                      ..+.++.. ..+||++|+...       ..+++||+.+    +.|+.+.+|+..+.  ...++++ +|+||++++.    
T Consensus       245 ~~~~~~~~-~g~lyv~GG~~~-------~~v~~yd~~t----~~W~~~~~~~~~R~--~~s~~~~~dg~iyv~GG~~~~~  310 (656)
T 1k3i_A          245 CPGISMDG-NGQIVVTGGNDA-------KKTSLYDSSS----DSWIPGPDMQVARG--YQSSATMSDGRVFTIGGSWSGG  310 (656)
T ss_dssp             SCEEEECT-TSCEEEECSSST-------TCEEEEEGGG----TEEEECCCCSSCCS--SCEEEECTTSCEEEECCCCCSS
T ss_pred             cccccCCC-CCCEEEeCCCCC-------CceEEecCcC----CceeECCCCCcccc--ccceEEecCCeEEEEeCcccCC
Confidence            32333211 137999988532       2579999999    99999988876332  2445777 9999999872    


Q ss_pred             --CCEEEEEECCCCcEEEee----cCCcccc-------------------------------------------------
Q 045071          282 --PFSVLAYDISANAWFNIQ----APMRRFL-------------------------------------------------  306 (453)
Q Consensus       282 --~~~i~~yD~~~~~W~~i~----~p~~~~~-------------------------------------------------  306 (453)
                        ...+.+||+.+++|+.++    .|++...                                                 
T Consensus       311 ~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~  390 (656)
T 1k3i_A          311 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS  390 (656)
T ss_dssp             SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred             cccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc
Confidence              257899999999999873    2322110                                                 


Q ss_pred             --------CCCcee---eeCCeEEEEEEEeccC-CCCC-CcEEEEEeecCCCCeEEEe--ecCHHHHHHhhcccCCCcEE
Q 045071          307 --------RSPSLL---DSNGKLILVAAVEKSK-LNVP-KSLRLWSLQACGTLWAEIE--RMPQQLYAQFAEIEAGNGFD  371 (453)
Q Consensus       307 --------~~~~lv---~~~g~L~vv~~~~~~~-~~~~-~~i~vw~ld~~~~~W~~v~--~mp~~~~~~~~~~~~~~~~~  371 (453)
                              .....+   ..+|+||++|+..... .... ....|+.+|+.++.|.++.  .||..          +....
T Consensus       391 ~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~----------R~~~~  460 (656)
T 1k3i_A          391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA----------RTFHT  460 (656)
T ss_dssp             TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC----------CBSCE
T ss_pred             ccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC----------cccCC
Confidence                    001111   2479999999853210 0011 1235777888889999986  77752          11223


Q ss_pred             EEee-CCEEEEEEcC-----------CCeEEEEECCCCceEEcCCCCCcCC
Q 045071          372 TIGH-GEFIVIVIRG-----------SDKALLFDLCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       372 ~~~~-g~~I~l~~~~-----------~~~v~~Yd~~~~~W~~l~~~p~~~~  410 (453)
                      ++.. ++.||+.+..           ...+.+||+++++|+.++.++..+.
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~  511 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV  511 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred             eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc
Confidence            3333 7788887542           2578999999999999987776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.57  E-value=7.9e-14  Score=147.61  Aligned_cols=228  Identities=10%  Similarity=0.033  Sum_probs=149.8

Q ss_pred             cceeeeCCCCCeEeccCC------CCCCCCeeeeec--CceEEEEecCCC----CeeEEEEcCcccceecCCCCCCCCCc
Q 045071          138 EGYLFDPHELSWYRISFA------LVPSEFSPASSS--GGLVCWVSDHAG----AKTLILCNPVTGSLSQLPPTLRPRLF  205 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~------~lp~~~~~~~s~--~Gll~~~~~~~~----~~~~~v~NP~T~~w~~LP~~~~~r~~  205 (453)
                      ....||+.+++|..++.+      ..++..+.++..  +|.|++.|+...    ...+++|||.+++|..+++++.+|..
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~  492 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR  492 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc
Confidence            457899999999988732      234444555555  888888776422    35789999999999999999998887


Q ss_pred             ceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCC---CCCcccCCCCCeEEEC---CEEEEEe
Q 045071          206 PSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSS---LPRLCSLESGRMVQVN---GKFYCMN  279 (453)
Q Consensus       206 ~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~---~p~~~~~~~~~~v~~~---G~lY~~~  279 (453)
                      +.+++..+   .+||++||.....      .+++||..+    +.|+.+..   +|..  ...+.+++++   |++|+++
T Consensus       493 h~~~~~~~---~~iyv~GG~~~~~------~v~~yd~~t----~~W~~~~~~g~~p~~--r~~~~a~v~~~~~~~iyv~G  557 (695)
T 2zwa_A          493 HSACSLPD---GNVLILGGVTEGP------AMLLYNVTE----EIFKDVTPKDEFFQN--SLVSAGLEFDPVSKQGIILG  557 (695)
T ss_dssp             CEEEECTT---SCEEEECCBCSSC------SEEEEETTT----TEEEECCCSSGGGGS--CCBSCEEEEETTTTEEEEEC
T ss_pred             ceEEEEcC---CEEEEECCCCCCC------CEEEEECCC----CceEEccCCCCCCCc--ccceeEEEEeCCCCEEEEEC
Confidence            65444323   3899998853221      679999999    99999875   5432  2224446666   8999997


Q ss_pred             cC-------CCEEEEEECCCCc------EEEeecCCccccCCCceeeeC-CeEEEEEEEeccCCCCCCcEEEEEeecCCC
Q 045071          280 YS-------PFSVLAYDISANA------WFNIQAPMRRFLRSPSLLDSN-GKLILVAAVEKSKLNVPKSLRLWSLQACGT  345 (453)
Q Consensus       280 ~~-------~~~i~~yD~~~~~------W~~i~~p~~~~~~~~~lv~~~-g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~  345 (453)
                      +.       ...+.+||+.+++      |+.+...++..+..+.++..+ |+||++||...... ....-.||.||..++
T Consensus       558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGL-FDRTNSIISLDPLSE  636 (695)
T ss_dssp             CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCC-CCTTTSEEEEETTTT
T ss_pred             CcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCC-CCCCCeEEEEECCCC
Confidence            54       2579999999999      888744112334455667777 99999998643210 001226788888899


Q ss_pred             CeEEEeecCHHHHHHhhcccCCCcEEEEeeCC-EEEEEEc
Q 045071          346 LWAEIERMPQQLYAQFAEIEAGNGFDTIGHGE-FIVIVIR  384 (453)
Q Consensus       346 ~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~-~I~l~~~  384 (453)
                      +|+. ..+|......-..  ...+..++..++ .||+.++
T Consensus       637 ~W~~-~~~p~~~~~~~~p--~~~gh~~~~~~~g~i~v~GG  673 (695)
T 2zwa_A          637 TLTS-IPISRRIWEDHSL--MLAGFSLVSTSMGTIHIIGG  673 (695)
T ss_dssp             EEEE-CCCCHHHHHHSCC--CCSSCEEECC---CEEEECC
T ss_pred             eEEE-eeccccccCCCCc--cceeeeEEEeCCCEEEEEeC
Confidence            9984 4666543211101  112233344444 7777654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.45  E-value=2.1e-12  Score=136.15  Aligned_cols=228  Identities=10%  Similarity=0.025  Sum_probs=145.6

Q ss_pred             ceeeeCCCCCeEeccCCCCCCC-Ce--eeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCC
Q 045071          139 GYLFDPHELSWYRISFALVPSE-FS--PASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPT  215 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l~~lp~~-~~--~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~  215 (453)
                      ...||+.+++|..++....++. ++  .+...+|.|++.++... ..+.+|||.+++|..+++|+.+|..+.+.+..+  
T Consensus       221 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d--  297 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--  297 (656)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--
T ss_pred             EEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC-CceEEecCcCCceeECCCCCccccccceEEecC--
Confidence            4689999999998763223333 32  23356888888887443 379999999999999999999988765443313  


Q ss_pred             ceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccC-----CCCCccc----------------------------
Q 045071          216 AVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTS-----SLPRLCS----------------------------  262 (453)
Q Consensus       216 ~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~-----~~p~~~~----------------------------  262 (453)
                       .|||++|+.....  ......|+||+.+    ++|+.+.     +++....                            
T Consensus       298 -g~iyv~GG~~~~~--~~~~~~e~yd~~t----~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~  370 (656)
T 1k3i_A          298 -GRVFTIGGSWSGG--VFEKNGEVYSPSS----KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTA  370 (656)
T ss_dssp             -SCEEEECCCCCSS--SCCCCEEEEETTT----TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSE
T ss_pred             -CeEEEEeCcccCC--cccccceEeCCCC----CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccc
Confidence             3899998832111  1245679999999    9999862     2321100                            


Q ss_pred             ---------------------------CCCCCeEE---ECCEEEEEecCC--------C---EEEEEECCCCcEEEee-c
Q 045071          263 ---------------------------LESGRMVQ---VNGKFYCMNYSP--------F---SVLAYDISANAWFNIQ-A  300 (453)
Q Consensus       263 ---------------------------~~~~~~v~---~~G~lY~~~~~~--------~---~i~~yD~~~~~W~~i~-~  300 (453)
                                                 .....++.   .+|+||++++..        .   .+..||+.+++|..+. .
T Consensus       371 v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~  450 (656)
T 1k3i_A          371 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN  450 (656)
T ss_dssp             EEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT
T ss_pred             eeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC
Confidence                                       00011222   389999997631        2   6889999999999874 3


Q ss_pred             CCccccCCCceeee-CCeEEEEEEEeccC-C-CCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCC
Q 045071          301 PMRRFLRSPSLLDS-NGKLILVAAVEKSK-L-NVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGE  377 (453)
Q Consensus       301 p~~~~~~~~~lv~~-~g~L~vv~~~~~~~-~-~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~  377 (453)
                      ++|..+..+..+.. +|+||++|+..... . .....-.++.+|+.+++|+++..|+...        ......++..++
T Consensus       451 ~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R--------~~hs~a~ll~dg  522 (656)
T 1k3i_A          451 GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVR--------VYHSISLLLPDG  522 (656)
T ss_dssp             CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCC--------CTTEEEEECTTS
T ss_pred             CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcc--------ccccHhhcCCCc
Confidence            55554455555665 99999999864321 0 0011225566677789999988876411        111222222377


Q ss_pred             EEEEEEc
Q 045071          378 FIVIVIR  384 (453)
Q Consensus       378 ~I~l~~~  384 (453)
                      .||+.+.
T Consensus       523 ~v~v~GG  529 (656)
T 1k3i_A          523 RVFNGGG  529 (656)
T ss_dssp             CEEEEEC
T ss_pred             EEEecCC
Confidence            7888765

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.99  E-value=1.4e-10  Score=79.26  Aligned_cols=46  Identities=33%  Similarity=0.689  Sum_probs=39.3

Q ss_pred             ccccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchhh
Q 045071           48 SRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLEL   93 (453)
Q Consensus        48 ~~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~   93 (453)
                      ...|..||+|++.+||++||..++.+++.|||+|+.++.++.|.+.
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~   51 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHh
Confidence            4568999999999999999999999999999999999998877553

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.78  E-value=1.2e-09  Score=101.30  Aligned_cols=56  Identities=30%  Similarity=0.388  Sum_probs=46.8

Q ss_pred             CCccccccccCCChHHHHHHHHhcCChhhhh-hhhhccccccccccCccchhhhhcc
Q 045071           42 ACPWMDSRIWSKLPQRLLDRVLAFLPPPAFF-RARAVCKRWYGLLFSNSFLELYIHV   97 (453)
Q Consensus        42 ~~~~~~~~~w~~LP~dll~~IL~rLp~~~l~-r~r~VCK~W~~~i~s~~F~~~~~~~   97 (453)
                      ..+.|+......||+|||.+||++||.++|+ ||++|||+|++++.++.|.+.+.+.
T Consensus        42 ~~~~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~   98 (297)
T 2e31_A           42 EEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQ   98 (297)
T ss_dssp             -----CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHH
T ss_pred             cCccccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhc
Confidence            3445555678899999999999999999999 9999999999999999998887654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.50  E-value=3.2e-05  Score=76.67  Aligned_cols=47  Identities=30%  Similarity=0.429  Sum_probs=42.4

Q ss_pred             ccccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchhhh
Q 045071           48 SRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELY   94 (453)
Q Consensus        48 ~~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~~   94 (453)
                      ...+..||+|++.+||+.|+.++|++++.|||+|+.++.++.+.+..
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~   62 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK   62 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhh
Confidence            35678999999999999999999999999999999999988876654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.46  E-value=2.5e-05  Score=77.68  Aligned_cols=44  Identities=14%  Similarity=0.344  Sum_probs=39.4

Q ss_pred             ccccCCChHHHHHHHHhcCChhhhhhhhhccccccccccC-ccch
Q 045071           48 SRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFS-NSFL   91 (453)
Q Consensus        48 ~~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s-~~F~   91 (453)
                      ...+..||+|++.+||+.|+.++|++++.|||+|+.++.+ +.+.
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w   56 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW   56 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHH
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            3567889999999999999999999999999999999987 5543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.37  E-value=5.4e-06  Score=82.15  Aligned_cols=48  Identities=23%  Similarity=0.543  Sum_probs=42.0

Q ss_pred             cccccCCChHH----HHHHHHhcCChhhhhhhhhccccccccccCccchhhh
Q 045071           47 DSRIWSKLPQR----LLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELY   94 (453)
Q Consensus        47 ~~~~w~~LP~d----ll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~~   94 (453)
                      .......||+|    |+.+||+.|+..+|+++++|||+|+.++.++.+.+..
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~   58 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL   58 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            34567889999    9999999999999999999999999999988765543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.62  E-value=9e-06  Score=74.58  Aligned_cols=49  Identities=14%  Similarity=0.299  Sum_probs=43.8

Q ss_pred             cccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchhhhhcc
Q 045071           49 RIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHV   97 (453)
Q Consensus        49 ~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~~~~~   97 (453)
                      ..|.+||+|++.+||+.|+.++|+++.+|||+||.+..++...+.+..+
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~r   51 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLR   51 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHS
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhc
Confidence            3467899999999999999999999999999999999999887766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.52  E-value=2.7e-05  Score=74.21  Aligned_cols=44  Identities=34%  Similarity=0.717  Sum_probs=39.5

Q ss_pred             ccccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccch
Q 045071           48 SRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFL   91 (453)
Q Consensus        48 ~~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~   91 (453)
                      ...|.+||+|++.+|+.+|+..++.+++.|||+|+.+..++...
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~   49 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTS
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhh
Confidence            46799999999999999999999999999999999998776543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.14  E-value=0.00011  Score=75.86  Aligned_cols=39  Identities=31%  Similarity=0.665  Sum_probs=29.3

Q ss_pred             ccccccCCChHHHHHHHHhcCC-hhhhhhhhhcccccccc
Q 045071           46 MDSRIWSKLPQRLLDRVLAFLP-PPAFFRARAVCKRWYGL   84 (453)
Q Consensus        46 ~~~~~w~~LP~dll~~IL~rLp-~~~l~r~r~VCK~W~~~   84 (453)
                      |....|++||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus         1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4457899999999999999999 99999999999999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.83  E-value=0.16  Score=47.64  Aligned_cols=226  Identities=10%  Similarity=0.015  Sum_probs=117.0

Q ss_pred             ceeeeCCCCCeEecc-C---C-CCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccce-ecCCCCCCCCCcceEEEEE
Q 045071          139 GYLFDPHELSWYRIS-F---A-LVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSL-SQLPPTLRPRLFPSIGLKV  212 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~-l---~-~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w-~~LP~~~~~r~~~~~~~~~  212 (453)
                      ...+|+.++++.+-- .   . .+.....-++..++.+++....  ...+.++|+.|.+. ..++....+     .++..
T Consensus        19 l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~--~~~v~viD~~t~~~~~~i~~~~~p-----~~i~~   91 (328)
T 3dsm_A           19 LSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN--SHVIFAIDINTFKEVGRITGFTSP-----RYIHF   91 (328)
T ss_dssp             EEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG--GTEEEEEETTTCCEEEEEECCSSE-----EEEEE
T ss_pred             EEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC--CCEEEEEECcccEEEEEcCCCCCC-----cEEEE
Confidence            357888877664310 0   0 0111112233456777776543  34789999998876 445432221     13444


Q ss_pred             cCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCc--ccCCCCCeEEECCEEEEEec-CCCEEEEEE
Q 045071          213 TPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRL--CSLESGRMVQVNGKFYCMNY-SPFSVLAYD  289 (453)
Q Consensus       213 ~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~--~~~~~~~~v~~~G~lY~~~~-~~~~i~~yD  289 (453)
                      +++. ++|+....        .....++|..+    ++-...-..+..  ........++.++++|+... ....|.++|
T Consensus        92 ~~~g-~lyv~~~~--------~~~v~~iD~~t----~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           92 LSDE-KAYVTQIW--------DYRIFIINPKT----YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKID  158 (328)
T ss_dssp             EETT-EEEEEEBS--------CSEEEEEETTT----TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEE
T ss_pred             eCCC-eEEEEECC--------CCeEEEEECCC----CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEE
Confidence            3333 77776531        12446777776    332211111110  00011234557899999875 357899999


Q ss_pred             CCCCcEEE-eecCCccccCCCcee-eeCCeEEEEEEEeccCCC-CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccC
Q 045071          290 ISANAWFN-IQAPMRRFLRSPSLL-DSNGKLILVAAVEKSKLN-VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEA  366 (453)
Q Consensus       290 ~~~~~W~~-i~~p~~~~~~~~~lv-~~~g~L~vv~~~~~~~~~-~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~  366 (453)
                      +++.+... +....    ....++ .-+|++|+++........ ....-.|+++|..+.+.++.-.++..        ..
T Consensus       159 ~~t~~~~~~i~~g~----~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g--------~~  226 (328)
T 3dsm_A          159 TETDKVVDELTIGI----QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG--------DW  226 (328)
T ss_dssp             TTTTEEEEEEECSS----CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT--------CC
T ss_pred             CCCCeEEEEEEcCC----CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC--------CC
Confidence            99987543 32211    111232 346898876642210000 00012678888766655443334320        00


Q ss_pred             CCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          367 GNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       367 ~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      ...+.....++.+|+...   .+.+||.++.+.
T Consensus       227 p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~  256 (328)
T 3dsm_A          227 PSEVQLNGTRDTLYWINN---DIWRMPVEADRV  256 (328)
T ss_dssp             CEEEEECTTSCEEEEESS---SEEEEETTCSSC
T ss_pred             ceeEEEecCCCEEEEEcc---EEEEEECCCCce
Confidence            112333335788988643   899999998775

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.34  E-value=0.11  Score=48.66  Aligned_cols=239  Identities=14%  Similarity=0.141  Sum_probs=111.5

Q ss_pred             eeeeCCCCCeEeccC-CCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceE
Q 045071          140 YLFDPHELSWYRISF-ALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVD  218 (453)
Q Consensus       140 ~~fdp~~~~w~~l~l-~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~yk  218 (453)
                      +.+|+.++++..+.. ........+.-+.+|-|++.........+.+++..+++.+.+.........+ .++.+++++-.
T Consensus        21 ~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p-~~~a~spdg~~   99 (347)
T 3hfq_A           21 GTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP-AYVAVDEARQL   99 (347)
T ss_dssp             EEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC-SEEEEETTTTE
T ss_pred             EEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC-EEEEECCCCCE
Confidence            456766666544321 1111112233345666555443222357889998777765544321111111 13444444445


Q ss_pred             EEEEccCCCCcccccccceeEEEcccCCCCCcccccCCC------CCcccCCC-CCeEE--ECCEEEEEecCCCEEEEEE
Q 045071          219 VTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSL------PRLCSLES-GRMVQ--VNGKFYCMNYSPFSVLAYD  289 (453)
Q Consensus       219 vv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~------p~~~~~~~-~~~v~--~~G~lY~~~~~~~~i~~yD  289 (453)
                      ++++....        ....+|+....   +..+.+...      |....... ...+.  -+|++|+.......|..||
T Consensus       100 l~~~~~~~--------~~v~v~~~~~~---g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A          100 VYSANYHK--------GTAEVMKIAAD---GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN  168 (347)
T ss_dssp             EEEEETTT--------TEEEEEEECTT---SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             EEEEeCCC--------CEEEEEEeCCC---CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence            66554221        23466665421   222221111      00000000 01122  2677787766557899999


Q ss_pred             CC-CCcEEEeec-CCccccCCC-ce-eeeCCe-EEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeec---CHHHHHHh
Q 045071          290 IS-ANAWFNIQA-PMRRFLRSP-SL-LDSNGK-LILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERM---PQQLYAQF  361 (453)
Q Consensus       290 ~~-~~~W~~i~~-p~~~~~~~~-~l-v~~~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~m---p~~~~~~~  361 (453)
                      +. +++...+.. ..+.. ..+ .+ +.-+|+ ||+++. .      ...+.+|.++..+++++.+..+   +..    +
T Consensus       169 ~~~~g~~~~~~~~~~~~g-~~p~~~~~spdg~~l~v~~~-~------~~~v~v~~~~~~~g~~~~~~~~~~~~~~----~  236 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAG-FGPRHLVFSPDGQYAFLAGE-L------SSQIASLKYDTQTGAFTQLGIVKTIPAD----Y  236 (347)
T ss_dssp             ECTTSCEEEEEEEECCTT-CCEEEEEECTTSSEEEEEET-T------TTEEEEEEEETTTTEEEEEEEEESSCTT----C
T ss_pred             ECCCCcEEEeeeEEcCCC-CCCceEEECCCCCEEEEEeC-C------CCEEEEEEecCCCCceEEeeeeeecCCC----C
Confidence            98 565544321 11111 111 12 223676 554331 1      2367899988756666554433   321    0


Q ss_pred             hcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCC-CceEEc
Q 045071          362 AEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCM-KSWQWI  402 (453)
Q Consensus       362 ~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~-~~W~~l  402 (453)
                      ........+.....|..||+.....+.+.+||+.. ++++.+
T Consensus       237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~  278 (347)
T 3hfq_A          237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI  278 (347)
T ss_dssp             CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred             CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence            00000011222335678888776678899999873 345444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.91  E-value=0.91  Score=40.75  Aligned_cols=189  Identities=12%  Similarity=0.077  Sum_probs=98.0

Q ss_pred             cCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCC
Q 045071          167 SGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGG  246 (453)
Q Consensus       167 ~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~  246 (453)
                      .+|.|++....  ...+.++++-++.-..+-..   ....-.++.+++..-++|++...        .....+++.+.  
T Consensus        46 ~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~---~~~~p~~ia~d~~~~~lyv~d~~--------~~~I~~~~~~g--  110 (267)
T 1npe_A           46 VDKVVYWTDIS--EPSIGRASLHGGEPTTIIRQ---DLGSPEGIALDHLGRTIFWTDSQ--------LDRIEVAKMDG--  110 (267)
T ss_dssp             TTTEEEEEETT--TTEEEEEESSSCCCEEEECT---TCCCEEEEEEETTTTEEEEEETT--------TTEEEEEETTS--
T ss_pred             CCCEEEEEECC--CCEEEEEecCCCCcEEEEEC---CCCCccEEEEEecCCeEEEEECC--------CCEEEEEEcCC--
Confidence            46777776543  34788888876543222111   11122356666544567776542        12446676654  


Q ss_pred             CCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeEE
Q 045071          247 FFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLI  319 (453)
Q Consensus       247 ~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~  319 (453)
                        ..-+.+.....  . .....++-  +|.+||....  ...|.+++++...-..+...   ....+ .++.  .+++||
T Consensus       111 --~~~~~~~~~~~--~-~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~---~~~~P~gia~d~~~~~ly  182 (267)
T 1npe_A          111 --TQRRVLFDTGL--V-NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---NLGLPNGLTFDAFSSQLC  182 (267)
T ss_dssp             --CSCEEEECSSC--S-SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---TCSCEEEEEEETTTTEEE
T ss_pred             --CCEEEEEECCC--C-CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC---CCCCCcEEEEcCCCCEEE
Confidence              22122211100  0 01223333  5899998754  35889999876544333211   11222 2332  257888


Q ss_pred             EEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          320 LVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       320 vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      +....  .     .  .|++++.....-..+..  .          ...+......++.+|+.....+.+.++|..+.+.
T Consensus       183 v~d~~--~-----~--~I~~~~~~g~~~~~~~~--~----------~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          183 WVDAG--T-----H--RAECLNPAQPGRRKVLE--G----------LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKE  241 (267)
T ss_dssp             EEETT--T-----T--EEEEEETTEEEEEEEEE--C----------CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEECC--C-----C--EEEEEecCCCceEEEec--C----------CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCc
Confidence            75531  1     1  56666654321111111  0          1123333345899999887778999999987654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.81  E-value=1.2  Score=41.46  Aligned_cols=183  Identities=7%  Similarity=-0.028  Sum_probs=95.2

Q ss_pred             CeeEEEEcCcccceecCC-C--CCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcc-cccC
Q 045071          180 AKTLILCNPVTGSLSQLP-P--TLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLW-GTTS  255 (453)
Q Consensus       180 ~~~~~v~NP~T~~w~~LP-~--~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W-~~~~  255 (453)
                      ...+.++||.|++...-- .  -..+-....-++..+.  -+++++...        .....++|..+    .+- ..+.
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~--------~~~v~viD~~t----~~~~~~i~   81 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNN--------SHVIFAIDINT----FKEVGRIT   81 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGG--------GTEEEEEETTT----CCEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcC--------CCEEEEEECcc----cEEEEEcC
Confidence            357899999998865311 0  0001011111333332  266666442        12457888877    332 1122


Q ss_pred             CCCCcccCCCCCeEE-ECCEEEEEecCCCEEEEEECCCCcEE-EeecCCcc-cc-CCCceeeeCCeEEEEEEEeccCCCC
Q 045071          256 SLPRLCSLESGRMVQ-VNGKFYCMNYSPFSVLAYDISANAWF-NIQAPMRR-FL-RSPSLLDSNGKLILVAAVEKSKLNV  331 (453)
Q Consensus       256 ~~p~~~~~~~~~~v~-~~G~lY~~~~~~~~i~~yD~~~~~W~-~i~~p~~~-~~-~~~~lv~~~g~L~vv~~~~~~~~~~  331 (453)
                      ....     ....++ -+|++|+.......|.++|+.+.+.. .++.+... .. ....++..+++||+... ...    
T Consensus        82 ~~~~-----p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-~~~----  151 (328)
T 3dsm_A           82 GFTS-----PRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW-SYQ----  151 (328)
T ss_dssp             CCSS-----EEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC-TTC----
T ss_pred             CCCC-----CcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC-CCC----
Confidence            1111     122344 68999998844579999999998754 33332200 00 11134447889987642 111    


Q ss_pred             CCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC----------CeEEEEECCCCceE
Q 045071          332 PKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS----------DKALLFDLCMKSWQ  400 (453)
Q Consensus       332 ~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~----------~~v~~Yd~~~~~W~  400 (453)
                       .  .|+.+|..+++..+.-....          ....+. +..++.+|+.....          ..+.++|.++.+..
T Consensus       152 -~--~v~viD~~t~~~~~~i~~g~----------~p~~i~-~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~  216 (328)
T 3dsm_A          152 -N--RILKIDTETDKVVDELTIGI----------QPTSLV-MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE  216 (328)
T ss_dssp             -C--EEEEEETTTTEEEEEEECSS----------CBCCCE-ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred             -C--EEEEEECCCCeEEEEEEcCC----------CccceE-EcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence             1  56677765554433222211          001222 22356688776543          68999999988765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.44  E-value=0.0036  Score=64.35  Aligned_cols=33  Identities=21%  Similarity=0.627  Sum_probs=31.3

Q ss_pred             CCChHHHHHHHHhcC-Chhhhhhhhhcccccccc
Q 045071           52 SKLPQRLLDRVLAFL-PPPAFFRARAVCKRWYGL   84 (453)
Q Consensus        52 ~~LP~dll~~IL~rL-p~~~l~r~r~VCK~W~~~   84 (453)
                      ++||||++.+||++| +.+++.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            579999999999999 899999999999999887

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.26  E-value=0.25  Score=44.21  Aligned_cols=109  Identities=11%  Similarity=0.094  Sum_probs=71.5

Q ss_pred             eEEECCEEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCC
Q 045071          268 MVQVNGKFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGT  345 (453)
Q Consensus       268 ~v~~~G~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~  345 (453)
                      ..+.++.+|.-++.  ...|..+|+++++-..- .+++.....-.+...+++||++..  +..       .+|++|.  .
T Consensus        26 L~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~~~~fgeGi~~~~~~ly~ltw--~~~-------~v~v~D~--~   93 (243)
T 3mbr_X           26 LFYLRGHLYESTGETGRSSVRKVDLETGRILQR-AEVPPPYFGAGIVAWRDRLIQLTW--RNH-------EGFVYDL--A   93 (243)
T ss_dssp             EEEETTEEEEEECCTTSCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEES--SSS-------EEEEEET--T
T ss_pred             EEEECCEEEEECCCCCCceEEEEECCCCCEEEE-EeCCCCcceeEEEEeCCEEEEEEe--eCC-------EEEEEEC--C
Confidence            45678899987654  35899999999876442 222222222245667899999753  221       7888885  4


Q ss_pred             CeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          346 LWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       346 ~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      ..+.+.+++-.          ..++.+...++.+|+... .+++.++|+++.+-
T Consensus        94 tl~~~~ti~~~----------~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~  136 (243)
T 3mbr_X           94 TLTPRARFRYP----------GEGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQ  136 (243)
T ss_dssp             TTEEEEEEECS----------SCCCEEEECSSCEEEECS-SSEEEEECTTTCCE
T ss_pred             cCcEEEEEeCC----------CCceEEeeCCCEEEEECC-CCeEEEEeCCCCeE
Confidence            45666666531          124555667788888764 78899999988543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.16  E-value=1.8  Score=39.14  Aligned_cols=187  Identities=11%  Similarity=-0.005  Sum_probs=100.0

Q ss_pred             EEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEE
Q 045071          209 GLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAY  288 (453)
Q Consensus       209 ~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~y  288 (453)
                      |+.++. . .+|...+..      ...+..++|.+++    +=...-.++.  ..........++++|.++.....+.+|
T Consensus        47 GL~~~~-~-~LyestG~~------g~S~v~~vD~~Tg----kv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           47 GFFYRN-G-YFYESTGLN------GRSSIRKVDIESG----KTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             EEEEET-T-EEEEEEEET------TEEEEEEECTTTC----CEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             eEEEEC-C-EEEEECCCC------CCceEEEEECCCC----cEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            565552 2 566655431      1235578888873    2222112332  111122456788999999877899999


Q ss_pred             ECCCCcE-EEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCC
Q 045071          289 DISANAW-FNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAG  367 (453)
Q Consensus       289 D~~~~~W-~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~  367 (453)
                      |+++.+- ..++.+.    ....+...+++||+..+  .+        +||.+|+.+.+=  +.+++.... .. ....-
T Consensus       113 D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdG--s~--------~i~~iDp~T~~v--~~~I~V~~~-g~-~~~~l  174 (262)
T 3nol_A          113 NIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDG--TP--------VLRFLDPESLTP--VRTITVTAH-GE-ELPEL  174 (262)
T ss_dssp             ETTTCCEEEEEECSS----CCCCEEECSSCEEECCS--SS--------EEEEECTTTCSE--EEEEECEET-TE-ECCCE
T ss_pred             ECccCcEEEEEECCC----CceEEecCCCEEEEECC--CC--------eEEEEcCCCCeE--EEEEEeccC-Cc-ccccc
Confidence            9998654 3444432    22345555677777442  11        789999865443  333322000 00 00000


Q ss_pred             CcEEEEeeCCEEEEEEcCCCeEEEEECCCCceE-EcCCCCCcCCCCCCCCCCCCCceeEEEEeccc
Q 045071          368 NGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQ-WIPRCPYVQANNCGGNYGDGEGELHGFAYEPR  432 (453)
Q Consensus       368 ~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~-~l~~~p~~~~~~~~~~~~~~~~~~~~~~f~P~  432 (453)
                      ..+.++  ++.||+.....+.|.+-|+++.+-. ++.--...+.... ...  .+..+.|++|.|.
T Consensus       175 NELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~-~~~--~~~vlNGIA~dp~  235 (262)
T 3nol_A          175 NELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP-LPS--PIDVLNGIAWDKE  235 (262)
T ss_dssp             EEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS-CCS--SCCCEEEEEEETT
T ss_pred             ceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc-ccC--cCCceEEEEEcCC
Confidence            113333  6789988777889999999998743 3321111110000 000  1235789999984

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.02  E-value=4.3  Score=42.99  Aligned_cols=188  Identities=10%  Similarity=0.055  Sum_probs=97.8

Q ss_pred             cCceEEEEecCCCCeeEEEEcCccc----c-eecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEE
Q 045071          167 SGGLVCWVSDHAGAKTLILCNPVTG----S-LSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFH  241 (453)
Q Consensus       167 ~~Gll~~~~~~~~~~~~~v~NP~T~----~-w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyd  241 (453)
                      ..|.||+....  ...+++.++-..    . ...+..    ....-.|++++...-+||++...        ...+++++
T Consensus       434 ~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~----~l~~P~GLAvD~~~~~LY~tD~~--------~~~I~v~~  499 (791)
T 3m0c_C          434 ASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISR----DIQAPDGLAVDWIHSNIYWTDSV--------LGTVSVAD  499 (791)
T ss_dssp             TTTEEEEEETT--TTEEEEEEC--------CEEEECS----SCSCCCEEEEETTTTEEEEEETT--------TTEEEEEE
T ss_pred             cCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEec----CCCCcceeeeeecCCcEEEEecC--------CCeEEEEe
Confidence            46777776543  235666665432    1 122211    01112266676555578887542        23456777


Q ss_pred             cccCCCCCcccccCCCCCcccCCCCCeEEE---CCEEEEEecCC-CEEEEEECCCCcEEEeecCCccccCCC-ceee--e
Q 045071          242 IDAGGFFSLWGTTSSLPRLCSLESGRMVQV---NGKFYCMNYSP-FSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--S  314 (453)
Q Consensus       242 s~~~~~~~~W~~~~~~p~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~  314 (453)
                      .+.    ..-+.+..-    .+.....+.+   +|.|||..... ..|.++++....-..+..   ..+..+ .|+.  .
T Consensus       500 ldG----~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~---~~l~~P~GLavD~~  568 (791)
T 3m0c_C          500 TKG----VKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLL  568 (791)
T ss_dssp             TTS----SSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---SSCSCEEEEEEETT
T ss_pred             CCC----CeEEEEEeC----CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe---CCCCCceEEEEecC
Confidence            665    333332210    0111123333   58999997543 689999998765544421   112223 2432  4


Q ss_pred             CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEEC
Q 045071          315 NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDL  394 (453)
Q Consensus       315 ~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~  394 (453)
                      +++||++..  +.     .  .|+.++.+...=..+..-...         ...++.....++.||++....+.|...|.
T Consensus       569 ~~~LYwaD~--~~-----~--~I~~~d~dG~~~~~v~~~~~~---------l~~P~glav~~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          569 SGRLYWVDS--KL-----H--SISSIDVNGGNRKTILEDEKR---------LAHPFSLAVFEDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             TTEEEEEET--TT-----T--EEEEEETTSCSCEEEEECTTT---------TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEeC--CC-----C--cEEEEecCCCceEEEecCCCc---------cCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence            789998652  21     1  566666543322223221110         01244444578899998877789999997


Q ss_pred             CCC
Q 045071          395 CMK  397 (453)
Q Consensus       395 ~~~  397 (453)
                      .++
T Consensus       631 ~tG  633 (791)
T 3m0c_C          631 LTG  633 (791)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.75  E-value=1.7  Score=38.75  Aligned_cols=188  Identities=11%  Similarity=0.117  Sum_probs=101.4

Q ss_pred             EEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEE
Q 045071          209 GLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAY  288 (453)
Q Consensus       209 ~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~y  288 (453)
                      |+.+++  -.+|...+..      ...+..++|.+++    +=.....++.  .......+..++++|.++.....+.+|
T Consensus        25 GL~~~~--~~LyestG~~------g~S~v~~vD~~tg----kv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           25 GLFYLR--GHLYESTGET------GRSSVRKVDLETG----RILQRAEVPP--PYFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEEEET--TEEEEEECCT------TSCEEEEEETTTC----CEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             cEEEEC--CEEEEECCCC------CCceEEEEECCCC----CEEEEEeCCC--CcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            666654  2566655432      1245678888883    3222223332  111123466789999999877899999


Q ss_pred             ECCCCcE-EEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCC
Q 045071          289 DISANAW-FNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAG  367 (453)
Q Consensus       289 D~~~~~W-~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~  367 (453)
                      |.++.+- ..++.+.    ....+...+++||+-.+  . .       +|+.+|+.+.+=  +.+++... ..+ ....-
T Consensus        91 D~~tl~~~~ti~~~~----~Gwglt~dg~~L~vSdg--s-~-------~l~~iDp~t~~~--~~~I~V~~-~g~-~~~~l  152 (243)
T 3mbr_X           91 DLATLTPRARFRYPG----EGWALTSDDSHLYMSDG--T-A-------VIRKLDPDTLQQ--VGSIKVTA-GGR-PLDNL  152 (243)
T ss_dssp             ETTTTEEEEEEECSS----CCCEEEECSSCEEEECS--S-S-------EEEEECTTTCCE--EEEEECEE-TTE-ECCCE
T ss_pred             ECCcCcEEEEEeCCC----CceEEeeCCCEEEEECC--C-C-------eEEEEeCCCCeE--EEEEEEcc-CCc-ccccc
Confidence            9998654 3344332    22345555677887443  1 1       788899865543  33332100 000 00000


Q ss_pred             CcEEEEeeCCEEEEEEcCCCeEEEEECCCCce-EEcCCCCCcCCCCCCCCCCCCCceeEEEEeccc
Q 045071          368 NGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW-QWIPRCPYVQANNCGGNYGDGEGELHGFAYEPR  432 (453)
Q Consensus       368 ~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W-~~l~~~p~~~~~~~~~~~~~~~~~~~~~~f~P~  432 (453)
                      ..+.+  .++.||......+.|.+-|+++.+- .++.--...+.....+  ...+..+.|++|.|.
T Consensus       153 NeLe~--~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~--~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          153 NELEW--VNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALT--DSTNDVLNGIAFDAE  214 (243)
T ss_dssp             EEEEE--ETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCC--CTTSSCEEEEEEETT
T ss_pred             eeeEE--eCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccccc--CCcCCceEEEEEcCC
Confidence            12333  3788998776688999999999864 2332111111100000  001236789999984

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.72  E-value=3.1  Score=39.82  Aligned_cols=188  Identities=13%  Similarity=0.055  Sum_probs=98.4

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccC
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAG  245 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~  245 (453)
                      ..+|.|++....  ...++++++-++....+-.....   .-.++.++...-+||++....        ...++++.+. 
T Consensus       125 ~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~~---~p~glavd~~~g~lY~~d~~~--------~~I~~~~~dg-  190 (386)
T 3v65_B          125 HRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGLE---SPGGLAVDWVHDKLYWTDSGT--------SRIEVANLDG-  190 (386)
T ss_dssp             TTTTEEEEEETT--TTEEEEEETTSCCEEEEECSSCS---CCCCEEEETTTTEEEEEETTT--------TEEEECBTTS-
T ss_pred             cCCCeEEEEeCC--CCcEEEEecCCCCcEEEEeCCCC---CccEEEEEeCCCeEEEEcCCC--------CeEEEEeCCC-
Confidence            357888877543  34788888887654433211110   112456665445777764421        2334554443 


Q ss_pred             CCCCcccccCCCCCcccCCC-CCeEEE--CCEEEEEecCC-CEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeE
Q 045071          246 GFFSLWGTTSSLPRLCSLES-GRMVQV--NGKFYCMNYSP-FSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKL  318 (453)
Q Consensus       246 ~~~~~W~~~~~~p~~~~~~~-~~~v~~--~G~lY~~~~~~-~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L  318 (453)
                         ..-+.+..-    .+.. ...++-  +|.+||..... ..|..+|+....-..+...   ....+ .|+.  .+++|
T Consensus       191 ---~~~~~l~~~----~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---~~~~PnGlavd~~~~~l  260 (386)
T 3v65_B          191 ---AHRKVLLWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---HLFWPNGLTIDYAGRRM  260 (386)
T ss_dssp             ---CSCEEEECS----SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---SCSCEEEEEEEGGGTEE
T ss_pred             ---CceEEeecC----CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---CCCCeeeEEEeCCCCEE
Confidence               221111110    0111 122332  68999997665 7899999987654443211   11222 2333  47899


Q ss_pred             EEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCC
Q 045071          319 ILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMK  397 (453)
Q Consensus       319 ~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~  397 (453)
                      |++..  ..     .  .|++++.+...-..+..-.           ...+......++.||+.....++|..+|..+.
T Consensus       261 Y~aD~--~~-----~--~I~~~d~dG~~~~~~~~~~-----------~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          261 YWVDA--KH-----H--VIERANLDGSHRKAVISQG-----------LPHPFAITVFEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EEEET--TT-----T--EEEEECTTSCSCEEEECSS-----------CSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEC--CC-----C--EEEEEeCCCCeeEEEEECC-----------CCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence            98653  21     1  6677765432222222111           01233333368899999877889999995444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=94.65  E-value=2.8  Score=38.87  Aligned_cols=188  Identities=11%  Similarity=0.077  Sum_probs=96.6

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcc----ccee-cCCC-CCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeE
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVT----GSLS-QLPP-TLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSES  239 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T----~~w~-~LP~-~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~ev  239 (453)
                      ..+|.|++....  ...++++++.+    .... .++. +..    + .+++++...-++|++...        ....++
T Consensus        39 ~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~----p-~glavd~~~~~ly~~d~~--------~~~I~~  103 (316)
T 1ijq_A           39 VASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA----P-DGLAVDWIHSNIYWTDSV--------LGTVSV  103 (316)
T ss_dssp             TTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSC----C-CEEEEETTTTEEEEEETT--------TTEEEE
T ss_pred             eCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEeCCCCC----c-CEEEEeecCCeEEEEECC--------CCEEEE
Confidence            356788877643  34788888876    2211 1221 111    1 256666444567776432        124466


Q ss_pred             EEcccCCCCCcccccC--CCCCcccCCCCCeEE--ECCEEEEEecCC-CEEEEEECCCCcEEEeecCCccccCCC-ceee
Q 045071          240 FHIDAGGFFSLWGTTS--SLPRLCSLESGRMVQ--VNGKFYCMNYSP-FSVLAYDISANAWFNIQAPMRRFLRSP-SLLD  313 (453)
Q Consensus       240 yds~~~~~~~~W~~~~--~~p~~~~~~~~~~v~--~~G~lY~~~~~~-~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~  313 (453)
                      ++.+.    ..=+.+.  .+..     ....++  .+|.+||..... ..|.++|++...-+.+...   ....+ .|+.
T Consensus       104 ~~~~g----~~~~~~~~~~~~~-----P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~---~~~~P~gla~  171 (316)
T 1ijq_A          104 ADTKG----VKRKTLFRENGSK-----PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---NIQWPNGITL  171 (316)
T ss_dssp             EETTS----SSEEEEEECTTCC-----EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---SCSCEEEEEE
T ss_pred             EeCCC----CceEEEEECCCCC-----cceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC---CCCCceEEEE
Confidence            77654    2212111  1111     022333  268999987653 6899999986554433111   11222 3333


Q ss_pred             --eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEE
Q 045071          314 --SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALL  391 (453)
Q Consensus       314 --~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~  391 (453)
                        .+++||++..  ..     .  .|+.++.+...-..+...+..         ...++.....++.||+.....++|..
T Consensus       172 d~~~~~lY~~D~--~~-----~--~I~~~d~dg~~~~~~~~~~~~---------~~~P~giav~~~~ly~~d~~~~~V~~  233 (316)
T 1ijq_A          172 DLLSGRLYWVDS--KL-----H--SISSIDVNGGNRKTILEDEKR---------LAHPFSLAVFEDKVFWTDIINEAIFS  233 (316)
T ss_dssp             ETTTTEEEEEET--TT-----T--EEEEEETTSCSCEEEEECTTT---------TSSEEEEEEETTEEEEEETTTTEEEE
T ss_pred             eccCCEEEEEEC--CC-----C--eEEEEecCCCceEEEeecCCc---------cCCcEEEEEECCEEEEEECCCCeEEE
Confidence              3688998653  11     1  566666543222333332110         01233333357899998877889999


Q ss_pred             EECCCCc
Q 045071          392 FDLCMKS  398 (453)
Q Consensus       392 Yd~~~~~  398 (453)
                      +|..+.+
T Consensus       234 ~~~~~g~  240 (316)
T 1ijq_A          234 ANRLTGS  240 (316)
T ss_dssp             EETTTCC
T ss_pred             EeCCCCc
Confidence            9986543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.65  E-value=3  Score=39.29  Aligned_cols=190  Identities=16%  Similarity=0.131  Sum_probs=100.0

Q ss_pred             eeeecCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEE
Q 045071          163 PASSSGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF  240 (453)
Q Consensus       163 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evy  240 (453)
                      ..+..+|.|++....   ..++.+|+.|++  |+.-..- .....+.   ..+   -+|++...+         -....|
T Consensus        98 ~~~~~~~~v~v~~~~---g~l~a~d~~tG~~~W~~~~~~-~~~~~p~---~~~---~~v~v~~~~---------g~l~~~  158 (376)
T 3q7m_A           98 GVTVSGGHVYIGSEK---AQVYALNTSDGTVAWQTKVAG-EALSRPV---VSD---GLVLIHTSN---------GQLQAL  158 (376)
T ss_dssp             EEEEETTEEEEEETT---SEEEEEETTTCCEEEEEECSS-CCCSCCE---EET---TEEEEECTT---------SEEEEE
T ss_pred             CceEeCCEEEEEcCC---CEEEEEECCCCCEEEEEeCCC-ceEcCCE---EEC---CEEEEEcCC---------CeEEEE
Confidence            345668888876542   478999999886  5432111 1111111   112   255554322         134667


Q ss_pred             EcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCC--cEEEeecCCcccc--------CCCc
Q 045071          241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNIQAPMRRFL--------RSPS  310 (453)
Q Consensus       241 ds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i~~p~~~~~--------~~~~  310 (453)
                      |..+|.  ..|+.....+..........+..+|.+|+-... ..+.+||+.++  .|+.- .+.+...        ....
T Consensus       159 d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~-g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~  234 (376)
T 3q7m_A          159 NEADGA--VKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDN-GRVSAVLMEQGQMIWQQR-ISQATGSTEIDRLSDVDTT  234 (376)
T ss_dssp             ETTTCC--EEEEEECCC-----CCCCCCEEETTEEEECCTT-TEEEEEETTTCCEEEEEE-CCC-----------CCCCC
T ss_pred             ECCCCc--EEEEEeCCCCceeecCCCCcEEECCEEEEEcCC-CEEEEEECCCCcEEEEEe-cccCCCCcccccccccCCC
Confidence            777654  568764322211011113456678998886544 68999999875  46543 2221100        1112


Q ss_pred             eeeeCCeEEEEEEEeccCCCCCCcEEEEEeecC--CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCe
Q 045071          311 LLDSNGKLILVAAVEKSKLNVPKSLRLWSLQAC--GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDK  388 (453)
Q Consensus       311 lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~  388 (453)
                      .+..++.||+.+.  . .       .++.+|..  ...|+.-  .+.             .......++.||+... .+.
T Consensus       235 p~~~~~~v~~~~~--~-g-------~l~~~d~~tG~~~w~~~--~~~-------------~~~~~~~~~~l~~~~~-~g~  288 (376)
T 3q7m_A          235 PVVVNGVVFALAY--N-G-------NLTALDLRSGQIMWKRE--LGS-------------VNDFIVDGNRIYLVDQ-NDR  288 (376)
T ss_dssp             CEEETTEEEEECT--T-S-------CEEEEETTTCCEEEEEC--CCC-------------EEEEEEETTEEEEEET-TCC
T ss_pred             cEEECCEEEEEec--C-c-------EEEEEECCCCcEEeecc--CCC-------------CCCceEECCEEEEEcC-CCe
Confidence            3345788886431  1 1       45556654  3346531  111             1123345889998754 578


Q ss_pred             EEEEECCCCceEE
Q 045071          389 ALLFDLCMKSWQW  401 (453)
Q Consensus       389 v~~Yd~~~~~W~~  401 (453)
                      +.+||.++.+-.|
T Consensus       289 l~~~d~~tG~~~w  301 (376)
T 3q7m_A          289 VMALTIDGGVTLW  301 (376)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCcEEE
Confidence            9999998876333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.57  E-value=3.1  Score=39.17  Aligned_cols=196  Identities=12%  Similarity=0.109  Sum_probs=96.4

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCC-----CCcceEEEEEcCCceEEEEEccCCCCccccccccee
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRP-----RLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSE  238 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~-----r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~e  238 (453)
                      ..+|.|++...   ...++.+|+.|++  |+.-......     ..........+.  -+|++...+         -...
T Consensus        51 v~~~~v~~~~~---~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~~~~---------g~l~  116 (376)
T 3q7m_A           51 LADNVVYAADR---AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG--GHVYIGSEK---------AQVY  116 (376)
T ss_dssp             EETTEEEEECT---TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET--TEEEEEETT---------SEEE
T ss_pred             EECCEEEEEcC---CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC--CEEEEEcCC---------CEEE
Confidence            35677776543   2378889998876  5432211100     011111222222  255654332         1346


Q ss_pred             EEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCc--EEEeecCCccc--cCCCceeee
Q 045071          239 SFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANA--WFNIQAPMRRF--LRSPSLLDS  314 (453)
Q Consensus       239 vyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~--W~~i~~p~~~~--~~~~~lv~~  314 (453)
                      .+|.++|.  -.|+....-.    . ....++.+|.+|+.... ..|.+||.++++  |+.- .+.+..  ......+..
T Consensus       117 a~d~~tG~--~~W~~~~~~~----~-~~~p~~~~~~v~v~~~~-g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~  187 (376)
T 3q7m_A          117 ALNTSDGT--VAWQTKVAGE----A-LSRPVVSDGLVLIHTSN-GQLQALNEADGAVKWTVN-LDMPSLSLRGESAPTTA  187 (376)
T ss_dssp             EEETTTCC--EEEEEECSSC----C-CSCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEE-CCC-----CCCCCCEEE
T ss_pred             EEECCCCC--EEEEEeCCCc----e-EcCCEEECCEEEEEcCC-CeEEEEECCCCcEEEEEe-CCCCceeecCCCCcEEE
Confidence            67777754  5687632211    1 13357789999987654 689999998764  7653 222111  111223344


Q ss_pred             CCeEEEEEEEeccCCCCCCcEEEEEeecC--CCCeEEEeecCHHH--HHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEE
Q 045071          315 NGKLILVAAVEKSKLNVPKSLRLWSLQAC--GTLWAEIERMPQQL--YAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKAL  390 (453)
Q Consensus       315 ~g~L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~~v~~mp~~~--~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~  390 (453)
                      +|.+++ +. .. .       .|+.++..  ...|+.-...|...  ...+...    ....+..++.||+... .+.+.
T Consensus       188 ~~~v~~-g~-~~-g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~v~~~~~-~g~l~  252 (376)
T 3q7m_A          188 FGAAVV-GG-DN-G-------RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDV----DTTPVVVNGVVFALAY-NGNLT  252 (376)
T ss_dssp             TTEEEE-CC-TT-T-------EEEEEETTTCCEEEEEECCC-----------CC----CCCCEEETTEEEEECT-TSCEE
T ss_pred             CCEEEE-Ec-CC-C-------EEEEEECCCCcEEEEEecccCCCCccccccccc----CCCcEEECCEEEEEec-CcEEE
Confidence            677665 21 11 1       45555653  34565432222110  0000000    0011234788888643 57899


Q ss_pred             EEECCCCce
Q 045071          391 LFDLCMKSW  399 (453)
Q Consensus       391 ~Yd~~~~~W  399 (453)
                      ++|.++.+-
T Consensus       253 ~~d~~tG~~  261 (376)
T 3q7m_A          253 ALDLRSGQI  261 (376)
T ss_dssp             EEETTTCCE
T ss_pred             EEECCCCcE
Confidence            999987753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=94.52  E-value=2.5  Score=37.85  Aligned_cols=211  Identities=8%  Similarity=0.027  Sum_probs=101.3

Q ss_pred             eeeeCCCCCeEeccCCCCCCCC-eeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceE
Q 045071          140 YLFDPHELSWYRISFALVPSEF-SPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVD  218 (453)
Q Consensus       140 ~~fdp~~~~w~~l~l~~lp~~~-~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~yk  218 (453)
                      ..||+. .+...+.++...... .+....+|.+++....  ...++++|+ +++.........  .....++..++.. +
T Consensus        81 ~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~~~--~~~~~~i~~~~~g-~  153 (299)
T 2z2n_A           81 GRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELPNK--GSYPSFITLGSDN-A  153 (299)
T ss_dssp             EEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECSST--TCCEEEEEECTTS-C
T ss_pred             EEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecC--CceEEEECC-CCCEEEecCCCC--CCCCceEEEcCCC-C
Confidence            456664 444444433111112 2333446777766432  237889999 766554322111  1122356666544 4


Q ss_pred             EEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecCCCEEEEEECCCCcEE
Q 045071          219 VTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYSPFSVLAYDISANAWF  296 (453)
Q Consensus       219 vv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~yD~~~~~W~  296 (453)
                      +++....        .....+|+. +    +...... .+.  .......+.+  +|.+|+.......|..||+ ++++.
T Consensus       154 l~v~~~~--------~~~i~~~~~-~----g~~~~~~-~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  216 (299)
T 2z2n_A          154 LWFTENQ--------NNAIGRITE-S----GDITEFK-IPT--PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT  216 (299)
T ss_dssp             EEEEETT--------TTEEEEECT-T----CCEEEEE-CSS--TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             EEEEeCC--------CCEEEEEcC-C----CcEEEee-CCC--CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence            5554321        112355655 4    3443321 111  0010112333  5788888765578999999 77776


Q ss_pred             EeecCCccccCCC-ceee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEE-EE
Q 045071          297 NIQAPMRRFLRSP-SLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFD-TI  373 (453)
Q Consensus       297 ~i~~p~~~~~~~~-~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~~  373 (453)
                      .+..+..  ...+ .++. -+|+|++... ...        .|+.++. .+....+ .++..         ...... ++
T Consensus       217 ~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~~~--------~i~~~d~-~g~~~~~-~~~~~---------~~~~~~i~~  274 (299)
T 2z2n_A          217 EFKIPTP--NARPHAITAGAGIDLWFTEW-GAN--------KIGRLTS-NNIIEEY-PIQIK---------SAEPHGICF  274 (299)
T ss_dssp             EEECSST--TCCEEEEEECSTTCEEEEET-TTT--------EEEEEET-TTEEEEE-ECSSS---------SCCEEEEEE
T ss_pred             EEECCCC--CCCceeEEECCCCCEEEecc-CCc--------eEEEECC-CCceEEE-eCCCC---------CCccceEEe
Confidence            6543321  1222 2332 4688887441 111        5666676 3333322 12210         011111 23


Q ss_pred             eeCCEEEEEEcCCCeEEEEECCCCc
Q 045071          374 GHGEFIVIVIRGSDKALLFDLCMKS  398 (453)
Q Consensus       374 ~~g~~I~l~~~~~~~v~~Yd~~~~~  398 (453)
                       .++.||+... .+.+..||+++++
T Consensus       275 -~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          275 -DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             -CSSCEEEEET-TTEEEEEEEC---
T ss_pred             -cCCCEEEEec-CCcEEEEEcCccc
Confidence             5677888754 5789999998765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.29  E-value=1.9  Score=40.72  Aligned_cols=190  Identities=17%  Similarity=0.178  Sum_probs=91.6

Q ss_pred             ecCc-eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEccc
Q 045071          166 SSGG-LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDA  244 (453)
Q Consensus       166 s~~G-ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~  244 (453)
                      +.+| .+++.+..  ...+.++|..+++....-....    ...++.+.+++-.+++.+...        ....+||..+
T Consensus        40 s~dg~~l~~~~~~--d~~i~v~d~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~~--------~~v~v~d~~~  105 (391)
T 1l0q_A           40 SPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTS  105 (391)
T ss_dssp             CTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTT--------TEEEEEETTT
T ss_pred             CCCCCEEEEECCC--CCeEEEEECCCCeEEEEEECCC----CccceEECCCCCEEEEEECCC--------CEEEEEECCC
Confidence            3344 45555432  2378899998877543222211    233555655554566655421        2457888776


Q ss_pred             CCCCCcccccCCCCCcccCCCCCeEEE-CC-EEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCcee--eeCCeEEE
Q 045071          245 GGFFSLWGTTSSLPRLCSLESGRMVQV-NG-KFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLL--DSNGKLIL  320 (453)
Q Consensus       245 ~~~~~~W~~~~~~p~~~~~~~~~~v~~-~G-~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv--~~~g~L~v  320 (453)
                          +.-...-....  ..  ....+. +| .+|+.......|..||+.+.+..... +..   ..+.-+  .-+|+.++
T Consensus       106 ----~~~~~~~~~~~--~~--~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~---~~~~~~~~~~dg~~l~  173 (391)
T 1l0q_A          106 ----NTVAGTVKTGK--SP--LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-SVG---RSPKGIAVTPDGTKVY  173 (391)
T ss_dssp             ----TEEEEEEECSS--SE--EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECC---SSEEEEEECTTSSEEE
T ss_pred             ----CeEEEEEeCCC--Cc--ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE-ecC---CCcceEEECCCCCEEE
Confidence                33222111111  00  112222 34 46666665678999999988764431 111   111122  22454443


Q ss_pred             EEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc--CCCeEEEEECCCCc
Q 045071          321 VAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR--GSDKALLFDLCMKS  398 (453)
Q Consensus       321 v~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~--~~~~v~~Yd~~~~~  398 (453)
                      +....+      ..+.+|.+.  +.+  .+..++..        .....+.....|+.+++...  ..+.+.+||+.+.+
T Consensus       174 ~~~~~~------~~v~~~d~~--~~~--~~~~~~~~--------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          174 VANFDS------MSISVIDTV--TNS--VIDTVKVE--------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             EEETTT------TEEEEEETT--TTE--EEEEEECS--------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             EEeCCC------CEEEEEECC--CCe--EEEEEecC--------CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            333221      246677544  332  22222210        00011122234667777654  46789999988765


Q ss_pred             e
Q 045071          399 W  399 (453)
Q Consensus       399 W  399 (453)
                      .
T Consensus       236 ~  236 (391)
T 1l0q_A          236 I  236 (391)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=94.28  E-value=0.24  Score=44.97  Aligned_cols=108  Identities=8%  Similarity=-0.010  Sum_probs=70.1

Q ss_pred             eEEECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCe
Q 045071          268 MVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLW  347 (453)
Q Consensus       268 ~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W  347 (453)
                      ..+.++.||..++....|..+|+++++-..-..+  .....-.+...+++||++..  +..       .+|++|.  ..-
T Consensus        60 L~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~--~~~FgeGit~~g~~Ly~ltw--~~~-------~v~V~D~--~Tl  126 (268)
T 3nok_A           60 LVFHQGHFFESTGHQGTLRQLSLESAQPVWMERL--GNIFAEGLASDGERLYQLTW--TEG-------LLFTWSG--MPP  126 (268)
T ss_dssp             EEEETTEEEEEETTTTEEEECCSSCSSCSEEEEC--TTCCEEEEEECSSCEEEEES--SSC-------EEEEEET--TTT
T ss_pred             EEEECCEEEEEcCCCCEEEEEECCCCcEEeEECC--CCcceeEEEEeCCEEEEEEc--cCC-------EEEEEEC--CcC
Confidence            3556789999887656799999999765332222  11111235567899998753  221       7888886  445


Q ss_pred             EEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          348 AEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       348 ~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      +.+.+++-.          ..++.+...++.+|+... .+++.++|+++.+-
T Consensus       127 ~~~~ti~~~----------~eGwGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v  167 (268)
T 3nok_A          127 QRERTTRYS----------GEGWGLCYWNGKLVRSDG-GTMLTFHEPDGFAL  167 (268)
T ss_dssp             EEEEEEECS----------SCCCCEEEETTEEEEECS-SSEEEEECTTTCCE
T ss_pred             cEEEEEeCC----------CceeEEecCCCEEEEECC-CCEEEEEcCCCCeE
Confidence            556666531          123445567888988764 78999999998653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=94.27  E-value=0.9  Score=41.78  Aligned_cols=117  Identities=11%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             EEEEEecCCCEEEEEECCC-CcEEEee---cCCccccCCCc-ee-eeCCe-EEEEEEEeccCCCCCCcEEEEEeecCCCC
Q 045071          274 KFYCMNYSPFSVLAYDISA-NAWFNIQ---APMRRFLRSPS-LL-DSNGK-LILVAAVEKSKLNVPKSLRLWSLQACGTL  346 (453)
Q Consensus       274 ~lY~~~~~~~~i~~yD~~~-~~W~~i~---~p~~~~~~~~~-lv-~~~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~~~~  346 (453)
                      .+|+.......|..||+.+ ++...+.   ...+.. ..+. +. .-+|+ |++++. .      ...+.+|.++..+..
T Consensus       142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pdg~~l~~~~~-~------~~~i~~~~~~~~~g~  213 (343)
T 1ri6_A          142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVFHPNEQYAYCVNE-L------NSSVDVWELKDPHGN  213 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-CCEEEEEECTTSSEEEEEET-T------TTEEEEEESSCTTSC
T ss_pred             EEEEecCCCCEEEEEEecCCCceeeecccccccCCC-CCcceEEECCCCCEEEEEeC-C------CCEEEEEEecCCCCc
Confidence            5776663446899999987 6665332   111111 1122 22 23565 544331 1      236788988765555


Q ss_pred             eEEE---eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECC--CCceEEc
Q 045071          347 WAEI---ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLC--MKSWQWI  402 (453)
Q Consensus       347 W~~v---~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~--~~~W~~l  402 (453)
                      ++.+   ..++..    +........+.....|+.+|+.....+.+.+||+.  +++++.+
T Consensus       214 ~~~~~~~~~~~~~----~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          214 IECVQTLDMMPEN----FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             CEEEEEEECSCTT----CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             EEEEeeccccCcc----ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence            5433   333331    00000000122223466888877667899999998  4555554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.25  E-value=3.3  Score=38.12  Aligned_cols=225  Identities=11%  Similarity=0.008  Sum_probs=107.2

Q ss_pred             ceeeeCCCCCeE-eccCCCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCccccee-cCCCCC--CCC---CcceEEEE
Q 045071          139 GYLFDPHELSWY-RISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLS-QLPPTL--RPR---LFPSIGLK  211 (453)
Q Consensus       139 ~~~fdp~~~~w~-~l~l~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~-~LP~~~--~~r---~~~~~~~~  211 (453)
                      ...+|+.+.+.. .++....|. ...+...+..+++.....  ..+.++|+.+++.. .++...  .+.   .....++.
T Consensus        71 v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (353)
T 3vgz_A           71 VYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVN--SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV  147 (353)
T ss_dssp             EEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTT--TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred             EEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCC--CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence            356777665532 233222222 122334445566655432  47899999888742 222211  110   11123455


Q ss_pred             EcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEE-ECC-EEEEEecCCCEEEEEE
Q 045071          212 VTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQ-VNG-KFYCMNYSPFSVLAYD  289 (453)
Q Consensus       212 ~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~-~~G-~lY~~~~~~~~i~~yD  289 (453)
                      +++++-++++.....       .....+||..++.  -.+. +.....  .  ....++ -+| .+|+... ...|..||
T Consensus       148 ~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~--~~~~-~~~~~~--~--~~~~~~s~dg~~l~~~~~-~~~i~~~d  212 (353)
T 3vgz_A          148 ADDATNTVYISGIGK-------ESVIWVVDGGNIK--LKTA-IQNTGK--M--STGLALDSEGKRLYTTNA-DGELITID  212 (353)
T ss_dssp             EETTTTEEEEEEESS-------SCEEEEEETTTTE--EEEE-ECCCCT--T--CCCCEEETTTTEEEEECT-TSEEEEEE
T ss_pred             ECCCCCEEEEEecCC-------CceEEEEcCCCCc--eEEE-ecCCCC--c--cceEEECCCCCEEEEEcC-CCeEEEEE
Confidence            655544566654211       1234677776521  1111 110110  0  112233 244 4666554 46899999


Q ss_pred             CCCCcEEE-eecCCccccCCC-cee-eeCCe-EEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhccc
Q 045071          290 ISANAWFN-IQAPMRRFLRSP-SLL-DSNGK-LILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIE  365 (453)
Q Consensus       290 ~~~~~W~~-i~~p~~~~~~~~-~lv-~~~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~  365 (453)
                      +.+.+-.. +..+.......+ .++ .-+|+ ||+.+ ...      .  .|+.+|..+.+.......+.          
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~------~--~v~~~d~~~~~~~~~~~~~~----------  273 (353)
T 3vgz_A          213 TADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD-SKA------A--EVLVVDTRNGNILAKVAAPE----------  273 (353)
T ss_dssp             TTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE-SSS------S--EEEEEETTTCCEEEEEECSS----------
T ss_pred             CCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe-CCC------C--EEEEEECCCCcEEEEEEcCC----------
Confidence            99876533 222111111111 122 22454 55433 111      2  45555654454433323322          


Q ss_pred             CCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEE
Q 045071          366 AGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQW  401 (453)
Q Consensus       366 ~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~  401 (453)
                       ...+.....|+.+|+.....+.+.+||..+.+...
T Consensus       274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          274 -SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             -CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence             12334445678899987767899999998876543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.20  E-value=2.1  Score=40.29  Aligned_cols=187  Identities=13%  Similarity=0.132  Sum_probs=90.8

Q ss_pred             eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCC
Q 045071          170 LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFS  249 (453)
Q Consensus       170 ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~  249 (453)
                      .+++.+...  ..+.++|..+++....-...    ....++.+.+++-.+++.+..        .....+||..+    +
T Consensus         3 ~l~vs~~~d--~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~--------d~~i~v~d~~~----~   64 (391)
T 1l0q_A            3 FAYIANSES--DNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAH--------SNDVSIIDTAT----N   64 (391)
T ss_dssp             EEEEEETTT--TEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGG--------GTEEEEEETTT----T
T ss_pred             EEEEEcCCC--CEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCC--------CCeEEEEECCC----C
Confidence            455554332  46888888877654321111    112355665555566665532        12457788766    3


Q ss_pred             cccccCCCCCcccCCCCCeEEE-CC-EEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceee--eCCeEEEEEEEe
Q 045071          250 LWGTTSSLPRLCSLESGRMVQV-NG-KFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLD--SNGKLILVAAVE  325 (453)
Q Consensus       250 ~W~~~~~~p~~~~~~~~~~v~~-~G-~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~--~~g~L~vv~~~~  325 (453)
                      .-...-..+.  ..  ....+. +| .+|+.......|..||+.+++...... ..   ..+.-+.  -+|+.+++....
T Consensus        65 ~~~~~~~~~~--~v--~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~---~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           65 NVIATVPAGS--SP--QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TG---KSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             EEEEEEECSS--SE--EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CS---SSEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCC--Cc--cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CC---CCcceEEECCCCCEEEEEeCC
Confidence            3222111111  00  112222 34 466666555789999999886543311 11   1111222  345544333321


Q ss_pred             ccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceE
Q 045071          326 KSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQ  400 (453)
Q Consensus       326 ~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~  400 (453)
                      +      ..+.+|.++  +.+.........          ....+.....++.+++.....+.+.+||+.+.+..
T Consensus       137 ~------~~v~~~d~~--~~~~~~~~~~~~----------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          137 D------KTVSVINTV--TKAVINTVSVGR----------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (391)
T ss_dssp             T------TEEEEEETT--TTEEEEEEECCS----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             C------CEEEEEECC--CCcEEEEEecCC----------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence            1      256666543  343332222111          00112222346678777666788999999887543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.13  E-value=3.4  Score=37.79  Aligned_cols=195  Identities=9%  Similarity=0.111  Sum_probs=94.5

Q ss_pred             eEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccc-eeEEEcccCCCCCccccc--CCCC
Q 045071          182 TLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLS-SESFHIDAGGFFSLWGTT--SSLP  258 (453)
Q Consensus       182 ~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~-~evyds~~~~~~~~W~~~--~~~p  258 (453)
                      .+.++|+.+++....-+..  .  ...++...+++-.+++.+...        .. ..+|+....   +.-...  ..++
T Consensus       109 ~i~v~d~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~~~~~~--------~~~i~~~~~~~~---g~~~~~~~~~~~  173 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIP--Y--DAVGIAISPNGNGLILIDRSS--------ANTVRRFKIDAD---GVLFDTGQEFIS  173 (331)
T ss_dssp             EEEEEETTTTEEEEEEECC--T--TEEEEEECTTSSCEEEEEETT--------TTEEEEEEECTT---CCEEEEEEEEEC
T ss_pred             cEEEEECCCCCeEEEEECC--C--CccceEECCCCCEEEEEecCC--------CceEEEEEECCC---CcEeecCCcccc
Confidence            7999999887754321111  1  113556666543466554321        12 456665431   111000  0001


Q ss_pred             CcccCCCCCeEE-ECCE-EEEEecCCCEEEEEECCCCcE----EEeecCCccccCCCce-eeeCCe-EEEEEEEeccCCC
Q 045071          259 RLCSLESGRMVQ-VNGK-FYCMNYSPFSVLAYDISANAW----FNIQAPMRRFLRSPSL-LDSNGK-LILVAAVEKSKLN  330 (453)
Q Consensus       259 ~~~~~~~~~~v~-~~G~-lY~~~~~~~~i~~yD~~~~~W----~~i~~p~~~~~~~~~l-v~~~g~-L~vv~~~~~~~~~  330 (453)
                      .  .......++ -+|. +|+.......|..||+.+.+.    ..+...  .  ....+ +.-+|+ ||+... ..    
T Consensus       174 ~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~v~~~-~~----  242 (331)
T 3u4y_A          174 G--GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--N--LPGTIVVSRDGSTVYVLTE-ST----  242 (331)
T ss_dssp             S--SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--S--CCCCEEECTTSSEEEEECS-SE----
T ss_pred             C--CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--C--CCceEEECCCCCEEEEEEc-CC----
Confidence            0  000011122 2464 777776567899999988764    223221  1  11122 233566 554332 11    


Q ss_pred             CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEEcCCCC
Q 045071          331 VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCP  406 (453)
Q Consensus       331 ~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~~p  406 (453)
                        .  .|+.++..+++.+.+..++..+...-........+.....|..+|+.....+.+.+||++++.-..+....
T Consensus       243 --~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~  314 (331)
T 3u4y_A          243 --V--DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIE  314 (331)
T ss_dssp             --E--EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCC
T ss_pred             --C--EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceeccc
Confidence              1  34445555565554544432100000000000123444567889888776789999999998877765443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=93.65  E-value=0.38  Score=43.55  Aligned_cols=109  Identities=11%  Similarity=0.101  Sum_probs=68.3

Q ss_pred             eEEECCEEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCC
Q 045071          268 MVQVNGKFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGT  345 (453)
Q Consensus       268 ~v~~~G~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~  345 (453)
                      ..+.+|.+|.-++.  ...|..+|+++++-..- .+++.....-.+...+++||++...+  .       .+|++|..+ 
T Consensus        48 L~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~-~~l~~~~FgeGit~~g~~ly~ltw~~--~-------~v~v~D~~t-  116 (262)
T 3nol_A           48 FFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQ-IELGKRYFGEGISDWKDKIVGLTWKN--G-------LGFVWNIRN-  116 (262)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSS--S-------EEEEEETTT-
T ss_pred             EEEECCEEEEECCCCCCceEEEEECCCCcEEEE-EecCCccceeEEEEeCCEEEEEEeeC--C-------EEEEEECcc-
Confidence            35568899987654  24799999999876432 22222111123556789999875422  1       788888644 


Q ss_pred             CeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          346 LWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       346 ~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                       -+.+.+++-.          ..++.+...++.+|+... .+++.++|+++.+-
T Consensus       117 -~~~~~ti~~~----------~eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v  158 (262)
T 3nol_A          117 -LRQVRSFNYD----------GEGWGLTHNDQYLIMSDG-TPVLRFLDPESLTP  158 (262)
T ss_dssp             -CCEEEEEECS----------SCCCCEEECSSCEEECCS-SSEEEEECTTTCSE
T ss_pred             -CcEEEEEECC----------CCceEEecCCCEEEEECC-CCeEEEEcCCCCeE
Confidence             4455555431          123444556778888754 68899999998543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.61  E-value=3.8  Score=37.99  Aligned_cols=139  Identities=5%  Similarity=0.067  Sum_probs=70.2

Q ss_pred             ceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE-C--CEEEEEecCCCEEEEEECCCCcE-EEeecCCccccCCCce
Q 045071          236 SSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV-N--GKFYCMNYSPFSVLAYDISANAW-FNIQAPMRRFLRSPSL  311 (453)
Q Consensus       236 ~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~-~--G~lY~~~~~~~~i~~yD~~~~~W-~~i~~p~~~~~~~~~l  311 (453)
                      .+.+|+..+    +.|..+..+..... .-....+. +  |.+.+.+.....|..||+.+..- ......  .......-
T Consensus        80 ~v~iwd~~~----~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~v~~  152 (379)
T 3jrp_A           80 KVLIWKEEN----GRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--AHAIGVNS  152 (379)
T ss_dssp             CEEEEEEET----TEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE--CCTTCEEE
T ss_pred             EEEEEEcCC----CceeEeeeecCCCc-ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec--CCCCceEE
Confidence            457888887    66655433221000 00111222 2  44444444446899999987632 111110  00011111


Q ss_pred             eee---------------CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEe--
Q 045071          312 LDS---------------NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIG--  374 (453)
Q Consensus       312 v~~---------------~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~--  374 (453)
                      +..               ++++++++...       ..+.||.+......|..+..+...          ...+.++.  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~h----------~~~v~~~~~s  215 (379)
T 3jrp_A          153 ASWAPATIEEDGEHNGTKESRKFVTGGAD-------NLVKIWKYNSDAQTYVLESTLEGH----------SDWVRDVAWS  215 (379)
T ss_dssp             EEECCCC----------CTTCEEEEEETT-------SCEEEEEEETTTTEEEEEEEECCC----------SSCEEEEEEC
T ss_pred             EEEcCccccccccccCCCCCCEEEEEeCC-------CeEEEEEecCCCcceeeEEEEecc----------cCcEeEEEEC
Confidence            111               46777666422       268999998766667666555420          01233322  


Q ss_pred             -eC--CEEEEEEcCCCeEEEEECCCCc
Q 045071          375 -HG--EFIVIVIRGSDKALLFDLCMKS  398 (453)
Q Consensus       375 -~g--~~I~l~~~~~~~v~~Yd~~~~~  398 (453)
                       .+  +.+++.....+.+.+||+.+..
T Consensus       216 p~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          216 PTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             CCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence             21  4555555557889999998863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=93.50  E-value=3.7  Score=37.19  Aligned_cols=160  Identities=13%  Similarity=0.018  Sum_probs=87.4

Q ss_pred             EEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEE
Q 045071          208 IGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLA  287 (453)
Q Consensus       208 ~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~  287 (453)
                      -|+.+++++ ++|+..+..      ......++|..+    ++=...-.++.  .......+..++.+|+++.....+.+
T Consensus        24 ~Gl~~~~dg-~Lyvstg~~------~~s~v~~iD~~t----g~v~~~i~l~~--~~fgeGi~~~g~~lyv~t~~~~~v~v   90 (266)
T 2iwa_A           24 QGLVYAEND-TLFESTGLY------GRSSVRQVALQT----GKVENIHKMDD--SYFGEGLTLLNEKLYQVVWLKNIGFI   90 (266)
T ss_dssp             EEEEECSTT-EEEEEECST------TTCEEEEEETTT----CCEEEEEECCT--TCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred             ccEEEeCCC-eEEEECCCC------CCCEEEEEECCC----CCEEEEEecCC--CcceEEEEEeCCEEEEEEecCCEEEE
Confidence            367776543 677764421      123567888887    33222111221  11112235567899999987789999


Q ss_pred             EECCCCcE-EEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccC
Q 045071          288 YDISANAW-FNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEA  366 (453)
Q Consensus       288 yD~~~~~W-~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~  366 (453)
                      ||.++.+- ..++.+.+   ....+...+++||+..  ..+        .|+.+|..+.+  .+.+++.........  .
T Consensus        91 iD~~t~~v~~~i~~g~~---~g~glt~Dg~~l~vs~--gs~--------~l~viD~~t~~--v~~~I~Vg~~~~p~~--~  153 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQMK---DGWGLATDGKILYGSD--GTS--------ILYEIDPHTFK--LIKKHNVKYNGHRVI--R  153 (266)
T ss_dssp             EETTTTEEEEEEECCSS---SCCEEEECSSSEEEEC--SSS--------EEEEECTTTCC--EEEEEECEETTEECC--C
T ss_pred             EECCCCcEEEEEECCCC---CeEEEEECCCEEEEEC--CCC--------eEEEEECCCCc--EEEEEEECCCCcccc--c
Confidence            99998643 33433312   1223444456777533  221        78888975543  333443200000000  0


Q ss_pred             CCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          367 GNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       367 ~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      ...+.+.  ++.+|+.....+.|.+-|+.+.+-
T Consensus       154 ~nele~~--dg~lyvn~~~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          154 LNELEYI--NGEVWANIWQTDCIARISAKDGTL  184 (266)
T ss_dssp             EEEEEEE--TTEEEEEETTSSEEEEEETTTCCE
T ss_pred             ceeEEEE--CCEEEEecCCCCeEEEEECCCCcE
Confidence            0123333  678998876678999999998764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=92.97  E-value=0.72  Score=41.92  Aligned_cols=104  Identities=15%  Similarity=0.059  Sum_probs=64.6

Q ss_pred             CEEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEE
Q 045071          273 GKFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEI  350 (453)
Q Consensus       273 G~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v  350 (453)
                      |.+|..++.  ...|.++|+++++-..- .+.+.......+...+++||+...  ...       .++++|..  ..+.+
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~-i~l~~~~fgeGi~~~g~~lyv~t~--~~~-------~v~viD~~--t~~v~   99 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENI-HKMDDSYFGEGLTLLNEKLYQVVW--LKN-------IGFIYDRR--TLSNI   99 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEET--TCS-------EEEEEETT--TTEEE
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEE-EecCCCcceEEEEEeCCEEEEEEe--cCC-------EEEEEECC--CCcEE
Confidence            789988642  46899999999875432 222221111234556789998653  221       67888864  45556


Q ss_pred             eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc
Q 045071          351 ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS  398 (453)
Q Consensus       351 ~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~  398 (453)
                      .+++...         ..++.....|+.+|+.. ..+.+.+.|+++.+
T Consensus       100 ~~i~~g~---------~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~  137 (266)
T 2iwa_A          100 KNFTHQM---------KDGWGLATDGKILYGSD-GTSILYEIDPHTFK  137 (266)
T ss_dssp             EEEECCS---------SSCCEEEECSSSEEEEC-SSSEEEEECTTTCC
T ss_pred             EEEECCC---------CCeEEEEECCCEEEEEC-CCCeEEEEECCCCc
Confidence            6664210         12334444678888876 47899999998865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=92.80  E-value=6.4  Score=36.96  Aligned_cols=187  Identities=13%  Similarity=0.058  Sum_probs=100.2

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccC
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAG  245 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~  245 (453)
                      ..+|.|++....  ...++++++.+.....+.....   ..-.|+.++...-+||++...        ....++++.+. 
T Consensus        82 ~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~---~~p~glavd~~~g~ly~~d~~--------~~~I~~~~~dG-  147 (349)
T 3v64_C           82 HRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGL---ESPGGLAVDWVHDKLYWTDSG--------TSRIEVANLDG-  147 (349)
T ss_dssp             TTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSC---SCCCEEEEETTTTEEEEEETT--------TTEEEEEETTS-
T ss_pred             ccccEEEEEecc--CCceEEEecCCCCceEEEeCCC---CCccEEEEecCCCeEEEEcCC--------CCeEEEEcCCC-
Confidence            357888877543  3478888888765443321111   111256666545577776542        12446666654 


Q ss_pred             CCCCcccccC--CCCCcccCCCCCeEEE--CCEEEEEecCC-CEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCe
Q 045071          246 GFFSLWGTTS--SLPRLCSLESGRMVQV--NGKFYCMNYSP-FSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGK  317 (453)
Q Consensus       246 ~~~~~W~~~~--~~p~~~~~~~~~~v~~--~G~lY~~~~~~-~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~  317 (453)
                         ..-+.+.  .+..     ....++-  +|.+||..... ..|..+|++...-+.+-.   .....+ .|+.  .+++
T Consensus       148 ---~~~~~l~~~~l~~-----P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGla~d~~~~~  216 (349)
T 3v64_C          148 ---AHRKVLLWQSLEK-----PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDYAGRR  216 (349)
T ss_dssp             ---CSCEEEECTTCSC-----EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC---SSCSCEEEEEEETTTTE
T ss_pred             ---CceEEEEeCCCCC-----cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE---CCCCCcceEEEeCCCCE
Confidence               2222211  1111     0223333  68999998765 789999998755443311   112222 2333  4788


Q ss_pred             EEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCC
Q 045071          318 LILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMK  397 (453)
Q Consensus       318 L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~  397 (453)
                      ||++..  ..     .  .|+.++.+...-..+....           ...+......++.||+.....++|..+|..+.
T Consensus       217 lY~aD~--~~-----~--~I~~~~~dG~~~~~~~~~~-----------~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          217 MYWVDA--KH-----H--VIERANLDGSHRKAVISQG-----------LPHPFAITVFEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEEEET--TT-----T--EEEEEETTSCSCEEEECSS-----------CSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEC--CC-----C--EEEEEeCCCCceEEEEeCC-----------CCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence            998653  21     1  5666665432222222211           01233333368899999877889999995544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=92.60  E-value=7.7  Score=37.34  Aligned_cols=210  Identities=10%  Similarity=0.010  Sum_probs=101.8

Q ss_pred             eecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEccc
Q 045071          165 SSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDA  244 (453)
Q Consensus       165 ~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~  244 (453)
                      ...+|-|++....  ...+.++|+.+++...+.....   .+.  +.+++..-.+++......       ....+++...
T Consensus       138 ~d~~g~lyv~d~~--~~~I~~id~~~g~~~~~~~~~~---~~~--ia~~~~g~~l~~~d~~~~-------~~I~~~d~~~  203 (409)
T 3hrp_A          138 AVGNNTVLAYQRD--DPRVRLISVDDNKVTTVHPGFK---GGK--PAVTKDKQRVYSIGWEGT-------HTVYVYMKAS  203 (409)
T ss_dssp             ECSTTEEEEEETT--TTEEEEEETTTTEEEEEEETCC---BCB--CEECTTSSEEEEEBSSTT-------CEEEEEEGGG
T ss_pred             EeCCCCEEEEecC--CCcEEEEECCCCEEEEeeccCC---CCc--eeEecCCCcEEEEecCCC-------ceEEEEEcCC
Confidence            3466777776543  2478999998877655432211   112  334444445666554211       1345666654


Q ss_pred             CCCCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecCCCEEEEEECCCCcEEEeec-CCc-cccCCC--ceeee--CC
Q 045071          245 GGFFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYSPFSVLAYDISANAWFNIQA-PMR-RFLRSP--SLLDS--NG  316 (453)
Q Consensus       245 ~~~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~yD~~~~~W~~i~~-p~~-~~~~~~--~lv~~--~g  316 (453)
                      +   .....+..............++.  +|.||+... ...|..||+.+.....+.. +.. .....+  .++..  +|
T Consensus       204 ~---~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          204 G---WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             T---TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred             C---ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC
Confidence            1   11122211110000111223333  689999543 4689999999877554411 111 111121  34433  58


Q ss_pred             eEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcc-----cCCCcEE-EEeeCCEEEEEEc-CCCeE
Q 045071          317 KLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEI-----EAGNGFD-TIGHGEFIVIVIR-GSDKA  389 (453)
Q Consensus       317 ~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~-----~~~~~~~-~~~~g~~I~l~~~-~~~~v  389 (453)
                      .||+...  .+     .  .|++++.+.. ...+..-+..  ..+...     ....+.. ++..++.||+... ...+|
T Consensus       280 ~lyv~d~--~~-----~--~I~~~~~~g~-~~~~~g~~~~--~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I  347 (409)
T 3hrp_A          280 NFYMSDQ--NL-----S--SVYKITPDGE-CEWFCGSATQ--KTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL  347 (409)
T ss_dssp             EEEEEET--TT-----T--EEEEECTTCC-EEEEEECTTC--CSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred             EEEEEeC--CC-----C--EEEEEecCCC-EEEEEeCCCC--CCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence            8987542  11     1  6777775433 2222211100  000000     0001111 2222345999987 78899


Q ss_pred             EEEECCCCceEEcCC
Q 045071          390 LLFDLCMKSWQWIPR  404 (453)
Q Consensus       390 ~~Yd~~~~~W~~l~~  404 (453)
                      ..+|+.+.+...+..
T Consensus       348 ~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          348 RKLDILDGYVSTVAG  362 (409)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEECCCCEEEEEeC
Confidence            999987777665543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=92.52  E-value=7.5  Score=37.07  Aligned_cols=188  Identities=13%  Similarity=0.016  Sum_probs=97.7

Q ss_pred             CceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC
Q 045071          168 GGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF  247 (453)
Q Consensus       168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~  247 (453)
                      .+.|++...    ..+..+++.++....+-..    .....++.++...-+||++....        .....++.+.   
T Consensus        87 ~~~l~~~~~----~~I~~i~~~~~~~~~~~~~----~~~~~gl~~d~~~~~ly~~D~~~--------~~I~r~~~~g---  147 (386)
T 3v65_B           87 EPVLLFANR----IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVTL--------DRILRANLNG---  147 (386)
T ss_dssp             CCEEEEECB----SCEEEECTTSCCCEEEECS----CSCEEEEEEETTTTEEEEEETTT--------TEEEEEETTS---
T ss_pred             cceeEeecC----ccceeeccCCCcEEEEecC----CCccEEEEEecCCCeEEEEeCCC--------CcEEEEecCC---
Confidence            455555432    2567777776655433221    11245777776556788775421        2345566555   


Q ss_pred             CCcccccCCCCCcccCCCCCeEE--ECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeEEEEE
Q 045071          248 FSLWGTTSSLPRLCSLESGRMVQ--VNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLILVA  322 (453)
Q Consensus       248 ~~~W~~~~~~p~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~vv~  322 (453)
                       ...+.+.....  . .....++  .+|.|||.......|.++|++...-..+..   .....+ .++.  .+|.||+..
T Consensus       148 -~~~~~~~~~~~--~-~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~---~~l~~P~giavdp~~g~ly~td  220 (386)
T 3v65_B          148 -SNVEEVVSTGL--E-SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTD  220 (386)
T ss_dssp             -CCEEEEECSSC--S-CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEE
T ss_pred             -CCcEEEEeCCC--C-CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec---CCCCCCcEEEEEcCCCeEEEec
Confidence             33333211110  0 1122333  368999998777799999998765433311   111222 2333  368888754


Q ss_pred             EEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc
Q 045071          323 AVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS  398 (453)
Q Consensus       323 ~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~  398 (453)
                      ...        .-+|++++.+...-+.+..-.      +.   ...++..-..++.||+.....+.|.++|++...
T Consensus       221 ~~~--------~~~I~r~~~dG~~~~~~~~~~------~~---~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (386)
T 3v65_B          221 WGN--------TPRIEASSMDGSGRRIIADTH------LF---WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  279 (386)
T ss_dssp             CSS--------SCEEEEEETTSCSCEEEECSS------CS---CEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS
T ss_pred             cCC--------CCEEEEEeCCCCCcEEEEECC------CC---CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe
Confidence            211        116777776433222222100      00   001233222578899987767889999987543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=92.33  E-value=5.9  Score=35.38  Aligned_cols=199  Identities=10%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcccceecCCCCCC--CCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcc
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLR--PRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHID  243 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~--~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~  243 (453)
                      ..+|.+++....  ...+.++|+-.+....++....  .......++.++...-+++++....       .....+|+..
T Consensus        38 ~~~g~l~v~~~~--~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-------~~~i~~~d~~  108 (286)
T 1q7f_A           38 NAQNDIIVADTN--NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------THQIQIYNQY  108 (286)
T ss_dssp             CTTCCEEEEEGG--GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------GCEEEEECTT
T ss_pred             CCCCCEEEEECC--CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-------CCEEEEECCC
Confidence            345666665432  2368888887555444443211  1112233555532233566654210       1234666633


Q ss_pred             cCCCCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-cee-eeCCeEE
Q 045071          244 AGGFFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLL-DSNGKLI  319 (453)
Q Consensus       244 ~~~~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv-~~~g~L~  319 (453)
                      .    ..-........    .....+.+  +|.+|+.......|..||........+..+  .....+ .++ .-+|+||
T Consensus       109 g----~~~~~~~~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          109 G----QFVRKFGATIL----QHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--KHLEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             S----CEEEEECTTTC----SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--TTCSSEEEEEECSSSEEE
T ss_pred             C----cEEEEecCccC----CCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC--CccCCcEEEEECCCCCEE
Confidence            2    22121211100    00112333  588888876557899999876655444322  111222 233 2468888


Q ss_pred             EEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEE-EEeeCCEEEEEEcCCC-eEEEEECCCC
Q 045071          320 LVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFD-TIGHGEFIVIVIRGSD-KALLFDLCMK  397 (453)
Q Consensus       320 vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~~~~g~~I~l~~~~~~-~v~~Yd~~~~  397 (453)
                      +.... .      .  .|+.++... ...  ..+...  ..+     ..+.. ++..++.||+.....+ .+.+||.+.+
T Consensus       179 v~~~~-~------~--~i~~~~~~g-~~~--~~~~~~--g~~-----~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~  239 (286)
T 1q7f_A          179 ISDNR-A------H--CVKVFNYEG-QYL--RQIGGE--GIT-----NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ  239 (286)
T ss_dssp             EEEGG-G------T--EEEEEETTC-CEE--EEESCT--TTS-----CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred             EEECC-C------C--EEEEEcCCC-CEE--EEEccC--Ccc-----CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC
Confidence            75421 1      1  444455533 222  222110  000     01222 2223457888766554 8999998766


Q ss_pred             ceEEc
Q 045071          398 SWQWI  402 (453)
Q Consensus       398 ~W~~l  402 (453)
                      ....+
T Consensus       240 ~~~~~  244 (286)
T 1q7f_A          240 LISAL  244 (286)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            54444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.28  E-value=5.6  Score=35.02  Aligned_cols=188  Identities=14%  Similarity=0.155  Sum_probs=91.8

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccC
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAG  245 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~  245 (453)
                      ..+|.+++...   ...++++|+-++....++...   .....++.+++.+ ++++....        .....+|+..+ 
T Consensus        75 ~~~g~l~v~~~---~~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g-~l~v~~~~--------~~~i~~~~~~~-  138 (270)
T 1rwi_B           75 DGAGTVYVTDF---NNRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQG-AVYVADRG--------NNRVVKLAAGS-  138 (270)
T ss_dssp             CTTCCEEEEET---TTEEEEECTTCSCCEECCCCS---CSSEEEEEECTTC-CEEEEEGG--------GTEEEEECTTC-
T ss_pred             CCCCCEEEEcC---CCEEEEEeCCCceEeeeecCC---cCCCcceEECCCC-CEEEEECC--------CCEEEEEECCC-
Confidence            34566666653   247899999887655543221   1122356666544 46665431        11234554333 


Q ss_pred             CCCCcccccCCCCCcccCCCCCeEEE-CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-ceee-eCCeEEEEE
Q 045071          246 GFFSLWGTTSSLPRLCSLESGRMVQV-NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD-SNGKLILVA  322 (453)
Q Consensus       246 ~~~~~W~~~~~~p~~~~~~~~~~v~~-~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~-~~g~L~vv~  322 (453)
                         ......... .. . .....++- +|.+|+.......|..||..+........  . ....+ .++. -+|.||+..
T Consensus       139 ---~~~~~~~~~-~~-~-~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~--~-~~~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          139 ---KTQTVLPFT-GL-N-DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF--T-DITAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             ---CSCEECCCC-SC-C-SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC--S-SCCSEEEEEECTTCCEEEEE
T ss_pred             ---ceeEeeccc-cC-C-CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc--c-CCCCceEEEECCCCCEEEEE
Confidence               222211110 00 0 11222332 58899887655789999998876543211  1 11222 2332 357888754


Q ss_pred             EEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEE-EeeCCEEEEEEcCCCeEEEEECCCCc
Q 045071          323 AVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDT-IGHGEFIVIVIRGSDKALLFDLCMKS  398 (453)
Q Consensus       323 ~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~g~~I~l~~~~~~~v~~Yd~~~~~  398 (453)
                      .  ..     .  .|+.++.....- ..  .+..   .+     .....+ +..++.||+.....++|.+|++..++
T Consensus       210 ~--~~-----~--~v~~~~~~~~~~-~~--~~~~---~~-----~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          210 H--NT-----N--QVVKLLAGSTTS-TV--LPFT---GL-----NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             T--TT-----S--CEEEECTTCSCC-EE--CCCC---SC-----SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             C--CC-----C--cEEEEcCCCCcc-ee--eccC---CC-----CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            2  11     1  455556543221 11  1100   00     012222 22234688887667889999887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=91.97  E-value=7.8  Score=35.98  Aligned_cols=117  Identities=14%  Similarity=0.258  Sum_probs=59.3

Q ss_pred             CCE-EEEEecCCCEEEEEECCCCc-------EE------EeecCCccccCCC-ce-eeeCCeEEEEEEEeccCCCCCCcE
Q 045071          272 NGK-FYCMNYSPFSVLAYDISANA-------WF------NIQAPMRRFLRSP-SL-LDSNGKLILVAAVEKSKLNVPKSL  335 (453)
Q Consensus       272 ~G~-lY~~~~~~~~i~~yD~~~~~-------W~------~i~~p~~~~~~~~-~l-v~~~g~L~vv~~~~~~~~~~~~~i  335 (453)
                      +|+ +|+.......+..||+....       ..      ....+..   ..+ .+ +.-+|+.+++....      ...+
T Consensus       165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~------~~~v  235 (361)
T 3scy_A          165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG---SGPRHLIFNSDGKFAYLINEI------GGTV  235 (361)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT---CCEEEEEECTTSSEEEEEETT------TCEE
T ss_pred             CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC---CCCeEEEEcCCCCEEEEEcCC------CCeE
Confidence            564 77776655788888776543       21      1112211   111 22 22356643333211      2357


Q ss_pred             EEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-CCeEEEEECC--CCceEEcC
Q 045071          336 RLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-SDKALLFDLC--MKSWQWIP  403 (453)
Q Consensus       336 ~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-~~~v~~Yd~~--~~~W~~l~  403 (453)
                      .+|.++  ++.++.+..++... ..+   .....+.....|..||+.... .+.+.+||+.  +++++.+.
T Consensus       236 ~v~~~~--~g~~~~~~~~~~~~-~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          236 IAFRYA--DGMLDEIQTVAADT-VNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG  300 (361)
T ss_dssp             EEEEEE--TTEEEEEEEEESCS-SCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred             EEEEec--CCceEEeEEEecCC-CCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence            888887  45555544432100 000   000122223457788888776 6789999885  55665553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=91.75  E-value=3.3  Score=43.26  Aligned_cols=107  Identities=11%  Similarity=0.105  Sum_probs=59.0

Q ss_pred             CCEEEEEecCC-CEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCe
Q 045071          272 NGKFYCMNYSP-FSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLW  347 (453)
Q Consensus       272 ~G~lY~~~~~~-~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W  347 (453)
                      +|.|||..... ..|.++++....-..+...   .+..+ .|+.  .+++||++..  ..     .  .|++++.....-
T Consensus       507 ~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~---~l~~PnGlavd~~~~~LY~aD~--~~-----~--~I~~~d~dG~~~  574 (699)
T 1n7d_A          507 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---NIQWPNGITLDLLSGRLYWVDS--KL-----H--SISSIDVNGGNR  574 (699)
T ss_dssp             SSCCEECCCSSSCCEEBCCSSSCCCCEESCS---SCSSCCCEEECTTTCCEEEEET--TT-----T--EEEEECSSSSCC
T ss_pred             CCcEEEcccCCCCeEEEEeCCCCCeeEEEeC---CCCCccEEEEeccCCEEEEEec--CC-----C--eEEEEccCCCce
Confidence            58899987543 5788888876543333111   11222 2333  3588998653  21     1  566666543333


Q ss_pred             EEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          348 AEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       348 ~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      ..+...+..    +     ..++.....++.||+.....++|.++|..+.+-
T Consensus       575 ~~~~~~~~~----~-----~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          575 KTILEDEKR----L-----AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             EEECCCSSS----C-----SSCCCCEEETTEEEEECSTTTCEEEEETTTEEE
T ss_pred             EEEEecCCc----C-----CCceEeEEECCEEEEEeCCCCeEEEEEccCCCc
Confidence            333222110    0     112222335789999876678999999876554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=91.66  E-value=6.9  Score=34.74  Aligned_cols=158  Identities=11%  Similarity=0.015  Sum_probs=80.6

Q ss_pred             EEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecCCCEE
Q 045071          208 IGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYSPFSV  285 (453)
Q Consensus       208 ~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~~i  285 (453)
                      .++.+++..-++|++...        .....+|+.+.    ..-..+.....  . .....++-  +|.+|+.......|
T Consensus        39 ~gi~~d~~~~~ly~~d~~--------~~~I~~~~~~g----~~~~~~~~~~~--~-~p~~ia~d~~~~~lyv~d~~~~~I  103 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDIS--------EPSIGRASLHG----GEPTTIIRQDL--G-SPEGIALDHLGRTIFWTDSQLDRI  103 (267)
T ss_dssp             EEEEEETTTTEEEEEETT--------TTEEEEEESSS----CCCEEEECTTC--C-CEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEecCCCEEEEEECC--------CCEEEEEecCC----CCcEEEEECCC--C-CccEEEEEecCCeEEEEECCCCEE
Confidence            366666655567776542        12346677655    22121111000  0 11222332  57999998776799


Q ss_pred             EEEECCCCcEEEeecCCccccCCC-ceee--eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhh
Q 045071          286 LAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFA  362 (453)
Q Consensus       286 ~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~  362 (453)
                      .++|++...-..+ .+.  ....+ .++.  .+|+||+.......     .  .|++++.+...-+.+....      +.
T Consensus       104 ~~~~~~g~~~~~~-~~~--~~~~P~~i~vd~~~g~lyv~~~~~~~-----~--~I~~~~~dg~~~~~~~~~~------~~  167 (267)
T 1npe_A          104 EVAKMDGTQRRVL-FDT--GLVNPRGIVTDPVRGNLYWTDWNRDN-----P--KIETSHMDGTNRRILAQDN------LG  167 (267)
T ss_dssp             EEEETTSCSCEEE-ECS--SCSSEEEEEEETTTTEEEEEECCSSS-----C--EEEEEETTSCCCEEEECTT------CS
T ss_pred             EEEEcCCCCEEEE-EEC--CCCCccEEEEeeCCCEEEEEECCCCC-----c--EEEEEecCCCCcEEEEECC------CC
Confidence            9999986543333 111  11222 2332  26889986532111     1  5566555332222222110      00


Q ss_pred             cccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          363 EIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       363 ~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                         ...++.....++.||+.....+.+.++|++...-
T Consensus       168 ---~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          168 ---LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (267)
T ss_dssp             ---CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             ---CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence               0012222234789999987788999999986543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=91.54  E-value=10  Score=36.41  Aligned_cols=190  Identities=10%  Similarity=0.063  Sum_probs=96.8

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcccc----eecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEE
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGS----LSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFH  241 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~----w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyd  241 (453)
                      ..+|.||+....  ...++.+++-...    ...+-.   .......|+.++...-+||++...        ...+++++
T Consensus       121 ~~~~~lywsD~~--~~~I~~~~~~g~~~~~~~~~~~~---~~~~~p~glavD~~~~~lY~~d~~--------~~~I~~~~  187 (400)
T 3p5b_L          121 VASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAVDWIHSNIYWTDSV--------LGTVSVAD  187 (400)
T ss_dssp             TTTTEEEEEETT--TTEEEEEEC------CCCEEEEC---SSCSCEEEEEEETTTTEEEEEETT--------TTEEEEEC
T ss_pred             eccCceEEEecC--CCeEEEEEcccCCCCCcceEEEe---CCCCCcccEEEEecCCceEEEECC--------CCeEEEEe
Confidence            346888876543  2367777775421    111111   011123467776545577877542        12345666


Q ss_pred             cccCCCCCcccccCCCCCcccCCCCCeEEE---CCEEEEEecC-CCEEEEEECCCCcEEEeecCCccccCCC-ceee--e
Q 045071          242 IDAGGFFSLWGTTSSLPRLCSLESGRMVQV---NGKFYCMNYS-PFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--S  314 (453)
Q Consensus       242 s~~~~~~~~W~~~~~~p~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~  314 (453)
                      .+.    ..-+.+...    .+.....+.+   +|.|||.... ...|..+|++...-..+..   .....+ .|+.  .
T Consensus       188 ~~g----~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~---~~l~~P~glavd~~  256 (400)
T 3p5b_L          188 TKG----VKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLL  256 (400)
T ss_dssp             TTT----CSEEEEEEC----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC---SSCSCEEEEEEETT
T ss_pred             CCC----CceEEEEeC----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE---CCCCceEEEEEEeC
Confidence            554    332222110    0111112333   6899998754 3579999998754433311   111222 2432  3


Q ss_pred             CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEEC
Q 045071          315 NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDL  394 (453)
Q Consensus       315 ~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~  394 (453)
                      +++||++..  ..     .  .|+.++.+...-..+..-+..         ...++.....++.||+.....+.|..+|.
T Consensus       257 ~~~lY~aD~--~~-----~--~I~~~d~dG~~~~~~~~~~~~---------l~~P~gl~v~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          257 SGRLYWVDS--KL-----H--SISSIDVNGGNRKTILEDEKR---------LAHPFSLAVFEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             TTEEEEEET--TT-----T--EEEEEETTSCCCEEEEECSST---------TSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred             CCEEEEEEC--CC-----C--EEEEEeCCCCccEEEEeCCCC---------CCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence            688998653  21     1  667766543332333322111         01244444478999998876788999996


Q ss_pred             CCC
Q 045071          395 CMK  397 (453)
Q Consensus       395 ~~~  397 (453)
                      .+.
T Consensus       319 ~~G  321 (400)
T 3p5b_L          319 LTG  321 (400)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=91.00  E-value=11  Score=35.82  Aligned_cols=197  Identities=13%  Similarity=0.073  Sum_probs=95.0

Q ss_pred             CceEEEEecCCCCeeEEEEcCcccceecCCCCCC-CC-CcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccC
Q 045071          168 GGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLR-PR-LFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAG  245 (453)
Q Consensus       168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~-~r-~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~  245 (453)
                      +|.+++.+...  ..+.++|+.+++.....+... .. .....++...++. ++++.+..        .....+|+.++ 
T Consensus       133 ~~~~~~~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~--------d~~v~~~d~~~-  200 (433)
T 3bws_A          133 NTRLAIPLLED--EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQ--------ANAVHVFDLKT-  200 (433)
T ss_dssp             SSEEEEEBTTS--SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGG--------GTEEEEEETTT-
T ss_pred             CCeEEEEeCCC--CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECC--------CCEEEEEECCC-
Confidence            67777665432  368999999887654333211 01 1122234443333 45554432        12457788766 


Q ss_pred             CCCCcccc-cCCCCCcccCCCCCeEEE-C-CEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceee--eCCeEEE
Q 045071          246 GFFSLWGT-TSSLPRLCSLESGRMVQV-N-GKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLD--SNGKLIL  320 (453)
Q Consensus       246 ~~~~~W~~-~~~~p~~~~~~~~~~v~~-~-G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~--~~g~L~v  320 (453)
                         ..-.. +.. ..  . ......+. + ..+|+.......|..||+.+++.... .+...   .+.-+.  -+|+.++
T Consensus       201 ---~~~~~~~~~-~~--~-~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-~~~~~---~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          201 ---LAYKATVDL-TG--K-WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-TDKIG---LPRGLLLSKDGKELY  269 (433)
T ss_dssp             ---CCEEEEEEC-SS--S-SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-CCCCS---EEEEEEECTTSSEEE
T ss_pred             ---ceEEEEEcC-CC--C-CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-ecCCC---CceEEEEcCCCCEEE
Confidence               22211 110 00  0 00112222 3 35666665557899999998765432 22111   112222  2565555


Q ss_pred             EEEEeccCCC-CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          321 VAAVEKSKLN-VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       321 v~~~~~~~~~-~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      ++........ ....+.+|.++  +.+-......+.          ....+.....++.+|+.....+.+.+||+.+.+.
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~--~~~~~~~~~~~~----------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~  337 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMD--KEKLIDTIGPPG----------NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV  337 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETT--TTEEEEEEEEEE----------CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEECCCCccccCCCeEEEEECC--CCcEEeeccCCC----------CcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence            5554332111 11245666554  332222111111          0012222334668888876678999999987654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=90.88  E-value=4.7  Score=42.31  Aligned_cols=138  Identities=5%  Similarity=0.069  Sum_probs=69.2

Q ss_pred             ceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE-C--CEEEEEecCCCEEEEEECCCCcEE-EeecCCccccCCCce
Q 045071          236 SSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV-N--GKFYCMNYSPFSVLAYDISANAWF-NIQAPMRRFLRSPSL  311 (453)
Q Consensus       236 ~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~-~--G~lY~~~~~~~~i~~yD~~~~~W~-~i~~p~~~~~~~~~l  311 (453)
                      .+.+|+..+    +.|.....+..... .-....+. +  |.+.+.+.....|..||+.+..-. .....  ........
T Consensus        78 ~I~vwd~~~----~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~--~~~~~v~~  150 (753)
T 3jro_A           78 KVLIWKEEN----GRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--AHAIGVNS  150 (753)
T ss_dssp             CEEEEEEET----TEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE--CCSSCEEE
T ss_pred             eEEEEECCC----CcccccccccCCCC-CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee--cCCCceEE
Confidence            457888887    66655433221000 00111222 2  444444444478999999876211 11000  00011111


Q ss_pred             eee---------------CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEe--
Q 045071          312 LDS---------------NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIG--  374 (453)
Q Consensus       312 v~~---------------~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~--  374 (453)
                      +..               ++++++++...       ..+++|.+......+..+..+...          ...+.++.  
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~~~~~h----------~~~V~~l~~s  213 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGAD-------NLVKIWKYNSDAQTYVLESTLEGH----------SDWVRDVAWS  213 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETT-------SCEEEEEEETTTTEEEEEEEECCC----------SSCEEEEEEC
T ss_pred             EEecCcccccccccccCCCCCEEEEEECC-------CeEEEEeccCCcccceeeeeecCC----------CCcEEEEEec
Confidence            111               36666665422       368999998766666665555320          11233332  


Q ss_pred             -eC--CEEEEEEcCCCeEEEEECCCC
Q 045071          375 -HG--EFIVIVIRGSDKALLFDLCMK  397 (453)
Q Consensus       375 -~g--~~I~l~~~~~~~v~~Yd~~~~  397 (453)
                       .+  +.+++.+...+.+.+||+.+.
T Consensus       214 p~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          214 PTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             CCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             cCCCCCCEEEEEecCCEEEEecCCCC
Confidence             21  455555555788999999885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=90.45  E-value=12  Score=35.17  Aligned_cols=188  Identities=13%  Similarity=0.018  Sum_probs=96.7

Q ss_pred             CceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC
Q 045071          168 GGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF  247 (453)
Q Consensus       168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~  247 (453)
                      .+.|++...    ..+..+++-......+-.-    .....++.++....+||++....        .....++.+.   
T Consensus        44 ~~~ll~~~~----~~I~~i~~~g~~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~~--------~~I~r~~~~g---  104 (349)
T 3v64_C           44 EPVLLFANR----IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVTL--------DRILRANLNG---  104 (349)
T ss_dssp             CCEEEEECB----SCEEEECTTSCCEEEEECS----CSCEEEEEEETTTTEEEEEETTT--------TEEEEEETTS---
T ss_pred             CceeEeecc----cceEEEeCCCCeeEEeecC----CCceEEEEEeccccEEEEEeccC--------CceEEEecCC---
Confidence            345554432    2466777766555443211    11245777776566788875421        2345566554   


Q ss_pred             CCcccccCCCCCcccCCCCCeEE--ECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeEEEEE
Q 045071          248 FSLWGTTSSLPRLCSLESGRMVQ--VNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLILVA  322 (453)
Q Consensus       248 ~~~W~~~~~~p~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~vv~  322 (453)
                       ..-+.+.....  . .....++  .+|.|||.......|.++|++...-..+...   ....+ .++.  .+|.||+..
T Consensus       105 -~~~~~~~~~~~--~-~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          105 -SNVEEVVSTGL--E-SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---SLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             -CSCEEEECSSC--S-CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT---TCSCEEEEEEETTTTEEEEEE
T ss_pred             -CCceEEEeCCC--C-CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC---CCCCcceEEEecCcCeEEEec
Confidence             33222211100  0 0112233  3689999988778999999987654433211   11222 3333  368888765


Q ss_pred             EEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc
Q 045071          323 AVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS  398 (453)
Q Consensus       323 ~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~  398 (453)
                      ...        .-+|++++.+...-+.+..  ..    +.   ...++..-..++.||+.....++|.++|++...
T Consensus       178 ~~~--------~~~I~r~~~dG~~~~~~~~--~~----~~---~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~  236 (349)
T 3v64_C          178 WGN--------TPRIEASSMDGSGRRIIAD--TH----LF---WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  236 (349)
T ss_dssp             CSS--------SCEEEEEETTSCSCEESCC--SS----CS---CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCC--------CCEEEEEeCCCCCcEEEEE--CC----CC---CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence            311        1167777754322222111  10    00   001222222578999987777889999987654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.20  E-value=11  Score=34.33  Aligned_cols=189  Identities=11%  Similarity=0.041  Sum_probs=93.7

Q ss_pred             CceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC
Q 045071          168 GGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF  247 (453)
Q Consensus       168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~  247 (453)
                      .+.+++....  ...+.++|+.+++....-...   .... ++.+.+++-.+++++...        ....+||..+   
T Consensus         9 ~~~~~v~~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~-~~~~s~dg~~l~~~~~~~--------~~i~~~d~~~---   71 (331)
T 3u4y_A            9 SNFGIVVEQH--LRRISFFSTDTLEILNQITLG---YDFV-DTAITSDCSNVVVTSDFC--------QTLVQIETQL---   71 (331)
T ss_dssp             CCEEEEEEGG--GTEEEEEETTTCCEEEEEECC---CCEE-EEEECSSSCEEEEEESTT--------CEEEEEECSS---
T ss_pred             CCEEEEEecC--CCeEEEEeCcccceeeeEEcc---CCcc-eEEEcCCCCEEEEEeCCC--------CeEEEEECCC---
Confidence            4555555432  237888999888764432221   1122 556655544566654421        2447777776   


Q ss_pred             CCcc--cccCCCCCcccCCCCC-eEEE-CC-EEEEEecCC-C--EEEEEECCCCcEEEeecCCccccCCCcee-eeCCe-
Q 045071          248 FSLW--GTTSSLPRLCSLESGR-MVQV-NG-KFYCMNYSP-F--SVLAYDISANAWFNIQAPMRRFLRSPSLL-DSNGK-  317 (453)
Q Consensus       248 ~~~W--~~~~~~p~~~~~~~~~-~v~~-~G-~lY~~~~~~-~--~i~~yD~~~~~W~~i~~p~~~~~~~~~lv-~~~g~-  317 (453)
                       +.-  .......     .... .++. +| .+| ..... .  .|..||+.+++.... .+...  ....++ .-+|+ 
T Consensus        72 -~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~--~~~~~~~spdg~~  141 (331)
T 3u4y_A           72 -EPPKVVAIQEGQ-----SSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFIST-IPIPY--DAVGIAISPNGNG  141 (331)
T ss_dssp             -SSCEEEEEEECS-----SCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEE-EECCT--TEEEEEECTTSSC
T ss_pred             -CceeEEecccCC-----CCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEE-EECCC--CccceEECCCCCE
Confidence             332  1111100     0112 2232 34 466 43332 2  899999998775433 12111  111222 23565 


Q ss_pred             EEEEEEEeccCCCCCCc-EEEEEeecCCCCeEEE--eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEEC
Q 045071          318 LILVAAVEKSKLNVPKS-LRLWSLQACGTLWAEI--ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDL  394 (453)
Q Consensus       318 L~vv~~~~~~~~~~~~~-i~vw~ld~~~~~W~~v--~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~  394 (453)
                      ||+.+. ..      .. +.+|.++.. +.-...  ..++.        ......+.....|+.+|+.....+.+.+||+
T Consensus       142 l~~~~~-~~------~~~i~~~~~~~~-g~~~~~~~~~~~~--------~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  205 (331)
T 3u4y_A          142 LILIDR-SS------ANTVRRFKIDAD-GVLFDTGQEFISG--------GTRPFNITFTPDGNFAFVANLIGNSIGILET  205 (331)
T ss_dssp             EEEEEE-TT------TTEEEEEEECTT-CCEEEEEEEEECS--------SSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEEEec-CC------CceEEEEEECCC-CcEeecCCccccC--------CCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            665443 21      24 789988853 222221  11111        0000122222356678888766789999999


Q ss_pred             CCCce
Q 045071          395 CMKSW  399 (453)
Q Consensus       395 ~~~~W  399 (453)
                      ++.+.
T Consensus       206 ~~~~~  210 (331)
T 3u4y_A          206 QNPEN  210 (331)
T ss_dssp             SSTTS
T ss_pred             CCCcc
Confidence            88764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=89.77  E-value=5  Score=37.04  Aligned_cols=122  Identities=11%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             CCEEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCC-cee-eeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCe
Q 045071          272 NGKFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSP-SLL-DSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLW  347 (453)
Q Consensus       272 ~G~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv-~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W  347 (453)
                      +|++|+....  ...|..||+.+++++.+..... ....+ .++ .-+|+.++++...      ...+.+|.++. .+..
T Consensus        50 dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~-~g~~  121 (347)
T 3hfq_A           50 KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAA-DGAL  121 (347)
T ss_dssp             TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECT-TSCE
T ss_pred             CCeEEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCC-CCCe
Confidence            6888887652  3689999998888766533111 11222 232 3456644444321      23678998875 3445


Q ss_pred             EEEeecCHHHHHHhhcccCCCc--EEEEeeCCEEEEEEcCCCeEEEEECC-CCceEEc
Q 045071          348 AEIERMPQQLYAQFAEIEAGNG--FDTIGHGEFIVIVIRGSDKALLFDLC-MKSWQWI  402 (453)
Q Consensus       348 ~~v~~mp~~~~~~~~~~~~~~~--~~~~~~g~~I~l~~~~~~~v~~Yd~~-~~~W~~l  402 (453)
                      ..+..+...-..-.........  +.....|. +|+.....+.+.+||+. +++...+
T Consensus       122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             EEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             eecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEe
Confidence            4444432100000000000001  12222455 88777667889999998 5555543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=89.59  E-value=8.7  Score=34.62  Aligned_cols=176  Identities=7%  Similarity=0.040  Sum_probs=81.1

Q ss_pred             eeEEEEcCcccc--eecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCC
Q 045071          181 KTLILCNPVTGS--LSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLP  258 (453)
Q Consensus       181 ~~~~v~NP~T~~--w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p  258 (453)
                      ..+.++|+.|++  |+.-..- ... ..  .+...+++ ++++.+.          ..+..||. +|.  -.|+.-....
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~-~~~-~~--~~~~~pdG-~ilvs~~----------~~V~~~d~-~G~--~~W~~~~~~~   76 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEK-GWE-CN--SVAATKAG-EILFSYS----------KGAKMITR-DGR--ELWNIAAPAG   76 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCT-TCC-CC--EEEECTTS-CEEEECB----------SEEEEECT-TSC--EEEEEECCTT
T ss_pred             CEEEEEECCCCeEEEEeCCCc-cCC-Cc--CeEECCCC-CEEEeCC----------CCEEEECC-CCC--EEEEEcCCCC
Confidence            478888988876  4432211 011 12  23333333 3444322          13466776 433  5676533110


Q ss_pred             CcccCCCCCeEEECCEEEEEecC-CCEEEEEECCCCcEEEeecCC--ccccCCCce--eeeCCeEEEEEEEeccCCCCCC
Q 045071          259 RLCSLESGRMVQVNGKFYCMNYS-PFSVLAYDISANAWFNIQAPM--RRFLRSPSL--LDSNGKLILVAAVEKSKLNVPK  333 (453)
Q Consensus       259 ~~~~~~~~~~v~~~G~lY~~~~~-~~~i~~yD~~~~~W~~i~~p~--~~~~~~~~l--v~~~g~L~vv~~~~~~~~~~~~  333 (453)
                      .  ... ......+|.+++.... ...++++|++.+.-.......  ......+..  ...+|.++++.. ..      .
T Consensus        77 ~--~~~-~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~------~  146 (276)
T 3no2_A           77 C--EMQ-TARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-AT------S  146 (276)
T ss_dssp             C--EEE-EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TT------T
T ss_pred             c--ccc-ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CC------C
Confidence            0  110 1123346777766554 568899998655322232211  111111111  234677765442 11      1


Q ss_pred             cEEEEEeecC-CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071          334 SLRLWSLQAC-GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       334 ~i~vw~ld~~-~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                        .|.++|.. +..|+.-.  +.          ......... ++.+++......+++.+|+++.+.
T Consensus       147 --~v~~~d~~G~~~w~~~~--~~----------~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          147 --EVREIAPNGQLLNSVKL--SG----------TPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             --EEEEECTTSCEEEEEEC--SS----------CCCEEEECT-TSCEEEECBTTSEEEEECTTTCCE
T ss_pred             --EEEEECCCCCEEEEEEC--CC----------CccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcE
Confidence              45555654 34465322  11          001122222 344555544456899999997653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=89.55  E-value=5.6  Score=35.93  Aligned_cols=137  Identities=18%  Similarity=0.117  Sum_probs=80.1

Q ss_pred             eEEECCEEEEEecCCCEEEEEECCCCcE-EEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCC
Q 045071          268 MVQVNGKFYCMNYSPFSVLAYDISANAW-FNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTL  346 (453)
Q Consensus       268 ~v~~~G~lY~~~~~~~~i~~yD~~~~~W-~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~  346 (453)
                      ....++++|.++.....+.+||.++.+- ..++.+.    ....+...+++||+..+  .+        +|+.+|+.+.+
T Consensus       101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~----eGwGLt~Dg~~L~vSdG--s~--------~l~~iDp~T~~  166 (268)
T 3nok_A          101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG----EGWGLCYWNGKLVRSDG--GT--------MLTFHEPDGFA  166 (268)
T ss_dssp             EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSS----CCCCEEEETTEEEEECS--SS--------EEEEECTTTCC
T ss_pred             EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC----ceeEEecCCCEEEEECC--CC--------EEEEEcCCCCe
Confidence            4556789999998778999999998654 3344331    22355666777887542  21        78889976554


Q ss_pred             eEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce-EEcC--CC-CCc---CCCCCCCCCCC
Q 045071          347 WAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW-QWIP--RC-PYV---QANNCGGNYGD  419 (453)
Q Consensus       347 W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W-~~l~--~~-p~~---~~~~~~~~~~~  419 (453)
                      =  +.+++... ... ....-..+.++  ++.||+.....+.|.+-|+++++- .++.  .+ +..   ..      .  
T Consensus       167 v--~~~I~V~~-~g~-~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~------~--  232 (268)
T 3nok_A          167 L--VGAVQVKL-RGQ-PVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVT------N--  232 (268)
T ss_dssp             E--EEEEECEE-TTE-ECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCC------C--
T ss_pred             E--EEEEEeCC-CCc-ccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccccc------C--
Confidence            3  33332100 000 00000123333  678998777788999999999864 3332  11 100   11      0  


Q ss_pred             CCceeEEEEeccc
Q 045071          420 GEGELHGFAYEPR  432 (453)
Q Consensus       420 ~~~~~~~~~f~P~  432 (453)
                      .+..+.|++|.|.
T Consensus       233 ~~~vlNGIA~dp~  245 (268)
T 3nok_A          233 PEAVLNGIAVEPG  245 (268)
T ss_dssp             TTCCEEEEEECTT
T ss_pred             cCCceEEEEEcCC
Confidence            1236789999995

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=89.11  E-value=2.3  Score=38.89  Aligned_cols=140  Identities=13%  Similarity=0.117  Sum_probs=74.5

Q ss_pred             CC-EEEEEecCCCEEEEEECC--CCcEEEee--cCCccc---cCCC-cee-eeCCeEEEEEEEeccCCCCCCcEEEEEee
Q 045071          272 NG-KFYCMNYSPFSVLAYDIS--ANAWFNIQ--APMRRF---LRSP-SLL-DSNGKLILVAAVEKSKLNVPKSLRLWSLQ  341 (453)
Q Consensus       272 ~G-~lY~~~~~~~~i~~yD~~--~~~W~~i~--~p~~~~---~~~~-~lv-~~~g~L~vv~~~~~~~~~~~~~i~vw~ld  341 (453)
                      +| .+|+.......+..||+.  ++++..+.  ...+..   ...+ .+. .-+|+.+++....      ...+.+|.++
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~  261 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVS  261 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEc
Confidence            45 477776555789999985  35443221  111111   1111 122 2345544433311      2367899888


Q ss_pred             cCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEE--ECCCCceEEcCCCCCcCCCCCCCCCCC
Q 045071          342 ACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLF--DLCMKSWQWIPRCPYVQANNCGGNYGD  419 (453)
Q Consensus       342 ~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Y--d~~~~~W~~l~~~p~~~~~~~~~~~~~  419 (453)
                      ...+.++.+..++...        ....+.....|+.+|+.....+.+.+|  |.++++++.+...+..           
T Consensus       262 ~~~~~~~~~~~~~~~~--------~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-----------  322 (343)
T 1ri6_A          262 EDGSVLSKEGFQPTET--------QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-----------  322 (343)
T ss_dssp             TTSCCEEEEEEEECSS--------SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-----------
T ss_pred             CCCCceEEeeeecCCC--------ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-----------
Confidence            6566777776654310        112333334577888876556788888  6668888877655431           


Q ss_pred             CCceeEEEEeccccCCchh
Q 045071          420 GEGELHGFAYEPRLATPVT  438 (453)
Q Consensus       420 ~~~~~~~~~f~P~l~~~~~  438 (453)
                        ....+++|.|.-..+..
T Consensus       323 --~~p~~i~~~~~~~~~~~  339 (343)
T 1ri6_A          323 --QGPMWVVVNAHEGGSHH  339 (343)
T ss_dssp             --SSCCEEEEEEEC-----
T ss_pred             --CCCeeEEEEcccCCccc
Confidence              13457777776655433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=88.76  E-value=17  Score=34.76  Aligned_cols=183  Identities=10%  Similarity=-0.048  Sum_probs=91.4

Q ss_pred             eEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC-CCcccccCCCCCc
Q 045071          182 TLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF-FSLWGTTSSLPRL  260 (453)
Q Consensus       182 ~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~-~~~W~~~~~~p~~  260 (453)
                      .+...++.++.+..+-+    ......++.++...-+||++....        .....++...... ......+..    
T Consensus        93 ~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~~~--------~~I~~~~~~g~~~~~~~~~~~~~----  156 (400)
T 3p5b_L           93 EVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSSYDTVISR----  156 (400)
T ss_dssp             EEEEECTTSCSCEEEEC----SCSCEEEEEEETTTTEEEEEETTT--------TEEEEEEC------CCCEEEECS----
T ss_pred             eeEEEccCCcceeEecc----ccCcceEEeeeeccCceEEEecCC--------CeEEEEEcccCCCCCcceEEEeC----
Confidence            56777777665544421    122345777776566888875431        1234444433100 001111111    


Q ss_pred             ccCCCCCe-EE--ECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeEEEEEEEeccCCCCCCc
Q 045071          261 CSLESGRM-VQ--VNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLILVAAVEKSKLNVPKS  334 (453)
Q Consensus       261 ~~~~~~~~-v~--~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~vv~~~~~~~~~~~~~  334 (453)
                       ......+ ++  .++.|||.......|.++|++...-..+...   ....+ .|+.  .+|.||+... ...     . 
T Consensus       157 -~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~---~~~~P~~iavdp~~g~ly~td~-~~~-----~-  225 (400)
T 3p5b_L          157 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDW-GTP-----A-  225 (400)
T ss_dssp             -SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC---SSCCEEEEEEETTTTEEEEEEC-SSS-----C-
T ss_pred             -CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC---CCCCcceEEEecccCeEEEEeC-CCC-----C-
Confidence             0111122 33  3689999988778999999998765544221   11222 2333  3688887542 111     1 


Q ss_pred             EEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEE
Q 045071          335 LRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQW  401 (453)
Q Consensus       335 i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~  401 (453)
                       .|++++.+...=+.+..  .    ++.   ...++..-..+++||+.......|.++|++...-+.
T Consensus       226 -~I~~~~~dG~~~~~~~~--~----~l~---~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~  282 (400)
T 3p5b_L          226 -KIKKGGLNGVDIYSLVT--E----NIQ---WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  282 (400)
T ss_dssp             -CEEEEETTSCSCEEEEC--S----SCS---CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEE
T ss_pred             -EEEEEeCCCCccEEEEE--C----CCC---ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEE
Confidence             46666653222122211  0    000   001233222478899987767888888887654433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=88.72  E-value=12  Score=32.83  Aligned_cols=191  Identities=11%  Similarity=0.072  Sum_probs=89.6

Q ss_pred             eecCceEEE-EecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcc
Q 045071          165 SSSGGLVCW-VSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHID  243 (453)
Q Consensus       165 ~s~~Gll~~-~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~  243 (453)
                      ...+|.+++ ....  ...+.++|+-++....++......   ..++..++++ ++++....         ....+|+..
T Consensus        31 ~~~~g~l~v~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---p~~i~~~~~g-~l~v~~~~---------~~i~~~d~~   95 (270)
T 1rwi_B           31 VDSAGNVYVTSEGM--YGRVVKLATGSTGTTVLPFNGLYQ---PQGLAVDGAG-TVYVTDFN---------NRVVTLAAG   95 (270)
T ss_dssp             ECTTCCEEEEECSS--SCEEEEECC-----EECCCCSCCS---CCCEEECTTC-CEEEEETT---------TEEEEECTT
T ss_pred             ECCCCCEEEEccCC--CCcEEEecCCCcccceEeeCCcCC---cceeEECCCC-CEEEEcCC---------CEEEEEeCC
Confidence            344566666 4222  247888998777655543221111   1245555443 36655431         123556655


Q ss_pred             cCCCCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-ceee-eCCeEE
Q 045071          244 AGGFFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD-SNGKLI  319 (453)
Q Consensus       244 ~~~~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~-~~g~L~  319 (453)
                      .    ..-..... ..   ......+.+  +|.+|+.......|..||..+........  . ....+ .++. -+|+||
T Consensus        96 ~----~~~~~~~~-~~---~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~--~-~~~~p~~i~~~~~g~l~  164 (270)
T 1rwi_B           96 S----NNQTVLPF-DG---LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--T-GLNDPDGVAVDNSGNVY  164 (270)
T ss_dssp             C----SCCEECCC-CS---CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC--C-SCCSCCCEEECTTCCEE
T ss_pred             C----ceEeeeec-CC---cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc--c-cCCCceeEEEeCCCCEE
Confidence            4    32222211 10   000112333  67899887655689999877665433211  1 11122 3433 368888


Q ss_pred             EEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEE-EEeeCCEEEEEEcCCCeEEEEECCCCc
Q 045071          320 LVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFD-TIGHGEFIVIVIRGSDKALLFDLCMKS  398 (453)
Q Consensus       320 vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~~~~g~~I~l~~~~~~~v~~Yd~~~~~  398 (453)
                      +...  ..     .  .|+.++.....-... ....     +     ..... ++..++.||+.....+.+..||..++.
T Consensus       165 v~~~--~~-----~--~i~~~~~~~~~~~~~-~~~~-----~-----~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          165 VTDT--DN-----N--RVVKLEAESNNQVVL-PFTD-----I-----TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             EEEG--GG-----T--EEEEECTTTCCEEEC-CCSS-----C-----CSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             EEEC--CC-----C--EEEEEecCCCceEee-cccC-----C-----CCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            7542  11     1  556666543332211 1110     0     01122 222244888887667889999998765


Q ss_pred             eEE
Q 045071          399 WQW  401 (453)
Q Consensus       399 W~~  401 (453)
                      -..
T Consensus       225 ~~~  227 (270)
T 1rwi_B          225 STV  227 (270)
T ss_dssp             CEE
T ss_pred             cee
Confidence            433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=88.63  E-value=27  Score=36.89  Aligned_cols=110  Identities=9%  Similarity=-0.059  Sum_probs=61.4

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeE
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWA  348 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~  348 (453)
                      ++.|||.......|.++|+....-+.+...   ....+ .|+.  .+|.||+... ...     .  +|++.+.+...=+
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~---~l~~P~gIaVDp~~g~LYwtD~-g~~-----~--~I~~~~~dG~~~~  550 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDW-GTP-----A--KIKKGGLNGVDIY  550 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEEC---TTCCEEEEEEETTTTEEEEEEC-SSS-----C--EEEEEETTSCCEE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeC---CCCCcceEEEecCCCCEEEecC-CCC-----C--eEEEEecCCCceE
Confidence            579999988778999999997765554221   11223 3433  3688997652 111     1  5666665433222


Q ss_pred             EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEE
Q 045071          349 EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQW  401 (453)
Q Consensus       349 ~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~  401 (453)
                      .+..  .    .+.   ...++..-..+++||+......+|.++|+....-+.
T Consensus       551 ~lv~--~----~l~---~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~  594 (791)
T 3m0c_C          551 SLVT--E----NIQ---WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  594 (791)
T ss_dssp             EEEC--S----SCS---CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             EEEe--C----CCC---CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE
Confidence            2211  0    000   001222222477888887667788888887654333

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=88.38  E-value=16  Score=34.38  Aligned_cols=193  Identities=9%  Similarity=-0.002  Sum_probs=87.8

Q ss_pred             eeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcc
Q 045071          164 ASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHID  243 (453)
Q Consensus       164 ~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~  243 (453)
                      ++..++.++..+..   ..+.+||..+++...+-....  .....++...+++-.+++.+.+         -...+|+..
T Consensus        99 ~~~s~~~l~~~~~d---~~v~lw~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~d---------g~i~iwd~~  164 (401)
T 4aez_A           99 LDWSNLNVVAVALE---RNVYVWNADSGSVSALAETDE--STYVASVKWSHDGSFLSVGLGN---------GLVDIYDVE  164 (401)
T ss_dssp             EEECTTSEEEEEET---TEEEEEETTTCCEEEEEECCT--TCCEEEEEECTTSSEEEEEETT---------SCEEEEETT
T ss_pred             EeecCCCEEEEECC---CeEEEeeCCCCcEeEeeecCC--CCCEEEEEECCCCCEEEEECCC---------CeEEEEECc
Confidence            34334444444332   378999998887655433321  1223345555544344433322         245788876


Q ss_pred             cCCCCCcccc-cCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceee--eCCeEEE
Q 045071          244 AGGFFSLWGT-TSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLD--SNGKLIL  320 (453)
Q Consensus       244 ~~~~~~~W~~-~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~--~~g~L~v  320 (453)
                      +    +.-.. +.....  .   -..+..++.+.+.+.....|..||+....-.....  ........-+.  -+|++++
T Consensus       165 ~----~~~~~~~~~~~~--~---v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~  233 (401)
T 4aez_A          165 S----QTKLRTMAGHQA--R---VGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL--QGHSSEVCGLAWRSDGLQLA  233 (401)
T ss_dssp             T----CCEEEEECCCSS--C---EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE--ECCSSCEEEEEECTTSSEEE
T ss_pred             C----CeEEEEecCCCC--c---eEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE--cCCCCCeeEEEEcCCCCEEE
Confidence            6    32211 111000  0   11233345444444445789999998433211111  11111111122  2577776


Q ss_pred             EEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc--CCCeEEEEECCCCc
Q 045071          321 VAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR--GSDKALLFDLCMKS  398 (453)
Q Consensus       321 v~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~--~~~~v~~Yd~~~~~  398 (453)
                      ++...       ..+.||.+...  .  .+..+...       ......+.....++.+++...  ..+.+.+||+.+.+
T Consensus       234 s~~~d-------~~v~iwd~~~~--~--~~~~~~~~-------~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~  295 (401)
T 4aez_A          234 SGGND-------NVVQIWDARSS--I--PKFTKTNH-------NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA  295 (401)
T ss_dssp             EEETT-------SCEEEEETTCS--S--EEEEECCC-------SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred             EEeCC-------CeEEEccCCCC--C--ccEEecCC-------cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence            66522       25788976632  1  22222110       000112222223445555443  36778888887764


Q ss_pred             e
Q 045071          399 W  399 (453)
Q Consensus       399 W  399 (453)
                      .
T Consensus       296 ~  296 (401)
T 4aez_A          296 R  296 (401)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=88.35  E-value=16  Score=37.03  Aligned_cols=196  Identities=10%  Similarity=-0.001  Sum_probs=101.9

Q ss_pred             CceEEEEecCCCCeeEEEEcCccccee-cCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCC
Q 045071          168 GGLVCWVSDHAGAKTLILCNPVTGSLS-QLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGG  246 (453)
Q Consensus       168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~-~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~  246 (453)
                      ++++++....  ...+.|+|+.|++-. .++.-..     ..++.+.+++-.+|+.+.+         ..+.+||...  
T Consensus       166 ~~~~~V~~~~--~~~V~viD~~t~~v~~~i~~g~~-----p~~v~~SpDGr~lyv~~~d---------g~V~viD~~~--  227 (567)
T 1qks_A          166 ENLFSVTLRD--AGQIALIDGSTYEIKTVLDTGYA-----VHISRLSASGRYLFVIGRD---------GKVNMIDLWM--  227 (567)
T ss_dssp             GGEEEEEETT--TTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSCEEEEEETT---------SEEEEEETTS--
T ss_pred             CceEEEEeCC--CCeEEEEECCCCeEEEEEeCCCC-----ccceEECCCCCEEEEEcCC---------CeEEEEECCC--
Confidence            4566666543  347999999998654 3332111     1245565555456665432         2357777741  


Q ss_pred             CCCcccccCCCCCcccCCCCCeEEE-----CC-EEEEEecCCCEEEEEECCCCcEEE-eecCC-cc-c---c---CCCce
Q 045071          247 FFSLWGTTSSLPRLCSLESGRMVQV-----NG-KFYCMNYSPFSVLAYDISANAWFN-IQAPM-RR-F---L---RSPSL  311 (453)
Q Consensus       247 ~~~~W~~~~~~p~~~~~~~~~~v~~-----~G-~lY~~~~~~~~i~~yD~~~~~W~~-i~~p~-~~-~---~---~~~~l  311 (453)
                        .+-+.+..++....  ....++.     +| .+|+..+....+.++|..+.+-.. ++... +. .   .   +...+
T Consensus       228 --~t~~~v~~i~~G~~--P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i  303 (567)
T 1qks_A          228 --KEPTTVAEIKIGSE--ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  303 (567)
T ss_dssp             --SSCCEEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             --CCCcEeEEEecCCC--CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence              11122222211000  0123343     45 588888777899999988865433 32211 00 0   0   11123


Q ss_pred             ee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEE
Q 045071          312 LD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKAL  390 (453)
Q Consensus       312 v~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~  390 (453)
                      +. .++..+++.. ....       +||.+|.......++..++...   +.     ..+.....|.++|+.....+++.
T Consensus       304 ~~s~~~~~~vv~~-~~~g-------~v~~vd~~~~~~~~v~~i~~~~---~~-----~d~~~~pdgr~~~va~~~sn~V~  367 (567)
T 1qks_A          304 LASHYRPEFIVNV-KETG-------KILLVDYTDLNNLKTTEISAER---FL-----HDGGLDGSHRYFITAANARNKLV  367 (567)
T ss_dssp             EECSSSSEEEEEE-TTTT-------EEEEEETTCSSEEEEEEEECCS---SE-----EEEEECTTSCEEEEEEGGGTEEE
T ss_pred             EEcCCCCEEEEEe-cCCC-------eEEEEecCCCccceeeeeeccc---cc-----cCceECCCCCEEEEEeCCCCeEE
Confidence            32 2345555554 2211       7777776655565665553210   00     01122234677888776678999


Q ss_pred             EEECCCCceEE
Q 045071          391 LFDLCMKSWQW  401 (453)
Q Consensus       391 ~Yd~~~~~W~~  401 (453)
                      ++|.++++...
T Consensus       368 ViD~~t~kl~~  378 (567)
T 1qks_A          368 VIDTKEGKLVA  378 (567)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEECCCCcEEE
Confidence            99999987543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=88.12  E-value=17  Score=34.12  Aligned_cols=119  Identities=9%  Similarity=0.129  Sum_probs=59.7

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCce-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEE
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEI  350 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v  350 (453)
                      +|.+.+.+.....|..||+.+.+-...............+ ..-+|++++++....    ....+.||.+......- ..
T Consensus       187 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~----~d~~i~iwd~~~~~~~~-~~  261 (402)
T 2aq5_A          187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM----SERQVALWDTKHLEEPL-SL  261 (402)
T ss_dssp             TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT----CCEEEEEEETTBCSSCS-EE
T ss_pred             CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC----CCceEEEEcCccccCCc-eE
Confidence            4554444444478999999987653321111111111122 224677776653111    12367888776432211 12


Q ss_pred             eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc--eEEcC
Q 045071          351 ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS--WQWIP  403 (453)
Q Consensus       351 ~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~--W~~l~  403 (453)
                      ..+...        .....+.....++.+++.+...+.+.+||+.+.+  ...+.
T Consensus       262 ~~~~~~--------~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~  308 (402)
T 2aq5_A          262 QELDTS--------SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS  308 (402)
T ss_dssp             EECCCC--------SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred             EeccCC--------CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence            222210        0111122233567787776667899999999876  44443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=87.61  E-value=20  Score=36.40  Aligned_cols=109  Identities=13%  Similarity=0.014  Sum_probs=62.3

Q ss_pred             CCEEEEEecCCC--EEEEEECCCCcEEEeecCCccccC-------CCceee-eCCeEEEEEEEeccCCCCCCcEEEEEee
Q 045071          272 NGKFYCMNYSPF--SVLAYDISANAWFNIQAPMRRFLR-------SPSLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQ  341 (453)
Q Consensus       272 ~G~lY~~~~~~~--~i~~yD~~~~~W~~i~~p~~~~~~-------~~~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld  341 (453)
                      +|++|+......  .|..+|+.++++..+.. ......       ...+.- -+|++++.+..        ...+||.++
T Consensus       252 dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~d  322 (662)
T 3azo_A          252 DGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK--------GAAVLGILD  322 (662)
T ss_dssp             TSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS--------SSCEEEEEE
T ss_pred             CCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc--------CccEEEEEE
Confidence            688887765433  79999998888876522 111111       012222 26787765532        145899998


Q ss_pred             cCCCCeEEEeecCHHHHHHhhcccCCCcEE-E-EeeCCEEEEEEcC---CCeEEEEECCCCceEEc
Q 045071          342 ACGTLWAEIERMPQQLYAQFAEIEAGNGFD-T-IGHGEFIVIVIRG---SDKALLFDLCMKSWQWI  402 (453)
Q Consensus       342 ~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~-~~~g~~I~l~~~~---~~~v~~Yd~~~~~W~~l  402 (453)
                      ...+....   +...          ...+. + ...++.+++...+   ...++.+|+.+++.+.+
T Consensus       323 ~~~~~~~~---l~~~----------~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          323 PESGELVD---AAGP----------WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             TTTTEEEE---CCSS----------CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             CCCCcEEE---ecCC----------CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            76554433   3210          01112 2 2357777665433   24788889988887766

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=87.52  E-value=16  Score=33.72  Aligned_cols=148  Identities=9%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             eEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcc
Q 045071          182 TLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLC  261 (453)
Q Consensus       182 ~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~  261 (453)
                      .+.++|..++++...............++...+++..++..+.+         ..+.+|+...    +.+..+..+....
T Consensus        39 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D---------~~v~iw~~~~----~~~~~~~~~~~h~  105 (345)
T 3fm0_A           39 RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD---------ATTCIWKKNQ----DDFECVTTLEGHE  105 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECC----C-EEEEEEECCCS
T ss_pred             eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC---------CcEEEEEccC----CCeEEEEEccCCC
Confidence            56677776665532211111111223345555544444443332         2346777666    4443322221100


Q ss_pred             cCCCCCeEEE-CCEEEEEecCCCEEEEEECCCCc-EEEeecCCccccCCCceee--eCCeEEEEEEEeccCCCCCCcEEE
Q 045071          262 SLESGRMVQV-NGKFYCMNYSPFSVLAYDISANA-WFNIQAPMRRFLRSPSLLD--SNGKLILVAAVEKSKLNVPKSLRL  337 (453)
Q Consensus       262 ~~~~~~~v~~-~G~lY~~~~~~~~i~~yD~~~~~-W~~i~~p~~~~~~~~~lv~--~~g~L~vv~~~~~~~~~~~~~i~v  337 (453)
                      . .-....+. +|.+.+.+.....|..+|+.++. +..+.. ...+.....-+.  -+|++++.+.. +      ..+++
T Consensus       106 ~-~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~-d------~~i~~  176 (345)
T 3fm0_A          106 N-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-LNSHTQDVKHVVWHPSQELLASASY-D------DTVKL  176 (345)
T ss_dssp             S-CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-ECCCCSCEEEEEECSSSSCEEEEET-T------SCEEE
T ss_pred             C-CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-ecCcCCCeEEEEECCCCCEEEEEeC-C------CcEEE
Confidence            0 00011221 35444444444678889987653 332211 111111111122  25666655542 2      26799


Q ss_pred             EEeecCCCCeEEEeec
Q 045071          338 WSLQACGTLWAEIERM  353 (453)
Q Consensus       338 w~ld~~~~~W~~v~~m  353 (453)
                      |.++  ...|..+..+
T Consensus       177 w~~~--~~~~~~~~~~  190 (345)
T 3fm0_A          177 YREE--EDDWVCCATL  190 (345)
T ss_dssp             EEEE--TTEEEEEEEE
T ss_pred             EEec--CCCEEEEEEe
Confidence            9876  4567655554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=87.38  E-value=21  Score=34.14  Aligned_cols=218  Identities=11%  Similarity=0.078  Sum_probs=109.0

Q ss_pred             ecCc-eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEccc
Q 045071          166 SSGG-LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDA  244 (453)
Q Consensus       166 s~~G-ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~  244 (453)
                      +-+| .|++.........++++|..+++.+.+.....    ...++...+++-++++.+....      .....+|+..+
T Consensus       187 Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~----~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~~  256 (415)
T 2hqs_A          187 SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLAS  256 (415)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS----CEEEEEECTTSSEEEEEECTTS------SCEEEEEETTT
T ss_pred             cCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC----cccCEEEcCCCCEEEEEEecCC------CceEEEEECCC
Confidence            3344 34444333223579999999988766543321    2234555555555664443211      12346677766


Q ss_pred             CCCCCcccccCCCCCcccCCCCCeEEE-CCE-EEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEE
Q 045071          245 GGFFSLWGTTSSLPRLCSLESGRMVQV-NGK-FYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLIL  320 (453)
Q Consensus       245 ~~~~~~W~~~~~~p~~~~~~~~~~v~~-~G~-lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~v  320 (453)
                          +....+.....  ..  ....+. +|. |++....  ...|..+|+.+++-..+.... ..... ....-+|+.++
T Consensus       257 ----~~~~~l~~~~~--~~--~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~-~~~spdG~~l~  326 (415)
T 2hqs_A          257 ----GQIRQVTDGRS--NN--TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG-SQNQD-ADVSSDGKFMV  326 (415)
T ss_dssp             ----CCEEECCCCSS--CE--EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS-SEEEE-EEECTTSSEEE
T ss_pred             ----CCEEeCcCCCC--cc--cceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC-CcccC-eEECCCCCEEE
Confidence                44443322111  00  112222 454 5555432  237889999987754432211 00000 11223677665


Q ss_pred             EEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC--CeEEEEECCCCc
Q 045071          321 VAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS--DKALLFDLCMKS  398 (453)
Q Consensus       321 v~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~--~~v~~Yd~~~~~  398 (453)
                      ++.....      ...|+.++..+++...+..-.           ..........|..|++.....  ..+.++|+..+.
T Consensus       327 ~~~~~~g------~~~i~~~d~~~~~~~~l~~~~-----------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          327 MVSSNGG------QQHIAKQDLATGGVQVLSSTF-----------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEECSS------CEEEEEEETTTCCEEECCCSS-----------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             EEECcCC------ceEEEEEECCCCCEEEecCCC-----------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence            5543321      235555565555554322110           001222233566676654432  379999999888


Q ss_pred             eEEcCCCCCcCCCCCCCCCCCCCceeEEEEeccccCC
Q 045071          399 WQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLAT  435 (453)
Q Consensus       399 W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~f~P~l~~  435 (453)
                      .+.++.-               ...+...+|.|.++-
T Consensus       390 ~~~l~~~---------------~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          390 KARLPAT---------------DGQVKFPAWSPYLHH  411 (415)
T ss_dssp             EEECCCS---------------SSEEEEEEECCCCCC
T ss_pred             EEEeeCC---------------CCCCcCCcccccccc
Confidence            7777532               125778888887764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=85.81  E-value=7.1  Score=37.15  Aligned_cols=100  Identities=7%  Similarity=0.002  Sum_probs=49.8

Q ss_pred             eEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcc
Q 045071          182 TLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLC  261 (453)
Q Consensus       182 ~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~  261 (453)
                      .++++|+.++++..+...+....  ..++...+ .-++++.+...        ....+||..+    +............
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~--~~~~~~s~-~~~~~~~~~~~--------~~i~~~d~~~----g~~~~~~~~~~~~  166 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQ--PKSVRFID-NTRLAIPLLED--------EGMDVLDINS----GQTVRLSPPEKYK  166 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSC--BCCCEESS-SSEEEEEBTTS--------SSEEEEETTT----CCEEEECCCHHHH
T ss_pred             EEEEECCCCCcceEEEEEcCCCC--ceEEEEeC-CCeEEEEeCCC--------CeEEEEECCC----CeEeeecCccccc
Confidence            67888887664444332221111  11334444 34566665431        2357888776    3333211110000


Q ss_pred             cCC-CCCeEEE--CCEEEEEecCCCEEEEEECCCCcEE
Q 045071          262 SLE-SGRMVQV--NGKFYCMNYSPFSVLAYDISANAWF  296 (453)
Q Consensus       262 ~~~-~~~~v~~--~G~lY~~~~~~~~i~~yD~~~~~W~  296 (453)
                      ... .-..+.+  +|.+|+.......|..||+.+.+..
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~  204 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK  204 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence            000 0011222  6788877766578999999986543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=85.79  E-value=21  Score=32.68  Aligned_cols=180  Identities=9%  Similarity=-0.042  Sum_probs=91.3

Q ss_pred             eEEEEcCcccceecC-CCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcc-ccc-C-CC
Q 045071          182 TLILCNPVTGSLSQL-PPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLW-GTT-S-SL  257 (453)
Q Consensus       182 ~~~v~NP~T~~w~~L-P~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W-~~~-~-~~  257 (453)
                      .+.+.++.+++...+ +.+     ....++.++...-+||++....        .....++.+.... ..- +.+ . .+
T Consensus        11 ~I~~i~~~~~~~~~~~~~~-----~~p~g~~~d~~~~~ly~~D~~~--------~~I~~~~~~g~~~-~~~~~~~~~~~~   76 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLIPNL-----RNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHG-VSSYDTVISRDI   76 (316)
T ss_dssp             SEEEEETTSCCCEEEECSC-----SSEEEEEEETTTTEEEEEETTT--------TEEEEEEC---------CEEEECSSC
T ss_pred             eEEEEECCCcceEehhcCC-----CceEEEEEEeCCCEEEEEECCC--------CcEEEEECCCCCC-CcccEEEEeCCC
Confidence            567777777655433 222     2235777776556788875431        2334555443000 011 111 1 11


Q ss_pred             CCcccCCCCCeEE--ECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeEEEEEEEeccCCCCC
Q 045071          258 PRLCSLESGRMVQ--VNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLILVAAVEKSKLNVP  332 (453)
Q Consensus       258 p~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~vv~~~~~~~~~~~  332 (453)
                      .     .....++  .+|.+||.......|.++|++...-..+...   ....+ .++.  .+|.||+... ...     
T Consensus        77 ~-----~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~---~~~~P~~iavdp~~g~ly~~d~-~~~-----  142 (316)
T 1ijq_A           77 Q-----APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDW-GTP-----  142 (316)
T ss_dssp             S-----CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---TTCCEEEEEEETTTTEEEEEEC-SSS-----
T ss_pred             C-----CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC---CCCCcceEEeCCCCCEEEEEcc-CCC-----
Confidence            1     1122233  3689999987778999999987654433211   11222 3333  4688887652 110     


Q ss_pred             CcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceE
Q 045071          333 KSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQ  400 (453)
Q Consensus       333 ~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~  400 (453)
                        -.|++++.+...-+.+..-      .+.   ...++..-..++.||+.....++|.++|++...-+
T Consensus       143 --~~I~~~~~dG~~~~~~~~~------~~~---~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~  199 (316)
T 1ijq_A          143 --AKIKKGGLNGVDIYSLVTE------NIQ---WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  199 (316)
T ss_dssp             --CEEEEEETTSCCEEEEECS------SCS---CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             --CeEEEEcCCCCCeEEEEEC------CCC---CceEEEEeccCCEEEEEECCCCeEEEEecCCCceE
Confidence              1677776543322222111      000   00123222247899998877789999999765433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=85.65  E-value=26  Score=34.99  Aligned_cols=196  Identities=8%  Similarity=0.003  Sum_probs=95.6

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCccccee-cCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEc--
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGSLS-QLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHI--  242 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~w~-~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds--  242 (453)
                      +.+|.+++.+..  ...+.++|..|++.. .++. .    ....++.+.+++-.+++++.+         ..+.+||.  
T Consensus       146 ~p~~~~~vs~~~--d~~V~v~D~~t~~~~~~i~~-g----~~~~~v~~spdg~~l~v~~~d---------~~V~v~D~~~  209 (543)
T 1nir_A          146 DLPNLFSVTLRD--AGQIALVDGDSKKIVKVIDT-G----YAVHISRMSASGRYLLVIGRD---------ARIDMIDLWA  209 (543)
T ss_dssp             CGGGEEEEEEGG--GTEEEEEETTTCCEEEEEEC-S----TTEEEEEECTTSCEEEEEETT---------SEEEEEETTS
T ss_pred             CCCCEEEEEEcC--CCeEEEEECCCceEEEEEec-C----cccceEEECCCCCEEEEECCC---------CeEEEEECcC
Confidence            346777766543  247888999887643 2221 1    112345566655566666542         24577877  


Q ss_pred             ccCCCCCcccccCCCCCcccCCCCCeEEE-----CC-EEEEEecCCCEEEEEECCCCcEEE-eecCCcc-----cc-C-C
Q 045071          243 DAGGFFSLWGTTSSLPRLCSLESGRMVQV-----NG-KFYCMNYSPFSVLAYDISANAWFN-IQAPMRR-----FL-R-S  308 (453)
Q Consensus       243 ~~~~~~~~W~~~~~~p~~~~~~~~~~v~~-----~G-~lY~~~~~~~~i~~yD~~~~~W~~-i~~p~~~-----~~-~-~  308 (453)
                      .+    ..  .+..++....  ....++.     +| .+|+..+....|.++|..+.+-.. +......     .. . .
T Consensus       210 ~t----~~--~~~~i~~g~~--p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          210 KE----PT--KVAEIKIGIE--ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             SS----CE--EEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             CC----Cc--EEEEEecCCC--cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence            44    22  1111111000  0112332     45 577776655789999998865433 3221100     00 0 1


Q ss_pred             -Cceee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC
Q 045071          309 -PSLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS  386 (453)
Q Consensus       309 -~~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~  386 (453)
                       ..++. -+++.+++.....      ..+.+|.+..  .+-.++..++..        .....+.....|.++|+.....
T Consensus       282 v~~i~~s~~~~~~~vs~~~~------g~i~vvd~~~--~~~l~~~~i~~~--------~~~~~~~~spdg~~l~va~~~~  345 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKET------GKVLLVNYKD--IDNLTVTSIGAA--------PFLHDGGWDSSHRYFMTAANNS  345 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTT------TEEEEEECTT--SSSCEEEEEECC--------SSCCCEEECTTSCEEEEEEGGG
T ss_pred             eEEEEECCCCCEEEEEECCC------CeEEEEEecC--CCcceeEEeccC--------cCccCceECCCCCEEEEEecCC
Confidence             12333 2355555554221      2344454433  222223333210        0011233334567787776667


Q ss_pred             CeEEEEECCCCceEE
Q 045071          387 DKALLFDLCMKSWQW  401 (453)
Q Consensus       387 ~~v~~Yd~~~~~W~~  401 (453)
                      +.+.++|..+++...
T Consensus       346 ~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          346 NKVAVIDSKDRRLSA  360 (543)
T ss_dssp             TEEEEEETTTTEEEE
T ss_pred             CeEEEEECCCCeEEE
Confidence            889999999887544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=85.63  E-value=16  Score=33.44  Aligned_cols=117  Identities=11%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             CCEEEEEecCCCEEEEEECCCC--cEEEeecCC-----ccccCCC-ceeee--CCeEEEEEEEeccCCCCCCcEEEEEee
Q 045071          272 NGKFYCMNYSPFSVLAYDISAN--AWFNIQAPM-----RRFLRSP-SLLDS--NGKLILVAAVEKSKLNVPKSLRLWSLQ  341 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~--~W~~i~~p~-----~~~~~~~-~lv~~--~g~L~vv~~~~~~~~~~~~~i~vw~ld  341 (453)
                      +|.+|+.......|..||+...  .-..+..+.     ......+ .++..  +|+||+......      .  .|++++
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~------~--~I~~~~  172 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN------S--RIVQFS  172 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC------C--EEEEEC
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC------C--eEEEEc
Confidence            5889988776678999999765  233332211     1112223 23332  689998663111      1  555556


Q ss_pred             cCCCCeEE-EeecCHHH---HHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceE
Q 045071          342 ACGTLWAE-IERMPQQL---YAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQ  400 (453)
Q Consensus       342 ~~~~~W~~-v~~mp~~~---~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~  400 (453)
                      .. +.... +..-...-   ...+.   ....+.....++.||+......+|.+||.++.+..
T Consensus       173 ~~-g~~~~~~~~~g~~~~~~~~~~~---~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~  231 (329)
T 3fvz_A          173 PS-GKFVTQWGEESSGSSPRPGQFS---VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV  231 (329)
T ss_dssp             TT-SCEEEEECEECCSSSCCTTEES---CEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CC-CCEEEEeccCCCCCCCCCcccC---CCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            43 33322 22111000   00000   00112222234899999877889999999866543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=85.34  E-value=35  Score=34.86  Aligned_cols=185  Identities=10%  Similarity=0.012  Sum_probs=99.9

Q ss_pred             eecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEccc
Q 045071          165 SSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDA  244 (453)
Q Consensus       165 ~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~  244 (453)
                      ...+|.||+....  ...+..+++-......+-....   ..-.|+++|...-++|++...        ...+++++.+.
T Consensus        45 d~~~~~lywtD~~--~~~I~r~~~~g~~~~~v~~~g~---~~P~GlAvD~~~~~LY~tD~~--------~~~I~v~~~dG  111 (628)
T 4a0p_A           45 DVTDNRIYWTDIS--LKTISRAFMNGSALEHVVEFGL---DYPEGMAVDWLGKNLYWADTG--------TNRIEVSKLDG  111 (628)
T ss_dssp             ETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSC---SCCCEEEEETTTTEEEEEETT--------TTEEEEEETTS
T ss_pred             ECCCCEEEEEECC--CCeEEEEECCCCCcEEEEeCCC---CCcceEEEEeCCCEEEEEECC--------CCEEEEEecCC
Confidence            3457888877543  3467788876544333221111   111267776555578887542        13457777654


Q ss_pred             CCCCCcccc-c--CCCCCcccCCCCCeEEE--CCEEEEEecC-CCEEEEEECCCCcEEEeecCCccccCCC-ceee--eC
Q 045071          245 GGFFSLWGT-T--SSLPRLCSLESGRMVQV--NGKFYCMNYS-PFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SN  315 (453)
Q Consensus       245 ~~~~~~W~~-~--~~~p~~~~~~~~~~v~~--~G~lY~~~~~-~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~  315 (453)
                          . .+. +  ..+..     ....++-  +|.|||.... ...|..++++...-+.+-.    ....+ .|+.  .+
T Consensus       112 ----~-~~~~l~~~~l~~-----P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~----~~~~P~GlalD~~~  177 (628)
T 4a0p_A          112 ----Q-HRQVLVWKDLDS-----PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP----NVGRANGLTIDYAK  177 (628)
T ss_dssp             ----T-TCEEEECSSCCC-----EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC----SCSSEEEEEEETTT
T ss_pred             ----C-cEEEEEeCCCCC-----cccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC----CCCCcceEEEcccc
Confidence                2 221 1  11111     0223333  6999998743 4689999998776555421    12223 2332  25


Q ss_pred             CeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECC
Q 045071          316 GKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLC  395 (453)
Q Consensus       316 g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~  395 (453)
                      ++||++..  ..     .  .|+.++.+...=+.+...            ...++.....++.||+.....+.|...|..
T Consensus       178 ~~LY~aD~--~~-----~--~I~~~d~dG~~~~v~~~~------------l~~P~glav~~~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          178 RRLYWTDL--DT-----N--LIESSNMLGLNREVIADD------------LPHPFGLTQYQDYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             TEEEEEET--TT-----T--EEEEEETTSCSCEEEEEC------------CSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEC--CC-----C--EEEEEcCCCCceEEeecc------------CCCceEEEEECCEEEEecCCCCEEEEEECC
Confidence            89998663  21     1  566666542211222211            112444444678999988767888888876


Q ss_pred             CC
Q 045071          396 MK  397 (453)
Q Consensus       396 ~~  397 (453)
                      +.
T Consensus       237 tg  238 (628)
T 4a0p_A          237 SG  238 (628)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=85.30  E-value=22  Score=32.51  Aligned_cols=139  Identities=12%  Similarity=0.169  Sum_probs=61.0

Q ss_pred             eeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCc
Q 045071          181 KTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRL  260 (453)
Q Consensus       181 ~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~  260 (453)
                      ..+.+||..++++..+..+... .....++...++.-.++..+.+         -...+|+..+    +.+.....+...
T Consensus        30 ~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~----~~~~~~~~~~~~   95 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD---------RNAYVWTLKG----RTWKPTLVILRI   95 (372)
T ss_dssp             SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT---------SCEEEEEEET----TEEEEEEECCCC
T ss_pred             CEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC---------CeEEEEECCC----CeeeeeEEeecC
Confidence            3677888877754333222211 1123344444443344443332         2457788777    555433211110


Q ss_pred             ccCCCCCeEEE-CCEEEEEecCCCEEEEEECCCCc-EEEeecCCccccCCCceee--eCCeEEEEEEEeccCCCCCCcEE
Q 045071          261 CSLESGRMVQV-NGKFYCMNYSPFSVLAYDISANA-WFNIQAPMRRFLRSPSLLD--SNGKLILVAAVEKSKLNVPKSLR  336 (453)
Q Consensus       261 ~~~~~~~~v~~-~G~lY~~~~~~~~i~~yD~~~~~-W~~i~~p~~~~~~~~~lv~--~~g~L~vv~~~~~~~~~~~~~i~  336 (453)
                      .. .-....+. +|...+.+.....+..||+.+.+ |...............-+.  -++++++++...       ..+.
T Consensus        96 ~~-~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~  167 (372)
T 1k8k_C           96 NR-AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-------FKCR  167 (372)
T ss_dssp             SS-CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------SCEE
T ss_pred             CC-ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-------CCEE
Confidence            00 00111221 34444444444568888887654 3322111111111111122  256766665422       2578


Q ss_pred             EEEee
Q 045071          337 LWSLQ  341 (453)
Q Consensus       337 vw~ld  341 (453)
                      +|.+.
T Consensus       168 ~~d~~  172 (372)
T 1k8k_C          168 IFSAY  172 (372)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            89864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=85.28  E-value=12  Score=33.93  Aligned_cols=106  Identities=17%  Similarity=0.162  Sum_probs=63.1

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCcee-eeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEE
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLL-DSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEI  350 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv-~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v  350 (453)
                      +|.+|+.......|..||++...-..+..+  .  .-..++ .-+|+||+......       ...|++++..+++.+.+
T Consensus        42 ~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~--~--~p~gia~~~dG~l~vad~~~~-------~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           42 DGTIFVTNHEVGEIVSITPDGNQQIHATVE--G--KVSGLAFTSNGDLVATGWNAD-------SIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCEEEEEECS--S--EEEEEEECTTSCEEEEEECTT-------SCEEEEEECTTSCEEEE
T ss_pred             CCCEEEEeCCCCeEEEECCCCceEEEEeCC--C--CceeEEEcCCCcEEEEeccCC-------cceEEEEcCCCCeEEEE
Confidence            688999986667899999987533222222  1  111233 34688887553211       23688888667777766


Q ss_pred             eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCC
Q 045071          351 ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMK  397 (453)
Q Consensus       351 ~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~  397 (453)
                      ..++..   .+.     .+ .+...++.+|+.....+.++++|..+.
T Consensus       111 ~~~~~~---~~~-----~g-~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          111 LTLPDA---IFL-----NG-ITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EECTTC---SCE-----EE-EEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             EeCCCc---ccc-----Cc-ccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            665431   000     01 122346678887655678999998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=85.09  E-value=20  Score=31.75  Aligned_cols=147  Identities=10%  Similarity=0.134  Sum_probs=75.4

Q ss_pred             ecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccC
Q 045071          166 SSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAG  245 (453)
Q Consensus       166 s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~  245 (453)
                      ..+|.+++....  ...+.++|+-.+....+....  ......++.++++. +++++...        .....+|+... 
T Consensus       129 ~~~g~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g-~l~v~~~~--------~~~i~~~~~~g-  194 (286)
T 1q7f_A          129 DNKGRIIVVECK--VMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQ-EIFISDNR--------AHCVKVFNYEG-  194 (286)
T ss_dssp             CTTSCEEEEETT--TTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSSS-EEEEEEGG--------GTEEEEEETTC-
T ss_pred             eCCCCEEEEECC--CCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCCC-CEEEEECC--------CCEEEEEcCCC-
Confidence            446767666432  247889998655444432211  11122356666544 46665432        13457777644 


Q ss_pred             CCCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecCCC-EEEEEECCCCcEEEeecCCccccCCC-cee-eeCCeEEE
Q 045071          246 GFFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYSPF-SVLAYDISANAWFNIQAPMRRFLRSP-SLL-DSNGKLIL  320 (453)
Q Consensus       246 ~~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~-~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv-~~~g~L~v  320 (453)
                         ..-..+.....   ......+.+  +|.+|+...... .|..||........+......  ..+ .++ .-+|+||+
T Consensus       195 ---~~~~~~~~~g~---~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~~~~i~~~~~g~l~v  266 (286)
T 1q7f_A          195 ---QYLRQIGGEGI---TNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKH--AQCFDVALMDDGSVVL  266 (286)
T ss_dssp             ---CEEEEESCTTT---SCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCC--SCEEEEEEETTTEEEE
T ss_pred             ---CEEEEEccCCc---cCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCC--CcceeEEECCCCcEEE
Confidence               32222211100   011112333  588888876554 899999876655555332211  111 232 34789887


Q ss_pred             EEEEeccCCCCCCcEEEEEeec
Q 045071          321 VAAVEKSKLNVPKSLRLWSLQA  342 (453)
Q Consensus       321 v~~~~~~~~~~~~~i~vw~ld~  342 (453)
                      ..  .+      ..+.||++..
T Consensus       267 s~--~~------~~v~v~~~~~  280 (286)
T 1q7f_A          267 AS--KD------YRLYIYRYVQ  280 (286)
T ss_dssp             EE--TT------TEEEEEECSC
T ss_pred             EC--CC------CeEEEEEccc
Confidence            63  22      3678898754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=84.65  E-value=38  Score=34.63  Aligned_cols=176  Identities=10%  Similarity=-0.006  Sum_probs=92.1

Q ss_pred             eEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcc
Q 045071          182 TLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLC  261 (453)
Q Consensus       182 ~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~  261 (453)
                      .+...+.-+.....+-+..  .....+++.++...-+||++....        .....++.+.    ...+.+....   
T Consensus        16 ~I~~i~l~~~~~~~~~~~~--~~~~~~~l~~d~~~~~lywtD~~~--------~~I~r~~~~g----~~~~~v~~~g---   78 (628)
T 4a0p_A           16 DIRRISLETNNNNVAIPLT--GVKEASALDFDVTDNRIYWTDISL--------KTISRAFMNG----SALEHVVEFG---   78 (628)
T ss_dssp             EEEEEESSCTTCEEECCCC--SCSCEEEEEEETTTTEEEEEETTT--------TEEEEEETTS----CSCEEEECSS---
T ss_pred             cEEEEECCCCCcceEEEcC--CCCceEEEEEECCCCEEEEEECCC--------CeEEEEECCC----CCcEEEEeCC---
Confidence            4556666554432222221  122345788877666888875421        2334455544    3333332111   


Q ss_pred             cCCCCCeEEE---CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCC-ceee--eCCeEEEEEEEeccCCCCCCcE
Q 045071          262 SLESGRMVQV---NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNGKLILVAAVEKSKLNVPKSL  335 (453)
Q Consensus       262 ~~~~~~~v~~---~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g~L~vv~~~~~~~~~~~~~i  335 (453)
                       .....++.+   +|.|||.......|.++|++...-+.+..   .....+ .|+.  .+|.||+... ...       -
T Consensus        79 -~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~iavdp~~G~lY~tD~-g~~-------~  146 (628)
T 4a0p_A           79 -LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW---KDLDSPRALALDPAEGFMYWTEW-GGK-------P  146 (628)
T ss_dssp             -CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC---SSCCCEEEEEEETTTTEEEEEEC-SSS-------C
T ss_pred             -CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe---CCCCCcccEEEccCCCeEEEeCC-CCC-------C
Confidence             111223333   68999998877899999998754333321   112223 3443  3689997542 111       1


Q ss_pred             EEEEeecCCCCeEEEe-ecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCC
Q 045071          336 RLWSLQACGTLWAEIE-RMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMK  397 (453)
Q Consensus       336 ~vw~ld~~~~~W~~v~-~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~  397 (453)
                      +|++.+.+...-+.+. .+..           ..++..-..+++||+.......|.++|+...
T Consensus       147 ~I~r~~~dG~~~~~l~~~~~~-----------P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          147 KIDRAAMDGSERTTLVPNVGR-----------ANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             EEEEEETTSCSCEEEECSCSS-----------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEeCCCCceEEEECCCCC-----------cceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            6777666444333322 1110           0122222346888888776778888888654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=84.52  E-value=21  Score=31.52  Aligned_cols=216  Identities=10%  Similarity=0.079  Sum_probs=105.6

Q ss_pred             eeeeCCCCCeEeccCCCCCCCC-eeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceE
Q 045071          140 YLFDPHELSWYRISFALVPSEF-SPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVD  218 (453)
Q Consensus       140 ~~fdp~~~~w~~l~l~~lp~~~-~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~yk  218 (453)
                      ..||+. +++..+.++...... .+....+|.+++....  ...++++|+. ++...+.... . .....++..+++. +
T Consensus        39 ~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~-g~~~~~~~~~-~-~~~~~~i~~~~~g-~  111 (299)
T 2z2n_A           39 SCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA--ANKIGRITKK-GIIKEYTLPN-P-DSAPYGITEGPNG-D  111 (299)
T ss_dssp             EEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT--TTEEEEECTT-SCEEEEECSS-T-TCCEEEEEECTTS-C
T ss_pred             EEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC--CCeEEEECCC-CcEEEEeCCC-c-CCCceeeEECCCC-C
Confidence            467777 666555433211122 2333456777766432  2368889986 4443332111 1 1122356666543 4


Q ss_pred             EEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecCCCEEEEEECCCCcEE
Q 045071          219 VTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYSPFSVLAYDISANAWF  296 (453)
Q Consensus       219 vv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~yD~~~~~W~  296 (453)
                      +++.....        ....+|+. +    +...... .+.  .......+..  +|.+|+.......|..||+ +++..
T Consensus       112 l~v~~~~~--------~~i~~~d~-~----g~~~~~~-~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A          112 IWFTEMNG--------NRIGRITD-D----GKIREYE-LPN--KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             EEEEETTT--------TEEEEECT-T----CCEEEEE-CSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             EEEEecCC--------ceEEEECC-C----CCEEEec-CCC--CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            55543211        12345555 3    3333221 110  0000112333  5788887765578999999 77776


Q ss_pred             EeecCCccccCCC-ceee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEE-E
Q 045071          297 NIQAPMRRFLRSP-SLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDT-I  373 (453)
Q Consensus       297 ~i~~p~~~~~~~~-~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~  373 (453)
                      .+..+..  ...+ .++. -+|+||+...  ..     .  .|+.++. ++....+ .++..         ......+ +
T Consensus       175 ~~~~~~~--~~~~~~i~~~~~g~l~v~~~--~~-----~--~i~~~~~-~g~~~~~-~~~~~---------~~~~~~i~~  232 (299)
T 2z2n_A          175 EFKIPTP--ASGPVGITKGNDDALWFVEI--IG-----N--KIGRITT-SGEITEF-KIPTP---------NARPHAITA  232 (299)
T ss_dssp             EEECSST--TCCEEEEEECTTSSEEEEET--TT-----T--EEEEECT-TCCEEEE-ECSST---------TCCEEEEEE
T ss_pred             EeeCCCC--CCcceeEEECCCCCEEEEcc--CC-----c--eEEEECC-CCcEEEE-ECCCC---------CCCceeEEE
Confidence            6533321  1222 2332 3688887542  11     1  5667777 5555543 22210         0112222 2


Q ss_pred             eeCCEEEEEEcCCCeEEEEECCCCceEEc
Q 045071          374 GHGEFIVIVIRGSDKALLFDLCMKSWQWI  402 (453)
Q Consensus       374 ~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l  402 (453)
                      ..++.||+.....+.+..||+ +++...+
T Consensus       233 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~  260 (299)
T 2z2n_A          233 GAGIDLWFTEWGANKIGRLTS-NNIIEEY  260 (299)
T ss_dssp             CSTTCEEEEETTTTEEEEEET-TTEEEEE
T ss_pred             CCCCCEEEeccCCceEEEECC-CCceEEE
Confidence            234568887655688999999 4554443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=83.43  E-value=23  Score=31.21  Aligned_cols=215  Identities=12%  Similarity=0.079  Sum_probs=104.6

Q ss_pred             eeeeCCCCCeEeccCCCCCCC-CeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceE
Q 045071          140 YLFDPHELSWYRISFALVPSE-FSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVD  218 (453)
Q Consensus       140 ~~fdp~~~~w~~l~l~~lp~~-~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~yk  218 (453)
                      ..||+. .+...+.++..... ..+....+|.+++....  ...++++|+. ++...+......  ....++..++.. +
T Consensus        44 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~v~~~d~~-g~~~~~~~~~~~--~~~~~i~~~~~g-~  116 (300)
T 2qc5_A           44 SSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG--ANKIGKLSKK-GGFTEYPLPQPD--SGPYGITEGLNG-D  116 (300)
T ss_dssp             EEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT--TTEEEEECTT-SCEEEEECSSTT--CCEEEEEECSTT-C
T ss_pred             EEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC--CCeEEEECCC-CCeEEecCCCCC--CCCccceECCCC-C
Confidence            467777 66655443311111 22333456777765432  2368899988 665543221111  122355555433 4


Q ss_pred             EEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE--CCEEEEEecCCCEEEEEECCCCcEE
Q 045071          219 VTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV--NGKFYCMNYSPFSVLAYDISANAWF  296 (453)
Q Consensus       219 vv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~yD~~~~~W~  296 (453)
                      +++.....        .....|+.+.     ...... ++.  .......+.+  +|.+|+.......|..||+ ++++.
T Consensus       117 l~v~~~~~--------~~i~~~~~~g-----~~~~~~-~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  179 (300)
T 2qc5_A          117 IWFTQLNG--------DRIGKLTADG-----TIYEYD-LPN--KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE  179 (300)
T ss_dssp             EEEEETTT--------TEEEEECTTS-----CEEEEE-CSS--TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             EEEEccCC--------CeEEEECCCC-----CEEEcc-CCC--CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence            55543211        1224444431     111111 111  0000112333  5788887765578999999 66666


Q ss_pred             EeecCCccccCCC-ceee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEE-EE
Q 045071          297 NIQAPMRRFLRSP-SLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFD-TI  373 (453)
Q Consensus       297 ~i~~p~~~~~~~~-~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~~  373 (453)
                      .+..+..  ...+ .++. -+|+||+...  ...       .|+.++. .+.+..+. ++..    .     ..... ++
T Consensus       180 ~~~~~~~--~~~~~~i~~d~~g~l~v~~~--~~~-------~i~~~~~-~g~~~~~~-~~~~----~-----~~~~~i~~  237 (300)
T 2qc5_A          180 EYPLPTN--AAAPVGITSGNDGALWFVEI--MGN-------KIGRITT-TGEISEYD-IPTP----N-----ARPHAITA  237 (300)
T ss_dssp             EEECSST--TCCEEEEEECTTSSEEEEET--TTT-------EEEEECT-TCCEEEEE-CSST----T-----CCEEEEEE
T ss_pred             EeeCCCC--CCCcceEEECCCCCEEEEcc--CCC-------EEEEEcC-CCcEEEEE-CCCC----C-----CCceEEEE
Confidence            5543321  1222 2332 3688887542  111       5677776 45555432 2310    0     11222 22


Q ss_pred             eeCCEEEEEEcCCCeEEEEECCCCceEE
Q 045071          374 GHGEFIVIVIRGSDKALLFDLCMKSWQW  401 (453)
Q Consensus       374 ~~g~~I~l~~~~~~~v~~Yd~~~~~W~~  401 (453)
                      ..++.||+.....+.+..||+. ++...
T Consensus       238 d~~g~l~v~~~~~~~i~~~~~~-g~~~~  264 (300)
T 2qc5_A          238 GKNSEIWFTEWGANQIGRITND-NTIQE  264 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCCCEEEeccCCCeEEEECCC-CcEEE
Confidence            2345688887656889999994 55543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=82.97  E-value=29  Score=31.94  Aligned_cols=186  Identities=15%  Similarity=0.110  Sum_probs=96.1

Q ss_pred             cCceEEEEecCCCCeeEEEEcCcccce---ecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcc
Q 045071          167 SGGLVCWVSDHAGAKTLILCNPVTGSL---SQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHID  243 (453)
Q Consensus       167 ~~Gll~~~~~~~~~~~~~v~NP~T~~w---~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~  243 (453)
                      ..|.||+....  ...+.++++-+...   .....+.     ...|+.++...-++|+....        ....++++.+
T Consensus        45 ~~~~lyw~D~~--~~~I~r~~~~g~~~~~~~~~~~l~-----~p~glavd~~~g~ly~~d~~--------~~~I~~~~~d  109 (318)
T 3sov_A           45 SHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLL-----SPDGLACDWLGEKLYWTDSE--------TNRIEVSNLD  109 (318)
T ss_dssp             GGTEEEEEETT--TTEEEEEETTSSSCCCEEEEECCS-----CCCEEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred             CCCEEEEEECC--CCcEEEEEccCCCceEEEEcCCCC-----CccEEEEEcCCCeEEEEECC--------CCEEEEEECC
Confidence            45777776533  34678888766521   1111111     11256666544567776432        1244677665


Q ss_pred             cCCCCCcccccCCCCCcccCCCCCeEEE---CCEEEEEecC-CCEEEEEECCCCcEEEeecCCccccCCC-ceee--eCC
Q 045071          244 AGGFFSLWGTTSSLPRLCSLESGRMVQV---NGKFYCMNYS-PFSVLAYDISANAWFNIQAPMRRFLRSP-SLLD--SNG  316 (453)
Q Consensus       244 ~~~~~~~W~~~~~~p~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv~--~~g  316 (453)
                      .    ..=+.+..-    .......+.+   +|.+||.... ...|..+|++...-+.+-..   ....+ .|+.  .++
T Consensus       110 G----~~~~~l~~~----~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---~l~~Pnglavd~~~~  178 (318)
T 3sov_A          110 G----SLRKVLFWQ----ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS---EIYWPNGLTLDYEEQ  178 (318)
T ss_dssp             S----CSCEEEECS----SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS---SCSCEEEEEEETTTT
T ss_pred             C----CcEEEEEeC----CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC---CCCCccEEEEeccCC
Confidence            4    211111110    0111122333   5899998743 46899999986543333111   11222 3433  378


Q ss_pred             eEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCC
Q 045071          317 KLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCM  396 (453)
Q Consensus       317 ~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~  396 (453)
                      +||++..  ..     .  .|+.++.+...-+.+..  .         ....++.....++.+|......+.|..+|..+
T Consensus       179 ~lY~aD~--~~-----~--~I~~~d~dG~~~~~~~~--~---------~~~~P~glav~~~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          179 KLYWADA--KL-----N--FIHKSNLDGTNRQAVVK--G---------SLPHPFALTLFEDILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             EEEEEET--TT-----T--EEEEEETTSCSCEEEEC--S---------CCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEC--CC-----C--EEEEEcCCCCceEEEec--C---------CCCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence            8998653  21     1  56666654332223321  0         01124444446889999877778999999965


Q ss_pred             Cc
Q 045071          397 KS  398 (453)
Q Consensus       397 ~~  398 (453)
                      .+
T Consensus       239 G~  240 (318)
T 3sov_A          239 GE  240 (318)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=82.37  E-value=11  Score=38.01  Aligned_cols=116  Identities=14%  Similarity=0.202  Sum_probs=65.1

Q ss_pred             CeEEECCEEEEEecCCCEEEEEEC-CCC--cEEEeecCCccc--------cCCCceeeeCCeEEEEEEEeccCCCCCCcE
Q 045071          267 RMVQVNGKFYCMNYSPFSVLAYDI-SAN--AWFNIQAPMRRF--------LRSPSLLDSNGKLILVAAVEKSKLNVPKSL  335 (453)
Q Consensus       267 ~~v~~~G~lY~~~~~~~~i~~yD~-~~~--~W~~i~~p~~~~--------~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i  335 (453)
                      .+++.+|++|+.+.....|.++|. +++  .|+.- .+....        .....++..+++||+...  +.        
T Consensus        57 ~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg--------  125 (571)
T 2ad6_A           57 APLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--NG--------  125 (571)
T ss_dssp             CCEEETTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--TS--------
T ss_pred             ccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEc-CCCCccccccccccccccccEEECCEEEEEeC--CC--------
Confidence            457889999998762367999999 765  58653 221110        011234556888886431  11        


Q ss_pred             EEEEeecC--CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCc--eEE
Q 045071          336 RLWSLQAC--GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKS--WQW  401 (453)
Q Consensus       336 ~vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~--W~~  401 (453)
                      .|+.+|..  ...|+.-  ++..- ... .. ....   +..++.||+....     .+.+.+||.++.+  |+.
T Consensus       126 ~l~alD~~tG~~~W~~~--~~~~~-~~~-~~-~~~P---~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          126 HLLALDAKTGKINWEVE--VCDPK-VGS-TL-TQAP---FVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEEEETTTCCEEEEEE--CCCGG-GTC-BC-CSCC---EEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCCEEEEec--CCCCC-ccc-ee-ccCC---EEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            67778864  3457642  22100 000 00 0011   1247888886542     4789999999875  543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=81.86  E-value=30  Score=31.37  Aligned_cols=28  Identities=11%  Similarity=-0.073  Sum_probs=21.7

Q ss_pred             eeCCEEEEEEcCCCeEEEEECCCCceEE
Q 045071          374 GHGEFIVIVIRGSDKALLFDLCMKSWQW  401 (453)
Q Consensus       374 ~~g~~I~l~~~~~~~v~~Yd~~~~~W~~  401 (453)
                      ..|+.+|+.....+.+.+||+.+.+...
T Consensus       240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          240 TARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             TTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            3578898887667899999998876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=81.70  E-value=11  Score=39.00  Aligned_cols=116  Identities=20%  Similarity=0.224  Sum_probs=64.7

Q ss_pred             CeEEECCEEEEEecCCCEEEEEECCCC--cEEEeecCCcc-c-------cCCCceeeeCCeEEEEEEEeccCCCCCCcEE
Q 045071          267 RMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNIQAPMRR-F-------LRSPSLLDSNGKLILVAAVEKSKLNVPKSLR  336 (453)
Q Consensus       267 ~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i~~p~~~-~-------~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~  336 (453)
                      ..++.+|++|+.+.. ..|.++|.+++  .|+.- ...+. .       .....++..+++||+...  +.        .
T Consensus        72 ~P~v~~g~vyv~~~~-~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--dg--------~  139 (677)
T 1kb0_A           72 TPVVVDGIMYVSASW-SVVHAIDTRTGNRIWTYD-PQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--DG--------R  139 (677)
T ss_dssp             CCEEETTEEEEECGG-GCEEEEETTTTEEEEEEC-CCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--TS--------E
T ss_pred             CCEEECCEEEEECCC-CeEEEEECCCCcEEEEEc-CCCCccccccccccCCCCCceEECCEEEEEcC--CC--------E
Confidence            457899999998764 57999999876  48653 22110 0       111234456788886421  11        5


Q ss_pred             EEEeecC--CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCc--eEE
Q 045071          337 LWSLQAC--GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKS--WQW  401 (453)
Q Consensus       337 vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~--W~~  401 (453)
                      |+.+|..  ...|+.-  +...    ......... ..+..++.||+....     .+.+.+||.++.+  |+.
T Consensus       140 l~alD~~tG~~~W~~~--~~~~----~~~~~~~~~-~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          140 LIALDAATGKEVWHQN--TFEG----QKGSLTITG-APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             EEEEETTTCCEEEEEE--TTTT----CCSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEEeeec--CCcC----cCcCccccc-CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            6777764  3357642  2200    000000000 112247888886432     4689999999876  554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=81.60  E-value=22  Score=34.00  Aligned_cols=112  Identities=8%  Similarity=0.059  Sum_probs=61.9

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCce-eeeCCe-EEEEEEEeccCCCCCCcEEEEEeecCCC-CeE
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSL-LDSNGK-LILVAAVEKSKLNVPKSLRLWSLQACGT-LWA  348 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~l-v~~~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~~~-~W~  348 (453)
                      +|.||+.......|..||+.+++-..+.....    .+.+ +.-+|+ ||+... ..       ...||.++.... ...
T Consensus       141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~----~~~ia~~~~g~~l~~~d~-~~-------~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK----GGKPAVTKDKQRVYSIGW-EG-------THTVYVYMKASGWAPT  208 (409)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEEETCC----BCBCEECTTSSEEEEEBS-ST-------TCEEEEEEGGGTTCEE
T ss_pred             CCCEEEEecCCCcEEEEECCCCEEEEeeccCC----CCceeEecCCCcEEEEec-CC-------CceEEEEEcCCCceeE
Confidence            68999998766799999999887766533211    1122 223444 554332 11       116788776422 222


Q ss_pred             EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEEc
Q 045071          349 EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWI  402 (453)
Q Consensus       349 ~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l  402 (453)
                      .+..++...   .   .....+.+...++.||+. ...+.+..||++++....+
T Consensus       209 ~~g~~~~~~---~---~~p~~iav~p~~g~lyv~-d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          209 RIGQLGSTF---S---GKIGAVALDETEEWLYFV-DSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             EEEECCTTS---C---SCCCBCEECTTSSEEEEE-CTTCEEEEEETTTCCEEEE
T ss_pred             Eeeeccchh---c---CCcEEEEEeCCCCeEEEE-ECCCcEEEEECCCCCEEEE
Confidence            332222100   0   011223333336789985 3367899999998876554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=81.35  E-value=24  Score=33.65  Aligned_cols=116  Identities=9%  Similarity=0.055  Sum_probs=63.7

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEeecCC---------cccc-CCCceee---eCCeEEEEEEEeccCCCCCCcEEEE
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPM---------RRFL-RSPSLLD---SNGKLILVAAVEKSKLNVPKSLRLW  338 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~---------~~~~-~~~~lv~---~~g~L~vv~~~~~~~~~~~~~i~vw  338 (453)
                      +|+++|++.. ..+.++|..++.-..+ .+.         +... .....+.   -+++||+........-+....=+||
T Consensus       237 dG~~~~vs~~-g~V~v~d~~~~~~~v~-~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~  314 (386)
T 3sjl_D          237 AGRLVWPTYT-GKIHQIDLSSGDAKFL-PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  314 (386)
T ss_dssp             TTEEEEEBTT-SEEEEEECTTSSCEEC-CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCcEEEEeCC-CEEEEEECCCCcceee-cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence            7888888775 6899999987642221 110         0000 1112222   3688888764321100011123899


Q ss_pred             EeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCC-EEEEEEcCCCeEEEEECCCCce
Q 045071          339 SLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGE-FIVIVIRGSDKALLFDLCMKSW  399 (453)
Q Consensus       339 ~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~-~I~l~~~~~~~v~~Yd~~~~~W  399 (453)
                      ++|..  .++.+.+++..      .  ....+.....+. ++|..+...+.+.+||..+.+.
T Consensus       315 viD~~--t~kv~~~i~vg------~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          315 VLDAK--TGERLAKFEMG------H--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEETT--TCCEEEEEEEE------E--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEECC--CCeEEEEEECC------C--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence            99964  44445555431      0  001233333443 7888777688999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	453
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	8e-08
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	9e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	3e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (110), Expect = 8e-08
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 51 WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSF 90
          W  LP  LL  + + L  P   +   VCKRWY L    S 
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 9e-05
 Identities = 7/77 (9%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 51  WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQK 110
            + LP  +  ++  +L       +  V + W  ++  ++   L+  +    ++       
Sbjct: 6   ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST--SLWKKLLISENFVSPKGFN 63

Query: 111 TPLIKTTSYIYTTNNNS 127
           +  +K +      +   
Sbjct: 64  SLNLKLSQKYPKLSQQD 80

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 50  IWSKLPQRLLD----RVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHW 103
             + LP R LD     +L++L   +   A  VCK WY +        L+  +  R   
Sbjct: 10  FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGM---LWKKLIERMVR 64

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 51  WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQK 110
            S LP+ L   VL+FL P    +A   C+ W  L   N    L+             + K
Sbjct: 19  ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNL---LWREKCKEEGIDEPLHIK 75

Query: 111 TP 112
             
Sbjct: 76  RR 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	453
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.78
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.58
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.49
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.16
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.42
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.31
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	88.08
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	87.9
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	87.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	87.11
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.6
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	85.45
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	82.76
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	81.61
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	81.02

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-17  Score=154.79  Aligned_cols=245  Identities=16%  Similarity=0.165  Sum_probs=174.7

Q ss_pred             cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCC-------CCeeEEEEcCcccceecCCCCCCCCCcceEEE
Q 045071          138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA-------GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGL  210 (453)
Q Consensus       138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~-------~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~  210 (453)
                      ....||+.+++|.+++....|+..+.+++.+|.+++.++..       ....++++||.+++|..+++++.+|..+...+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~   99 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV   99 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc
Confidence            34689999999999873334565455555677777766421       13478999999999999999999888765433


Q ss_pred             EEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEE
Q 045071          211 KVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSV  285 (453)
Q Consensus       211 ~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i  285 (453)
                      . +   .|++++++.....   .....+.|+..+    +.|.....++..  ......+.+++++|++++.     ...+
T Consensus       100 ~-~---~~i~~~gg~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~--r~~~~~~~~~~~~~~~GG~~~~~~~~~~  166 (288)
T d1zgka1         100 I-D---GHIYAVGGSHGCI---HHNSVERYEPER----DEWHLVAPMLTR--RIGVGVAVLNRLLYAVGGFDGTNRLNSA  166 (288)
T ss_dssp             E-T---TEEEEECCEETTE---ECCCEEEEETTT----TEEEECCCCSSC--CBSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred             c-c---eeeEEecceeccc---ccceeeeecccc----Cccccccccccc--cccceeeeeeecceEecCcccccccceE
Confidence            3 3   3888887643221   245678999999    999988776642  2335567889999988643     2568


Q ss_pred             EEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhccc
Q 045071          286 LAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIE  365 (453)
Q Consensus       286 ~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~  365 (453)
                      ..||+.+++|.....+ +........+..+++|+++++.....    ..-..|.++...++|+.+..+|..         
T Consensus       167 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~GG~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~---------  232 (288)
T d1zgka1         167 ECYYPERNEWRMITAM-NTIRSGAGVCVLHNCIYAAGGYDGQD----QLNSVERYDVETETWTFVAPMKHR---------  232 (288)
T ss_dssp             EEEETTTTEEEECCCC-SSCCBSCEEEEETTEEEEECCBCSSS----BCCCEEEEETTTTEEEECCCCSSC---------
T ss_pred             EEeecccccccccccc-ccccccccccceeeeEEEecCccccc----cccceeeeeecceeeecccCccCc---------
Confidence            9999999999877433 22334456677899999998754321    123567788888999998877652         


Q ss_pred             CCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcCCCCCcCC
Q 045071          366 AGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       366 ~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~~~p~~~~  410 (453)
                       +....++..++.||+.+..     ...+.+||+++++|+.++.+|..+.
T Consensus       233 -r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~  281 (288)
T d1zgka1         233 -RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRS  281 (288)
T ss_dssp             -CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB
T ss_pred             -ccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcE
Confidence             2233455568999997542     4678999999999999998887653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.7e-14  Score=129.33  Aligned_cols=217  Identities=14%  Similarity=0.110  Sum_probs=150.6

Q ss_pred             ceEEEEecCC--CCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCc-ccccccceeEEEcccC
Q 045071          169 GLVCWVSDHA--GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISP-YAVKNLSSESFHIDAG  245 (453)
Q Consensus       169 Gll~~~~~~~--~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~-~~~~~~~~evyds~~~  245 (453)
                      ..|++.++..  ....+.+|||.|++|..+++++.+|..+.+... +   .+++++|+..... .......+++||..+ 
T Consensus         5 ~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~~~~yd~~~-   79 (288)
T d1zgka1           5 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G---GLLYAVGGRNNSPDGNTDSSALDCYNPMT-   79 (288)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T---TEEEEECCEEEETTEEEECCCEEEEETTT-
T ss_pred             CEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEE-C---CEEEEEeCcccCCCCccccchhhhccccc-
Confidence            3455554422  234688999999999999999998877654333 2   3899998742111 111245678999999 


Q ss_pred             CCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEE
Q 045071          246 GFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLIL  320 (453)
Q Consensus       246 ~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~v  320 (453)
                         ++|+.++++|..+  ....++.++|++|+++..     ......||+.++.|..... .+..+..+.++..++++++
T Consensus        80 ---~~w~~~~~~p~~r--~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~  153 (288)
T d1zgka1          80 ---NQWSPCAPMSVPR--NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP-MLTRRIGVGVAVLNRLLYA  153 (288)
T ss_dssp             ---TEEEECCCCSSCC--BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEE
T ss_pred             ---cccccccccccee--cceeccccceeeEEecceecccccceeeeeccccCccccccc-cccccccceeeeeeecceE
Confidence               9999999888633  335578889999998542     2467899999999987633 3334455667788999999


Q ss_pred             EEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECC
Q 045071          321 VAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLC  395 (453)
Q Consensus       321 v~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~  395 (453)
                      +|+.....    ....++.++...++|.+...++..          .........++.|++....     ......||+.
T Consensus       154 ~GG~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~  219 (288)
T d1zgka1         154 VGGFDGTN----RLNSAECYYPERNEWRMITAMNTI----------RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE  219 (288)
T ss_dssp             ECCBCSSC----BCCCEEEEETTTTEEEECCCCSSC----------CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             ecCccccc----ccceEEEeeccccccccccccccc----------cccccccceeeeEEEecCccccccccceeeeeec
Confidence            98754321    122567788888899887665541          1123344567888887532     4678999999


Q ss_pred             CCceEEcCCCCCcCC
Q 045071          396 MKSWQWIPRCPYVQA  410 (453)
Q Consensus       396 ~~~W~~l~~~p~~~~  410 (453)
                      +++|..++..|..+.
T Consensus       220 ~~~~~~~~~~p~~r~  234 (288)
T d1zgka1         220 TETWTFVAPMKHRRS  234 (288)
T ss_dssp             TTEEEECCCCSSCCB
T ss_pred             ceeeecccCccCccc
Confidence            999999987776543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.49  E-value=5.2e-14  Score=135.76  Aligned_cols=252  Identities=10%  Similarity=0.017  Sum_probs=155.4

Q ss_pred             ceeeeCCCCCeEeccCCCCCCCC---eeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCC
Q 045071          139 GYLFDPHELSWYRISFALVPSEF---SPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPT  215 (453)
Q Consensus       139 ~~~fdp~~~~w~~l~l~~lp~~~---~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~  215 (453)
                      ...|||.+++|..++....++..   ..+...+|.+++.++.. .+.+.+|||.+++|..+|.|+.+|..+.+++..+  
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d--  130 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND-AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--  130 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS-TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC-CcceeEecCccCcccccccccccccccceeeecC--
Confidence            35799999999877644444432   23344678888776543 3468899999999999999999988775544433  


Q ss_pred             ceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCC---------CCCe-EE--ECCEEEEEecCCC
Q 045071          216 AVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLE---------SGRM-VQ--VNGKFYCMNYSPF  283 (453)
Q Consensus       216 ~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~---------~~~~-v~--~~G~lY~~~~~~~  283 (453)
                       -+|+++|+.....  ......++||+.+    ++|+.+..+.......         .... ++  .+|++|..+....
T Consensus       131 -G~v~v~GG~~~~~--~~~~~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~  203 (387)
T d1k3ia3         131 -GRVFTIGGSWSGG--VFEKNGEVYSPSS----KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTA  203 (387)
T ss_dssp             -SCEEEECCCCCSS--SCCCCEEEEETTT----TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSE
T ss_pred             -Cceeeeccccccc--cccceeeeecCCC----CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCC
Confidence             3788887742211  1245679999999    9999876543211100         0111 22  2577887766656


Q ss_pred             EEEEEECCCCcEEEeec-CCcc-----ccCC--CceeeeCCeEEEEEEEeccC-CCCCCcEEEEEeec---CCCCeEEEe
Q 045071          284 SVLAYDISANAWFNIQA-PMRR-----FLRS--PSLLDSNGKLILVAAVEKSK-LNVPKSLRLWSLQA---CGTLWAEIE  351 (453)
Q Consensus       284 ~i~~yD~~~~~W~~i~~-p~~~-----~~~~--~~lv~~~g~L~vv~~~~~~~-~~~~~~i~vw~ld~---~~~~W~~v~  351 (453)
                      .+..||+.+..|..... +.+.     ....  ..+...+|+++++|+..... ........+..+..   ....|.++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (387)
T d1k3ia3         204 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN  283 (387)
T ss_dssp             EEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT
T ss_pred             cEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc
Confidence            78999999999977632 1111     0111  11233589999999854321 11122333443332   234566666


Q ss_pred             ecCHHHHHHhhcccCCCcE-EEEeeCCEEEEEEcC-----------CCeEEEEECCCCceEEcCCCCCcCC
Q 045071          352 RMPQQLYAQFAEIEAGNGF-DTIGHGEFIVIVIRG-----------SDKALLFDLCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       352 ~mp~~~~~~~~~~~~~~~~-~~~~~g~~I~l~~~~-----------~~~v~~Yd~~~~~W~~l~~~p~~~~  410 (453)
                      .||..          +... .++-.++.||+.+..           ...+.+||+++++|+.++.++..+.
T Consensus       284 ~~p~~----------r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~  344 (387)
T d1k3ia3         284 GLYFA----------RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV  344 (387)
T ss_dssp             CCSSC----------CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred             ccccc----------cccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCccc
Confidence            67652          1111 222235678887541           1257899999999999998887653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.16  E-value=8.7e-11  Score=112.62  Aligned_cols=242  Identities=12%  Similarity=0.099  Sum_probs=143.2

Q ss_pred             CCCCCeEecc-CCCCCCCCeeeeecCceEEEEecCCC---------CeeEEEEcCcccceecCCCCCCCCCcceEEEEEc
Q 045071          144 PHELSWYRIS-FALVPSEFSPASSSGGLVCWVSDHAG---------AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVT  213 (453)
Q Consensus       144 p~~~~w~~l~-l~~lp~~~~~~~s~~Gll~~~~~~~~---------~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~  213 (453)
                      |..++|.... +|..+. ...+...+|.|++.++...         .....+|||.|++|..+++++.++...+.+....
T Consensus         6 p~~g~W~~~~~~p~~~~-~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~   84 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIVPA-AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD   84 (387)
T ss_dssp             TTSCEEEEEEECSSCCS-EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC
T ss_pred             CCCCccCCcCCCCcccc-EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEe
Confidence            5677887654 554332 3345566888888765311         1246799999999999988877665444444443


Q ss_pred             CCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEE-ECCEEEEEecC------CCEEE
Q 045071          214 PTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQ-VNGKFYCMNYS------PFSVL  286 (453)
Q Consensus       214 ~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~-~~G~lY~~~~~------~~~i~  286 (453)
                      .+ -+|+++|+...       ..+++||+.+    +.|+....|+..+..  +.++. .+|++|++++.      ...+.
T Consensus        85 ~~-g~i~v~Gg~~~-------~~~~~yd~~~----~~w~~~~~~~~~r~~--~~~~~~~dG~v~v~GG~~~~~~~~~~v~  150 (387)
T d1k3ia3          85 GN-GQIVVTGGNDA-------KKTSLYDSSS----DSWIPGPDMQVARGY--QSSATMSDGRVFTIGGSWSGGVFEKNGE  150 (387)
T ss_dssp             TT-SCEEEECSSST-------TCEEEEEGGG----TEEEECCCCSSCCSS--CEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred             cC-CcEEEeecCCC-------cceeEecCcc----Ccccccccccccccc--cceeeecCCceeeeccccccccccceee
Confidence            32 37888887532       3569999999    999999888763332  23343 47899998653      24689


Q ss_pred             EEECCCCcEEEeecCC-ccc--cCC---------Cce-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeec
Q 045071          287 AYDISANAWFNIQAPM-RRF--LRS---------PSL-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERM  353 (453)
Q Consensus       287 ~yD~~~~~W~~i~~p~-~~~--~~~---------~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~m  353 (453)
                      .||+.+++|+.++... +..  ...         ..+ +..+|++++.++.         .-.+|.++.....|+....+
T Consensus       151 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~  221 (387)
T d1k3ia3         151 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS---------TAMNWYYTSGSGDVKSAGKR  221 (387)
T ss_dssp             EEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS---------SEEEEEECSTTCEEEEEEEC
T ss_pred             eecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc---------CCcEEecCcccCcEeecccc
Confidence            9999999999874311 110  000         111 1234666654431         23778888888899888776


Q ss_pred             CHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--------CCeEEEEE-----CCCCceEEcCCCCCcCC
Q 045071          354 PQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--------SDKALLFD-----LCMKSWQWIPRCPYVQA  410 (453)
Q Consensus       354 p~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--------~~~v~~Yd-----~~~~~W~~l~~~p~~~~  410 (453)
                      +..... ...............++.|++....        ......++     .....|..++.+|..+.
T Consensus       222 ~~~~~~-~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~  290 (387)
T d1k3ia3         222 QSNRGV-APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART  290 (387)
T ss_dssp             EETTEE-CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred             ccCccc-CcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccc
Confidence            542100 0000111122223346778776542        12233333     33346777777776654

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.5e-12  Score=79.15  Aligned_cols=40  Identities=38%  Similarity=0.823  Sum_probs=37.5

Q ss_pred             cCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccc
Q 045071           51 WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSF   90 (453)
Q Consensus        51 w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F   90 (453)
                      |..||+|++.+||++||.++|++++.|||+|+.++.++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            7899999999999999999999999999999999987654

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4e-08  Score=75.04  Aligned_cols=48  Identities=29%  Similarity=0.412  Sum_probs=43.1

Q ss_pred             ccccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchhhhh
Q 045071           48 SRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELYI   95 (453)
Q Consensus        48 ~~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~~~   95 (453)
                      ....+.||+||+.+||+.|+..+|+++++|||+|+.++.++.+.+...
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~   63 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            355688999999999999999999999999999999999998876554

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=4.4e-08  Score=74.44  Aligned_cols=44  Identities=14%  Similarity=0.354  Sum_probs=38.4

Q ss_pred             cccCCChHHHHHHHHhcCChhhhhhhhhccccccccccC-ccchh
Q 045071           49 RIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFS-NSFLE   92 (453)
Q Consensus        49 ~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s-~~F~~   92 (453)
                      ..++.||+||+.+||+.|+..+|++++.|||+|+.++.+ +.+.+
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr   48 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWK   48 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHH
T ss_pred             CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            356789999999999999999999999999999999864 55544

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.7e-07  Score=70.85  Aligned_cols=46  Identities=22%  Similarity=0.540  Sum_probs=40.7

Q ss_pred             cccCCCh----HHHHHHHHhcCChhhhhhhhhccccccccccCccchhhh
Q 045071           49 RIWSKLP----QRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELY   94 (453)
Q Consensus        49 ~~w~~LP----~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~~   94 (453)
                      ...+.||    +||+.+||+.|+..+|+++++|||+|+.++.++.+.+..
T Consensus         9 D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~   58 (118)
T d1p22a1           9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL   58 (118)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred             cHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            4566777    599999999999999999999999999999998886654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.08  E-value=7.1  Score=33.37  Aligned_cols=202  Identities=9%  Similarity=-0.002  Sum_probs=97.6

Q ss_pred             eeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCC-CcceEEEEEcCCceE
Q 045071          140 YLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPR-LFPSIGLKVTPTAVD  218 (453)
Q Consensus       140 ~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r-~~~~~~~~~~~~~yk  218 (453)
                      ..+|+..++-..+.++..+. .......+++++. ..    ..++++||.+++...+....... ....-.+.+++.+. 
T Consensus        43 ~r~d~~~g~~~~~~~~~~~~-~i~~~~dg~l~va-~~----~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-  115 (295)
T d2ghsa1          43 HELHLASGRKTVHALPFMGS-ALAKISDSKQLIA-SD----DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-  115 (295)
T ss_dssp             EEEETTTTEEEEEECSSCEE-EEEEEETTEEEEE-ET----TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-
T ss_pred             EEEECCCCeEEEEECCCCcE-EEEEecCCCEEEE-Ee----CccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-
Confidence            45777776554444443332 1123344455543 32    36899999999988775543321 11112344555432 


Q ss_pred             EEEEccCCCCcccccccceeEEEcccCCCCCcccccC-CCCCcccCCCCCeEEE---CCEEEEEecCCCEEEEEECCCCc
Q 045071          219 VTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTS-SLPRLCSLESGRMVQV---NGKFYCMNYSPFSVLAYDISANA  294 (453)
Q Consensus       219 vv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~-~~p~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~yD~~~~~  294 (453)
                      +++...... .   ......+|....    +.-+.+. .+..      ...+.+   +..+|+.......|.+||...+.
T Consensus       116 iw~~~~~~~-~---~~~~g~l~~~~~----g~~~~~~~~~~~------~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~  181 (295)
T d2ghsa1         116 LWIGTMGRK-A---ETGAGSIYHVAK----GKVTKLFADISI------PNSICFSPDGTTGYFVDTKVNRLMRVPLDART  181 (295)
T ss_dssp             EEEEEEETT-C---CTTCEEEEEEET----TEEEEEEEEESS------EEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             EEEEecccc-c---cccceeEeeecC----CcEEEEeeccCC------cceeeecCCCceEEEeecccceeeEeeecccc
Confidence            333211100 0   011234565555    4433321 1110      112222   34588888777889999875321


Q ss_pred             -------EEEeecCCccccCCC-c-eeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhccc
Q 045071          295 -------WFNIQAPMRRFLRSP-S-LLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIE  365 (453)
Q Consensus       295 -------W~~i~~p~~~~~~~~-~-lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~  365 (453)
                             ...+..+..  ...+ . .+..+|.|++... ...        +|++++++.. -...-.+|.+.        
T Consensus       182 ~~~~~~~~~~~~~~~~--~g~pdG~~vD~~GnlWva~~-~~g--------~V~~~dp~G~-~~~~i~lP~~~--------  241 (295)
T d2ghsa1         182 GLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARW-GEG--------AVDRYDTDGN-HIARYEVPGKQ--------  241 (295)
T ss_dssp             CCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEE-TTT--------EEEEECTTCC-EEEEEECSCSB--------
T ss_pred             cccccceEEEeccCcc--cccccceEEcCCCCEEeeee-CCC--------ceEEecCCCc-EeeEecCCCCc--------
Confidence                   111211111  1111 2 2456899997543 221        7888898544 44444666410        


Q ss_pred             CCCcEEEEe--eCCEEEEEEc
Q 045071          366 AGNGFDTIG--HGEFIVIVIR  384 (453)
Q Consensus       366 ~~~~~~~~~--~g~~I~l~~~  384 (453)
                        ..-.|+|  ..+.+|++..
T Consensus       242 --~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         242 --TTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             --EEEEEEESTTSCEEEEEEB
T ss_pred             --eEEEEEeCCCCCEEEEEEC
Confidence              1122454  3467998753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.90  E-value=9.4  Score=34.53  Aligned_cols=196  Identities=11%  Similarity=0.025  Sum_probs=95.9

Q ss_pred             CceEEEEecCCCCeeEEEEcCcccceec-CCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCC
Q 045071          168 GGLVCWVSDHAGAKTLILCNPVTGSLSQ-LPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGG  246 (453)
Q Consensus       168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~-LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~  246 (453)
                      ..++++....  ...+.|+|+.|++... ++. .    ....++.+.+++-.+++++.+         -...+||..+  
T Consensus        31 ~~~~~v~~~d--~g~v~v~D~~t~~v~~~~~~-g----~~~~~v~fSpDG~~l~~~s~d---------g~v~~~d~~t--   92 (432)
T d1qksa2          31 ENLFSVTLRD--AGQIALIDGSTYEIKTVLDT-G----YAVHISRLSASGRYLFVIGRD---------GKVNMIDLWM--   92 (432)
T ss_dssp             GGEEEEEETT--TTEEEEEETTTCCEEEEEEC-S----SCEEEEEECTTSCEEEEEETT---------SEEEEEETTS--
T ss_pred             CcEEEEEEcC--CCEEEEEECCCCcEEEEEeC-C----CCeeEEEECCCCCEEEEEcCC---------CCEEEEEeeC--
Confidence            3455554433  3478999999987543 322 1    112355666655556665432         2447788777  


Q ss_pred             CCCcccccCCCCCcccCCCCCeEE-----ECCE-EEEEecCCCEEEEEECCCCcEEEeec-CCcc-----ccCCC---ce
Q 045071          247 FFSLWGTTSSLPRLCSLESGRMVQ-----VNGK-FYCMNYSPFSVLAYDISANAWFNIQA-PMRR-----FLRSP---SL  311 (453)
Q Consensus       247 ~~~~W~~~~~~p~~~~~~~~~~v~-----~~G~-lY~~~~~~~~i~~yD~~~~~W~~i~~-p~~~-----~~~~~---~l  311 (453)
                        ..-.....++.....  ...++     -+|+ +|+.......+..+|.++.+-..... ....     .....   .+
T Consensus        93 --~~~~~~~~i~~~~~~--~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (432)
T d1qksa2          93 --KEPTTVAEIKIGSEA--RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  168 (432)
T ss_dssp             --SSCCEEEEEECCSEE--EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             --CCceEEEEEecCCCC--CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEE
Confidence              333222222110000  01111     1464 67766666789999999987654321 1100     00011   12


Q ss_pred             e-eeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEE
Q 045071          312 L-DSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKAL  390 (453)
Q Consensus       312 v-~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~  390 (453)
                      + .-+|+.+++.....      .  .||.++..+.+-.++..++..        .....+.....|.++++.....+.+.
T Consensus       169 ~~s~dg~~~~vs~~~~------~--~i~~~d~~~~~~~~~~~i~~g--------~~~~~~~~spdg~~~~va~~~~~~v~  232 (432)
T d1qksa2         169 LASHYRPEFIVNVKET------G--KILLVDYTDLNNLKTTEISAE--------RFLHDGGLDGSHRYFITAANARNKLV  232 (432)
T ss_dssp             EECSSSSEEEEEETTT------T--EEEEEETTCSSEEEEEEEECC--------SSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             EECCCCCEEEEEEccC------C--eEEEEEccCCCcceEEEEccc--------CccccceECCCCCEEEEeccccceEE
Confidence            2 23455555554221      2  455555433333344444320        00012223334666777666667788


Q ss_pred             EEECCCCceEE
Q 045071          391 LFDLCMKSWQW  401 (453)
Q Consensus       391 ~Yd~~~~~W~~  401 (453)
                      +.|..+.+...
T Consensus       233 v~d~~~~~~~~  243 (432)
T d1qksa2         233 VIDTKEGKLVA  243 (432)
T ss_dssp             EEETTTTEEEE
T ss_pred             EeecccceEEE
Confidence            88887766543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.31  E-value=5.3  Score=34.62  Aligned_cols=117  Identities=14%  Similarity=0.170  Sum_probs=59.6

Q ss_pred             ECCEEEEEecC------CCEEEEEECCCCcEEEeecCCccccCCC-cee-eeCC-eEEEEEEEeccCCCCCCcEEEEEee
Q 045071          271 VNGKFYCMNYS------PFSVLAYDISANAWFNIQAPMRRFLRSP-SLL-DSNG-KLILVAAVEKSKLNVPKSLRLWSLQ  341 (453)
Q Consensus       271 ~~G~lY~~~~~------~~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv-~~~g-~L~vv~~~~~~~~~~~~~i~vw~ld  341 (453)
                      -+|.+|+....      ...+..+|++....+.+..+..    .+ .++ .-+| .||++... .      .  +||+++
T Consensus       139 ~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~----~pnGia~s~dg~~lyvad~~-~------~--~I~~~d  205 (319)
T d2dg1a1         139 SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS----VANGIALSTDEKVLWVTETT-A------N--RLHRIA  205 (319)
T ss_dssp             TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES----SEEEEEECTTSSEEEEEEGG-G------T--EEEEEE
T ss_pred             eccceeecccccccccCcceeEEEecccceeEEEeeccc----eeeeeeeccccceEEEeccc-C------C--ceEEEE
Confidence            36888886532      2468888988877766533221    11 232 2344 57765421 1      1  555554


Q ss_pred             c--CCC-CeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEEcCCCC
Q 045071          342 A--CGT-LWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCP  406 (453)
Q Consensus       342 ~--~~~-~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~~p  406 (453)
                      .  ... ........+... ......   .++ ++..++.||+.....++|.+||++-+....++ +|
T Consensus       206 ~~~~g~~~~~~~~~~~~~~-~~~~~P---dGl-~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~-~P  267 (319)
T d2dg1a1         206 LEDDGVTIQPFGATIPYYF-TGHEGP---DSC-CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQIL-IP  267 (319)
T ss_dssp             ECTTSSSEEEEEEEEEEEC-CSSSEE---EEE-EEBTTCCEEEEEETTTEEEEECTTSCEEEEEE-CT
T ss_pred             EcCCCceeccccceeeecc-CCccce---eee-eEcCCCCEEEEEcCCCEEEEECCCCcEEEEEe-CC
Confidence            3  221 122111111100 000000   122 23335569998777899999999877666663 44

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.11  E-value=7.6  Score=32.65  Aligned_cols=105  Identities=11%  Similarity=0.152  Sum_probs=56.8

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCc-e-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEE
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPS-L-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAE  349 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~-l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~  349 (453)
                      +|.+|+.......+..||.....-..+....  ....+. + +.-+|.||++....  .       .|+.++.......+
T Consensus       124 ~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~--~~~~~~~i~~d~~g~i~v~d~~~--~-------~V~~~d~~G~~~~~  192 (279)
T d1q7fa_         124 KGRIIVVECKVMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNRA--H-------CVKVFNYEGQYLRQ  192 (279)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGGG--T-------EEEEEETTCCEEEE
T ss_pred             CCcEEEEeeccceeeEeccCCceeecccccc--cccccceeeeccceeEEeeeccc--c-------ceeeeecCCceeee
Confidence            5788888776678999998876555443221  122222 2 23468888765321  1       66777764432333


Q ss_pred             EeecCHHHHHHhhcccCCCcEE-EEeeCCEEEEEEcC-CCeEEEEECCCC
Q 045071          350 IERMPQQLYAQFAEIEAGNGFD-TIGHGEFIVIVIRG-SDKALLFDLCMK  397 (453)
Q Consensus       350 v~~mp~~~~~~~~~~~~~~~~~-~~~~g~~I~l~~~~-~~~v~~Yd~~~~  397 (453)
                      +.. +..    +     ..+.. ++...+.||+.... ..++.+||.+-+
T Consensus       193 ~g~-~g~----~-----~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~  232 (279)
T d1q7fa_         193 IGG-EGI----T-----NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ  232 (279)
T ss_dssp             ESC-TTT----S-----CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred             ecc-ccc----c-----cCCcccccccCCeEEEEECCCCcEEEEECCCCC
Confidence            321 110    0     11121 23334458887643 457899997644

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.60  E-value=1.9  Score=41.24  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             CCeEEECCEEEEEecCCCEEEEEECCCC--cEEEeec-CCcc------ccCCCceeeeCCeEEEEEEEeccCCCCCCcEE
Q 045071          266 GRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNIQA-PMRR------FLRSPSLLDSNGKLILVAAVEKSKLNVPKSLR  336 (453)
Q Consensus       266 ~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i~~-p~~~------~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~  336 (453)
                      ..+++++|+||+.+.. ..|+++|.+++  .|+.-.. +...      ......++..++++|+...  +.        .
T Consensus        60 stPiv~~g~vyv~t~~-~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g--------~  128 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--DG--------R  128 (560)
T ss_dssp             CCCEEETTEEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--TS--------E
T ss_pred             eCCEEECCEEEEECCC-CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC--CC--------E
Confidence            4569999999998776 68999999986  4864211 1100      0112234556788776431  11        6


Q ss_pred             EEEeecCCC--CeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEE
Q 045071          337 LWSLQACGT--LWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQW  401 (453)
Q Consensus       337 vw~ld~~~~--~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~  401 (453)
                      |+.+|..++  .|+.-..-+...    ..    ....-+..++.|++-...     .+.+..||.++.+..|
T Consensus       129 l~Alda~tG~~~w~~~~~~~~~~----~~----~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         129 LIALDAKTGKAIWSQQTTDPAKP----YS----ITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             EEEEETTTCCEEEEEECSCTTSS----CB----CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             EEEEECCCCcEEeccCccCcccc----ee----eeeeeeeecCcccccccceeccccceEEEEECCCceEEe
Confidence            777776433  465322111100    00    000112246777663321     3579999999986433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.45  E-value=3.2  Score=39.67  Aligned_cols=117  Identities=15%  Similarity=0.260  Sum_probs=66.4

Q ss_pred             CCeEEECCEEEEEecCCCEEEEEECC-CC--cEEEee-cCCcc-c-c----CCCceeeeCCeEEEEEEEeccCCCCCCcE
Q 045071          266 GRMVQVNGKFYCMNYSPFSVLAYDIS-AN--AWFNIQ-APMRR-F-L----RSPSLLDSNGKLILVAAVEKSKLNVPKSL  335 (453)
Q Consensus       266 ~~~v~~~G~lY~~~~~~~~i~~yD~~-~~--~W~~i~-~p~~~-~-~----~~~~lv~~~g~L~vv~~~~~~~~~~~~~i  335 (453)
                      ..+++++|++|+.+.....++++|.. ++  .|+.-. .+... . .    ....++..+++||+...  +.        
T Consensus        56 ~tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~--~g--------  125 (571)
T d2ad6a1          56 GAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--NG--------  125 (571)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--TS--------
T ss_pred             cCCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC--CC--------
Confidence            34688999999987644679999974 44  586421 11110 0 0    11235567888886331  11        


Q ss_pred             EEEEeecCCC--CeEEEeecCH-HHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEE
Q 045071          336 RLWSLQACGT--LWAEIERMPQ-QLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQW  401 (453)
Q Consensus       336 ~vw~ld~~~~--~W~~v~~mp~-~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~  401 (453)
                      +++.+|..++  .|..  .+.. ..  .. ..   .. .-+..+|.|++....     .+.+.+||..+.+-.|
T Consensus       126 ~l~alda~tG~~~w~~--~~~~~~~--~~-~~---t~-~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  190 (571)
T d2ad6a1         126 HLLALDAKTGKINWEV--EVCDPKV--GS-TL---TQ-APFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             EEEEEETTTCCEEEEE--ECCCGGG--TC-BC---CS-CCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             cEEeeehhhhhhhccc--ccccccc--cc-ce---ee-cCeEeCCeEEEeeccccccccCcEEEEECCCCcEEE
Confidence            7888887654  4653  2211 11  00 00   00 112347888876432     4689999999986444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.76  E-value=6.1  Score=33.83  Aligned_cols=68  Identities=9%  Similarity=0.089  Sum_probs=44.9

Q ss_pred             CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEe
Q 045071          272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIE  351 (453)
Q Consensus       272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~  351 (453)
                      +|.|||+......|..||+++++-+....|...  .+ ....-+|+|++..  .+         .|..+|..+++++.+.
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~--~~-i~~~~dg~l~va~--~~---------gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKTVHALPFMG--SA-LAKISDSKQLIAS--DD---------GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEEEEECSSCE--EE-EEEEETTEEEEEE--TT---------EEEEEETTTCCEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEEEEECCCCc--EE-EEEecCCCEEEEE--eC---------ccEEeecccceeeEEe
Confidence            689999987667999999999987766555321  11 1223567777632  11         5667777677776665


Q ss_pred             ec
Q 045071          352 RM  353 (453)
Q Consensus       352 ~m  353 (453)
                      ..
T Consensus        95 ~~   96 (295)
T d2ghsa1          95 EL   96 (295)
T ss_dssp             CS
T ss_pred             ee
Confidence            44

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=81.99  E-value=4.1  Score=38.91  Aligned_cols=118  Identities=19%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CCeEEECCEEEEEecCCCEEEEEECCCC--cEEEe-ecCCccc------cCCCceeeeCCeEEEEEEEeccCCCCCCcEE
Q 045071          266 GRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNI-QAPMRRF------LRSPSLLDSNGKLILVAAVEKSKLNVPKSLR  336 (453)
Q Consensus       266 ~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i-~~p~~~~------~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~  336 (453)
                      ..+++++|++|+.+.. ..|+++|.+++  .|+.- ..+....      .....++..++++++...  +        -+
T Consensus        71 stPiv~~g~vyv~t~~-~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~--~--------g~  139 (573)
T d1kb0a2          71 ATPVVVDGIMYVSASW-SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--D--------GR  139 (573)
T ss_dssp             CCCEEETTEEEEECGG-GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--T--------SE
T ss_pred             ECCEEECCEEEEECCC-CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec--c--------cc
Confidence            3468899999988765 67999999986  47542 1111110      112235567888876331  1        16


Q ss_pred             EEEeecCCC--CeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCc--eEE
Q 045071          337 LWSLQACGT--LWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKS--WQW  401 (453)
Q Consensus       337 vw~ld~~~~--~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~--W~~  401 (453)
                      ++.||..++  .|+....-...   ....    ..-..+..+|.|++-...     .+.|..||..+.+  |+.
T Consensus       140 l~alda~tG~~~W~~~~~~~~~---~~~~----~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         140 LIALDAATGKEVWHQNTFEGQK---GSLT----ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EEEEETTTCCEEEEEETTTTCC---SSCB----CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             eeeeccccccceecccCccCCc---ceEE----eecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            777776533  46542110000   0000    000112347777774321     4579999999986  554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=81.61  E-value=8.9  Score=32.62  Aligned_cols=108  Identities=15%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             ECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCce-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEE
Q 045071          271 VNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAE  349 (453)
Q Consensus       271 ~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~  349 (453)
                      -+|.||+.......|..+|+..........+  ..  -..+ +.-+|+||+++...+       .+.++.++.....-..
T Consensus        37 pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~--~~--~~gla~~~dG~l~v~~~~~~-------~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          37 PDGTIFVTNHEVGEIVSITPDGNQQIHATVE--GK--VSGLAFTSNGDLVATGWNAD-------SIPVVSLVKSDGTVET  105 (302)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCCEEEEEECS--SE--EEEEEECTTSCEEEEEECTT-------SCEEEEEECTTSCEEE
T ss_pred             CCCCEEEEeCCCCEEEEEeCCCCEEEEEcCC--CC--cceEEEcCCCCeEEEecCCc-------eEEEEEecccccceee
Confidence            4689998877778999999887644322222  11  1123 235789988764322       3455666655555555


Q ss_pred             EeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc
Q 045071          350 IERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS  398 (453)
Q Consensus       350 v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~  398 (453)
                      +..++..-         ...-..+..++.+|+.......+..+|..+..
T Consensus       106 ~~~~~~~~---------~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1         106 LLTLPDAI---------FLNGITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEECTTCS---------CEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccCCcc---------ccceeEEccCCCEEeeccccccceeeeccCCc
Confidence            66655410         00111234567888877667889999988775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.02  E-value=16  Score=31.58  Aligned_cols=140  Identities=9%  Similarity=0.114  Sum_probs=70.7

Q ss_pred             ceeEEEcccCCCCCcccccCCCCCcc-cCCCCCeEEE-CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceee
Q 045071          236 SSESFHIDAGGFFSLWGTTSSLPRLC-SLESGRMVQV-NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLD  313 (453)
Q Consensus       236 ~~evyds~~~~~~~~W~~~~~~p~~~-~~~~~~~v~~-~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~  313 (453)
                      .+.+|+..+    +.+..+..+.... ..  ....+. +|.+...+.....|..+|+.+.+|.....-. .......-+.
T Consensus        30 ~i~iw~~~~----~~~~~~~~l~gH~~~V--~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~v~~i~  102 (371)
T d1k8kc_          30 EVHIYEKSG----NKWVQVHELKEHNGQV--TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-RINRAARCVR  102 (371)
T ss_dssp             EEEEEEEET----TEEEEEEEEECCSSCE--EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-CCSSCEEEEE
T ss_pred             EEEEEECCC----CCEEEEEEecCCCCCE--EEEEECCCCCEEEEEECCCeEEEEeecccccccccccc-cccccccccc
Confidence            457888877    6666544332100 00  111222 4443333333357899999999887653211 1112222222


Q ss_pred             --eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEe---eCCEEEEEEcCCCe
Q 045071          314 --SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIG---HGEFIVIVIRGSDK  388 (453)
Q Consensus       314 --~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~---~g~~I~l~~~~~~~  388 (453)
                        -+|+.++++.. +      ..+.+|.++.....+........          -...+.++.   .+..| +.....+.
T Consensus       103 ~~p~~~~l~~~s~-d------~~i~i~~~~~~~~~~~~~~~~~~----------~~~~v~~v~~~p~~~~l-~s~s~D~~  164 (371)
T d1k8kc_         103 WAPNEKKFAVGSG-S------RVISICYFEQENDWWVCKHIKKP----------IRSTVLSLDWHPNSVLL-AAGSCDFK  164 (371)
T ss_dssp             ECTTSSEEEEEET-T------SSEEEEEEETTTTEEEEEEECTT----------CCSCEEEEEECTTSSEE-EEEETTSC
T ss_pred             cccccccceeecc-c------Ccceeeeeecccccccccccccc----------cccccccccccccccce-eccccCcE
Confidence              25666666542 1      36799999876554543322211          011233332   23444 44444678


Q ss_pred             EEEEECCCCceE
Q 045071          389 ALLFDLCMKSWQ  400 (453)
Q Consensus       389 v~~Yd~~~~~W~  400 (453)
                      +.+||...+...
T Consensus       165 v~v~~~~~~~~~  176 (371)
T d1k8kc_         165 CRIFSAYIKEVE  176 (371)
T ss_dssp             EEEEECCCTTTS
T ss_pred             EEEEeeccCccc
Confidence            899998876543